Citrus Sinensis ID: 001386
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WV90 | 1120 | Topless-related protein 1 | yes | no | 0.963 | 0.935 | 0.542 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.984 | 0.946 | 0.537 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.971 | 0.931 | 0.497 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.959 | 0.923 | 0.464 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.965 | 0.947 | 0.465 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.263 | 0.211 | 0.274 | 7e-19 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.429 | 0.306 | 0.211 | 3e-14 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.466 | 0.403 | 0.220 | 2e-13 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.233 | 0.342 | 0.248 | 2e-11 | |
| Q12788 | 808 | Transducin beta-like prot | yes | no | 0.437 | 0.589 | 0.205 | 2e-10 |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function desciption |
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Score = 1177 bits (3046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/1119 (54%), Positives = 775/1119 (69%), Gaps = 71/1119 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T SP + W S S + AVS ++L P+ +A +D P D
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299
Query: 268 SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321
SD +S+++ P+ I +E + V T+PG ++ + F++ D
Sbjct: 300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343
Query: 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG 381
PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+
Sbjct: 344 LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403 KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463 GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522
Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
IFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523 IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582
Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
ESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT IDA GG
Sbjct: 583 ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640
Query: 622 LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTG 680
L +PRI FNK G+LLAV AN+N IK++ + + LS K ++N I V
Sbjct: 641 LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700
Query: 681 AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKI 737
+N D + DVKP I+ E+ +KS+V K PS+C+SL LP ++ KI
Sbjct: 701 PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760
Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLT----LSTEVPPRLYQPRHGPQFMVNDTT 793
SRL + N G AI ALASN +HL+W+W RND + +PP+ +QP G M ND
Sbjct: 761 SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVA 819
Query: 794 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 853
++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct: 820 ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879
Query: 854 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913
+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct: 880 IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939
Query: 914 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI- 972
W Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C+KQW P+
Sbjct: 940 WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVR 998
Query: 973 -SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031
S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S +V+P
Sbjct: 999 ESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLV 1058
Query: 1032 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1059 IAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/1143 (53%), Positives = 784/1143 (68%), Gaps = 72/1143 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T SP + W S S + AVS A++L P+ A ++D P D
Sbjct: 240 QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299
Query: 268 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
S+ +S+++ P+ I +E V +S +S ++ F++ D PKTV
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348
Query: 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
A+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+ CSM
Sbjct: 349 ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
+ ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408 LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468 ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527
Query: 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
+DGKIKAWLYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528 LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587
Query: 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +P
Sbjct: 588 VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645
Query: 627 RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 680
RI FNK G+LLAV NEN IKI+ + + +S K ++N I + T
Sbjct: 646 RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705
Query: 681 AGIANGSVSV------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 731
AG A+ S +V N D + DVKP I+ E+ +KS++ K + PS+C+SL LP
Sbjct: 706 AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765
Query: 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT----LSTEVPPRLYQPRHGPQF 787
++ KISRL + N G AI ALASN +HL+W+W RN+ + +PP+ +QP G
Sbjct: 766 LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824
Query: 788 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 847
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825 MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884
Query: 848 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 907
+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 885 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944
Query: 908 VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 967
VW+ DGW Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+K
Sbjct: 945 VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004
Query: 968 QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1026
QW S+ PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064
Query: 1027 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDR 1084
V+P IAAHP +P FAVGL++G V++ EP E W V PP E PT+ S G
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124
Query: 1085 AMD 1087
A D
Sbjct: 1125 ASD 1127
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1159 (49%), Positives = 746/1159 (64%), Gaps = 102/1159 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ++ H LE+ES F+F+M++FED + G+W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD D AKA++IL K+LK F+ NEELFKE+ LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L + R++E LSKY GD SAR M+ ELK++IEANP+ + KL+FPS+K RLR LINQSL
Sbjct: 121 LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSA----VSFVALSLSDPTNKAVTM---DRPE----------- 266
Q T +P + + + M S VS + L P N AV+M +RP
Sbjct: 240 QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDY 298
Query: 267 ---DSD-ILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
DS+ +L P I L VTYPG QS
Sbjct: 299 QTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAH 338
Query: 317 TSFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
++S D PK V++ L +GS+ SMDFHPVQ T+LLVGTN+GD +W+V S +KL R+
Sbjct: 339 ATYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRS 397
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
FKVWD+ C++ + +L + +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R
Sbjct: 398 FKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNH 457
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
LEIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517
Query: 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG CT MAY A+G RLFSCGTSKEGE
Sbjct: 518 QKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGE 577
Query: 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
SF+VEWNESEGA+KRTY GL + SV VV FDT K++ L AGD+ +K WDM+ V LL+
Sbjct: 578 SFIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLS 635
Query: 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKL 670
+ A GGLP +P + NK GTLLAV +N IKIL E +S+ G+ S
Sbjct: 636 STAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPG 695
Query: 671 SV--NPI-------STVTGAGIANGSVS--------VNEDPKE--DVKPEISVEAENKSE 711
SV PI ++ TG ++ G S +N D + DVKP I+ +AE
Sbjct: 696 SVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKT 755
Query: 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL- 770
+ + S+ ++L LP + ++ +L Y N G AI ALA N H +W+W +++ L
Sbjct: 756 WKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLL 815
Query: 771 ---STEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 827
++ VPP+L+QP G M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +M
Sbjct: 816 GKANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMM 874
Query: 828 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 887
TFKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH KRVTG
Sbjct: 875 TFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTG 934
Query: 888 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947
L FS+ LN+LVSSG D+Q+ VW +DGW Q + +Q P G + T +QFH+DQ
Sbjct: 935 LAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994
Query: 948 LLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006
L+VH + LAIYEA +L +KQW P SS ++ A +SCD + ++ +F DG++SI A+ L
Sbjct: 995 LVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTL 1054
Query: 1007 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV- 1065
+++CRI +YL P+ VYP +AAHP +P QFAVGLT+G V+VIEP P W +
Sbjct: 1055 QLKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGIS 1113
Query: 1066 LPPDEIVGDQPTSTSEGDR 1084
PP+ G +S D+
Sbjct: 1114 APPENGAGPSVSSAPGSDQ 1132
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/1120 (46%), Positives = 721/1120 (64%), Gaps = 76/1120 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+ L G+W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M ELK++IEANP+ + KL FPS K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
NWQH C NP+PNPDI TLF+DH C ++ LP PS++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236
Query: 234 -NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV 292
F S+ + +A +++P + S +++ SP + Q + + +P
Sbjct: 237 GPFQSNPAPAPNANALAGWMANPNPSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRA 290
Query: 293 SLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSSS 336
++ +S+ +++ + S S D P+ V T+ +GS
Sbjct: 291 PSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV 350
Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
+SMDFHP HTLL VG + G+ LW+V S +K+ FK+W++ ACS++F+ ++V++P
Sbjct: 351 -ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPS 409
Query: 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 456
+SV RV WSPDG+LLGV+++KH++ +YAY GSD RQ LEIDAHVG VNDLAF+ P KQ+
Sbjct: 410 ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQ-GSDLRQHLEIDAHVGCVNDLAFAHPNKQM 468
Query: 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 516
V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLY
Sbjct: 469 CVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLY 527
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
D++G+RVDYDAPG CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G
Sbjct: 528 DNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--F 585
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
+ S VV FDT +++ LA G+D+ IK W+M+ LLT ++A GGLP PR+ FNK+G L
Sbjct: 586 RKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNL 645
Query: 637 LAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687
LAV +AN + ++ L E+ S +A+ D K+S + +++ I
Sbjct: 646 LAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAIGKIE 703
Query: 688 VSVNEDPKEDVKPEISVEAENKS----------EVEKPL----FARPSECQSLLLP-SKV 732
P +EA +++ + KPL P++C+ + +P SK
Sbjct: 704 HMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKD 763
Query: 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT----LSTEVPPRLYQPRHGPQFM 788
+K++RL Y N G + AL SNGV +W+W RN+ + V P+ +QP G M
Sbjct: 764 SVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LLM 822
Query: 789 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 848
ND + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LAF+
Sbjct: 823 ANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFH 881
Query: 849 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 908
P DNN+IAIGM+DS+I IYN R EV +KL+GH K +TGL FS ALNILVSSG DAQ+F
Sbjct: 882 PQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFF 941
Query: 909 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 968
W D W + ++Q P G + +T +QFH DQ + L+ HET LAIY+A ++ C+ +
Sbjct: 942 WTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHK 999
Query: 969 WFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSCL 1025
W P ++ PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI +AY+ +PT +
Sbjct: 1000 WVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA 1059
Query: 1026 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1065
++P I AHP +P Q AVGL++G V VIEP+E W V
Sbjct: 1060 PIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/1129 (46%), Positives = 709/1129 (62%), Gaps = 79/1129 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F ES H LE+ES F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD + AKA+ IL +DL+ F+ NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L + R++E LSKY GD +AR M+ ELK++IEANP+ + KL FP+++ RLR LINQSL
Sbjct: 121 LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
NWQH C NP+PNPDI TLF DH C L + + P T P+++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236
Query: 234 ------------NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILN 281
+S M S S V ++ P M +P++ + IL
Sbjct: 237 PFPPGPAAANAGALASWMAAASGASAVQAAVVTP----ALMPQPQNQ--------MSILK 284
Query: 282 EQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIE 332
+ PG+ PD+ P S+++ + + + S D P A L +
Sbjct: 285 RPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQ 344
Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
GS+ SM+F+P+Q+TLLLVG+ G+ LW++ + ++L R FK+WD+ CS F+ +
Sbjct: 345 GSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403
Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
++ +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ EIDAHVG VNDLAF+ P
Sbjct: 404 KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463
Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512
+Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct: 464 NRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522
Query: 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
AWLYD+LG+RVDYDAPG CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+
Sbjct: 523 AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632
+ Q VV FDT+K+ LA G+D IK WDMN + +LT+ DA GGLP P + FNK
Sbjct: 583 --EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640
Query: 633 NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691
+G LLAV +N KIL P S+ A + + V+ V GA +A+ + V
Sbjct: 641 DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVE 699
Query: 692 E-------------DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKI 737
DP K I + + PS+C LP + K+
Sbjct: 700 RGSPVRHSQMLNGVDPS---KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE----VPPRLYQPRHGPQFMVNDTT 793
+L Y N G I AL SNG+ +W+W N+ S + V P+ +QP G M ND +
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVS 815
Query: 794 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 853
N + A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DNN
Sbjct: 816 GVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 854 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913
VIAIGM+DSTI IYN R EV SKL+GH KR+TGL FS ALNILVSSG DAQI W +D
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 914 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 973
W + ++Q P G A +T +QFH DQ R L+VHET LA+++A ++ C++QW P
Sbjct: 936 WEKRKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 974 SV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031
S+ PIS A ++C+ ++++T+F DG + + +A +L ++CRI +AYL L P
Sbjct: 994 SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLV 1051
Query: 1032 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1080
+AAHP P QFAVGL +G V ++EP E W ++PP E + + P++TS
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)
Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 382
T QTL SS +S+ F P V + GD + K+WD G
Sbjct: 958 TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000
Query: 383 CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 442
C T + G SV V +SPDG + ++++ G+ Q LE H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052
Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 500
V + FS ++++ + DD TIK+WDAV+G+ T + EGHG V+S+ P +
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
+ S S+DG IK W S + G +A+S +G+R+ S + + W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIW 1162
Query: 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
+ + G +T +G V V F ++ + D IKIWD T++ G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219
Query: 621 GLPENPRICFNKNGTLLAVIANENRIKILET 651
G ++ + F+ +G +A +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/535 (21%), Positives = 218/535 (40%), Gaps = 68/535 (12%)
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
VN V +S DG +L V+L+ G + H V + FS + +
Sbjct: 909 VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFSP--NSLML 963
Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
+ D+T+++WD +G Y F+GH VYS+ + ++ + + S D ++ W D
Sbjct: 964 ASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW--DI 1019
Query: 519 LGARVDYDAPG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
++ Y G C R + +S++G L S + + W+ S G T QG
Sbjct: 1020 SSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQG--- 1072
Query: 577 QHNS-VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNG 634
H S V V F + + GDD ++++WD++ L T+ G R + F+ NG
Sbjct: 1073 -HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQ---GYTSWVRFLVFSPNG 1128
Query: 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 694
LA +++ +++ + + ++ + ++ +P +G + +V + +
Sbjct: 1129 VTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDIS 1188
Query: 695 KEDV----------------KPEISVEAENKSEVEKPLFA-RPSECQSLLLPSKVKANKI 737
P+ S A S+ L+ S+C L + + +
Sbjct: 1189 SSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKC---LCTFQGHTSWV 1245
Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNS 797
+ + +N G + + +S+ +W D++ S + G VN
Sbjct: 1246 NSVVFNPDGSMLASGSSDKTVRLW-----DISSS-----KCLHTFQGHTNWVNSV----- 1290
Query: 798 QEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 856
A + + + L S SG + L+ + + K + T + +S+ F+P D ++A
Sbjct: 1291 -------AFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSP-DGTMLA 1342
Query: 857 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 911
G DD T+ +++ S E + GH+ V ++FS IL S GD + +W +
Sbjct: 1343 SGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSI 1397
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 120/543 (22%), Positives = 224/543 (41%), Gaps = 35/543 (6%)
Query: 374 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
+ +VW++ + +L + R V VV+SPDG +L + V+L++ G +
Sbjct: 665 HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ H V +AF + ++ + DKTIK+WD G+ + GH V C
Sbjct: 721 --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 552
+ + + S + D IK W S G + G R +A+SA+G+ L S
Sbjct: 775 AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829
Query: 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
G+ + WN G +TY G NSV + + +++ D IK+WD
Sbjct: 830 GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886
Query: 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672
+ T+ G E + F+ +G LA ++ + +++ + A +D ++
Sbjct: 887 IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944
Query: 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732
+P + +G + +V + + IS + + F+ S Q+L S
Sbjct: 945 SPDRQILASGSNDKTVKLWD---WQTGKYISSLEGHTDFIYGIAFSPDS--QTLASASTD 999
Query: 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL--TLSTEVPPRLYQPRHGPQFMVN 790
+ ++ ++ Q I ++ V+ + P+ + T S + +L+ G
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCL--- 1055
Query: 791 DTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAFNP 849
T S + + A S + L SAS + L+ T + + + S S F+P
Sbjct: 1056 -KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSP 1114
Query: 850 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 909
+ +IA D T+ I++ + + + L GH+ V + FS IL S+ D + +W
Sbjct: 1115 -NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIW 1173
Query: 910 DVD 912
DV+
Sbjct: 1174 DVN 1176
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 20/274 (7%)
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
VWD+ + L D V V +SPDG+LL V+L+ + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
+ H V D+AFS ++ + D T ++W+ TG+ +GH VY++
Sbjct: 537 AVFEGHTHYVLDIAFSPDGSMVA--SGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA-- 592
Query: 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
+ + S S DG I+ W + R AP +A+S +G L +
Sbjct: 593 FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----SD 647
Query: 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
S + W+ + G T++G + V V F + + DD I++WD+ + T
Sbjct: 648 STVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHT 704
Query: 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
T++ G P + + F+ GT LA + + I+I
Sbjct: 705 TLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 113/549 (20%), Positives = 200/549 (36%), Gaps = 73/549 (13%)
Query: 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 464
SPD +L A ++ +A+ GS R I H V +AF P + + T G D
Sbjct: 75 SPDNEVLVTASRALLLAQWAWQEGSVTRLWKAI--HTAPVATMAFD-PTSTL-LATGGCD 130
Query: 465 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 524
++VWD V T+ F G V+ + H +FS + D I+ W
Sbjct: 131 GAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVWSLQDRSCLAV 190
Query: 525 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY-------QGLQLQ 577
A T +A+SA+G + S G K + W+ RT + L
Sbjct: 191 LTAHYSAVTSLAFSADGHTMLSSGRDK----ICIIWDLQSCQATRTVPVFESVEAAVLLP 246
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--FNKNGT 635
VS + + L AGD +++W+ Q + T G + C + G
Sbjct: 247 EEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGPGQELTHCTLAHTAGV 306
Query: 636 LLAVIANENRI------------------KILETPESNSVDAAGVLSDNLRKLSVNPIST 677
+L A+ N + ++L+ D+ V++ N L V + T
Sbjct: 307 VLTATADHNLLLYEARSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLKVFELQT 366
Query: 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737
+ I +G + ++++ K LFA ++ QS+ + KA ++
Sbjct: 367 -SACQILHGHTDIV----------LALDVFRKGW----LFASCAKDQSVRIWRMNKAGQV 411
Query: 738 SRLTYNNG-------------GQAIFALASNGVHL-MWRWPRNDLTLSTEVPPRLYQPRH 783
+ +G ++ S + +W P+ L+ +T P +
Sbjct: 412 MCVAQGSGHTHSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLSKNTA-------PDN 464
Query: 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTAT 843
GP + TT + + A++ ND L + S + + +L +
Sbjct: 465 GPILLQAQTTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGL 524
Query: 844 -SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 902
+ F+P D V+A D TI ++ + + EGH V + F L+SSG
Sbjct: 525 WCVQFSPMD-QVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGS 583
Query: 903 DAQIFVWDV 911
D + +W +
Sbjct: 584 DGLVKLWTI 592
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | ||||||
| 224141931 | 1109 | predicted protein [Populus trichocarpa] | 0.975 | 0.956 | 0.583 | 0.0 | |
| 356550630 | 1132 | PREDICTED: topless-related protein 1-lik | 0.958 | 0.921 | 0.554 | 0.0 | |
| 357455301 | 1134 | WD repeat-containing protein, putative [ | 0.959 | 0.920 | 0.548 | 0.0 | |
| 357455305 | 1149 | WD repeat-containing protein, putative [ | 0.959 | 0.908 | 0.548 | 0.0 | |
| 357455303 | 1112 | WD repeat-containing protein, putative [ | 0.959 | 0.938 | 0.554 | 0.0 | |
| 356526242 | 1133 | PREDICTED: protein TOPLESS-like [Glycine | 0.957 | 0.919 | 0.549 | 0.0 | |
| 356554802 | 1136 | PREDICTED: topless-related protein 1-lik | 0.969 | 0.928 | 0.550 | 0.0 | |
| 357458875 | 1138 | WD repeat-containing protein, putative [ | 0.960 | 0.918 | 0.551 | 0.0 | |
| 24461849 | 1127 | CTV.2 [Citrus trifoliata] | 0.954 | 0.921 | 0.550 | 0.0 | |
| 297839887 | 1120 | hypothetical protein ARALYDRAFT_895943 [ | 0.956 | 0.929 | 0.545 | 0.0 |
| >gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1209 bits (3129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 644/1103 (58%), Positives = 783/1103 (70%), Gaps = 42/1103 (3%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
M+ L KDLV LI QFL+EEGF E+A MLERES +YF MKFFEDMI G W++ E+YLS F
Sbjct: 1 MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TK+DDNRYSTKIYFEIRKQ F E LD + +KAL+IL KDLK FAP NEEL KE+ LLT
Sbjct: 61 TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++IRDHE LS Y DA SARK MM+ELK++IEANP+L+ KL+FP+I RLRRLINQSL
Sbjct: 121 LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 233
NWQH+HCA PQPNPDI TLFVDH+C +D FS +S+SN LP QTT + S+
Sbjct: 180 NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238
Query: 234 NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILS-------EKSPVRILNEQAST 286
N +SS S++S ALSL PTN + E +LS + + +L E +T
Sbjct: 239 NSTSSSEAHSSISSEALSLGVPTNIGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTT 297
Query: 287 VTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSMD 341
V G+ I + S+ +F F S D PK V + L EGSS P SMD
Sbjct: 298 VNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSMD 356
Query: 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401
FHP + T+LLVGT VGD GLW+V+SG+ L RNFKVWDI ACSM+FK L++DP VSVNR
Sbjct: 357 FHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNR 416
Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
V WSP+G L GVAYSKH+VQ+Y+Y+ DARQQLEIDAHVG VNDL FSAP KQ+ VITC
Sbjct: 417 VAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITC 476
Query: 462 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521
GDDK +K WDA G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LGA
Sbjct: 477 GDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGA 536
Query: 522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581
RVDYDAPGLGCT MAYS + RRLFSCGTS GESFLVEW++SEGAIKRTY G LQ NS
Sbjct: 537 RVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNSS 593
Query: 582 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641
SVV FD K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV A
Sbjct: 594 SVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVSA 653
Query: 642 NENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------VNED 693
N+N+IKIL S + L D+ R +S IS A A+ +V+ +
Sbjct: 654 NDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQNG 712
Query: 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753
+ VK +I+ + PS+CQ L LPS +KANKISRL YNN G +I AL
Sbjct: 713 NLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALT 772
Query: 754 SNGVHLMWRWPRNDLTLS----TEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 809
SN HL W+WP+ND LS +V P+L+QPR M ND T SN +E VPCFALS+N
Sbjct: 773 SNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSRN 832
Query: 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 869
D+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN
Sbjct: 833 DSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNV 892
Query: 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 929
RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW Q LQ PDG +
Sbjct: 893 RSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRI 952
Query: 930 TLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCR 987
+ S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P + PIS ATFSCD +
Sbjct: 953 PFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQ 1012
Query: 988 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1047
MV+ SF+DG +SI +AS+ ++ C+I TAYL PT+S L VYP AIAAHP +P QFAVGLT
Sbjct: 1013 MVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGLT 1071
Query: 1048 NGEVYVIEPNEPGDTWAVLPPDE 1070
+G V V EP W++L DE
Sbjct: 1072 DGGVIVFEPPISAGKWSMLTADE 1094
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1207 bits (3123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/1138 (55%), Positives = 784/1138 (68%), Gaps = 95/1138 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
Q T +P + W + + + AVS A+ L P+ A ++D P D
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299
Query: 268 SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 318
SD +S+++ P+ + +E + T+PG N PD
Sbjct: 300 SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340
Query: 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 378
D PKT ++L +GSS PMSMDFHPVQ TLLLVGTNVGD LW+V S ++L +RNFKVW
Sbjct: 341 --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397
Query: 379 DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 438
D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D Q LEID
Sbjct: 398 DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457
Query: 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498
AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458 AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517
Query: 499 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558
I FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577
Query: 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618
EWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA
Sbjct: 578 EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635
Query: 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 670
GGLP +PRI FNK+G LLAV ANEN IKIL + NS+ S+ + K
Sbjct: 636 DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695
Query: 671 SVNPISTVTG----------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLF 717
++NPIS A ++N D + DVKP IS E+ +KS++ K
Sbjct: 696 TINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEI 755
Query: 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT----LSTE 773
PS+C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+W RND +
Sbjct: 756 NEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATAS 815
Query: 774 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL 833
V P+L+QP G M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816 VQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 874
Query: 834 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 893
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 875 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHV 934
Query: 894 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 953
LN+LVSSG DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET
Sbjct: 935 LNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHET 994
Query: 954 HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012
LAIYEA +L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL ++CRI
Sbjct: 995 QLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRI 1054
Query: 1013 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
+AYL + S +V P IAAHP +P QFAVGL++G V+V EP+E W V PP E
Sbjct: 1055 NPSAYLSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIE 1111
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/1139 (54%), Positives = 778/1139 (68%), Gaps = 95/1139 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 297
Query: 264 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 298 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 339
Query: 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
S D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 340 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 398
Query: 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 399 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 458
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 459 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 518
Query: 497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 519 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 578
Query: 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 579 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 636
Query: 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 637 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 695
Query: 668 RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
K +NP+ + + A +N D + D+KP IS E+ +KS++ K
Sbjct: 696 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 755
Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE--- 773
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +
Sbjct: 756 INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 815
Query: 774 -VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 832
VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816 SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 874
Query: 833 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 892
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 875 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 934
Query: 893 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952
LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHE
Sbjct: 935 VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 994
Query: 953 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011
T LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL ++CR
Sbjct: 995 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1054
Query: 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
I +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1055 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1113
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1190 bits (3079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/1139 (54%), Positives = 777/1139 (68%), Gaps = 95/1139 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 76 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 136 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 195 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 255 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 312
Query: 264 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 313 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 354
Query: 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
S D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 355 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 413
Query: 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 414 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 473
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 474 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 533
Query: 497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 534 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 593
Query: 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 594 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 651
Query: 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 652 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 710
Query: 668 RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
K +NP+ + + A +N D + D+KP IS E+ +KS++ K
Sbjct: 711 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 770
Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS----T 772
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S
Sbjct: 771 INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 830
Query: 773 EVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 832
VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 831 SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 889
Query: 833 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 892
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 890 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 949
Query: 893 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952
LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHE
Sbjct: 950 VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 1009
Query: 953 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011
T LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL ++CR
Sbjct: 1010 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1069
Query: 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
I +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1070 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1190 bits (3078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/1117 (55%), Positives = 770/1117 (68%), Gaps = 73/1117 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 225 QTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE- 282
Q T +P + M + V+ S+S + + P D +S+++ P+ + +E
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHP--SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEG 297
Query: 283 ----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 338
+ T+PG Q+F S D PKTV +TL +G SSPM
Sbjct: 298 NLPVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPM 338
Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
SMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VS
Sbjct: 339 SMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVS 398
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
VNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ V
Sbjct: 399 VNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCV 458
Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
ITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 459 ITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDN 518
Query: 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +
Sbjct: 519 LGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR- 577
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLA
Sbjct: 578 -SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLA 636
Query: 639 VIANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGA 681
V ANEN IKI L + E++S DA+ S+ + K +NP+ + + A
Sbjct: 637 VSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERA 695
Query: 682 GIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKIS 738
+N D + D+KP IS E+ +KS++ K PS C+SL LP + KIS
Sbjct: 696 SSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKIS 755
Query: 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS----TEVPPRLYQPRHGPQFMVNDTTD 794
RL Y N G AI ALASN +HL+W+W RND S VPP+L+QP G M ND D
Sbjct: 756 RLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDIND 814
Query: 795 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 854
+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+
Sbjct: 815 NNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 874
Query: 855 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914
IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG D QIFVW+ DGW
Sbjct: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGW 934
Query: 915 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-S 973
Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP +
Sbjct: 935 EKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDA 994
Query: 974 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1033
+ PIS ATFSCD ++F SF+D T+ + ASNL ++CRI +AYL S ++ P IA
Sbjct: 995 AAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIA 1054
Query: 1034 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
AHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1055 AHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1187 bits (3071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1141 (54%), Positives = 785/1141 (68%), Gaps = 99/1141 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
Q T +P + W + + + +AVS A+ L P+ A ++D P
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299
Query: 267 DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 320
DSD +++++ P+ I +E + T+PG + Q+F
Sbjct: 300 DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342
Query: 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
D PKTV +TL +GSS PMSMDFHP+Q +LLLVGT+VGD LW+V S ++L RNFKVWD+
Sbjct: 343 DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401
Query: 381 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402 SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461
Query: 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI
Sbjct: 462 VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581
Query: 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
NESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLTT+DA G
Sbjct: 582 NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639
Query: 621 GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 672
GLP +PRI FNK+GTLLAV ANEN IKIL + NS+ A S+ L K ++
Sbjct: 640 GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699
Query: 673 NPI-----------------STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK- 714
NPI S V AG+ + ++ DVKP IS E+ +KS++ K
Sbjct: 700 NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG-----DVKPRISEESNDKSKIWKL 754
Query: 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE- 773
S+C+SL LP V+ KISRL Y N G AI ALASN +HL+W+W RN+ S +
Sbjct: 755 TEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKA 814
Query: 774 ---VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 830
+ P+L+QP G M ND DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 815 TATLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 873
Query: 831 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 890
T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL F
Sbjct: 874 TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 933
Query: 891 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950
S LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+V
Sbjct: 934 SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVV 993
Query: 951 HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009
HET LAIYEA +L LKQWFP SS PIS ATFSCD ++VF SF+D T+ + ASNL ++
Sbjct: 994 HETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLR 1053
Query: 1010 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1069
CRI ++YL P + ++ P IAAHP +P QFA+GL++G V+V EP E W V PP
Sbjct: 1054 CRINPSSYL-PASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPI 1112
Query: 1070 E 1070
E
Sbjct: 1113 E 1113
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/1130 (55%), Positives = 773/1130 (68%), Gaps = 75/1130 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA N+ELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY D SAR M++ELK++IEANP+ KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 230
NWQH C NP+PNPDI TLFVDH C QL G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239
Query: 231 -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
+ W + + + VS A+ L P+ A ++D P D
Sbjct: 240 QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299
Query: 268 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
SD +S+++ P+ + +E V + P Q+F D PKT
Sbjct: 300 SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350
Query: 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
+TL +G SSPMSMDFHPVQ TLLLVGTNVGD LW+V S ++L +RNFKVWD+ ACSM
Sbjct: 351 MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410 FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470 LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529
Query: 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
+DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589
Query: 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
+KRTYQG + S+ V FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590 VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647
Query: 627 RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTV 678
RI FNK+G LLAV A EN IKIL + NS+ S+ + K ++NPIS
Sbjct: 648 RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707
Query: 679 TGAGIAN----------GSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQS 725
A + G ++N D + DVKP IS E+ +KS++ K PS+C+S
Sbjct: 708 AAAATSAALGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRS 767
Query: 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND----LTLSTEVPPRLYQP 781
L LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + S V P+L+QP
Sbjct: 768 LKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQP 827
Query: 782 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 841
G M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P
Sbjct: 828 SSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886
Query: 842 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 901
A LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG
Sbjct: 887 ANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSG 946
Query: 902 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 961
DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA
Sbjct: 947 ADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEAT 1006
Query: 962 ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1020
+L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL +QCRI +AYL
Sbjct: 1007 KLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSA 1066
Query: 1021 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
+ S +V P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1067 SVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIE 1115
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1184 bits (3064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/1140 (55%), Positives = 780/1140 (68%), Gaps = 95/1140 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 230
NWQH C NP+PNPDI TLFVDH C + G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239
Query: 231 -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
+ W + + + +AVS A+ L P+ ++D P
Sbjct: 240 QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299
Query: 267 DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 317
DSD +++++ P+ I +E V T+PG N PD P
Sbjct: 300 DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344
Query: 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV 377
PKTV +TL +GSS PMSMDFHPVQ +LLLVGTNVG LW+V S +KL RNFKV
Sbjct: 345 ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399
Query: 378 WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 437
WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400 WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497
DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460 DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519
Query: 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557
NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520 NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579
Query: 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+D
Sbjct: 580 VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637
Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 668
A GGLP +PRI FNK+GTLLAV AN+N IKI L T E+NS+ A S+ +
Sbjct: 638 ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696
Query: 669 KLSVNPISTVTG---------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
K ++N +S+ A +N D + DVKP IS EA +KS++ K
Sbjct: 697 KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756
Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS----T 772
PS C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+WPRN+ S
Sbjct: 757 INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816
Query: 773 EVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 832
VP +L+QP G M ND DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817 SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875
Query: 833 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 892
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 876 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935
Query: 893 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952
LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+VHE
Sbjct: 936 VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995
Query: 953 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011
T LAI+EA +L CLKQW P SS PIS ATFSCD ++++ SF+D T+ + ASNL ++CR
Sbjct: 996 TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055
Query: 1012 ILSTAYLRPTTSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
I AYL + S +V P IAAHP + QFAVGL++G V+V EP E W V PP+E
Sbjct: 1056 INPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1182 bits (3059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/1131 (55%), Positives = 779/1131 (68%), Gaps = 92/1131 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K N SL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171
Query: 181 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 172 NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPE------------- 266
Q T +P + W + +T AVS A+ L P+ A + P
Sbjct: 232 QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
Query: 267 DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 324
DSD LS+++ P+ I +E N+P + P S Q+F ++ D PK
Sbjct: 292 DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337
Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 384
TV +TL +GSS PMSMDFHPVQ TLLLVGTNVGD GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338 TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396
Query: 385 MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 444
M + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456
Query: 445 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 504
ND+AFS P KQ+ VITCGDDKTIKVWDA G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516
Query: 505 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564
++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576
Query: 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624
GA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT+IDA GGLP
Sbjct: 577 GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634
Query: 625 NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 676
+PRI FNK+G LLAV N+N IKIL T + N A S+N K +++PIS
Sbjct: 635 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693
Query: 677 -----TVTGAGIANGSVSVNEDPK--------EDVKPEISVEAENKSEVEK-PLFARPSE 722
T AG+A+ + S+ P DVKP I+ E+ +KS+V K + P++
Sbjct: 694 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753
Query: 723 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS----TEVPPRL 778
C+SL LP ++A KISRL + N G AI ALASN +HL+W+W R + S V P+L
Sbjct: 754 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813
Query: 779 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 838
+QP G M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814 WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872
Query: 839 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 898
P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932
Query: 899 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 958
SSG D+Q+ VW DGW Q R LQ P G A S+T +QFH+DQ FL+VHET LAI+
Sbjct: 933 SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992
Query: 959 EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1017
E +L C+KQW P SS PI+ ATFSCD ++V+ F+D T+ + A+NL+++CRI +AY
Sbjct: 993 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052
Query: 1018 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1068
L P +V+P IAAHP +P +FA+GL++G V+V EP E W V PP
Sbjct: 1053 L-PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1102
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/1126 (54%), Positives = 775/1126 (68%), Gaps = 85/1126 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD HD KA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 QTTQSP-----SSWNFSSSMLTDSAVSFVALSL-------------SDPTNKAVTMDRPE 266
Q T SP + W S S + AVS A++L + PTN AV D P
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPS 297
Query: 267 -DSDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSF 314
DSD +S+++ P+ I +E + V T+PG + + +PD
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD--------------- 342
Query: 315 GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L +
Sbjct: 343 ------DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKT 395
Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 396 FKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQH 455
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH
Sbjct: 456 LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515
Query: 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GE
Sbjct: 516 YKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGE 575
Query: 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
SF+VEWNESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT
Sbjct: 576 SFIVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLT 633
Query: 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673
IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++N
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAIN 693
Query: 674 PISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPS 730
I +N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 694 SIPVAERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPE 753
Query: 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT----LSTEVPPRLYQPRHGPQ 786
++A KISRL + N G AI ALASN +HL+W+W RND + VPP+ +QP G
Sbjct: 754 NMRATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-I 812
Query: 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 846
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LA
Sbjct: 813 LMTNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872
Query: 847 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 906
F+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 873 FHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQL 932
Query: 907 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 966
VW+ DGW Q + LQ P G T A S+T +QFH+DQ FL+VHET LAIYE +L C+
Sbjct: 933 CVWNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECM 992
Query: 967 KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1024
KQW P+ SS PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 993 KQW-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051
Query: 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1052 SNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | ||||||
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.734 | 0.713 | 0.557 | 3.3e-312 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.682 | 0.656 | 0.549 | 1.2e-283 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.650 | 0.625 | 0.489 | 3.9e-267 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.319 | 0.470 | 0.365 | 2.3e-86 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.291 | 0.232 | 0.262 | 2.6e-11 | |
| MGI|MGI:1918511 | 476 | Poc1b "POC1 centriolar protein | 0.230 | 0.527 | 0.242 | 3.5e-14 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.188 | 0.665 | 0.243 | 8.3e-14 | |
| TAIR|locus:2172432 | 523 | AT5G43920 "AT5G43920" [Arabido | 0.169 | 0.351 | 0.264 | 9.8e-14 | |
| FB|FBgn0040066 | 361 | wds "will die slowly" [Drosoph | 0.188 | 0.567 | 0.247 | 1.1e-13 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.188 | 0.613 | 0.243 | 1.2e-13 |
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2314 (819.6 bits), Expect = 3.3e-312, Sum P(2) = 3.3e-312
Identities = 461/827 (55%), Positives = 586/827 (70%)
Query: 255 PTNKAVTMDRPE-DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 313
P+N AV D P DSD +S+++ ++++ S GV++ +P P + Q+
Sbjct: 288 PSNSAV--DYPSGDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QT 337
Query: 314 FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIR 373
F D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L +
Sbjct: 338 FKAPD--DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQK 394
Query: 374 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 395 TFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQ 454
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CP
Sbjct: 455 HLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICP 514
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
H KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+G
Sbjct: 515 HYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDG 574
Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
ESF+VEWNESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ +QLL
Sbjct: 575 ESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLL 632
Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSV 672
T IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++
Sbjct: 633 TAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAI 692
Query: 673 NPISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLP 729
N I V +N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 693 NSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS----TEVPPRLYQPRHGP 785
++ KISRL + N G AI ALASN +HL+W+W RND + +PP+ +QP G
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 786 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 845
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT L
Sbjct: 813 -LMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 846 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 905
AF+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 906 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 965
+ VW+ DGW Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 966 LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1023
+KQW P+ S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 992 MKQW-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050
Query: 1024 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1051 NSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2051 (727.0 bits), Expect = 1.2e-283, Sum P(2) = 1.2e-283
Identities = 425/773 (54%), Positives = 528/773 (68%)
Query: 223 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPV 277
P Q T SP + W S S + AVS A++L P+ A + P +
Sbjct: 238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYP 296
Query: 278 RILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGS 334
+E S T P G+S + N+ + P S + S + D PKTVA+TL +GS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
S PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+ CSM + ALV++
Sbjct: 357 S-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 454
P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P K
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
Q+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574
LYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634
+ S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +PRI FNK G
Sbjct: 596 HKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEG 653
Query: 635 TLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANGSV 688
+LLAV NEN IKI+ + + +S K ++N I+ T AG A+ S
Sbjct: 654 SLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSA 713
Query: 689 SV------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISR 739
+V N D + DVKP I+ E+ +KS++ K + PS+C+SL LP ++ KISR
Sbjct: 714 NVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISR 773
Query: 740 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ---FMVNDTTDSN 796
L + N G AI ALASN +HL+W+W RN+ + + L + P M ND ++N
Sbjct: 774 LIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAETN 833
Query: 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 856
+EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IA
Sbjct: 834 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 893
Query: 857 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 916
IGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW
Sbjct: 894 IGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEK 953
Query: 917 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 969
Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+KQW
Sbjct: 954 QRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQW 1006
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1726 (612.6 bits), Expect = 3.9e-267, Sum P(2) = 3.9e-267
Identities = 361/737 (48%), Positives = 483/737 (65%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+ L G+W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
L++ R++E LSKY GD SAR M ELK++IEANP+ + KL FPS K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179
Query: 181 NWQHVHCANPQPNPDINTLFVDHVCQ-------LQETDF--SGQSSESNALPPQTTQSPS 231
NWQH C NP+PNPDI TLF+DH C L + + + SN +P P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPF 239
Query: 232 SWNFSSSMLTDSAVSFVAL---SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVT 288
N + + ++ ++A S S P+ P ++E R + +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMD 299
Query: 289 YPGVSLKNIPDYSPKSSLKKEMF---QSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPV 345
Y + + + E+ S S D P+ V T+ +GS +SMDFHP
Sbjct: 300 YQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV-ISMDFHPS 358
Query: 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405
HTLL VG + G+ LW+V S +K+ FK+W++ ACS++F+ ++V++P +SV RV WS
Sbjct: 359 HHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWS 418
Query: 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465
PDG+LLGV+++KH++ +YAY G SD RQ LEIDAHVG VNDLAF+ P KQ+ V+TCGDDK
Sbjct: 419 PDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDK 477
Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVDY
Sbjct: 478 LIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDY 536
Query: 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
DAPG CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G + + S VV
Sbjct: 537 DAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKK--SAGVVQ 594
Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
FDT +++ LA G+D+ IK W+M+ LLT ++A GGLP PR+ FNK+G LLAV +N
Sbjct: 595 FDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNG 654
Query: 646 IKILETPES-NSVDAAGVLSDNLRKLSVN-PISTVTGAGIANGSVSVNE--DPKEDVKPE 701
KIL + ++ A S K S++ +ST A + ++ E D +P
Sbjct: 655 FKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPT 714
Query: 702 I---SVEAENKSEVEKP 715
+EA +++ +EKP
Sbjct: 715 PIPNGIEAMSRT-MEKP 730
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 2.3e-86, Sum P(2) = 2.3e-86
Identities = 133/364 (36%), Positives = 200/364 (54%)
Query: 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP--RNDLTLSTEVP-P 776
PS+C +L+LP KI+RLTY+ G I ALA + H +W W +N+ P P
Sbjct: 375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKENVYPKP 434
Query: 777 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM 836
RL+QP+ G + M N+ S Q++ CFA+ +YLFS SGG I+++ + F+ + +
Sbjct: 435 RLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASFG 490
Query: 837 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 896
P+P AT F P D ++A+G+DD +I I+ S +V KLEGH +++T L FS N+
Sbjct: 491 SPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNV 548
Query: 897 LVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHET 953
LVSS D ++ +W W T + S + L + THIQF Q L+VH+
Sbjct: 549 LVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHDG 608
Query: 954 HLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012
+ +YE L C QW P +S P I+ AT+S D +++ F G++ I ++ C+I
Sbjct: 609 WIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQI 668
Query: 1013 LSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070
T++ + +TS L VYP +AAHP P Q + GL+NG+V V++P G W P E
Sbjct: 669 NLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPLE 727
Query: 1071 IVGD 1074
GD
Sbjct: 728 DNGD 731
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 95/362 (26%), Positives = 161/362 (44%)
Query: 300 YSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFH--PVQHTLLLVGTNVG 357
+SP+ S+ + +F ++ + +S PK V QT S+ +++ H PV+ +
Sbjct: 711 FSPEGSITRRIF-NYNLSGWSQLPK-VEQTW---SAEQQTLENHLGPVESVVFSPDGKQL 765
Query: 358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417
+G +D K+WD A L +T L G +V + +SPDG LL
Sbjct: 766 VSGSYD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYD 813
Query: 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477
+ + L+ G + Q E H ++ +AF+ K+++ + DD TIK+WD TG
Sbjct: 814 NTIDLWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGEL 868
Query: 478 TYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR 534
+ + H V S+ P K + S S+D IK W + + G G +
Sbjct: 869 QQTLDSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVK 922
Query: 535 -MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593
+A+S +G++L S G+ K WN + G + +T +G SV V F Q+
Sbjct: 923 SVAFSPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQL 975
Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LET 651
++ D IK+W+ +L T G L + F+ +G L +++N IK+ L T
Sbjct: 976 ASSSSDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLAT 1033
Query: 652 PE 653
E
Sbjct: 1034 SE 1035
|
|
| MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 64/264 (24%), Positives = 108/264 (40%)
Query: 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
G D + H + FS CKQI+ T D + +W +R Y + GH
Sbjct: 4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
V SL + N+ + S S D ++ W+ D G ++ A + +SA+G+ L
Sbjct: 62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118
Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
T+ E +S V W+ +R L + V F I++ +D IKIWD
Sbjct: 119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172
Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 666
Q + G + FN NGT +A +++ +KI + + + V S
Sbjct: 173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230
Query: 667 LRKLSVNPISTVTGAGIANGSVSV 690
+ LS +P+ ++G+V +
Sbjct: 231 VNCLSFHPLGNSLVTASSDGTVKM 254
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
|
|
| TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 9.8e-14, Sum P(3) = 9.8e-14
Identities = 54/204 (26%), Positives = 96/204 (47%)
Query: 7 DLVFLILQFLNEEGFTESAHMLERESRFYF---DMKFFEDMILDGKWEDVEQYLSSF--T 61
+ + +++Q L GF SA LE ES+ + D +F E +L G W+ Q L
Sbjct: 19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78
Query: 62 KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121
+DD R +T +Y + KQ E L D++ ALN+L+K G E++ + ++
Sbjct: 79 SMDDTR-NTALYL-VFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136
Query: 122 DDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLN 181
++ E+ + L R+ +++EL+++I PI+ I +RL L+ ++
Sbjct: 137 KEMESGEVDNCL---VLDLRRKLLVELEKLIPL-PIV--------IPERRLEHLVETAVM 184
Query: 182 WQHVHCANPQPNPDINTLFVDHVC 205
Q C + D +L+ DH C
Sbjct: 185 DQIDTCMYHN-SCDAVSLYKDHCC 207
|
|
| FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 54/218 (24%), Positives = 104/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ + +
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+KVW+ TG + +GH Y C + + I S S D ++ W
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WV90 | TPR1_ARATH | No assigned EC number | 0.5424 | 0.9632 | 0.9357 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1088 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-27 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 2e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-06 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)
Query: 331 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 389
++G + + F P L TG D KVWD+ +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45
Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
L V V S DG+ L S ++L+ G R + H V+ +AF
Sbjct: 46 TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101
Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509
S P +I + + DKTIKVWD TG + GH V S+ + F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157
Query: 510 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
IK W D + G +A+S +G +L S + G L W+ S G
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211
Query: 568 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
T +G H N V+ V F + + +D I++WD+ + + T+ N
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263
Query: 627 --RICFNKNGTLLAVIANENRIKI 648
+ ++ +G LA + + I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (220), Expect = 2e-18
Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 29/415 (6%)
Query: 291 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 350
G SL ++ S SS + + S P + L S S+ F P LL
Sbjct: 22 GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80
Query: 351 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409
L G++ G LWD+++G+KL +L SV+++ SPDG+
Sbjct: 81 LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123
Query: 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469
+ +A S + + + + ++ H +V LAFS P ++ D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182
Query: 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529
WD TG + GH PV SL + S S DG I+ W + +
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589
++S +G L S + + + + S L +SV V F
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295
Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 648
+ + D +++WD+ +LL+++ G + F+ +G+LL +++ I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703
+ + S N+ +S +P V +G +G+V + + + +
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)
Query: 801 VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 859
V C A S + L + SG G I ++ + T + + T+ + +A + D +A G
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 919
D TI +++ + E + L GH+ V+ + FS IL SS D I VWDV+ T
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125
Query: 920 RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 971
+ L T D V ++A S F +D T + +++ C+
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174
Query: 972 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004
+ ++ FS D + +S DGT+ + + S
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Query: 798 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 856
V A S + L S+S I ++ V T K + T+ + S+AF+P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 857 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 915
D TI +++ R+ + ++ L GH+ V + FS L+SS D I +WD+ G
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 972
+ T R +GV ++A S +LL + + +++ C++
Sbjct: 212 LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259
Query: 973 SSVPISQATFSCDCRMVFTSFVDGTLSI 1000
+ ++ +S D + + + DGT+ I
Sbjct: 260 HTNSVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-12
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 34 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92
+ + K ++IL G W++ ++LSS R S K+ FE+RKQ F E + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 798 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 856
V A S + L S+S G I L+ + T K + T+ S+AF+P + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 857 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910
G +D TI +++ R+ E + L GH+ VT L +S L S D I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (160), Expect = 5e-11
Identities = 81/455 (17%), Positives = 174/455 (38%), Gaps = 68/455 (14%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 489
L + H ++ +AFS P ++ +++ D TIK+WD G + H + V
Sbjct: 56 LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113
Query: 490 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547
L + + + + S +DG +K W L + T +A+S +G+ L S
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173
Query: 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 606
+ + W+ G T G + VS + F I + D I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 665
++ +LL + +G ++ F+ +G+LLA +++ I++ + S+S+ S
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725
++ ++ +P + +G ++G+V + + + ++++
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328
Query: 726 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHG 784
+S L+++ +G + + +G +W + E
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368
Query: 785 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTAT 843
V + S + + S S G + L+ + T + + + T
Sbjct: 369 ------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416
Query: 844 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878
SL F+P D +A G D+TI +++ ++S
Sbjct: 417 SLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (155), Expect = 2e-10
Identities = 63/344 (18%), Positives = 133/344 (38%), Gaps = 21/344 (6%)
Query: 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG 746
S S K K E+ + S + +LL S V +S L
Sbjct: 6 STSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHE 65
Query: 747 QAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806
+I ++A + + +D T+ +L+ +G + + + +S + +
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTI------KLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119
Query: 807 SKNDAYLFSASGGVISLYI---VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 863
++ L ++S ++ + K I T+ S + TSLAF+P + + D T
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179
Query: 864 ILIYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRS 921
I +++ R+ + +S L GH+ V+ L FS D ++ S D I +WD+ +++ S
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239
Query: 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQA 980
+ V + F D + + +++ + L + S +
Sbjct: 240 GHSDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 981 TFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1024
FS D +++ + DGT+ + + ++ + + P +S
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (154), Expect = 2e-10
Identities = 84/468 (17%), Positives = 172/468 (36%), Gaps = 72/468 (15%)
Query: 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
I ++ D + + D + GH + S+ + + S S DG IK W
Sbjct: 40 ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93
Query: 516 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
D+ + +++A S +G + +S +G + W+ S
Sbjct: 94 LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631
L+ SV+ + F + + D IK+WD+ + L+T+ + + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207
Query: 632 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688
+G LL + + I++ L T + +G + S + +G+ ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265
Query: 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
+ ++++ T + +
Sbjct: 266 RL---------------------------------------WDLRSSSSLLRTLSGHSSS 286
Query: 749 IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 808
+ ++A + + + S++ RL+ G T + V + S
Sbjct: 287 VLSVAFSPDGKLL------ASGSSDGTVRLWDLETGKLLSS--LTLKGHEGPVSSLSFSP 338
Query: 809 NDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 866
+ + L S G I L+ + T K + T+ S S++F+P D V++ G D T+ +
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRL 396
Query: 867 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914
++ + ++ L+GH+ RVT L FS L S D I +WD+
Sbjct: 397 WDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (152), Expect = 4e-10
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)
Query: 801 VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 858
V A S + L ++ G I L+ + T K + + + + +F+P D +++A G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259
Query: 859 MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 917
D TI +++ RS S ++ L GHS V + FS +L S D + +WD++ +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319
Query: 918 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 977
+ +L+ +G + + F D + + I + T +
Sbjct: 320 SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373
Query: 978 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1015
+FS D R+V + DGT+ + + S + +
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (130), Expect = 2e-07
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
+TL SSS +S+ F P LL G++ G LWD+ +G+ L K
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 446
V+ + +SPDGSLL S ++L+ + L+ NV
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
++FS + +S + D T+++WD TGS + +GH + V SL + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431
Query: 507 VDGKIKAWLYDSLGARVDYDAPG 529
D I+ W + V + G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590
G T +A+S +G+ L + + W+ G + RT +G V V
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63
Query: 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 649
+ + D I++WD+ + + T+ G + F+ +G +L+ + + IK+
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
+ + +D + ++ +P T + +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 937
L+GH+ VT + FS +L + GD I VWD++ + T V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56
Query: 938 IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 992
+ D T +++ E C++ +SSV FS D R++ +S
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111
Query: 993 FVDGTLSIHE 1002
D T+ + +
Sbjct: 112 SRDKTIKVWD 121
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)
Query: 321 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 375
D T + G + S+ F P T + + G LWD+ +G+ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177
Query: 376 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411
K+WD+ S +R VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
++++ G + H +V LA+S K+ + + D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 871 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910
S E++ L+GH+ VT + FS L S D I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34
+L LIL++L G+ E+A L++ES
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 873 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910
+++ L+GH+ VT + FS N+L S D + VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
+ + H G V +AFS + + DD T++VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
+ H G V +AFS K + + DD TIK+WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 845 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 896
+AFNP D + +D TI+ + S+ I L+GH+K+V + F A+N+
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 897 LVSSGGDAQIFVWDVD 912
L S+G D + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.82 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.8 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.68 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.64 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.62 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.62 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.62 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.6 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.6 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.59 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.56 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.56 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.55 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.54 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.53 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.52 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.5 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.49 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.49 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.48 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.45 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.44 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.42 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.41 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.4 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.38 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.38 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.35 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.35 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.35 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.32 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.31 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.28 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.28 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.25 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.22 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.21 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.08 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.07 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.05 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.04 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 99.0 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.99 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.97 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.94 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.92 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.92 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.91 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.86 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.84 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.82 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.8 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.77 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.75 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.74 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.72 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.71 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.7 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.68 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.68 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.66 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.66 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.64 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.63 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.59 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.57 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.56 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.55 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.54 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.51 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.5 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.5 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.48 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.47 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.47 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.47 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.44 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.39 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.34 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.3 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.3 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.29 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.28 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.26 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.21 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.2 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.09 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.08 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.07 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.03 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.03 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.03 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.0 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.95 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.93 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.93 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.92 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.91 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.9 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.9 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.89 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.87 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.81 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.79 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.72 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.64 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.62 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.62 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.61 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.61 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.59 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.54 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.52 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.48 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.47 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.46 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.45 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.4 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.28 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.24 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.18 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.13 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.13 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.11 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.1 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.05 | |
| PRK10115 | 686 | protease 2; Provisional | 97.04 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.03 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.01 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.98 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.97 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.95 | |
| PRK10115 | 686 | protease 2; Provisional | 96.93 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.9 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.89 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.88 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.88 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.74 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.73 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.66 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.64 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.41 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.39 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.33 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.33 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.31 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.27 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.27 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.26 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.21 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.2 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 96.17 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.06 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.94 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.85 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.84 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.78 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.68 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.67 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.63 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.63 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.57 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.52 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.47 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.46 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.33 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.27 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.2 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.76 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.61 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.4 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.34 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.22 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.19 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.1 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.76 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.73 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.65 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 93.52 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.5 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.47 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.24 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.23 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.02 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.94 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.9 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.67 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.29 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.25 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.98 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.97 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 91.86 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.69 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.59 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.5 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 91.45 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.31 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.15 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.06 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.05 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.02 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.81 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.36 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.1 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.96 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 89.95 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.89 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.78 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 89.65 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 89.45 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.36 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.3 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.29 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.68 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 88.66 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.64 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.56 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.47 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.46 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 88.39 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 88.37 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.22 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.97 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 87.83 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.75 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 87.71 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 87.7 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 87.64 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 87.55 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 87.39 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 87.29 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 87.05 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.82 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 86.2 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 86.01 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 85.92 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 85.59 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 85.37 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.08 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.97 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.86 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.23 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 82.65 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 82.25 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 81.95 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=540.74 Aligned_cols=493 Identities=20% Similarity=0.305 Sum_probs=415.6
Q ss_pred hHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh---HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhh
Q 001386 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1088)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 81 (1088)
+-|++|+++|+|..+||..|+.+||.|||+.++ ...|.+++++|+|+.++..+..+...+ ......+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 568999999999999999999999999999775 899999999999999999988774333 4444569999999999
Q ss_pred hhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001386 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1088)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~ 161 (1088)
||++..|..-.|+.+||+...++. ++.++|++|+.-+..++.....+... .......|++|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999888885 57788999988776654433332221 112356899999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 001386 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1088)
Q Consensus 162 ~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~d~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1088)
+|++||+.||+||++||+++|.||| +.+..|||.||.|++ .++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------------------------- 212 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQI------------------------- 212 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------ccC-------------------------
Confidence 9999999999999999999999999 667799999999988 333
Q ss_pred CccccccccCCCCCCCccccccCCCCCCCCcCCccccccccccccceecCccCCCcCCCCCCCchhhhcccccCCcccCC
Q 001386 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1088)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~ 321 (1088)
T Consensus 213 -------------------------------------------------------------------------------- 212 (519)
T KOG0293|consen 213 -------------------------------------------------------------------------------- 212 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
|....++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.- ...+.+|..+|..
T Consensus 213 -p~qt~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 213 -PSQTWQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred -CchhhhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 2333467899999999999999999 699999999999999976654221 1238899999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+.||||.++|++++.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||++ |..+...
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence 9999999999999999999999999998766432 24668999999999999 79999999999999965 4445555
Q ss_pred ccCC-ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 482 ~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
++-. ..|.++++ ..||+++++.+.|..|++++.++...+. +.....+|++++.|.||+++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 5433 55888888 5688999999999999999988766554 3344568999999999999998765 3449999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 639 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 639 (1088)
|++....++.+.||......|.++.-..+..++++|++|+.|+||+..+|+++..+.+|.. .|++++|+| +..++|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999996666677665556678999999999999999999999999998865 699999999 6678999
Q ss_pred EeCCCcEEEEeCCC
Q 001386 640 IANENRIKILETPE 653 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~ 653 (1088)
+++||+|+||....
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999997663
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-63 Score=469.68 Aligned_cols=491 Identities=18% Similarity=0.272 Sum_probs=403.8
Q ss_pred hhHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh----HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHh
Q 001386 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1088)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q 79 (1088)
-..||||||.|||+|+.+++++++||+|+++++| ++.|-+.|.+|+||.+++.+++| +++.+-+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4568999999999999999999999999999997 89999999999999999999998 5566678889999
Q ss_pred hhhhhhcCCCHHHHHHHHHhhcccc---CCCCHHHHHHHHHhhcccccccccccccccCCChHHHHHHHHHHHhhcccCc
Q 001386 80 NFFEALDGHDIAKALNILKKDLKDF---APGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANP 156 (1088)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~l~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~ 156 (1088)
..|||+|.++...|..+||. ..|+ .+.++++|-+|+.|+..+.++..+.+. +..++.|+. .|.+.+..++
T Consensus 80 ivlEliELREL~tAR~~lRQ-TdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV 152 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQ-TDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEV 152 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhc-cCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCce
Confidence 99999999999999999997 4444 566899999999999999999888733 246777774 4444444433
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccC
Q 001386 157 ILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFS 236 (1088)
Q Consensus 157 ~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~d~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1088)
- .+||+||+.||+|||+||.++.+.|..+. . ..|+...
T Consensus 153 ~--------VVppSRLlaLlGQaLKWQqHQGLLPPGt~--i------------------------DLFRGkA-------- 190 (508)
T KOG0275|consen 153 H--------VVPPSRLLALLGQALKWQQHQGLLPPGTT--I------------------------DLFRGKA-------- 190 (508)
T ss_pred E--------EcChHHHHHHHHHHhhhHhhcCCCCCCce--e------------------------eeccchh--------
Confidence 3 28999999999999999999877664210 0 1111100
Q ss_pred CCCCCCccccccccCCCCCCCccccccCCCCCCCCcCCccccccccccccceecCccCCCcCCCCCCCchhhhcccccCC
Q 001386 237 SSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316 (1088)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~ 316 (1088)
. ++ ...+.+||.+..
T Consensus 191 --------------A----------~K-------------------~~~Ee~~Pt~l~---------------------- 205 (508)
T KOG0275|consen 191 --------------A----------MK-------------------DQEEERYPTQLA---------------------- 205 (508)
T ss_pred --------------h----------hh-------------------hhHhhhchHHhh----------------------
Confidence 0 00 001123444432
Q ss_pred cccCCCchhheeecc-cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC
Q 001386 317 TSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1088)
Q Consensus 317 ~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 395 (1088)
+.++ |.++.+.|..|||||+ +|++|+.||.|.+||..+|+..+...++.-| -+--+
T Consensus 206 -----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMm 262 (508)
T KOG0275|consen 206 -----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMM 262 (508)
T ss_pred -----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeec
Confidence 2222 5566899999999999 7999999999999999999987654433211 14457
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
..+|.|+.||.|...||+|+.||.|+||.+.+|.+++.+. +.|+..|+|+.||.|+. .+++++.|.++++.-+.+|
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccc
Confidence 8999999999999999999999999999999999998542 38999999999999999 6899999999999999999
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC--CceEEEEEccC-CCEEEEEeeCCC
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSAN-GRRLFSCGTSKE 552 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~-g~~l~~~~~~~~ 552 (1088)
++++.++||...|+...| .++|..+++++.||+|++|+..+.++..++...+ .+|.++..-|. -..+++|..
T Consensus 339 K~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--- 413 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--- 413 (508)
T ss_pred hhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---
Confidence 999999999999999998 5688999999999999999999999888776544 36777777774 456777754
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
.+++++.++. |+.++.+......++...+++.+|.|.++++.++|+.++.|...+|++..++..|.. .+..++-+|
T Consensus 414 -sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHP 489 (508)
T KOG0275|consen 414 -SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHP 489 (508)
T ss_pred -CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCc
Confidence 5568898874 778888876665667788889999999999999999999999999999999998765 578899999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 001386 633 NGTLLAVIANENRIKILE 650 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd 650 (1088)
..+++|+-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=495.97 Aligned_cols=577 Identities=18% Similarity=0.249 Sum_probs=493.9
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcce-eeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
++||++|+ +|++... ..|.+-|+.+++.. ... -.+....+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5777653 56889999999873 211 233567899999999999999999999
Q ss_pred EEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC
Q 001386 419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1088)
.+++|++.+|+.++ .++. |++||.-++|+|.+. .+++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 5655 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc
Q 001386 498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576 (1088)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 576 (1088)
+...|++|..|+++++||+..... ......|...|++++|++|+..+++++. +..+.+||..+.+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996554 7788889999999999999999999986 5569999998877777776654
Q ss_pred ccccEEEEEEeCC-----CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 577 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
.+-++.+-++ +.++++++.+|.+++||.++++++........ +.+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777777777 77999999999999999999998877665432 23566666665666777778889999999
Q ss_pred CCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCc
Q 001386 652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1088)
Q Consensus 652 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 731 (1088)
++.+....+-+..+.|..+.+- .|+.+.++.++..+.+|+++.. ...|.. + .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~i--i--~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQI--I--P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEE--E--e
Confidence 9999999999999999888877 5778899999999999999654 223332 2 3
Q ss_pred cccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC-
Q 001386 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND- 810 (1088)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg- 810 (1088)
+|...|.++....+|..+++++.|.++++|.++.+.. .....-...+|...|.+++++..+
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~------------------~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS------------------KSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcc------------------hhhhhhhhcccccccceeeecccCc
Confidence 5999999999888888999999999999999843322 111111223699999999998765
Q ss_pred CEEEEEe-CCcEEEEEcCCceeE---------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc
Q 001386 811 AYLFSAS-GGVISLYIVMTFKTI---------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 880 (1088)
Q Consensus 811 ~~l~~~~-dg~i~iwd~~~~~~~---------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~ 880 (1088)
.++++++ |.++++|++...+.. .+...|...|.|++++| +.+++|+|+.|.+.+||+++....+..|.|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeC
Confidence 5777777 999999999762211 12347899999999999 889999999999999999999999999999
Q ss_pred ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEE
Q 001386 881 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 959 (1088)
Q Consensus 881 h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd 959 (1088)
|+..|.++.|+|..+.|||+|.|++|+||.+++ ..|++.++||.. .|..+.|-.+|+.|++ +.||-+++|+
T Consensus 504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred CccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 999999999999999999999999999999999 569999999987 8999999999999999 7999999999
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+++++|..+ +.+|..+|.+++-++++.+++||+.||.|.+|.=.|.
T Consensus 576 ikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 576 IKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 999999999 6699999999999999999999999999999975443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=471.97 Aligned_cols=585 Identities=14% Similarity=0.180 Sum_probs=475.8
Q ss_pred cCCCCCCCchhhhcccccCCcccCCCchhh-e-eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeec
Q 001386 297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374 (1088)
Q Consensus 297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~ 374 (1088)
-..|++++..+.-.+.... ..++.-+... + ..-.+-.+.+++++.+||++ +|++++..+.+++|++.+|+.++.
T Consensus 24 ~~~~s~nG~~L~t~~~d~V-i~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs-- 99 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACGDRV-IIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS-- 99 (775)
T ss_pred ceeECCCCCEEEEecCceE-EEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh--
Confidence 3677888877766554210 0111111111 1 11124566899999999998 689999999999999999988765
Q ss_pred eeeeeeccccccceeeeecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCC
Q 001386 375 FKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC 453 (1088)
Q Consensus 375 ~~~~d~~~~~~~~~~~~~~~-h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~ 453 (1088)
++. |++||.-++|+|.|..||+|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|+-
T Consensus 100 -----------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 100 -----------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred -----------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCcc
Confidence 334 99999999999999999999999999999999987665 799999999999999998
Q ss_pred CcEEEEEEeCCCcEEEEeCCCCc-eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCce
Q 001386 454 KQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 532 (1088)
Q Consensus 454 ~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 532 (1088)
....|++|..|+++++||+.++. |+..+..|.+.|+++++.+ |+..+++++.|..+.+||+...+.....+. ...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~ 236 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESL 236 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheech-hhhe
Confidence 76678999999999999999654 5888999999999999954 678999999999999999965544443332 2345
Q ss_pred EEEEEccC-----CCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 533 TRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 533 ~~~~~s~~-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
.++.+-++ |.++++++. ++.+++||..+++++....... ...+..+...+....++..+.|..+.++|.
T Consensus 237 E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 237 ESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred eeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEc
Confidence 66666666 678888875 6679999999998876655443 233666666666777888888999999999
Q ss_pred CCCeeeEEEeCCCCCCCCceEEEe-cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCC
Q 001386 608 NKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
++.+....+-+. ...|..++|- |+.++++++++.+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 311 ~~l~i~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~------------- 374 (775)
T KOG0319|consen 311 DELTIVKQIVGY--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW------------- 374 (775)
T ss_pred cccEEehhhcCC--chhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-------------
Confidence 999988888754 3468888865 67899999999999999998877665 888999999888743
Q ss_pred ceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCc-eEEEeccccceEEEEccC
Q 001386 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~v~iw~~~~ 765 (1088)
..|.++++++.|+++++|.++..... ....-...+|.+.|.+++++..+. ++++++.|+++++|+++.
T Consensus 375 ---------~~g~llat~sKD~svilWr~~~~~~~--~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 375 ---------SSGDLLATGSKDKSVILWRLNNNCSK--SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred ---------ccCcEEEEecCCceEEEEEecCCcch--hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 45678999999999999998322111 111123367999999999987664 678889999999999987
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEE
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATS 844 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 844 (1088)
.+.... ............|...|+|++++|+.+++|+|+ |.+.+||+++.+....++.+|...+.+
T Consensus 444 s~~~~~-------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 444 SKETAF-------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC 510 (775)
T ss_pred cccccc-------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEE
Confidence 433111 112222233446999999999999999999999 999999999999999999999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001386 845 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 924 (1088)
Q Consensus 845 l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~ 924 (1088)
+.|+| ..+.+|++|.|++|+||.+.+..++++|.||+..|..+.|-.+|..|+|++.||.|++|+++++ .|...
T Consensus 511 V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-----eC~~t 584 (775)
T KOG0319|consen 511 VSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-----ECEMT 584 (775)
T ss_pred EEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-----hhhhh
Confidence 99999 7899999999999999999999999999999999999999999999999999999999999994 58888
Q ss_pred CCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcc
Q 001386 925 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 963 (1088)
Q Consensus 925 ~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~ 963 (1088)
++.|.. .|++++.+|++.++++ +.|+.|.+|.-.|.
T Consensus 585 lD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 585 LDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhccc---eeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 898887 8999999999999998 68999999975544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=422.44 Aligned_cols=573 Identities=15% Similarity=0.193 Sum_probs=461.1
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCE
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~ 419 (1088)
+--.|.|..+|.+.+ ..|.+-++++...... +.+|..+++-..|||.|.|+|+|...|.
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCcCc
Confidence 344677887887765 6788888887765433 7889999999999999999999999999
Q ss_pred EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC
Q 001386 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1088)
Q Consensus 420 i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1088)
|+|||....+.+- ..+++...++|..++|++|+++ ++..+ .++-.+++-+++|..+..+.||...|+++.|-|+.
T Consensus 83 vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 83 VRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence 9999998744322 2256778899999999999995 44433 33344445556888899999999999999997764
Q ss_pred CceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccc
Q 001386 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1088)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1088)
. -.+++|+.|++|.+|+=..-+-...+..|..-|.++.|+|||.++++++. ++.+++||-.+|+.+..+.....|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 3 57999999999999977666667778888889999999999999999987 555999999999999999966666
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC-CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
.+.|.+++|+||+..+++++.|.+++|||+.+.+++.++....... .-..+.|. ...|++.+.+|.|.+++......
T Consensus 235 kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 235 KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCCh
Confidence 6999999999999999999999999999999999999998664421 12234444 56899999999999999999999
Q ss_pred ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccccc
Q 001386 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1088)
Q Consensus 657 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1088)
+..+.+|...|++++++ ++++++++++.||.|.-|+...+...+ +...+|...
T Consensus 313 ~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~nq 365 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHTNQ 365 (603)
T ss_pred hheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCccccc-----cccccccce
Confidence 99999999999999998 678999999999999999977554433 333568999
Q ss_pred EEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE
Q 001386 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 816 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1088)
|.+++.+..+. +++.+.|.++++.++..+.... ... .+ ......+++..+++.+++.+
T Consensus 366 I~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~--------------~~~--~~-----lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 366 IKGMAASESGE-LFTIGWDDTLRVISLKDNGYTK--------------SEV--VK-----LGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEeecCCCc-EEEEecCCeEEEEecccCcccc--------------cce--ee-----cCCCceeEEEcCCCCEEEEE
Confidence 99999987666 7888889899988765443210 000 00 23344589999998888888
Q ss_pred eCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee--eeeccccCCeeEEEECCCC
Q 001386 817 SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 817 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~--~~l~~h~~~V~~l~~s~dg 894 (1088)
.++.|.+..-.++ +.++. ..-...+++++| ++..+|+|+.||.|+||.+..+.+. ..+..|.++|+++++|||+
T Consensus 424 ~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 424 CISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred ecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence 8777666652221 12222 334678999999 8999999999999999999876543 3456799999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCC
Q 001386 895 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPIS 973 (1088)
Q Consensus 895 ~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h 973 (1088)
.+||++...+.+.+||+.+.+.... .-.-|.. .|.+++|+|+..++|+ +-|..|.||+++.....-....+|
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~----~w~FHta---kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTN----RWAFHTA---KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecc----eeeeeee---eEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 9999999999999999999764211 1112333 7999999999999999 578999999999877666667889
Q ss_pred CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 974 SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 974 ~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
...|+.+.|- |...|++.+.|..|++|++.
T Consensus 573 ~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 LGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 8889999997 45678999999999999875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=434.73 Aligned_cols=571 Identities=17% Similarity=0.287 Sum_probs=438.7
Q ss_pred cCCCCCCCchhhhcccccCCcccCCCchhheeecc-cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeece
Q 001386 297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1088)
Q Consensus 297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~ 375 (1088)
-+.|+|++..+.. .-.+...+.++.++.-.||. .+...|.+++.||+|. +|++....|...+-++.....++.++
T Consensus 19 nl~ft~dG~sviS--PvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~- 94 (893)
T KOG0291|consen 19 NLVFTKDGNSVIS--PVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN- 94 (893)
T ss_pred cEEECCCCCEEEe--ccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe-
Confidence 3566666432221 11222334455555555554 4556999999999998 66677788999999998888776654
Q ss_pred eeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceeEeccCCCCEEEEEec
Q 001386 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFS 450 (1088)
Q Consensus 376 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s 450 (1088)
...+|.|+.|||||+++|+|.. +.+.||....... .....++.+|-..|.++.|+
T Consensus 95 -------------------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws 154 (893)
T KOG0291|consen 95 -------------------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS 154 (893)
T ss_pred -------------------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEec
Confidence 3478999999999999999854 4599998865432 22345677999999999999
Q ss_pred CCCCcEEEEEEeCCCcEEEEeCCCCce--eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC
Q 001386 451 APCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1088)
Q Consensus 451 ~d~~~l~l~s~s~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1088)
.|.+ ++++|+.|.++++|+++..+- .+.+.+|...|.++-| ..+...+++.+.||.+.+|..........-. .
T Consensus 155 ~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~-~ 229 (893)
T KOG0291|consen 155 DDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKA-E 229 (893)
T ss_pred cCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccc-c
Confidence 9999 899999999999999987665 5778999999998877 4455789999999999999876431111000 0
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
. ..+|.--.-.-.+++....-..|-. ..+.+-. .....+++.+|++..+.+++|-..|...+|.+.
T Consensus 230 k--------d~eg~~d~~~~~~~Eek~~~~~~~k----~~k~~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 230 K--------DEEGSDDEEMDEDGEEKTHKIFWYK----TKKHYLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred c--------cccccccccccccchhhhcceEEEE----EEeeeec--ccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 0 0011000000000000000112211 0011111 112579999999999999999999999999999
Q ss_pred CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC-CcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCc
Q 001386 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1088)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 687 (1088)
...+++.+..... .|..++|+..|..+|.|+.. |.+.||+..+...
T Consensus 296 ~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY------------------------------- 342 (893)
T KOG0291|consen 296 DFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY------------------------------- 342 (893)
T ss_pred CceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------------------------
Confidence 9999999987644 58999999999999999875 7888888764322
Q ss_pred eeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCC
Q 001386 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1088)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 767 (1088)
.+...+|...+.+++++|||+++++|+.||.|++|+
T Consensus 343 ---------------------------------------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn----- 378 (893)
T KOG0291|consen 343 ---------------------------------------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN----- 378 (893)
T ss_pred ---------------------------------------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEe-----
Confidence 223345888999999999999999999999999986
Q ss_pred CCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCC-CeEEE
Q 001386 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSL 845 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l 845 (1088)
..+|.|+.++.- |...|+.+.|+..|+.+++++ ||+|+.||+..++..+++..+.. ...|+
T Consensus 379 -------------~~SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 379 -------------TQSGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred -------------ccCceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 456777777653 999999999999999999999 99999999999999999987664 56889
Q ss_pred EEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001386 846 AFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 924 (1088)
Q Consensus 846 ~~sp~d~~~lasg~~dg-~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~ 924 (1088)
+..| .|.++.+|+.|. .|+||++++|+++..+.||.++|.+++|+|++..|||+|.|.+||+||+-.... ..+.++.
T Consensus 442 avD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~i 519 (893)
T KOG0291|consen 442 AVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLEI 519 (893)
T ss_pred EEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEee
Confidence 9999 789999999887 899999999999999999999999999999999999999999999999976421 1223333
Q ss_pred CCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeec------C-------------CCcCEEEEEEee
Q 001386 925 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------I-------------SSVPISQATFSC 984 (1088)
Q Consensus 925 ~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~------~-------------h~~~v~~l~fs~ 984 (1088)
.. .+..++|+|||+.|++ +-||+|.+||+..+.....+-. + .....+.+++|+
T Consensus 520 ~s-------dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa 592 (893)
T KOG0291|consen 520 RS-------DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA 592 (893)
T ss_pred cc-------ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC
Confidence 22 4889999999999999 6899999999987766633211 1 156789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 985 DCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 985 dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
||.++++|+..+.|++|++.++.++.++.
T Consensus 593 DG~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 593 DGKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred CCCEEEecCCcccEEEEECchhheeeeEE
Confidence 99999999999999999999999988776
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=408.70 Aligned_cols=539 Identities=12% Similarity=0.191 Sum_probs=432.6
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
...+.+|...++-..|||.|. ++|+|...|+|+|||....+.+.... +.--.++|..++|+.
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-----------------f~v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-----------------FQVLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------eeecccccccceeCC
Confidence 566789999999999999997 79999999999999998866554333 333568999999999
Q ss_pred CCCEEEEEeCC--C--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 407 DGSLLGVAYSK--H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 407 dg~~las~~~d--g--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
|+++|++.+.. + .+.+|| +|..+. ++.||...|++++|-|.... .+++|++|++|.+|+-.--+...++.
T Consensus 114 ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99999887643 2 355555 454445 78899999999999998765 89999999999999866566667888
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec---CCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.|..-|+++.| +|||.++++++.||.+.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.+++|
T Consensus 188 ~HskFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KI 261 (603)
T KOG0318|consen 188 EHSKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKI 261 (603)
T ss_pred ccccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEE
Confidence 89999999999 5578999999999999999999999988887 78889999999999999999987 445999
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1088)
||+.+.++++++.....-.+....+.|. +..|++.+.+|+|.+++...+..+..+.+|.. .|++++.+||+++|.+
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYS 337 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEe
Confidence 9999999999987654222334445565 57899999999999999999999999987754 7999999999999999
Q ss_pred EeCCCcEEEEeCCCCCccccc-ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccccc
Q 001386 640 IANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 718 (1088)
|+.||.|.-|+..++..-... ..|...|.+++.+ +...+++.+.|.++++.++...
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccC
Confidence 999999999999988765544 6788888888776 2345778888888888876433
Q ss_pred CCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
.......+.+. ....+++..+++..++.....+.+.+-+... +... ...
T Consensus 395 ~~t~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~---------------------~~~~-----~~~ 443 (603)
T KOG0318|consen 395 GYTKSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK---------------------VSSI-----PIG 443 (603)
T ss_pred cccccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc---------------------ceee-----ccc
Confidence 33322222222 2233888888887666655554443322110 1111 134
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
....+++++|++..+|+|. |+.|+||.+..+... ..+..|.++|++++||| |+.+||+|...+.|.+||+.+.+..
T Consensus 444 y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 444 YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred cccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCcee
Confidence 5678999999999999998 899999999876543 34567999999999999 8999999999999999999998764
Q ss_pred e-eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCe
Q 001386 876 S-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 954 (1088)
Q Consensus 876 ~-~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~ 954 (1088)
. .+.-|+++|.+++|||+..++||||-|-.|.||+++.... .+.....|.. .|+.+.|-.+...+-++.|-.
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~Da~ 595 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQDAN 595 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccCcce
Confidence 3 3445999999999999999999999999999999998542 2444555655 599999998888888899999
Q ss_pred EEEEEcC
Q 001386 955 LAIYEAE 961 (1088)
Q Consensus 955 i~vwd~~ 961 (1088)
|++|++.
T Consensus 596 iK~W~v~ 602 (603)
T KOG0318|consen 596 IKVWNVT 602 (603)
T ss_pred eEEeccc
Confidence 9999864
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=412.98 Aligned_cols=581 Identities=15% Similarity=0.180 Sum_probs=445.7
Q ss_pred Cceeeeec-CCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 336 SPMSMDFH-PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 336 ~V~~v~~s-pdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
.+..+..+ ..|++ +|+ +.-..|.+||+.+|+...... ...-...|+|++-+||.-.||+|
T Consensus 23 N~~~~~~~~~~Gr~-va~-~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRA-VAV-SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcE-EEE-eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 44444443 45774 333 334789999999996543211 22244689999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
..||.|+||+..++.... ++.+|...|+.+.|...|. .++|||.|+.|.+||+-...-+.++.||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875433 7889999999999999999 89999999999999999988899999999999988874
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC---------
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--------- 565 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--------- 565 (1088)
.+..++++.+.|+.|++||+++..+..+...|...++.+++.+ +.+++++.+ ..+.+|++...
T Consensus 159 --~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~d----se~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 --NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTD----SELKVWELAFEDDEKETNRY 230 (888)
T ss_pred --CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecC----CceEEEEeeccccccccccc
Confidence 3457999999999999999999999999999999999999988 677777653 34999988211
Q ss_pred -c--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE--------EeCC---------------
Q 001386 566 -A--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT--------IDAG--------------- 619 (1088)
Q Consensus 566 -~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--------~~~~--------------- 619 (1088)
. ...++... .++....+...++++++++-+.|..+.++.+.+.+.+.. .+.+
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 0 11111111 134445566677788899989999999998875321100 0000
Q ss_pred ---------CCCCCCceEEEecCCC---EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCc
Q 001386 620 ---------GGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1088)
Q Consensus 620 ---------~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 687 (1088)
.....+.++.+-|.++ .|+. -.++++.+|.++......
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~----------------------------- 358 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTS----------------------------- 358 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCC-----------------------------
Confidence 0011344566655432 2222 445566666555310000
Q ss_pred eeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCC
Q 001386 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1088)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 767 (1088)
+.....-.+...+|...|.++++|.+...++++ .++.+++|+.
T Consensus 359 --------------------------------p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~---- 401 (888)
T KOG0306|consen 359 --------------------------------PEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNR---- 401 (888)
T ss_pred --------------------------------ccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEc----
Confidence 000011112224599999999999998755554 4557777764
Q ss_pred CCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEE
Q 001386 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA 846 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 846 (1088)
.+.+|+.+.. ...+.+..|-|.++++++|. .|.+.+||+.+...+.++.+|.+.|.+++
T Consensus 402 --------------~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 402 --------------DTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS 461 (888)
T ss_pred --------------cCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence 4555566542 34788999999999999998 79999999999999999999999999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCC-----ceeeeeec-------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 847 FNPHDNNVIAIGMDDSTILIYNARS-----SEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 847 ~sp~d~~~lasg~~dg~i~lwd~~~-----~~~~~~l~-------~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.+| |++.+++|+.|.+|++||+.- |.....+. .-...|.|+.+||||++||.+=-|.+|+||-+++
T Consensus 462 ~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt- 539 (888)
T KOG0306|consen 462 LSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT- 539 (888)
T ss_pred ecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-
Confidence 999 899999999999999999742 21111111 1346799999999999999999999999999998
Q ss_pred ceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 915 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
....-.+.||.. +|.|+..|||++++++ +.|.+|++|-++-|.|-++++ +|...|.++.|-|+..++++++
T Consensus 540 ----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 540 ----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred ----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeEEEec
Confidence 556677788887 8999999999999999 689999999999999999966 8999999999999999999999
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 994 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 994 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
.|+.|+-||....+.+..+. ++..-..|++.+| +|.++++++.|.+|++|+-.+
T Consensus 612 KD~kvKqWDg~kFe~iq~L~----------~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 612 KDGKVKQWDGEKFEEIQKLD----------GHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CcceEEeechhhhhhheeec----------cchheeeeeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 99999999999998887776 2224456788889 799999999999999999855
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-48 Score=407.91 Aligned_cols=560 Identities=16% Similarity=0.197 Sum_probs=434.3
Q ss_pred ceecCccCCCcCCC--CCCCchhhhcccccCCcccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEec
Q 001386 287 VTYPGVSLKNIPDY--SPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 364 (1088)
Q Consensus 287 ~~~p~~~~~~~~~f--sP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~ 364 (1088)
.++|+....++..+ ||.+.++-..=++....-+..+...+++.+.- +.+|.|+.|||||+ ++|+|.. +.+.||..
T Consensus 48 ~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~f-k~~v~~i~fSPng~-~fav~~g-n~lqiw~~ 124 (893)
T KOG0291|consen 48 YTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNF-KRGVGAIKFSPNGK-FFAVGCG-NLLQIWHA 124 (893)
T ss_pred eeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEee-cCccceEEECCCCc-EEEEEec-ceeEEEec
Confidence 55666665555444 47766665433322222223333344444443 44999999999999 5666543 78999987
Q ss_pred CCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCE
Q 001386 365 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 444 (1088)
Q Consensus 365 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v 444 (1088)
.....-...+| .....+.+|-..|.++.||.|.++|++|+.|.++++|+++..+.+... .+.+|...|
T Consensus 125 P~~~~~~~~pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~-~l~gHkd~V 192 (893)
T KOG0291|consen 125 PGEIKNEFNPF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTY-ALNGHKDYV 192 (893)
T ss_pred CcchhcccCcc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceE-eccCCCcce
Confidence 65432111111 112247789999999999999999999999999999999987764433 688999999
Q ss_pred EEEEecCCCCcEEEEEEeCCCcEEEEeCCC-----------------------Cce-----------eEEeccCCccEEE
Q 001386 445 NDLAFSAPCKQISVITCGDDKTIKVWDAVT-----------------------GSR-----------TYSFEGHGAPVYS 490 (1088)
Q Consensus 445 ~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-----------------------~~~-----------~~~~~~~~~~v~~ 490 (1088)
.++-|..+.. -+++.+.||.+.+|.... ++. .+-+......|++
T Consensus 193 vacfF~~~~~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvta 270 (893)
T KOG0291|consen 193 VACFFGANSL--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTA 270 (893)
T ss_pred EEEEeccCcc--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceee
Confidence 9999999988 799999999999997650 111 0112223467888
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEE
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1088)
.+|++. ...|++|-..|...+|++..-..+..+.....+|..++|+..|.+|+.++. .-+++.+|+.++...+-.
T Consensus 271 a~fH~~--t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 271 AAFHKG--TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLK 345 (893)
T ss_pred eeccCC--ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeee
Confidence 888764 469999999999999999999999999888899999999999999999874 367899999999988888
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
.++|. ..+.+++++|||+++++|++||+|+|||..+|-+..++..|.. .|+.+.|+..|+.+++.+.||+|+.||
T Consensus 346 QQgH~---~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 346 QQGHS---DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ccccc---cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeee
Confidence 88888 8999999999999999999999999999999999999997744 699999999999999999999999999
Q ss_pred CCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCC
Q 001386 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 730 (1088)
Q Consensus 651 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 730 (1088)
+...+..+++..
T Consensus 421 lkRYrNfRTft~-------------------------------------------------------------------- 432 (893)
T KOG0291|consen 421 LKRYRNFRTFTS-------------------------------------------------------------------- 432 (893)
T ss_pred ecccceeeeecC--------------------------------------------------------------------
Confidence 986654443321
Q ss_pred ccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
.......|++..|.|
T Consensus 433 -----------------------------------------------------------------P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 433 -----------------------------------------------------------------PEPIQFSCVAVDPSG 447 (893)
T ss_pred -----------------------------------------------------------------CCceeeeEEEEcCCC
Confidence 012234567777788
Q ss_pred CEEEEEe-CC-cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeeccccCCeeE
Q 001386 811 AYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTG 887 (1088)
Q Consensus 811 ~~l~~~~-dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~-~~~~~l~~h~~~V~~ 887 (1088)
.++..|+ |. .|.+|++++|+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-+. ..+.++. +...+..
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~ 525 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLA 525 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeE
Confidence 8887777 33 499999999999999999999999999999 8999999999999999998654 3445555 7778999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeee----eee--------ecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCe
Q 001386 888 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----RSL--------QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 954 (1088)
Q Consensus 888 l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~----~~~--------~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~ 954 (1088)
++|+|||+.||++.-||.|.+||+..+..... .-+ .....+......++.+++|+||.+|++ |..+.
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 99999999999999999999999887543210 000 000111122246899999999999999 56789
Q ss_pred EEEEEcCcceeeeeeecCC-------------------------------------------------------CcCEEE
Q 001386 955 LAIYEAEELTCLKQWFPIS-------------------------------------------------------SVPISQ 979 (1088)
Q Consensus 955 i~vwd~~~~~~~~~~~~~h-------------------------------------------------------~~~v~~ 979 (1088)
|++|++.++-.++.+...+ .-.|.+
T Consensus 606 iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~s 685 (893)
T KOG0291|consen 606 ICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTS 685 (893)
T ss_pred EEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEE
Confidence 9999999987776642110 124788
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 980 ATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 980 l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
+.|||.|+..|.++..| +.||.+.+.-+.
T Consensus 686 v~fsPtgraFAaatTEG-l~IYsld~~~~F 714 (893)
T KOG0291|consen 686 VQFSPTGRAFAAATTEG-LLIYSLDTTILF 714 (893)
T ss_pred EEECCCcCeeeeecccc-eEEEecCCceEE
Confidence 99999999999998887 788988877554
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=412.12 Aligned_cols=506 Identities=14% Similarity=0.223 Sum_probs=397.4
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
+.+|+|++-+||.- +||+|-.||.|+||+..++..+.+ +.||..+|+++.|+..|.+||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 35899999999987 799999999999999998876654 8899999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEee
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1088)
||.|+.|.+||+-...-.. .+.||...|+..-|..+.+ ++++.+.|+.|++||+++..|..+.-.|.+.++++++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999998654333 6899999999999998777 8999999999999999999999999999999999999
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCce-------------EEecCCCCceEEEEEccCCCEEEEEeeCC---------
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGAR-------------VDYDAPGLGCTRMAYSANGRRLFSCGTSK--------- 551 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------- 551 (1088)
.+ +.+++++.|+.+++|++...... .......+....++..++++++++-+.+.
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s 275 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS 275 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence 54 58999999999999998211000 00011111222333344444444433211
Q ss_pred -----------------------------------------------------------------CCceeEEEEeCCC-C
Q 001386 552 -----------------------------------------------------------------EGESFLVEWNESE-G 565 (1088)
Q Consensus 552 -----------------------------------------------------------------~~~~~i~iwd~~~-~ 565 (1088)
-.++.+..+.+.. +
T Consensus 276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~ 355 (888)
T KOG0306|consen 276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG 355 (888)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence 0012233333332 1
Q ss_pred ce--------eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 566 AI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 566 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
.. ...+.||. ..|.+++++.+...+++|+ .+.+.+|+..+.+++.++... .+.+..|-|.++++
T Consensus 356 ~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 356 KTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCccccccceeeeccch---hheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 11 12344555 8999999998876666554 578999999999999999754 57889999999999
Q ss_pred EEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
++|...|.+.++|+.+...+.+.+.|.+.++.++.. ||+...++++.|.+|++|+..
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~- 484 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFK- 484 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEE-
Confidence 999999999999999988888777777666666655 455556666666666666643
Q ss_pred cCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCC
Q 001386 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNS 797 (1088)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1088)
.-...+.. +-++..+.. ..+. .-
T Consensus 485 -----------------------------------------------l~~~~~gt--~~k~lsl~~---~rtL-----el 507 (888)
T KOG0306|consen 485 -----------------------------------------------LVVSVPGT--QKKVLSLKH---TRTL-----EL 507 (888)
T ss_pred -----------------------------------------------EEeccCcc--cceeeeecc---ceEE-----ec
Confidence 11000000 000000000 0011 14
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001386 798 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 876 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~ 876 (1088)
...|.|+.+||||++||++- |.+++||-+++.+...++.+|.-+|.|+.+|| |++++++|+.|.+|++|-+.-|.|..
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhh
Confidence 67899999999999999997 99999999999999999999999999999999 89999999999999999999999999
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeE
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 955 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i 955 (1088)
.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-.. ...++.+.+|.. .|++++.+|+|.++++ +.|..|
T Consensus 587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred hhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEeccCCcee
Confidence 9999999999999999999999999999999999887 567888899887 8999999999999999 688999
Q ss_pred EEEEcCccee
Q 001386 956 AIYEAEELTC 965 (1088)
Q Consensus 956 ~vwd~~~~~~ 965 (1088)
++|.-.....
T Consensus 659 RlwE~tde~~ 668 (888)
T KOG0306|consen 659 RLWERTDEIL 668 (888)
T ss_pred EeeeccCcce
Confidence 9999765433
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=390.19 Aligned_cols=367 Identities=20% Similarity=0.291 Sum_probs=296.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77899999999999999999999999999999999986544 8999999999999999999 899999999999999
Q ss_pred CCCCcee-EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 472 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
.++|+++ ..+.+|...|++++|.|- -..|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 688999999999999653 13356667777654
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
++.++|||+..++++..+.+|. .+|+|+.|..+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 4448888888888999999999 99999999876 5899999999999999999999999998877 5888888
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
+-|- .|-+|..|.+ +........ ...-+....
T Consensus 297 sTdy-~LRtgaf~~t--------~~~~~~~se----~~~~Al~rY----------------------------------- 328 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHT--------GRKPKSFSE----EQKKALERY----------------------------------- 328 (480)
T ss_pred cchh-hhhccccccc--------cccCCChHH----HHHHHHHHH-----------------------------------
Confidence 7542 2223332211 111110000 000000000
Q ss_pred eeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceee
Q 001386 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVN 790 (1088)
Q Consensus 711 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1088)
+ .+.-..+.++++++.|.++.+|+-..... ++..
T Consensus 329 ---~-------------------------~~~~~~~erlVSgsDd~tlflW~p~~~kk-----------------pi~r- 362 (480)
T KOG0271|consen 329 ---E-------------------------AVLKDSGERLVSGSDDFTLFLWNPFKSKK-----------------PITR- 362 (480)
T ss_pred ---H-------------------------HhhccCcceeEEecCCceEEEeccccccc-----------------chhh-
Confidence 0 00011234577777777777776322211 1110
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 001386 791 DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 869 (1088)
Q Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~ 869 (1088)
. .+|..-|+.+.||||++++|+++ |..|++||..+|+.+.+|.+|-..|..++||. |.++|++|+.|.++++|++
T Consensus 363 -m--tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 363 -M--TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred -h--hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEe
Confidence 1 15999999999999999999999 99999999999999999999999999999999 8999999999999999999
Q ss_pred CCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 870 ~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
++.++...|.||.+.|.++.|+|||+.+++|+.|+.+++|.
T Consensus 439 ~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 439 RTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=392.06 Aligned_cols=333 Identities=20% Similarity=0.320 Sum_probs=304.0
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
..|...+.||.+.|.|++|||+|+ .||+|+.|.++++||+.+..++.+ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 467788999999999999999999 599999999999999999988876 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC-----CCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ ++++++.||+|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987654 6889999999999965 556 7999999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEc-----------cCCC-----
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 542 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~g~----- 542 (1088)
..+.+|..+|+|+.|-. ..++++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwGG---~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGG---EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEcC---CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999999999999832 2499999999999999999988899999999999998877 2233
Q ss_pred --------------------EEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 543 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 543 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
.|++++. +.++.+|+... .+++..+.+|. ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 56699999864 45788888988 89999999999999999999999
Q ss_pred EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceec
Q 001386 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 681 (1088)
|++|+..+|+.+.++.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999976 4579999999999999999999999999999999999999999999999998
Q ss_pred cccCCceeecCCCCCCCCcccccccCccceecc
Q 001386 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1088)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 714 (1088)
|||..+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 7889999999999999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=356.06 Aligned_cols=608 Identities=15% Similarity=0.173 Sum_probs=400.0
Q ss_pred ceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~- 415 (1088)
-..++.+|-.. ++|.- ....|.++|+....+-+ ++..|..+++|+|||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAYP-AGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceeec-cCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566667655 34432 23678899988765443 2566888999999999999999984
Q ss_pred -CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC--CCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 416 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 416 -~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
....++||++.....+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......-+ -...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 56679999999876555 7889999999999999999 7777665 4467789877544332222 346678888
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCc--eEEEEEccCCCEEEEEeeCC-CC--------ceeEEEE
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLG--CTRMAYSANGRRLFSCGTSK-EG--------ESFLVEW 560 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~--v~~~~~s~~g~~l~~~~~~~-~~--------~~~i~iw 560 (1088)
| +.+|.|+++.+ ...|++|.++...... .+...+.. ...+ .+..++++++.-+ .. .+.+.-+
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~l---r~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNL---RFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhcccc---ccchhhhhhhcCcccccceEEEecccceeee
Confidence 8 66888888866 5789999987665211 11111100 0000 0111111111100 00 1112211
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC---------------------
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--------------------- 619 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--------------------- 619 (1088)
. ..+++....... ....+|++.+ .++|++|+.+|.|++|+..+-..+.+++..
T Consensus 247 S--sRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~ 320 (1080)
T KOG1408|consen 247 S--SRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESS 320 (1080)
T ss_pred c--hhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccC
Confidence 1 111111111111 1345666665 579999999999999998765444333211
Q ss_pred -CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccc---cccccCcceeeeecCCCcceeccccCCceeecCCCC
Q 001386 620 -GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1088)
Q Consensus 620 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 695 (1088)
...+....+.|++....|.+...|..++|||+..-..+.. +-.|..-|+.+..-|..
T Consensus 321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~n------------------- 381 (1080)
T KOG1408|consen 321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCN------------------- 381 (1080)
T ss_pred cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccccc-------------------
Confidence 1123345788999899999999999999999986543322 22233333333322210
Q ss_pred CCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCC---
Q 001386 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST--- 772 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~--- 772 (1088)
.|...- +.-|.+- ++++++|++|++|++.........
T Consensus 382 ------------------------------------v~~~~~---aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRN 421 (1080)
T KOG1408|consen 382 ------------------------------------VHSPTA---ACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRN 421 (1080)
T ss_pred ------------------------------------ccCccc---ccCCccc-eeEecCCCcEEEeecccccccceeecc
Confidence 011100 0111111 445555555555554431111000
Q ss_pred ------------CCCC-cccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC
Q 001386 773 ------------EVPP-RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 773 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
+.+. .+-|...+. .-.......+....++++++||+|++||+|+ .|.++||++...+....+..|
T Consensus 422 ils~~l~ki~y~d~~~q~~~d~~~~~-fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 422 ILSANLSKIPYEDSTQQIMHDASAGI-FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred cchhhhhcCccccCchhhhhhccCCc-ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 0000 000111100 0000001113567899999999999999998 799999999999999999999
Q ss_pred CCCeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCC-ceeeeeeccccCCeeEEEECCCC--CEEEEEeCCCcEEEEEcCC
Q 001386 839 SPTATSLAFNPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 839 ~~~i~~l~~sp~--d~~~lasg~~dg~i~lwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~~las~s~Dg~i~iwd~~~ 913 (1088)
..+|.|+.||.. ..++||+++.|.-|+|||+.. ..+++++.+|+..|+++.|.-.| ..++++|.|+.|.+ +...
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~q 579 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQ 579 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhc
Confidence 999999999852 357999999999999999864 56789999999999999998877 77999999997654 3332
Q ss_pred CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCC--CcCEEEEEEeeCCCEEE
Q 001386 914 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVF 990 (1088)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~ 990 (1088)
.. .....+. ...+......+..++..|..+++++ +.|..|+|||+.+|+..+.+...| .+....+...|.|-||+
T Consensus 580 k~-~~g~~f~-r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 580 KA-SSGRLFP-RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred cc-cCceecc-ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 10 0011111 1111111135889999999999999 789999999999999999876554 56777889999999999
Q ss_pred EEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 991 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 991 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
+.+.|.++.++|..+|+++++...+. -..+.+.|.+ |=+.|++++.||+|+||.++
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~GHs----------E~VTG~kF~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMTGHS----------EAVTGVKFLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhcCcc----------hheeeeeecc-cchhheeecCCceEEEEECc
Confidence 99999999999999999998887332 3445689999 77889999999999999994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=350.61 Aligned_cols=539 Identities=14% Similarity=0.181 Sum_probs=377.9
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+.+..|...++|++|||+|+ ++|+|- ....++||++..-..+.. +.+|.-.|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 44567777999999999999 689986 456799999998776655 77899999999999
Q ss_pred CCCCEEEEEeCC--CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE----
Q 001386 406 PDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 479 (1088)
Q Consensus 406 ~dg~~las~~~d--g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~---- 479 (1088)
|.++|+++.+.. -.|.+||+....... -..-...|..++|+.||. ++++++ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 999999988754 468889887543222 123456799999999999 788887 6789999887665110
Q ss_pred ---------Ee------------------------ccC-----------------CccEEEEeeeeeCCceEEEEEecCC
Q 001386 480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 509 (1088)
Q Consensus 480 ---------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg 509 (1088)
.+ .|| ...-+|+++ +.++|++|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 000 011123333 346999999999
Q ss_pred eEEEEECCCCCceEEecC------------------------CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 510 KIKAWLYDSLGARVDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 510 ~i~iwd~~~~~~~~~~~~------------------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.|++++..+.....++.. .-.....+.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 999998765433222110 0113457789999999988865 556999999876
Q ss_pred ceeEEEeccccccccEEEEEEeCC-----------CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
..+......-.|...|+.+.--|- ...+++++.|++|++|++..+..-..+... |. +.+
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRN-----il----s~~- 426 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRN-----IL----SAN- 426 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecc-----cc----hhh-
Confidence 554433332223355666544331 235889999999999999764322222110 11 111
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecc
Q 001386 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1088)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 714 (1088)
++-....|++..+...... -++|
T Consensus 427 -l~ki~y~d~~~q~~~d~~~--------------------------------------------------------~~fd 449 (1080)
T KOG1408|consen 427 -LSKIPYEDSTQQIMHDASA--------------------------------------------------------GIFD 449 (1080)
T ss_pred -hhcCccccCchhhhhhccC--------------------------------------------------------Cccc
Confidence 1111111222111110000 0000
Q ss_pred ccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCC
Q 001386 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD 794 (1088)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1088)
-. ..........+.++++||+|++|++|...|.+++|++..-... ..-
T Consensus 450 ka----------~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~----------------------~~~ 497 (1080)
T KOG1408|consen 450 KA----------LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT----------------------CFM 497 (1080)
T ss_pred cc----------chhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh----------------------hhe
Confidence 00 0000113457899999999999999999999999998654321 111
Q ss_pred CCCCCCeeEEEEec---CCCEEEEEe-CCcEEEEEcC-CceeEEEecCCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEE
Q 001386 795 SNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDN-NVIAIGMDDSTILIYN 868 (1088)
Q Consensus 795 ~~~~~~v~~~~~s~---dg~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~-~~lasg~~dg~i~lwd 868 (1088)
..|+..|.|+.+|. ..++||+++ |.-|+|||.. ...+++++.+|...|+++.|...++ ..+++++.|..|.+-.
T Consensus 498 eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 498 EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV 577 (1080)
T ss_pred ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh
Confidence 25999999999987 357899998 7889999987 4567789999999999999987332 6778888898776543
Q ss_pred cCCceeeeeeccc-----cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 869 ARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 869 ~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
.+...-...+..| ...++.++..|..+++++++.|+.|+||++.+++. .+.+.+...+.+...-+...|.
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCC
Confidence 3321111222222 24688999999999999999999999999999763 3444555444457889999999
Q ss_pred CCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 944 QTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 944 g~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
|.|+|+ ++|+++.++|..+|+|+.+ ..||+..|+.+.|++|.+.|++.+.||.|.||.+...
T Consensus 653 giY~atScsdktl~~~Df~sgEcvA~-m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSGECVAQ-MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccEEEEeecCCceEEEEeccchhhhh-hcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 999999 6899999999999999999 4599999999999999999999999999999998763
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=336.15 Aligned_cols=345 Identities=19% Similarity=0.270 Sum_probs=289.3
Q ss_pred CchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCC--CcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
+|......+. |+.+|.+++|+|-..-++|+|+.|-+.++|++.. ........++ -|...-- .-...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----h~~~~~~--~s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----HCIREGG--KSVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----hhhhhhc--ccCCccCCc
Confidence 5666677777 9999999999997765899999999999999974 1111100000 0000000 011134689
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
++++|+.+|..||+|+.||.+++|+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|....
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999998653 33 6889999999999999999 89999999999999999999999
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.+.-|..+-..+.|.. ...+++.+.||.|+++.+...++..++.+|.+.|.++.|.|.|.+|++++. ++++.|
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999988866666642 247999999999999999999999999999999999999999999999986 667999
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCC---------CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
|+.........+..|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..|. .+|.+++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEEe
Confidence 9999999999999988 899999999965 468999999999999999999999997664 47999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
+|+|+++|+|+.||.|.+|+..+++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999887665443
Q ss_pred eeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 711 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
..+.|..++|+.+|..+.++.+|+.+.+.|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 3345778899999999999999998888775
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=339.79 Aligned_cols=283 Identities=19% Similarity=0.247 Sum_probs=266.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC--CC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GS 409 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d--g~ 409 (1088)
|.+.+|..+.||+|++ ++|||+-+|.++||+..++..+.+ |.||...|.++.|+|. +.
T Consensus 173 gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDL 232 (459)
T ss_pred cCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCcc
Confidence 6677999999999999 799999999999999999977765 8999999999999996 67
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
.+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|.
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~ 307 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVF 307 (459)
T ss_pred ceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccc
Confidence 99999999999999999876665 7889999999999999999 899999999999999999999999999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
+++|+ +||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..||+|+. +++++|||++....+.
T Consensus 308 ~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 308 SIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELY 381 (459)
T ss_pred eeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccce
Confidence 99995 47889999999999999999999999999999999999999999999999975 6679999999999999
Q ss_pred EEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
++.+|. +-|+.++|+| .|.+|++++.|++++||...+..+++.+.+|.+ .|.++.+++|+..+++++.|+++++
T Consensus 382 ~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 382 TIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred eccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeee
Confidence 999999 9999999998 688999999999999999999999999998865 6999999999999999999999999
Q ss_pred Ee
Q 001386 649 LE 650 (1088)
Q Consensus 649 wd 650 (1088)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=333.22 Aligned_cols=580 Identities=16% Similarity=0.164 Sum_probs=425.5
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCE
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~ 419 (1088)
..|..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++-..+- +.+++. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~--vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDY--VYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCce--EEEecC-cE
Confidence 555555666888888999999999988776653 23477889999876544 444332 33
Q ss_pred EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-cee----EEeccCCccEEEEeee
Q 001386 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 420 i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~----~~~~~~~~~v~~~~~~ 494 (1088)
|.+|.- |+.++. .+.+|.+.|..+.- -|. .++++..++.+.||+...+ ..+ ..++.....|+++. |
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666643 433332 46678777776653 356 6888999999999998874 221 11222233377664 5
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+++..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5555567999999999999999999999999999999999999999999999876 566999999999999999977
Q ss_pred ccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeeeEEEe-CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
. +.|+.++|..||+.+++ |+..|.+.+||++..+.+..+. .| ...+....|.|....+++++.|+.+++|=.+
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEee
Confidence 6 89999999999987665 5567999999999988877766 34 3358889999999999999999999988655
Q ss_pred CC----CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec
Q 001386 653 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1088)
Q Consensus 653 ~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 728 (1088)
++ +.++...+
T Consensus 319 ~~dg~pR~LR~R~G------------------------------------------------------------------ 332 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGG------------------------------------------------------------------ 332 (910)
T ss_pred CCCCcchheeeccC------------------------------------------------------------------
Confidence 33 22333333
Q ss_pred CCccccccEEEEEEe-cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe
Q 001386 729 PSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 807 (1088)
Q Consensus 729 ~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1088)
|..+..++.|. .+|..+++++.|++.+.+++........... ......++..-.. .+..-.-.+|..+++.
T Consensus 333 ----Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~---~~~~~~~kk~~~~-~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 333 ----HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ---LHNKKRAKKVNVF-STEKLKLPPIVEFAFE 404 (910)
T ss_pred ----CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc---ccccccccccccc-chhhhcCCcceeeecc
Confidence 55555555554 4556666666666665555433222111000 1111111100000 0000023355566654
Q ss_pred cCC----CEEEEEe--CCcEEEEEcCCcee-EEEec-----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 808 KND----AYLFSAS--GGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 808 ~dg----~~l~~~~--dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
-.. .-++++. +..++.|+...... ...+. .....+++++.++ .|++.+.|+..|.|-+|++++|-..
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeee
Confidence 321 2244443 56799999986554 23333 2336889999999 9999999999999999999999988
Q ss_pred eee---ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-Ee
Q 001386 876 SKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 951 (1088)
Q Consensus 876 ~~l---~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~ 951 (1088)
..+ ++|.++|++++...-++.+++++.+|.+++||.+... .+...+-. ..+.++..+.....+++ ..
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-----l~~~l~l~----~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-----LKKSLRLG----SSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-----eeeeeccC----CCcceeeeeehhhhhhhhcC
Confidence 888 5899999999998888999999999999999999844 22222211 24788888888888888 46
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceE
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
|-.|+++|+.+.+.++. +.||+..|++++|||||++|++++.|++|++||+.++.++-.+... .....
T Consensus 555 df~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~~s 622 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPCTS 622 (910)
T ss_pred ceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Cccee
Confidence 67899999999999888 5599999999999999999999999999999999999999776522 12467
Q ss_pred EEECCCCCCEEEEEeCC-CcEEEEeC
Q 001386 1032 IAAHPLKPTQFAVGLTN-GEVYVIEP 1056 (1088)
Q Consensus 1032 ~~~~p~d~~~l~~~~~d-g~v~~w~l 1056 (1088)
++|+| +|++|+|+..| .-|++|.=
T Consensus 623 ls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 623 LSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEECC-CCCEEEEEEecCceEEEEEc
Confidence 99999 89999999999 68999964
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=330.24 Aligned_cols=643 Identities=15% Similarity=0.174 Sum_probs=434.3
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC---EEEEEeC
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 416 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~---~las~~~ 416 (1088)
..|.|.+ ++|.|.. ..|.+||........+ +.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t~-------------------l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGAG-PAIAVADPEKILIVTT-------------------LDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecCC-ceEEEeCcccceeEEe-------------------ccCCccceEEEEEcccccccceEEEccC
Confidence 3446665 4666654 7899999877644333 899999999999999888 8999999
Q ss_pred CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEEeccCCccE--EEEe
Q 001386 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV--YSLC 492 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~~v--~~~~ 492 (1088)
|+.|++|.++. +.+.....+.+|...+.|+. .... ...+...|+.+.+||.+..+ ++..+.-..+.+ .+++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999993 33455557778766665554 3222 22333689999999985555 333333222333 3344
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCC--CceEEecCCCCceEEEEEccCCC---EEEEEeeCCCCceeEEEEeCCCCc-
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 566 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~~~~~~~~i~iwd~~~~~- 566 (1088)
+.++++.-.++.|+.+..|.++.-.+. .....+.+|...|.+++|...+. +|++++ .+.+|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 445444456777788888888865533 34567889999999999987655 444443 37789999765332
Q ss_pred --------------------eeEE----------EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeE
Q 001386 567 --------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 614 (1088)
Q Consensus 567 --------------------~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~ 614 (1088)
.... +.||. +.|+++.|+|.+..|++++.|.++.+|...+. -.+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 1111 12555 99999999999999999999999999987654 3333
Q ss_pred EEeCC---CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC---CcccccccccCcceeeeecCCCcceeccccCCce
Q 001386 615 TIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1088)
Q Consensus 615 ~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 688 (1088)
..... +.........|+|+++.+++-+..|..++|..... .....+.+|.+.|+.+++.
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~--------------- 370 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD--------------- 370 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence 33322 12234678999999999999999999999994332 3344678899999999998
Q ss_pred eecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCC
Q 001386 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1088)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 768 (1088)
|.|.++++.+.|.+-|++-.-.. ......+.-| ..|...++|+++-+....+++++.+..+++|+.+..-.
T Consensus 371 -------psGeflLsvs~DQTTRlFa~wg~-q~~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 371 -------PSGEFLLSVSLDQTTRLFARWGR-QQEWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred -------CCCCEEEEeccccceeeeccccc-ccceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 56788999999999999875421 1222222222 35889999999998766788999999999998653211
Q ss_pred CCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEE-EEEeCCc--E-----------EEEEcC-------
Q 001386 769 TLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGV--I-----------SLYIVM------- 827 (1088)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~~dg~--i-----------~iwd~~------- 827 (1088)
. ......|.+...... ......|..+-.|.+.-+. .+-+.+. + .+....
T Consensus 442 ~--------~l~~i~g~~~~~~~~--~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 442 K--------SLMAICGKCFKGSDE--LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred H--------HHHHHhCccccCchh--cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 0 000001111111000 0122233333333322221 1111111 0 001000
Q ss_pred --CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEE
Q 001386 828 --TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 900 (1088)
Q Consensus 828 --~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~ 900 (1088)
....++.+.+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|+++
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred hccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe
Confidence 1123456779999999999999 899999987654 79999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcc--eeeee-eecCCCcC
Q 001386 901 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPISSVP 976 (1088)
Q Consensus 901 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~--~~~~~-~~~~h~~~ 976 (1088)
|.|+++.+|........... +...+.|.. -|.++.|+||+.++|+ +.|++|.+|..... +.+.. -...++..
T Consensus 591 sRDRt~sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~a 666 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLA 666 (764)
T ss_pred ecCceEEeeeeecccchhhh-hccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCc
Confidence 99999999998664322222 333445544 6899999999999999 68999999999887 55554 33456899
Q ss_pred EEEEEEee-C----CCEEEEEeCCCcEEEEEcCCCceEEEec----cccccCCCCccccccceEEEECCC---------C
Q 001386 977 ISQATFSC-D----CRMVFTSFVDGTLSIHEASNLEVQCRIL----STAYLRPTTSCLHVYPHAIAAHPL---------K 1038 (1088)
Q Consensus 977 v~~l~fs~-d----g~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~---------d 1038 (1088)
|+++++.| + +..+++|-..|.|.+|....-....... ...--+..++. .....+.|.|. .
T Consensus 667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~aV~rl~w~p~~~~~~~~~~~ 744 (764)
T KOG1063|consen 667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPD--SAVNRLLWRPTCSDDWVEDKE 744 (764)
T ss_pred eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChH--HhhheeEeccccccccccccc
Confidence 99999987 2 2367888899999999966221111100 00000111111 22345677762 1
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001386 1039 PTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1039 ~~~l~~~~~dg~v~~w~l~ 1057 (1088)
...|++|++|.+++++++.
T Consensus 745 ~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 745 WLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeEEeeecccceeEEeecc
Confidence 2357999999999999874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=305.61 Aligned_cols=298 Identities=19% Similarity=0.282 Sum_probs=255.9
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+.-+|++|+++|+.++..+.+..++.+++.|.++.+|++.......-. ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEc
Confidence 456789999999999999998889999999999999999765332211 112388999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC-
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH- 484 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~- 484 (1088)
+||.+.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|++|++||+. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999996555 6889999999999999999 69999999999999955 4555555443
Q ss_pred -CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 485 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
.+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999987899999999999999999999999999999999999999999999999875 5569999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC-------CCCCceEEEecCCCE
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 636 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 636 (1088)
.++.+..+... ..|.+++|+|+.-.| ++..+..|+|||++++..+..+..... .+...+++|++||..
T Consensus 223 ~~k~lysl~a~----~~v~sl~fspnrywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSLEAF----DIVNSLCFSPNRYWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEeccCC----CeEeeEEecCCceeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998877654 489999999985444 444556699999999998887765421 234567899999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 001386 637 LAVIANENRIKILETP 652 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~ 652 (1088)
|.+|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=326.93 Aligned_cols=480 Identities=16% Similarity=0.263 Sum_probs=359.2
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+++..|++.|.++.|+|... .+.++-..|.|.|||.++...++.+. -..-+|++..|-+-
T Consensus 7 rk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksfe-------------------V~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSFE-------------------VSEVPVRAAKFIAR 66 (794)
T ss_pred hHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeeee-------------------ecccchhhheeeec
Confidence 55667999999999999998 56677788999999999998887633 26688999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccCCc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA 486 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~ 486 (1088)
.+++++|++|..|+||+.++++.++ .+..|..-|.+++.+|... +++|+|.|-+|++||++.+ .+.++|+||..
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred cceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 9999999999999999999998766 7889999999999999998 8999999999999999875 67899999999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCC--CEEEEEeeCCCCceeEEEEeCCC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.|.+++|.|. |...+++++.|++|++|.+....+..++.+|...|.|+.+-+-| .+|++++. +..+.+||.++
T Consensus 142 yVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQt 216 (794)
T KOG0276|consen 142 YVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQT 216 (794)
T ss_pred EEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecch
Confidence 9999999987 45799999999999999999999999999999999999998755 68888875 67799999999
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
..+++++.||. ..|+.++|+|.-..+++|++||+++||+..+.+...++.... ..+.|++-.+.++.+++|.+.|
T Consensus 217 k~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 217 KSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEG 291 (794)
T ss_pred HHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCC
Confidence 99999999999 999999999999999999999999999999998888887553 4689999999888999999888
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.+.+ .+....+...+ . +.|+ .+|...
T Consensus 292 ~i~v-~lgreeP~vsM------------d----------------------~~gK-----------Iiwa~~-------- 317 (794)
T KOG0276|consen 292 SVTV-KLGREEPAVSM------------D----------------------SNGK-----------IIWAVH-------- 317 (794)
T ss_pred cEEE-EccCCCCceee------------c----------------------CCcc-----------EEEEcC--------
Confidence 7765 22222111111 1 0111 112110
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC-CCCCCeeE
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS-NSQEAVPC 803 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 803 (1088)
+.|..+-. -+.+..+ ++..|+.+-. ..++. ...-....
T Consensus 318 ----------~ei~~~~~-------ks~~~~~-----------------------ev~DgErL~L-svKeLgs~eiyPq~ 356 (794)
T KOG0276|consen 318 ----------SEIQAVNL-------KSVGAQK-----------------------EVTDGERLPL-SVKELGSVEIYPQT 356 (794)
T ss_pred ----------ceeeeeec-------eeccCcc-----------------------cccCCccccc-hhhhccccccchHH
Confidence 01111100 0000000 1111111100 00000 01112345
Q ss_pred EEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC
Q 001386 804 FALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
++-+|+|+++++++||.-.||..-..+ ....+......|++ |....|+-..++.|+++ ++.+....+...-.
T Consensus 357 L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~ 428 (794)
T KOG0276|consen 357 LAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS 428 (794)
T ss_pred hccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc
Confidence 788999999999999999998743222 12445667889999 76777777778889998 66666555542111
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 961 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~ 961 (1088)
+..--.|.+|...+. +.+++||.++++. ++..+-. .-++.|+.+|.+++++.|...+++...
T Consensus 429 ----~e~i~gg~Llg~~ss-~~~~fydW~~~~l-----VrrI~v~------~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 429 ----AEGIFGGPLLGVRSS-DFLCFYDWESGEL-----VRRIEVT------SKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred ----eeeecCCceEEEEeC-CeEEEEEcccceE-----EEEEeec------cceeEEecCCCEEEEEecCceeEEEec
Confidence 111123555665554 5599999998653 3333221 347999999999999888876666544
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=330.42 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
|.+.+|..+.||+|++.||+|+.+|.++||+..+...+. +|.+|...|.++.|+|....+.++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 466899999999999999999999999999999875444 79999999999999998432379999999999999999
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
+..++..+.+|...|..++|+| +|++|+|++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6789999999999999999999999999999999999999999999999986
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 632 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 632 (1088)
+..-+|||+++|.++..+.+|. .+|.++.|+|+|-.+++|+.|++++|||++..+.+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 5568899999999999999998 9999999999999999999999999999999999999987755 699999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
.|.+|++++.|++++||...+..+++.+.+|.+.|.++.++ +++..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999887 67899999999999999
Q ss_pred cc
Q 001386 713 EK 714 (1088)
Q Consensus 713 w~ 714 (1088)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 96
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=302.10 Aligned_cols=294 Identities=17% Similarity=0.245 Sum_probs=267.6
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
..++|+||...|.++.|++|.+ .++++|.||.+.|||.-|....+-. +-....|-.+||+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~hai-------------------pl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAI-------------------PLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEE-------------------ecCceeEEEEEEC
Confidence 3489999999999999999999 5899999999999999998877653 3367899999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCC---cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~---~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
|.|+++|.|+-|+...||++.+.+ ..+..+++.+|++.+.|+.|.+|++ |+|+|.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 999999999999999999998652 2344457899999999999999876 8999999999999999999999999
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|.-+++|+. +++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999775 7789999999999999999999999999999999999999999999999975 667999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+..+.+..+.... ....|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||.-+++|+.
T Consensus 259 RaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 259 RADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred cCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecch
Confidence 9999988887443 446899999999999999999999999999999999999997765 6999999999999999999
Q ss_pred CCcEEEEe
Q 001386 643 ENRIKILE 650 (1088)
Q Consensus 643 dg~i~iwd 650 (1088)
|..++||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=330.25 Aligned_cols=622 Identities=13% Similarity=0.104 Sum_probs=409.6
Q ss_pred heeecccCCCCceeeeecCCCC--eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~--~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+|.||..+|+|+.|-|+.+ -.+++|+.|+.|++|.+.......... +.+|...+. +
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~~--c 106 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKECV--C 106 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeEE--E
Confidence 4467899999999999998775 147899999999999998443332211 445555554 4
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC--ceeEE
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYS 480 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~--~~~~~ 480 (1088)
++...........|+++.+||.+..+... ....+..-..-..|+++.++.+..+++.|+.+..|.++.-.++ +.+..
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 44333333333789999999996554111 0111222222345677778666557788888888888875544 34578
Q ss_pred eccCCccEEEEeeeeeCC-ceEEEEEecCCeEEEEECCCCC-----------------c----e----------EEecCC
Q 001386 481 FEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------A----R----------VDYDAP 528 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-----------------~----~----------~~~~~~ 528 (1088)
+.||...|.+++|..... ..+|+++|.|..||+|.+.... . . ..+.+|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 899999999999975544 5689999999999999764322 0 0 012378
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--ceeEEEeccc--cccccEEEEEEeCCCCEEEEEeCCCcEEE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1088)
...|+++.|+|.+..|++++. +.++.+|...+. --+...+--. +.........|+|+++.+++-+..|..++
T Consensus 267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 889999999999988888876 445999987643 3333222111 11245788899999999999999999999
Q ss_pred EEcCC-CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC----CcccccccccCcceeeeecCCCcce
Q 001386 605 WDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 605 wd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~ 679 (1088)
|...+ .......-..++...|..++|+|.|.+|++.+.|.+-|++-.-.. ..+...+.|...++|+++-+.
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~---- 418 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE---- 418 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC----
Confidence 98332 333444444466778999999999999999999999999865522 234445667778888887631
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec------CCccccccEEEEEEecCCceEEEec
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL------PSKVKANKISRLTYNNGGQAIFALA 753 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~s~~g~~l~~~~ 753 (1088)
...+++|.....+|+++....--..+..+.- ........|..+-.|.+--+.- -.
T Consensus 419 ------------------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~ 479 (764)
T KOG1063|consen 419 ------------------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ET 479 (764)
T ss_pred ------------------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-cc
Confidence 3345666667777887743211100000000 0011222333333333221100 11
Q ss_pred cccce-EEEE-ccCCCCCCCCCCCCcccCCCCCCcce-----eeccCCCCCCCCeeEEEEecCCCEEEEEeC------Cc
Q 001386 754 SNGVH-LMWR-WPRNDLTLSTEVPPRLYQPRHGPQFM-----VNDTTDSNSQEAVPCFALSKNDAYLFSASG------GV 820 (1088)
Q Consensus 754 ~dg~v-~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d------g~ 820 (1088)
.+|.. ..|. ...... ...+..+....+++ ....+..+|...|.+++.+|+|+++|++.. ..
T Consensus 480 ~~G~~~~~~~et~~~~~------p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 480 NTGGEAAVCAETPLAAA------PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred ccccccceeeecccccC------chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 11111 1111 000000 00000111111011 111122369999999999999999999962 34
Q ss_pred EEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee----eeeeccccCCeeEEEECCCCCE
Q 001386 821 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNI 896 (1088)
Q Consensus 821 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~ 896 (1088)
|++|+..+...+..+.+|+-.|+.++||| |+++|++.+.|.++.+|....... ....+.|+.-|.+..|+||+.+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 99999999999999999999999999999 899999999999999999854321 2346789999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC----CC-EEEEE-eCCeEEEEEcCcceee----
Q 001386 897 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD----QT-RFLLV-HETHLAIYEAEELTCL---- 966 (1088)
Q Consensus 897 las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d----g~-~l~~~-~d~~i~vwd~~~~~~~---- 966 (1088)
+||+|.|++|++|......-. .+... ........|+.+++.|- .. .+++| ..|.|.+|....-...
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~ 708 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG 708 (764)
T ss_pred eEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce
Confidence 999999999999999875211 11110 11122246888888762 22 45556 5589999985511110
Q ss_pred -------eeeecCCCcCEEEEEEeeC----------CCEEEEEeCCCcEEEEEcC
Q 001386 967 -------KQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 967 -------~~~~~~h~~~v~~l~fs~d----------g~~l~s~s~dg~v~vwd~~ 1004 (1088)
..-..+|...|..+.|+|- ...|++|++|..++++++.
T Consensus 709 ~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 709 TFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 1112356889999999974 2347999999999999864
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=342.76 Aligned_cols=278 Identities=17% Similarity=0.269 Sum_probs=243.7
Q ss_pred cCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceee---eceeee---------eecccccc
Q 001386 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVW---------DIGACSML 386 (1088)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~---~~~~~~---------d~~~~~~~ 386 (1088)
...+|..|..+...-...++|..||+|++ +||.|..|..|++|.+...+.... ..+..- |.......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 67789999999987777999999999999 899999999999999986431110 000000 11111122
Q ss_pred ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc
Q 001386 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1088)
Q Consensus 387 ~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~ 466 (1088)
.....+.||.++|..+.|+||.++|++++.|+++++|.+.+..++- .++||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999986554 6889999999999999998 8999999999
Q ss_pred EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001386 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 546 (1088)
.++|......+++.+.+|-+.|.|+.|+|+ ..++++||.|.+||+||+.++..+..+.+|..+|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 999999999999999999999999999875 469999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 975 6669999999999999999998 999999999999999999999999999987543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=324.51 Aligned_cols=554 Identities=14% Similarity=0.167 Sum_probs=407.0
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
..+.++|+|++-+.+-- ++|.| ..|.+|. .|+.+. ....+|.+.|.-+. |-|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~--~fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIR------------------HTTLLHGAKVHLLL--PFGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEE------------------EEeccccceEEEEe--eecce
Confidence 36777999998877653 34433 4566654 443332 12556777777665 34889
Q ss_pred EEEEeCCCEEEEEEccCC-CcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~-~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
++++..++.+.||+..++ +.......+. .....|+++. +|..--..++.|+.+|.+.+|++++++.++++.++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999985 2211111222 2222376664 554322258889999999999999999999999999999
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
+++.-+|.- ..++.|..+|+|.+++++..+.+..+....+.|++++|..||..+.+.+. ..|.+.+||+...+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence 999775544 58999999999999999999999999988899999999999998777653 2566999999988887
Q ss_pred EEEe-ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC--C--eeeEEEeCCCCCCCCceEEEe-cCCCEEEEEeC
Q 001386 569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V--QLLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 642 (1088)
Q Consensus 569 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~--~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 642 (1088)
.... .|. +.+....|-|....+++++.|..+++|=.++ | +.++.-.+ +..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G--Hs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG--HSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC--CCCCchheeeeccCcEEEEeccc
Confidence 7766 454 7899999999999999999999998885543 3 23333333 34467889988 68999999999
Q ss_pred CCcEEEEeCCCCCccccccc-------ccCcce---eeeecCCCcceeccccCCceeecCC-CCCCCCcccccccCccce
Q 001386 643 ENRIKILETPESNSVDAAGV-------LSDNLR---KLSVNPISTVTGAGIANGSVSVNED-PKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 643 dg~i~iwd~~~~~~~~~~~~-------~~~~v~---~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~i~ 711 (1088)
|++++.+++.....-+.+.. ..-.+. ...+.| .. ..++... .....+.+...-.+...+
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~---i~-------~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP---IV-------EFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc---ce-------eeecccchhhhhcceeEEecCcceEE
Confidence 99999988764322111111 000000 000000 00 0011000 022344455555566788
Q ss_pred eccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec
Q 001386 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND 791 (1088)
Q Consensus 712 vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1088)
.|+......++...-..+.......+++++.++.|++.+.|.+.|.|.+|+++.+-...+.
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf------------------- 486 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF------------------- 486 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc-------------------
Confidence 8997655544433322222234567899999999999999999999999998876542111
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001386 792 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 870 (1088)
Q Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~ 870 (1088)
.....|..+|+.++...-++.+++++ +|.+.+||.++...+..+. -...++++..+. ...++|.+..|-.|+++|..
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEch
Confidence 11235999999999988888888887 9999999999888777776 556788888888 67899999999999999999
Q ss_pred CceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 871 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 871 ~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.......+. .+..++.|||+|.+||++
T Consensus 565 t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 565 TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSFSPNGDFLATV 635 (910)
T ss_pred hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEECCCCCEEEEE
Confidence 99999999999999999999999999999999999999999997654433222 257899999999999995
Q ss_pred -eC-CeEEEEEcC
Q 001386 951 -HE-THLAIYEAE 961 (1088)
Q Consensus 951 -~d-~~i~vwd~~ 961 (1088)
.| ..|++|.=.
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 34 579999743
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=291.25 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=265.1
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ +++.|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 389999999999999999999999999999999998875444 4556678999999999999 89999999999999
Q ss_pred eCCCC------ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc-CCCE
Q 001386 471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1088)
Q Consensus 471 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 543 (1088)
++.+. ...+.+.+|.+.+.++.|.. ...|++++.|.+..+||+++++....+.+|.+.|.+++++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99855 34567899999999999854 34899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
+++++. +...++||++.+.++++|.+|. ..|++++|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999986 4559999999999999999999 999999999999999999999999999999999999998877777
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.|++++||..|++|.+|..|.++.+||.-.++....+.+|.+.|.++.++ |||..+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999998 67888999
Q ss_pred cccCccceecc
Q 001386 704 VEAENKSEVEK 714 (1088)
Q Consensus 704 ~~~d~~i~vw~ 714 (1088)
|+-|.++++|.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=318.36 Aligned_cols=585 Identities=16% Similarity=0.239 Sum_probs=406.5
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
++..+..|..++|+|... ++.++-.+|.|.+||..-|.++.. +.+|.++|+.++|+|++.
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence 445567999999999998 677888899999999999988865 778999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
++++|++|..|+||+.++.+++. ++.||-..|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.
T Consensus 65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999987766 7889999999999999888 899999999999999999999999999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
|..|+|..| .++++|.|.+||+||+...+....-.+ ++.=...+..+. .-++-....-...
T Consensus 140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH 200 (1202)
T ss_pred eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence 999998765 899999999999999976543322211 000001111110 0011111122345
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
.+.||. ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...++...|.++-|+|...++++.+.|++|+||
T Consensus 201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 678888 88999999999999999999999999998765544333334556689999999999999999999999999
Q ss_pred eCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCC-----CCCCCcccccccCccceeccccccCCCcce
Q 001386 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
|+.....+++++...+..+.++.+|.....+.+-..|.+.|-... .-.++.++-.- |..|+-+|+.+.+.....
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA 356 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeE
Confidence 999999999999999999999999999999999999988874431 12233333333 778888887765555555
Q ss_pred eeecCCccccccEEEEEEecCCceEEEec--cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCee
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 802 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1088)
.+..+.. ...++.++.++|....++.++ .+|...++.++....... .+... -......
T Consensus 357 ~lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~-----------~~~~~--------~k~tG~~ 416 (1202)
T KOG0292|consen 357 SLRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS-----------DGKDV--------KKGTGEG 416 (1202)
T ss_pred eccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC-----------Cchhh--------hcCCCCc
Confidence 5443332 335778899999877665553 356666766654322000 00000 0111222
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc
Q 001386 803 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 882 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~ 882 (1088)
++-...++-.+..-++..+.+-++.+ +..+.+... .....+-+.- .|.+|+. ....|.+||++..+.+..++ .
T Consensus 417 a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~ 489 (1202)
T KOG0292|consen 417 ALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--V 489 (1202)
T ss_pred eEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--c
Confidence 23233332222222244455555442 222223222 2334455554 5555553 34579999999888877775 3
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
..|.-+.||+|..++|--+. .+|.|.+.+- ..+....... .|.+-+|..+|-+|.+..+..= |-+.+
T Consensus 490 s~vkyvvws~dm~~vAll~K-h~i~i~~kkL------~l~~sihEti----riksgawde~gVfiYtT~nHik--Yal~~ 556 (1202)
T KOG0292|consen 490 SKVKYVVWSNDMSRVALLSK-HTITIADKKL------ELLCSIHETI----RIKSGAWDEDGVFIYTTLNHIK--YALEN 556 (1202)
T ss_pred CceeEEEEcCccchhhhccc-ceEEEEecch------hheecchhee----EeeeceeccCceEEEEehhhhh--hhhcc
Confidence 56889999999998887664 5688887653 1222222211 4778899999988877543321 11111
Q ss_pred ce--eeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCce
Q 001386 963 LT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1008 (1088)
Q Consensus 963 ~~--~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~ 1008 (1088)
|. .++++ ..++.-.+ -.|..++.-..|+.+.+.+++.-+.
T Consensus 557 GD~GIikTL----d~~iyitk--v~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 557 GDSGIIKTL----DKPIYITK--VKGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred CCcceEEec----ccceEEEE--eeCCEEEEEecCCCeEEEeechHHH
Confidence 11 12221 11222222 2477777778888888888776543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=283.16 Aligned_cols=293 Identities=16% Similarity=0.280 Sum_probs=251.4
Q ss_pred CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEc
Q 001386 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 425 (1088)
Q Consensus 346 g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~ 425 (1088)
..-+|++++.|.+|++|...+|.+.++ +....+.|..+...||+++||+++... |++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 345899999999999999999999887 334678999999999999999997665 999999
Q ss_pred cCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEE
Q 001386 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1088)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 505 (1088)
.++..- +..++.+|...|+++.|..||+ .+++||+||+++|||++...+.+.+. |..+|+++.++|+. .-|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998753 5668999999999999999999 89999999999999999977777776 77999999997754 579999
Q ss_pred ecCCeEEEEECCCCCceEEe-cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc------eeEEEecccccc
Q 001386 506 SVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQH 578 (1088)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~ 578 (1088)
..+|.|++||+........+ ......|.++...|||.+++.+.. .+..++|++-++. ++..++.|.
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~--- 215 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN--- 215 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence 99999999999987665544 344558999999999999999864 6669999987653 344556666
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
+-+..+.++||+++|+++|.|.+++||+.++. +....+..+ ...+..++||.||.+|++|+.|+.+++|++..++.+
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 88999999999999999999999999999988 444444444 457899999999999999999999999999999999
Q ss_pred cccccccCcceeeeec
Q 001386 658 DAAGVLSDNLRKLSVN 673 (1088)
Q Consensus 658 ~~~~~~~~~v~~~~~~ 673 (1088)
....+|.....|+++.
T Consensus 294 ~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 294 RQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCcccccEEEEee
Confidence 9999998888777654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=280.13 Aligned_cols=297 Identities=17% Similarity=0.190 Sum_probs=246.7
Q ss_pred ccccccEEEEEEecCC-ceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC
Q 001386 731 KVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 809 (1088)
Q Consensus 731 ~~~~~~i~~~~~s~~g-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1088)
.+|.+.|+.++..+.+ ..+++++.|..+.+|++.... ...|..+.. +. +|...|..++.++|
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd-------------~~~G~~~r~--~~--GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD-------------IKYGVPVRR--LT--GHSHFVSDVVLSSD 74 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc-------------cccCceeee--ee--ccceEecceEEccC
Confidence 4599999999998874 556778889999999987652 334443333 33 49999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-ccCCeeE
Q 001386 810 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTG 887 (1088)
Q Consensus 810 g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~-h~~~V~~ 887 (1088)
|++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++........... |++-|.|
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 99999998 99999999999999999999999999999999 899999999999999999886544443333 3889999
Q ss_pred EEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcce
Q 001386 888 LVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 964 (1088)
Q Consensus 888 l~~s~d--g~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~ 964 (1088)
+.|+|+ ..+++++|.|++|++||+.+ .+....+.+|.. .++.+++||||..+++ +.||.+.+||++.++
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 999998 78999999999999999998 445555666665 8999999999999999 688999999999999
Q ss_pred eeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001386 965 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1044 (1088)
Q Consensus 965 ~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~ 1044 (1088)
++.. .+|...|.+++|+|+.-+|+.+ .+..|+|||+.++..+..+.+...-+ .........++++|++ ||..|+.
T Consensus 226 ~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~tLf~ 300 (315)
T KOG0279|consen 226 NLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQTLFA 300 (315)
T ss_pred eeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCcEEEe
Confidence 9765 3578999999999987666655 56669999999999887776433222 1223345568899999 9999999
Q ss_pred EeCCCcEEEEeCCC
Q 001386 1045 GLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1045 ~~~dg~v~~w~l~~ 1058 (1088)
|..|+.|++|.+..
T Consensus 301 g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 301 GYTDNVIRVWQVAK 314 (315)
T ss_pred eecCCcEEEEEeec
Confidence 99999999999853
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=300.43 Aligned_cols=459 Identities=15% Similarity=0.216 Sum_probs=344.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+..+...|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+..+ .+++|+.|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34488999999999999999999999999999999988777 4556777999999998877 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEee
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 549 (1088)
..+++.++.|..|...|.+++.||.. .+++++|.|-+|++||++.. .+..++.+|.+-|++++|.| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998864 69999999999999999875 46779999999999999999 6678888887
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+.+|.+|.+.+..+..++.+|. ..|+++.+-+- ..++++|++|.+|+|||.++..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 5569999999999999999999 89999999764 47999999999999999999999999998865 6999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
+.|+|.-.++++|+.||+++||+..+-+....+....+
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle------------------------------------------ 270 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE------------------------------------------ 270 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc------------------------------------------
Confidence 99999999999999999999999887665555444333
Q ss_pred ccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcc
Q 001386 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQF 787 (1088)
Q Consensus 708 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1088)
++.+++-.+.+..++.|..+|.+.+ ++
T Consensus 271 ----------------------------RvW~I~~~k~~~~i~vG~Deg~i~v-~l------------------------ 297 (794)
T KOG0276|consen 271 ----------------------------RVWCIAAHKGDGKIAVGFDEGSVTV-KL------------------------ 297 (794)
T ss_pred ----------------------------eEEEEeecCCCCeEEEeccCCcEEE-Ec------------------------
Confidence 3444444444555555555554443 10
Q ss_pred eeeccCCCCCCCCeeEEEEecCCCEEEEEeCC--cEEEE------EcCCceeEE----EecCCCCCeEEEEEcCCCCcEE
Q 001386 788 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGG--VISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHDNNVI 855 (1088)
Q Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg--~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~sp~d~~~l 855 (1088)
......+.+++.|+.+-+.... .+.+- ++..|+++. .+-...-....++-+| +|+++
T Consensus 298 ----------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV 366 (794)
T KOG0276|consen 298 ----------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFV 366 (794)
T ss_pred ----------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEE
Confidence 1111123334444333222110 01111 233333321 1111112235678899 88887
Q ss_pred EEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCe
Q 001386 856 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 935 (1088)
Q Consensus 856 asg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 935 (1088)
+++ .||.-.||..-.. -..+.+.-....|++|....|+--.++.|+++ +..+.. +.... -
T Consensus 367 ~Vc-gdGEyiIyTala~-----RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~-----ksi~~-------~ 426 (794)
T KOG0276|consen 367 VVC-GDGEYIIYTALAL-----RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEH-----KSIRP-------D 426 (794)
T ss_pred EEe-cCccEEEEEeeeh-----hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceec-----ccccc-------c
Confidence 766 5888888863211 11245666788999998888888778889888 432211 11110 1
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 936 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 936 ~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
..+.+--.|.+|.+.+++.+++||..+++.++.+-. ....+.|+.+|.+++.++.|.
T Consensus 427 ~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 427 MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred cceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecCc
Confidence 113333456777778899999999999999988542 356789999999998887664
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=295.34 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=268.0
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
+..+.|.||...|+.+-|+|+-. +.++++.|++|++||..+|+.... ++||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 66788899999999999999987 899999999999999999998765 8999999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+..|++||+++.|-.+++||..+- ......+.+|.-.|.++.|-|.|. ++++++.|.+|+.|++.+|.+++++.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999863 233346779999999999999998 8999999999999999999999999999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCC---------------CEEEEEee
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT 549 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g---------------~~l~~~~~ 549 (1088)
...|..+.+ ..||.++++++.|.+|++|-+.+.++...+..|..+|.+++|.|.. +++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 6789999999999999999999999999999999999999997642 35666654
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
+++|++||+.+|.++.++.+|. ..|..++|+|.|+||+++.+|+++++||+.+++++..+..|.+ .++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 6679999999999999999999 9999999999999999999999999999999999999998766 589999
Q ss_pred EecCCCEEEEEeCCCcEEEEeC
Q 001386 630 FNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
|..+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999964
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=279.75 Aligned_cols=535 Identities=13% Similarity=0.162 Sum_probs=380.1
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
+.-++|+. -=..+-+-|.|..+..++ +.+.+++++...+. .+.||+..|.|++.+|
T Consensus 59 vygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHP 114 (626)
T KOG2106|consen 59 VYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHP 114 (626)
T ss_pred EEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecC
Confidence 34445554 233455677777433333 45667776543222 1778999999999999
Q ss_pred CCCEEEEEeCCC--------EEEEEEccCCCcccceeEeccCCCCEEEEEecCCC--CcEEEEEEeCCCcEEEEeCCCCc
Q 001386 407 DGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 407 dg~~las~~~dg--------~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~--~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
|.-.+|+|-..| .+++||..+-. .+..+......|+|++|++-+ ..+..+--+.+..+.|||+..+.
T Consensus 115 dri~vatGQ~ag~~g~~~~phvriWdsv~L~---TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~ 191 (626)
T KOG2106|consen 115 DRIRVATGQGAGTSGRPLQPHVRIWDSVTLS---TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKA 191 (626)
T ss_pred CceeeccCcccccCCCcCCCeeeecccccce---eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhh
Confidence 999999875444 49999977654 333566677889999999753 32233334556789999999998
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE---ecCC-CCceEEEEEccCCCEEEEEeeCCC
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAP-GLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~-~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
.....+.....|....|+|... .++.....|.+.+|+++.+..... +..+ ...|.|++|.++|..+-. +
T Consensus 192 ~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-----D 264 (626)
T KOG2106|consen 192 KLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-----D 264 (626)
T ss_pred ccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee-----c
Confidence 8877777788889999988753 455555678999999987765432 2222 257999999999987643 4
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
.++.|.||+..+.+..+....|. +.|.+++...+|.. ++|+.|..|..|| ..-+.++..+.......+..++=..
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~ 339 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK 339 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecC---CceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCC
Confidence 47789999998887777776666 99999999998865 5599999999999 5555566555554444566555332
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
.+ |++|+..+.|..=.+.++-.
T Consensus 340 ~d--i~vGTtrN~iL~Gt~~~~f~-------------------------------------------------------- 361 (626)
T KOG2106|consen 340 GD--ILVGTTRNFILQGTLENGFT-------------------------------------------------------- 361 (626)
T ss_pred Cc--EEEeeccceEEEeeecCCce--------------------------------------------------------
Confidence 22 66666655544333322211
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeecc
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDT 792 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1088)
+...+|......++..|+...+++++.|+.+++|+ ..+. .|. ..
T Consensus 362 ---------------~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~---------~wt---------~~- 405 (626)
T KOG2106|consen 362 ---------------LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL---------EWT---------KI- 405 (626)
T ss_pred ---------------EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce---------eEE---------EE-
Confidence 01123666778888999999999999999999997 1111 121 11
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 793 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
...++.|+.|.|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+.|+||-+..
T Consensus 406 ----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 406 ----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred ----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECC
Confidence 45688899999999 888887 89999999999666555544 88999999999 899999999999999999865
Q ss_pred c-eeeeeecc-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee---------ee---eecCCCCccCCCCeEE
Q 001386 872 S-EVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMTLAPSETH 937 (1088)
Q Consensus 872 ~-~~~~~l~~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~---------~~---~~~~~~~~~~~~~v~~ 937 (1088)
. ........ |..+|+.+.||+|+++|.+-+.|-.|-.|.-..-+.... .+ +....+ .....|..
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~--s~~t~i~a 556 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG--SDGTDINA 556 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--cCCchHHH
Confidence 4 33333322 447999999999999999999999999994332111110 00 011111 11134666
Q ss_pred EEEcCCCCEEEEEeC-CeEEEEEcCcc--eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 938 IQFHKDQTRFLLVHE-THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 938 ~~fs~dg~~l~~~~d-~~i~vwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
++-+.+.+.+|++.| |+|++|...-- +.....+.+|++.|++++|+.+...+++.+.|..|..|++
T Consensus 557 ~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 557 VARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 777788889999755 79999986533 2333346789999999999999999998889999999986
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=281.26 Aligned_cols=339 Identities=18% Similarity=0.233 Sum_probs=287.9
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|+++.| +.+|.+|++|+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 6889999999999999777 8999999999999999999999999999999999999 55889999999999999999
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++=.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999998888888999999999999999976 5559999999988899999988 89999999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCC
Q 001386 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1088)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 675 (1088)
+..||+|++||..+++++..+....+ ....++.++.++..++.|+.++.+.+.+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999876553 3468899999999999999999888877665543211110
Q ss_pred CcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc
Q 001386 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1088)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 755 (1088)
.+..+-. +.
T Consensus 274 ---------------------------------------------------------------------~~~~l~~-~~- 282 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKP-SQ- 282 (399)
T ss_pred ---------------------------------------------------------------------CCccccc-cc-
Confidence 0000000 00
Q ss_pred cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEE
Q 001386 756 GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 834 (1088)
Q Consensus 756 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 834 (1088)
......|..+.++..-.+.|+|+ ||+|.|||+.+.+....
T Consensus 283 ---------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~ 323 (399)
T KOG0296|consen 283 ---------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI 323 (399)
T ss_pred ---------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence 00122344445555666788888 99999999998776655
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 835 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 835 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
.. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++++|++++++|+|.|++.+|+++.
T Consensus 324 c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 324 CE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 55 888899999987 4689999999999999999999999999999999999999999999999999999999874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=285.91 Aligned_cols=301 Identities=18% Similarity=0.249 Sum_probs=270.0
Q ss_pred ccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
..+..|-.+.+.+.+|.+.|.|+++.|-.+ ++++|+.|++|+|||+.+|++..+ +.||-.
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~ 194 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIE 194 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhh
Confidence 335556678899999999999999999887 799999999999999999998876 889999
Q ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001386 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~ 477 (1088)
.|..+++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccce
Confidence 99999999999999999999999999999998877 6889999999999999988 899999999999999999999
Q ss_pred eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
+..+.||..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|
T Consensus 270 V~~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----ni 342 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NI 342 (460)
T ss_pred EEEecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cc
Confidence 9999999999999988543 3579999999999999999999999999999999999999999999998753 39
Q ss_pred EEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe---CCC---CCCCCceEEEe
Q 001386 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFN 631 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s 631 (1088)
..|++..|..++.+.+|. ..+++++.+.|+ ++++|+++|.+.+||.++|-..+... ..+ ....|.+.+|.
T Consensus 343 k~w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred eeccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 999999999999999888 899999998874 88999999999999999886655442 111 12357889999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 001386 632 KNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
..|..|++|..|.+|++|.-...
T Consensus 419 ktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccCceEEeccCCcceEEEecccc
Confidence 99999999999999999986643
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=265.09 Aligned_cols=295 Identities=16% Similarity=0.249 Sum_probs=253.0
Q ss_pred eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccc
Q 001386 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 577 (1088)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 577 (1088)
-+|++++.|.+||+|...++.+..++......|..+...|+++.|++++ ...|++||++++. ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 4799999999999999999999999999999999999999999999987 4569999999765 588899998
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
..|.++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+..-|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 46999999999999999999999999999866332
Q ss_pred cccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccE
Q 001386 658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737 (1088)
Q Consensus 658 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i 737 (1088)
..+- |+ ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 2111 11 23568
Q ss_pred EEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001386 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 817 (1088)
Q Consensus 738 ~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1088)
.+++..|||.+++++...|..++|++...... + .+....+.+.|...+....+|||+++||+++
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-------------s---~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-------------S---ELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCcc-------------c---cceEhhheecccceEEEEEECCCCcEEEeec
Confidence 89999999999999999999999998763220 0 1111112235899999999999999999998
Q ss_pred -CCcEEEEEcCCc-eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEEC
Q 001386 818 -GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 891 (1088)
Q Consensus 818 -dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s 891 (1088)
|.+++||+.++. +.-..+.+|...+..++||. |++||++|+.|+.+++|+++.++.+....+|-....|++..
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 899999999987 66677889999999999999 89999999999999999999999999999998888887764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=280.80 Aligned_cols=335 Identities=15% Similarity=0.190 Sum_probs=287.8
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+.++..|+++|.+++.+|+.+ ++|||+.|....||+..+|+.... +.+|...|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 345678899999999999999777 899999999999999999997765 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
||.||.+||+|..+|.|+||+..++.... .+..-...+.-+.|+|-+. +|+.|+.||.+-+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999987655 4445566788999999888 899999999999999999888899999
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
|..++++=.|. ++|+.++++..||+|++|+..+.+....+... +....++.++.++..++.|.. ++.+++.+.
T Consensus 189 h~~~ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 99999999985 46899999999999999999999988876643 446778899999999988865 555888888
Q ss_pred CCCceeEEEec--------cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC
Q 001386 563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
.+|+.+....+ +......|..+.++..-+..++|+-||+|.|||+...++........ .|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-c
Confidence 88888777663 22112334445555566788999999999999999887777765543 489999998 7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecc
Q 001386 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1088)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 714 (1088)
.+|++++.+|.|+.||.++|+......+|...|.+++++ |+++++++++.|++.+|++
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999998 6788899999999999887
Q ss_pred c
Q 001386 715 P 715 (1088)
Q Consensus 715 ~ 715 (1088)
.
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 4
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=273.09 Aligned_cols=523 Identities=14% Similarity=0.187 Sum_probs=375.5
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--------cEEEEeCC
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDAV 473 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--------~i~vwd~~ 473 (1088)
+-+-|.|..+.... ..+.+++++...+ +.+.+|...|.|++.+||.- .+++|-.-| .+++||..
T Consensus 71 ly~lptgE~vyfvA--~V~Vl~n~ee~~Q----r~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWdsv 142 (626)
T KOG2106|consen 71 LYLLPTGELVYFVA--AVGVLYNWEERSQ----RHYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDSV 142 (626)
T ss_pred eEEccCccEEEEec--cEEEEEeehhhhc----ccccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeecccc
Confidence 55677777665542 3456677765321 14679999999999999876 566554433 59999988
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEE--ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+-..++.+......|++++|++...|.++... +.+..+.+||+..+.........+..+....|.|.+..++...
T Consensus 143 ~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~--- 219 (626)
T KOG2106|consen 143 TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC--- 219 (626)
T ss_pred cceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe---
Confidence 88888888888889999999988877776665 3455689999998877777777777888999999766555443
Q ss_pred CCceeEEEEeCCCCceeEE---EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 552 EGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
|.+.++.|+.+.+...++ +..+. +..|.|++|.++|. +++|..+|.|.||+..+.+..+....|. ..|.++
T Consensus 220 -Gk~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L 293 (626)
T KOG2106|consen 220 -GKGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSL 293 (626)
T ss_pred -CCceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEE
Confidence 267799999998876655 44444 46799999999875 7899999999999998877777766554 469999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
+.-.+|.+|- |+.|+.|..||-. -+.++...
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e----------------------------------------------- 324 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE----------------------------------------------- 324 (626)
T ss_pred EEecCccEee-cCccceEEecccc-cccccccc-----------------------------------------------
Confidence 9999997666 9999999999922 22221111
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
+|+ ..+.|+.++-...+ ++.+...+.|..=.++ .+..+.
T Consensus 325 -------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~------------------~~f~~~ 363 (626)
T KOG2106|consen 325 -------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLE------------------NGFTLT 363 (626)
T ss_pred -------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeec------------------CCceEE
Confidence 011 11222222221111 4444443333221111 111111
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
..+|......++..|+...+++++ |+.+++|+ ..+...+.. ...++.|+.|+| .| .+|.|+..|...|.
T Consensus 364 -----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 364 -----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVL 433 (626)
T ss_pred -----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEE
Confidence 124778889999999998888887 99999999 445444443 456889999999 67 99999999999999
Q ss_pred EcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 868 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 868 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
|.++...+..-.. ..+++++.|+|+|.+||.|+.|+.|+||.++.....-.+ +....+ .+|+++.||+|++++
T Consensus 434 d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r-~~k~~g-----s~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR-VGKCSG-----SPITHLDWSSDSQFL 506 (626)
T ss_pred ecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE-eeeecC-----ceeEEeeecCCCceE
Confidence 9999766665554 889999999999999999999999999999876533322 222233 369999999999999
Q ss_pred EE-EeCCeEEEEEcCcceeeee-----------------eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 948 LL-VHETHLAIYEAEELTCLKQ-----------------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 948 ~~-~~d~~i~vwd~~~~~~~~~-----------------~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.+ +.|-.|..|....-+.+.. +...|+..|..++-|.+.+++++|...|+|++|..+--...
T Consensus 507 ~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred EeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 99 7788899994433222211 12235677788888899999999999999999998765544
Q ss_pred EEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1010 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
+.+. .+.. +.....+++|.-. ...|++.+.|.+|..|++
T Consensus 587 A~~h--e~~g-----hs~~vt~V~Fl~~-d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 APSH--EYGG-----HSSHVTNVAFLCK-DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccce--eecc-----ccceeEEEEEeeC-CceEEecCCCceEEEEEe
Confidence 3322 2222 2233467888874 467777779999999987
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=271.72 Aligned_cols=290 Identities=19% Similarity=0.245 Sum_probs=252.6
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|.++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 45789999999999999998 79999999999999975433211 127799999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
+..|++++.|.+|+.||+++|++.+ .+++|...|+.+.-+.-|.. ++.+++.|+++++||+++..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998777 68899999999996666665 78999999999999999999988876 5667
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC---
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--- 564 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--- 564 (1088)
++++.| ...+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+.
T Consensus 177 ltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGF--KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEe--cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 888888 456678999999999999999999999999999999999999999999998875 66799999874
Q ss_pred -CceeEEEecccc-ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 565 -GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 565 -~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.+++..+.++.. .......++|+|++..+-+|+.|..+++||......+..+++|.+ .|++++|+|...++.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEecc
Confidence 345778887751 113456778999999999999999999999999899999987755 6999999999999999999
Q ss_pred CCcEEEE
Q 001386 643 ENRIKIL 649 (1088)
Q Consensus 643 dg~i~iw 649 (1088)
|.+|++=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=263.02 Aligned_cols=292 Identities=22% Similarity=0.336 Sum_probs=239.8
Q ss_pred heeecccCCCCceeeeecCC-CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spd-g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..+++++|++.|+.++|+|- |. +||+++.|..|+||+...+..... ...+-.+|+..|+++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 45788999999999999998 76 899999999999999986432211 11123579999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEe
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~---~~~~~~ 481 (1088)
+|.|++||+++.|.++.||.-..++ +.....+.||...|.+++|+++|. +|++++.|+.|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999887654 455668999999999999999999 8999999999999998754 467889
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC---CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
..|...|..+.|+|..+ +|++++.|.+|++|+-... .+..++.++...|.+++|++.|..|++++. ++++.
T Consensus 147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 99999999999998765 9999999999999987632 357788899999999999999999999975 66799
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe------eeEEEeCCCCCCCCceEEEec
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
||-..+. +.+ .|...+..+.|. ...|++++.|+.|++|.-...- .+... .+.+...|+++.|+|
T Consensus 221 Iw~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 9985522 222 124788989998 5689999999999999766421 11111 122334799999999
Q ss_pred C-CCEEEEEeCCCcEEEEeCC
Q 001386 633 N-GTLLAVIANENRIKILETP 652 (1088)
Q Consensus 633 ~-~~~l~~~~~dg~i~iwd~~ 652 (1088)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=293.37 Aligned_cols=499 Identities=17% Similarity=0.198 Sum_probs=354.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+...+..|..++|+|..-+++++-..|.|++||..-+.++. .+..|.++|..++|+|++. +++||+.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34466789999999999999999999999999999988776 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
..+.+|+.++.||-..|..+.|++.- .+++++|.|.+|+||++.+++++..+.+|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999997643 69999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE---EEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
+.+|++||+..-+....-.+ ++.=...+... +.|+.|- -....+.+| ...|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCC---------CchhhhhccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence 55699999875433222111 00000111111 1122222 222345555 4469999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCC--cccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccccc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 706 (1088)
+|+|.-.++++|++|+.|++|.+...+ .+.+.++|.+.|.++-|+ |....+++.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE 270 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE 270 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence 999999999999999999999998764 466789999999999998 56788999999
Q ss_pred CccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCc
Q 001386 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ 786 (1088)
Q Consensus 707 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1088)
|+++++||+......++... ...+...++..|..+ +++++.|+-+.+|.++...
T Consensus 271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lN-LfAAgHDsGm~VFkleREr------------------- 324 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELN-LFAAGHDSGMIVFKLERER------------------- 324 (1202)
T ss_pred CccEEEEecccccceeeeec------cCCeEEEEEecCCcc-eeeeecCCceEEEEEcccC-------------------
Confidence 99999999987665554432 456788999999998 4555566666677654322
Q ss_pred ceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeE--EEecCC---CCCeEEEEEcCCCCcEEEEEeCC
Q 001386 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--LTIMPP---SPTATSLAFNPHDNNVIAIGMDD 861 (1088)
Q Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~lasg~~d 861 (1088)
+ +.++ ++..|....+..|+-+|+.+.+.. ..++.. ..+..++.++|..+..+++...|
T Consensus 325 -------------p--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~ 387 (1202)
T KOG0292|consen 325 -------------P--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLD 387 (1202)
T ss_pred -------------c--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccC
Confidence 1 2333 344555556889999999875433 334433 36788999999555555554433
Q ss_pred -CeEEEEEcCCceee-eeec-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEE
Q 001386 862 -STILIYNARSSEVI-SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 938 (1088)
Q Consensus 862 -g~i~lwd~~~~~~~-~~l~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 938 (1088)
|...++.+...... ...+ .-.++-....|-...++.+---.+..+.+-++.+.. .+.++.+. .+..+
T Consensus 388 n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~v---tkkl~~~~-------~~~~I 457 (1202)
T KOG0292|consen 388 NGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKV---TKKLLLPE-------STDDI 457 (1202)
T ss_pred CCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchh---hhcccCcc-------cccce
Confidence 45556655432110 0000 011111112222222333333335556666665532 12222221 24456
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 939 QFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 939 ~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
.+...|.+|+. +...|.+||++.++.+.++. ...|..++||+|..+++.-+ ..+|.+.+
T Consensus 458 F~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 458 FYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLS-KHTITIAD 516 (1202)
T ss_pred eeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence 66667766655 45679999999998888765 56889999999988776554 33455554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=273.18 Aligned_cols=550 Identities=12% Similarity=0.117 Sum_probs=391.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccC-CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
...|.++|||.+++.||.+-.+|.|.+|++..+=.... .+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 47899999999999999999999999999998644333 45555 45799999997665 89999999999999999
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE--EecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
++.+..+....+.|++++.++.. ..++.|+.||.+..++........ .+....+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997654 589999999988888777666544 34445678999999999999999976
Q ss_pred CceeEEEEeCCCCceeEEEeccc-----cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
++.|++||..++..+....... ....-|.++.|-.+ ..+++|...|+|.+||...|.+++.+..+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 6679999999998777332111 11235777777755 5789999999999999999999999887754 6999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
++..+++.++++++.|+.|.-+...++..-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988877654220
Q ss_pred ccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcc
Q 001386 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQF 787 (1088)
Q Consensus 708 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1088)
|- ...+...|...+.+++..++ .+++++.|..+.+-.....+. .+- .
T Consensus 281 -----wv-----------~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~----------~~h-----~ 327 (691)
T KOG2048|consen 281 -----WV-----------INSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN----------MDH-----R 327 (691)
T ss_pred -----ee-----------eeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc----------hhh-----h
Confidence 10 00111237778888888877 788888898887643322110 000 0
Q ss_pred eeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCcee---------EEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001386 788 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIG 858 (1088)
Q Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~lasg 858 (1088)
+.... .. -.-+...|..++++......+.+|.+.+... .+-.......|.+.+.|| +|++++.+
T Consensus 328 ~~~~~----p~--~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~s 400 (691)
T KOG2048|consen 328 QKNLF----PA--SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIS 400 (691)
T ss_pred ccccc----cc--cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEe
Confidence 00000 01 1124455666666666788889998866521 122233456799999999 89999987
Q ss_pred eCCCeEEEEEcCCceee-----eeeccccCCeeEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 859 MDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 859 ~~dg~i~lwd~~~~~~~-----~~l~~h~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
.- ..++||.+..-..+ .....-.-....+.|+-|+..++.++ .+..+.+.+++++.......++.. +..
T Consensus 401 t~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~--- 475 (691)
T KOG2048|consen 401 TV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKC--- 475 (691)
T ss_pred ec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCC---
Confidence 63 45888887652221 12222334577889999999988888 778888888887654433333322 111
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEee-CCCEEEEEeCCCcEEEEEcCCCceEE
Q 001386 933 PSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~s~dg~v~vwd~~~~~~~~ 1010 (1088)
..|..++.||||++||+ +..+.|.+|++++++.-.... .-...|+.++|+| +-..|+.+..++.|.-||+....+ .
T Consensus 476 ~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l-~ 553 (691)
T KOG2048|consen 476 PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL-T 553 (691)
T ss_pred CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhh-h
Confidence 36999999999999999 788999999999887654432 2248899999995 556788899999999999955442 2
Q ss_pred Eeccc--cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1011 RILST--AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1011 ~~~~~--~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
++... ..++..+....-....+.|+|.+.. .+...+.+-+++.|+.
T Consensus 554 ~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s-~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 554 RWSKNNTRNLPKEPKTLIPGIPGISFDPKNSS-RFIVYDAHWSCLIDFS 601 (691)
T ss_pred hhhhccccccccChhhcCCCCceEEeCCCCcc-EEEEEcCcEEEEEecC
Confidence 22211 1222221122122355778874444 3334455666666663
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=284.93 Aligned_cols=279 Identities=20% Similarity=0.310 Sum_probs=252.1
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|++++|+.+|. +||+|+.||.++||+... .++.+ +..|.++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-~l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-NLIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCc-hhhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 4899999999999 899999999999999754 44433 66799999999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
+.|+++.+||..+|.... .+.-|+.+-..+.|-.+.. +++++.|+.|+|+-+...+++.++.+|.++|.++.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999997655 4667888778899988776 8999999999999999999999999999999999994
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCC---------EEEEEeeCCCCceeEEEEeCCCC
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR---------RLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
+.|.+|++++.|+++++|..........+..|...|+.+.|+|.|. .+++++. +.+|++||+..+
T Consensus 369 --~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 --PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred --CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 4678999999999999999998888999999999999999999763 5777765 667999999999
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
.++..+..|. .+|.+++|+|+|.++++|+.||.|.+|+..+++.++.....+. |..++|+.+|..|..+..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEEEcCCCCEEEEEecCCC
Confidence 9999999998 9999999999999999999999999999999999999876544 899999999999999999999
Q ss_pred EEEEeCC
Q 001386 646 IKILETP 652 (1088)
Q Consensus 646 i~iwd~~ 652 (1088)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=257.81 Aligned_cols=293 Identities=15% Similarity=0.203 Sum_probs=253.5
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
..+|...+++|..|.+.|.++.|+-||+ +..+++.|.+|++|+...|.++++ ..+|...|
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EV 62 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEV 62 (307)
T ss_pred ccCcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCcee
Confidence 3467777889999999999999999999 577778899999999999999987 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC--Cce
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSR 477 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~--~~~ 477 (1088)
..++.+.|...+|+|+.|..+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ -++
T Consensus 63 lD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 63 LDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred eeccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCc
Confidence 999999999999999999999999999998777 7899999999999999999 999999999999999875 467
Q ss_pred eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
++.+......|.++.+ .+..|++|+.||+++.||++.++.... .-+.+|++++|++|++..++++. +..+
T Consensus 138 iQildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stl 207 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTL 207 (307)
T ss_pred cchhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----ccee
Confidence 8888888899999977 446899999999999999998765543 34568999999999999998876 5569
Q ss_pred EEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
++.|-.+|++++.+.||......+ .++++.....+++|++||.|++||+.....+..+..+.. ..+.+++++|.-..+
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDF 285 (307)
T ss_pred eecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccce
Confidence 999999999999999998333333 446777778999999999999999999999999887655 347899999977777
Q ss_pred EEEeCCCcEEEEe
Q 001386 638 AVIANENRIKILE 650 (1088)
Q Consensus 638 ~~~~~dg~i~iwd 650 (1088)
+++... .+..|.
T Consensus 286 ~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 286 ITATGH-GDLFWY 297 (307)
T ss_pred eEecCC-ceecee
Confidence 777654 445553
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=266.20 Aligned_cols=287 Identities=18% Similarity=0.301 Sum_probs=249.7
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|+.+.|.+|+. .+++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 488999999999999999999999999999999987543 34447889999999999999999 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|+++|++++.+++|..-|+++... ..+-.++.+++.||++++||++.......+.. ...++++.|..++..+.+++-+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence 999999999999999999999843 23446788899999999999998777665533 3478899999999999999874
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC----CeeeEEEeCCCCCC--C
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLP--E 624 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~--~ 624 (1088)
++ |.+||++......++.||. +.|+.+..+++|.++++-+.|.++++||++. .+++..+.++.+.. .
T Consensus 196 n~----ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 196 ND----IKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred Cc----eeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 44 9999999999999999999 9999999999999999999999999999875 34467776654432 2
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccc
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 704 (1088)
...++|+|+++.+..|+.|+.+++||......+..+.+|...|.++.|+| ....+.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~ 326 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSC 326 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEe
Confidence 45789999999999999999999999999999999999999999999985 45566777
Q ss_pred ccCcccee
Q 001386 705 EAENKSEV 712 (1088)
Q Consensus 705 ~~d~~i~v 712 (1088)
+.|++|.+
T Consensus 327 ~sdk~i~l 334 (338)
T KOG0265|consen 327 SSDKTIYL 334 (338)
T ss_pred ccCceeEe
Confidence 77777654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=311.45 Aligned_cols=294 Identities=21% Similarity=0.350 Sum_probs=256.3
Q ss_pred eeecccC-CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCc--ceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 327 ~~~l~~h-~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
.+++.+| ...|.++.|||||+ ++++++.|+.+++|+..+++ .+.. +.+|...|.+++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666555 77999999999999 59999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEc-cCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4444444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEecCCCC--ceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
+|...|++++| ++++.+|++++.||.|++||+.++. ....+..+.. .++++.|+|++.++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 5678899999999999999999988 3455554444 5999999999999999986 55699
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..|. ...+..+.++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999998322245555667899999999999999999999999999998875 45688999999999999
Q ss_pred EEe--CCCcEEEEeCC
Q 001386 639 VIA--NENRIKILETP 652 (1088)
Q Consensus 639 ~~~--~dg~i~iwd~~ 652 (1088)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=274.11 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=263.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+ .++||...|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999999865 7899999999999999999 899999999999999
Q ss_pred CCC-CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
.++ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|++.++.++.++.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888999999999999997764 69999999999999999999999999999999999999999999999975
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC---------------CCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
+.++++|-..++++...++.|. .+|.+++|.|. ++++.+++.|++|++||+.+|.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6679999999999999999988 89999998763 25889999999999999999999999
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 695 (1088)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 998765 69999999999999999999999999999999999999999999999887
Q ss_pred CCCCcccccccCccceecc
Q 001386 696 EDVKPEISVEAENKSEVEK 714 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~ 714 (1088)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3455889999999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=268.74 Aligned_cols=501 Identities=15% Similarity=0.182 Sum_probs=358.3
Q ss_pred CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeccC-CccEEEEeeeeeCCceEEEEEecCCeEEEEECCC
Q 001386 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1088)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1088)
...|.++||+.+++ .||.+-.||.|.+|++..+-.. ..+.++ ...|.+++|. ++..|++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEeccc
Confidence 45799999999999 6899999999999999986544 455555 4679999996 445899999999999999999
Q ss_pred CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC
Q 001386 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 519 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
.+....+...++.|++++.+|.+..++.++. ++.++.++...++......-.. +.+.+.++.|+|++..+++|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEeccc
Confidence 9999999999999999999999999999875 4468888877776654433222 2478999999999999999999
Q ss_pred CCcEEEEEcCCCeeeEEEeC-----CC-CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeee
Q 001386 599 DHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1088)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1088)
||.|++||..++..+..... .. ...-|+++.|-.++ .+++|...|+|.+||...+..++....
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~---------- 243 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC---------- 243 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh----------
Confidence 99999999999988773321 11 11235566666554 788999999999999998877665554
Q ss_pred cCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEe
Q 001386 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 752 (1088)
Q Consensus 673 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 752 (1088)
|...|.+++..+++.+++++
T Consensus 244 ------------------------------------------------------------h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 244 ------------------------------------------------------------HDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ------------------------------------------------------------hhcceeEEEEcCCCCeEEEc
Confidence 45566777777777778888
Q ss_pred ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCcee
Q 001386 753 ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 831 (1088)
Q Consensus 753 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~ 831 (1088)
+.|+.+..|...++... |-.. .....|...|.+++..++ .+++|+ |.++.+-.....+.
T Consensus 264 Gvd~~ii~~~~~~~~~~---------wv~~---------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~ 323 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSE---------WVIN---------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN 323 (691)
T ss_pred cCCCceEEEEecCCccc---------eeee---------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc
Confidence 88888777765544320 2111 122248889999999888 666665 77777665543222
Q ss_pred EEEecCCCCCeEE-EEEcCCCCcEEEEEeCCCeEEEEEcCCce---------eeeeeccccCCeeEEEECCCCCEEEEEe
Q 001386 832 ILTIMPPSPTATS-LAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 832 ~~~~~~~~~~i~~-l~~sp~d~~~lasg~~dg~i~lwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~las~s 901 (1088)
..........-.+ +...| .++|..--.+..+.+|.+.+.. +++........|.+.+.||||++++.+.
T Consensus 324 ~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st 401 (691)
T KOG2048|consen 324 MDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST 401 (691)
T ss_pred hhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee
Confidence 1111100011111 23333 4566666667788999887651 1222222334599999999999999776
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-E-eCCeEEEEEcCccee--eeeee-cCCCcC
Q 001386 902 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTC--LKQWF-PISSVP 976 (1088)
Q Consensus 902 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~-~d~~i~vwd~~~~~~--~~~~~-~~h~~~ 976 (1088)
- ..++||.++.........+.... ........+.|+-|++.++. + ....+.+++..+... +.... .+--..
T Consensus 402 ~-~~~~iy~L~~~~~vk~~~v~~~~---~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~ 477 (691)
T KOG2048|consen 402 V-SRTKIYRLQPDPNVKVINVDDVP---LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPS 477 (691)
T ss_pred c-cceEEEEeccCcceeEEEeccch---hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCc
Confidence 4 34789988764322222222221 11225788999999988887 4 456788887765432 22211 123578
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 977 ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 977 v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
|..++.|+||.|+|+.+.+|.|.+|++.+++..+...... ...++++|+|.+.+.|+++..|++|+-+|+
T Consensus 478 I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln----------~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN----------IDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred ceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC----------cceeeeeccccccCcEEEEecCCeEEEEec
Confidence 9999999999999999999999999999998765442111 345678899778889999999999999999
Q ss_pred CC
Q 001386 1057 NE 1058 (1088)
Q Consensus 1057 ~~ 1058 (1088)
..
T Consensus 548 ~~ 549 (691)
T KOG2048|consen 548 EA 549 (691)
T ss_pred ch
Confidence 33
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=282.89 Aligned_cols=284 Identities=21% Similarity=0.301 Sum_probs=248.3
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+-.- ..++..|..+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnF-------------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNF-------------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceeeH-------------------HHHhhhhcccceeEEEccCCCEEE
Confidence 3458999999999996 78999999999999743221 123677999999999999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
+|+.+|.|++|+..-.. ++ .+.+ |...|++++|+|... .+++++.||+|+|||....+.-..+.+|.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987543 22 3444 448999999999888 79999999999999999998888999999999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
.|+|.. .++++|+.|..|++||.+++.++.++..|...|..+.|++++++|++++. +..++++|+++.+.+..+
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999876 48999999999999999999999999999999999999999999999986 556999999999999999
Q ss_pred eccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 572 QGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
++|. ..+.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.
T Consensus 303 r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 303 RGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeec
Confidence 9998 899999999965 4566689999999999986666666543 3345799999999999999999999999997
Q ss_pred CC
Q 001386 651 TP 652 (1088)
Q Consensus 651 ~~ 652 (1088)
-.
T Consensus 379 r~ 380 (464)
T KOG0284|consen 379 RN 380 (464)
T ss_pred cC
Confidence 55
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=267.41 Aligned_cols=295 Identities=14% Similarity=0.230 Sum_probs=259.4
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||-..|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 378899999999999999999999999999999999997544 7889999999999999888 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998865 48999999999999999999999999999999999999998889999876
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
+.+|++||+..|+...++..|. ..+.+++.+|....+++++.| .|+-|++..|..+..+..+.. .+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeee
Confidence 6669999999999999999888 899999999999888888876 489999999999998876644 5889998
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
+.|+ ++++|++.|.+.+||..++..++....... -|+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq-------------------------------------pGS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ-------------------------------------PGS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCccccccccccc-------------------------------------CCc-----
Confidence 8877 788999999999999998866554321000 000
Q ss_pred eeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 711 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
......|.+.+|...|.+|+++..|.+|++|.-+.
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 01345788999999999999999999999997543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=288.72 Aligned_cols=296 Identities=16% Similarity=0.248 Sum_probs=253.4
Q ss_pred CCchhheeecccCCCCceeeeecC-CCCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCCC
Q 001386 321 DFPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1088)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~sp-dg~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 398 (1088)
-+|...++++.||+..|+++.|.| .+. ||++|+.|+.|+||++-. ++++++ +.||..+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~ 260 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKP 260 (503)
T ss_pred eccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhh
Confidence 358899999999999999999999 665 999999999999999977 777776 7889999
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
|.+++|+++|..+.+++.|+.|++||+++|+++..+ . ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.+
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF---H-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEE---e-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHH
Confidence 999999999999999999999999999999876633 1 2347899999999965 7888999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
+.+..|-+.|..+.|. ++|..+++.+.|+.+++|+.+..-... ........+.++..+|++.++++-+. ++.|
T Consensus 336 qeYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i 409 (503)
T KOG0282|consen 336 QEYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYI 409 (503)
T ss_pred HHHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceE
Confidence 9999999999999994 577899999999999999998766544 33344557788999999999998764 5668
Q ss_pred EEEeCCCC---ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-C
Q 001386 558 VEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-N 633 (1088)
Q Consensus 558 ~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 633 (1088)
.++..... ...+.+.||... +.-..+.|+|||.+|++|+.||.+.+||..+-+++..+..|.. .+..+.|+| .
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e 486 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVE 486 (503)
T ss_pred EEEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCC
Confidence 88876532 344567777632 3456689999999999999999999999999999999998744 688999999 4
Q ss_pred CCEEEEEeCCCcEEEEe
Q 001386 634 GTLLAVIANENRIKILE 650 (1088)
Q Consensus 634 ~~~l~~~~~dg~i~iwd 650 (1088)
...+|+++.+|.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 57899999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=275.23 Aligned_cols=293 Identities=16% Similarity=0.178 Sum_probs=251.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
++..|...|.-+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||.+ ++++++.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4788999999999999999999999999999999988777777789999999999999999999 89999999999999
Q ss_pred eCCCCceeEEec-cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 471 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
|+.+|.+.+.+. ++...+.+++|. +||..+++|+.|+.+..||++......--......|.+++.++||+++++.+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 999999987774 356788999995 57789999999999999998754422211222346899999999999999876
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
+..|++++..+......+..+ .+|++++.+.+++++++.-.+..+++||++..+.+..+.++.....+..-+
T Consensus 375 ----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 375 ----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 445999998877666555544 489999999999999999999999999999888888888776544555556
Q ss_pred Eec-CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 630 FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 630 ~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
|.- +..++++|+.|+.|+||+..+++.+..+.+|...|.+++++|. +..++++++.||
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~---------------------~p~m~ASasDDg 505 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA---------------------DPEMFASASDDG 505 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC---------------------CHHHhhccCCCC
Confidence 654 5689999999999999999999999999999999999999974 566799999999
Q ss_pred cceecccc
Q 001386 709 KSEVEKPL 716 (1088)
Q Consensus 709 ~i~vw~~~ 716 (1088)
+||+|...
T Consensus 506 tIRIWg~~ 513 (519)
T KOG0293|consen 506 TIRIWGPS 513 (519)
T ss_pred eEEEecCC
Confidence 99999865
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=246.35 Aligned_cols=293 Identities=16% Similarity=0.236 Sum_probs=238.1
Q ss_pred ccccccEEEEEEecC-CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC
Q 001386 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 809 (1088)
Q Consensus 731 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1088)
.+|.+++..++++|. |..|++++.|..|++|+...+.. .........+|...|++++++|.
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s------------------~~ck~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS------------------WTCKTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc------------------EEEEEeccccchheeeeeeecCC
Confidence 348889999999999 88899999999999998653111 11121222369999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcC--CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeeccccC
Q 001386 810 DAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSK 883 (1088)
Q Consensus 810 g~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~---~~~~~l~~h~~ 883 (1088)
|++||+++ |.++.||.-. +.+++.++.+|..+|.|++|++ +|.+||+++.|++|.||.+..+ ++...|+.|+.
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 99999999 9999999865 4578899999999999999999 8999999999999999999754 67889999999
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 962 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~ 962 (1088)
.|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||...+
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 9999999999999999999999999998731 23678888888876 7999999999999998 5778999998552
Q ss_pred ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEE
Q 001386 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1042 (1088)
Q Consensus 963 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l 1042 (1088)
.+..-|...+..++|. ...|++++.|+.|+++.-..+..-..+.... .....|+ +-..++.|.|...++|
T Consensus 227 -----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~-~~~~aHe--~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 227 -----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLA-KKEGAHE--VDVNSVQWNPKVSNRL 296 (312)
T ss_pred -----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHH-hhhcccc--cccceEEEcCCCCCce
Confidence 2344578899999998 4579999999999999877543222222111 1122223 3456799999557899
Q ss_pred EEEeCCCcEEEEeCC
Q 001386 1043 AVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1043 ~~~~~dg~v~~w~l~ 1057 (1088)
++|++||.|++|.+.
T Consensus 297 ~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 297 ASGGDDGIVNFWELE 311 (312)
T ss_pred eecCCCceEEEEEec
Confidence 999999999999985
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=295.11 Aligned_cols=247 Identities=18% Similarity=0.329 Sum_probs=227.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------c--------------------cceeEeccCCCCEEE
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------A--------------------RQQLEIDAHVGNVND 446 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~--------~--------------------~~~~~~~~h~~~v~~ 446 (1088)
-...++|..|++|++.||.|..|..|++|.+...+. + ....++.||+++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 446799999999999999999999999999984221 0 113458899999999
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec
Q 001386 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1088)
Q Consensus 447 ~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1088)
+.|+|+.+ +|+++|.|+++|+|.+.+..++..++||..+|+.+.|+ |.|.+++|++.|++.++|..+.......+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999995 578999999999999999999999999999
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1088)
+|...|.|+.|+|+..++++|+. +.++++||+.+|..++.|.||. ++|.+++|+|+|.+|++|+.||.|.+||
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCC---CceEEEEEcCCCceEeecccCCcEEEEE
Confidence 99999999999999999999976 6679999999999999999988 9999999999999999999999999999
Q ss_pred cCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+.+++++..+..| ...|.++.|+.||..||+|+.|.+|++||+...
T Consensus 606 l~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999988 446999999999999999999999999998754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=282.73 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.7
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+++.+|.+.|++++|+|+++ ++++++.||.|.+|++.+++.... +..|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 688999999999999998875543 5678899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
+++|++++.+|.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875544 5778999999999999977 7888888999999999999999999999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
+.++++++. +.++++++.||.|++||++..+....+..+...+.+++|+|+++.+++++. ++.+.+||..+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999654 568888888999999999988888888888889999999999999998875 55699999999988
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
+..+..+. ..+.++.|+|++.++++++.+|.|++|++.+++....+..+. ..+.+++|+|+++++++++.||.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887776 799999999998888888889999999999999888887553 3689999999999999999999999
Q ss_pred EEe
Q 001386 648 ILE 650 (1088)
Q Consensus 648 iwd 650 (1088)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=266.90 Aligned_cols=273 Identities=22% Similarity=0.324 Sum_probs=233.9
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
..+.|.|+++.. + .+++|..|.+|+|||.++-++++. +.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD-~--kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDD-E--KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecc-h--hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence 456899999953 3 479999999999999999888865 89999999999994 67999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---eEEeccCCccEE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY 489 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~---~~~~~~~~~~v~ 489 (1088)
+|+.|.+|+|||+++|++++ ++-+|...|..+.|+.. ++++++.|.++.+||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 67799999999999853 799999999999999987653 367789999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
.+.| +.+++++++.|++|++|++.+.+.+.++.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4579999999999999999999999999999999977664 6788888865 6679999999999999
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee---------EEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL---------TTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
.++||. .-|.++.|. .+.+++|+.||+|++||+..+..- ..+..+ ...|..+.|. ...+++.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h--sgRVFrLQFD--~fqIvss 465 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH--SGRVFRLQFD--EFQIISS 465 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc--cceeEEEeec--ceEEEec
Confidence 999999 899999995 578999999999999999875432 222222 3356677764 5678999
Q ss_pred eCCCcEEEEeCCCCC
Q 001386 641 ANENRIKILETPESN 655 (1088)
Q Consensus 641 ~~dg~i~iwd~~~~~ 655 (1088)
+.|.+|.|||...+.
T Consensus 466 sHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 466 SHDDTILIWDFLNGP 480 (499)
T ss_pred cCCCeEEEEEcCCCC
Confidence 999999999998763
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=270.34 Aligned_cols=278 Identities=17% Similarity=0.223 Sum_probs=242.0
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.|..+.|.|+|+.|++|+..|.+.+|+...-..
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF----------------------------------------------- 130 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF----------------------------------------------- 130 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------------------------------------
Confidence 588999999999999999999999998641100
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
.+-...|...|+++.|+.+|..++++..+|.|++|+...+-. +
T Consensus 131 -----------------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV--------k------ 173 (464)
T KOG0284|consen 131 -----------------------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV--------K------ 173 (464)
T ss_pred -----------------------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh--------H------
Confidence 001123888999999999999999999999999998654321 0
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 862 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 862 (1088)
.....|...|++++|||+...+++++ ||+|+|||....+.-..+.+|.-.|++++|+| ...+||+|+.|.
T Consensus 174 --------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDn 244 (464)
T KOG0284|consen 174 --------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDN 244 (464)
T ss_pred --------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCc
Confidence 01113668999999999999999998 89999999999998889999999999999999 778999999999
Q ss_pred eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 863 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 863 ~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
.|++||.++|.++.++.+|...|..+.|++++++|+|+|.|..++++|+.+ ..-+....+|.. .++++.|+|
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~~~WhP 316 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTSLTWHP 316 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hheeecccc
Confidence 999999999999999999999999999999999999999999999999985 335666677766 799999999
Q ss_pred CCCEEEE--EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 943 DQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 943 dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
-..-|++ |.||.|..|.+...+.+..+..+|...|.+++|.|=|..|++|+.|.++++|.
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 7766655 68999999999988888888889999999999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=291.43 Aligned_cols=291 Identities=21% Similarity=0.313 Sum_probs=254.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC-
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 472 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~- 472 (1088)
.|...|.++.|++||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3588999999999999999999999999999977762 22335689999999999999999 8999999999999999
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
..+.+++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|++++++|++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999965 5589999999999999999999999999999999999999999999999864
Q ss_pred CceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCC-CCCceEE
Q 001386 553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 629 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 629 (1088)
++.|++||..++. +...+.++.... .++++.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 6679999999999 567888877333 6999999999999999999999999999999999998877653 1334555
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCcccccccc-cCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccc--c
Q 001386 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 706 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 706 (1088)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++| ...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~----------------------~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP----------------------TENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC----------------------CcCeeeecCcCC
Confidence 6789999999999999999999999999999999 77777777774 455666666 6
Q ss_pred Cccceecccc
Q 001386 707 ENKSEVEKPL 716 (1088)
Q Consensus 707 d~~i~vw~~~ 716 (1088)
|+.+++|...
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 7889999754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=264.24 Aligned_cols=632 Identities=16% Similarity=0.170 Sum_probs=352.3
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..+-.|.+|.+.|+.+.|||-...|||+++.|..|+||.+..|-... .......+.+..-.|.|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeec
Confidence 34567889999999999999777799999999999999998553211 01122335566678899999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC-CceeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-~~~~~~~~~ 483 (1088)
+|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ ++++++.|+.|+|||.+. ++.++..++
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9966666666688999999999987554 7889999999999999999 899999999999999874 678888888
Q ss_pred CCccE-EEEeeeeeCCceEEEEEecC----CeEEEEECCCCCc-eEEecC-CCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 484 ~~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
|.+.- ..+.| .++-..|++.+.+ ..|++||.+.-.. ..++.. ....|.---|.||.++|+.++ .|+..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence 87642 22333 4444566666654 4599999876443 222222 222455567899999998876 56777
Q ss_pred EEEEeCCCCceeE--EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE-EEe--
Q 001386 557 LVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN-- 631 (1088)
Q Consensus 557 i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s-- 631 (1088)
++.+.+...+..- .++... .......++-|....-+..++ ..+++.+.+...+-.. .+ .+. .+. .|+
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~-y~--VPR-ksyrdFH~D 358 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIP-YI--VPR-KSYRDFHSD 358 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecc-cc--cch-hhhhhhhhh
Confidence 8888876554321 111100 011233334443222222211 1223333222111110 00 000 000 111
Q ss_pred --cCCCEEEEEeCCCcEEEEeCCCCCccccc------ccc------------------cCcceeeeecCC--Ccceeccc
Q 001386 632 --KNGTLLAVIANENRIKILETPESNSVDAA------GVL------------------SDNLRKLSVNPI--STVTGAGI 683 (1088)
Q Consensus 632 --~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~------------------~~~v~~~~~~p~--~~~~~~~~ 683 (1088)
|+..-...++.-| -|-..+++.++.. +.| ...+......|. ......+.
T Consensus 359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~ 435 (1012)
T KOG1445|consen 359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSN 435 (1012)
T ss_pred hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccccccccc
Confidence 1110000000000 0111111111000 000 000111111110 00000000
Q ss_pred cCC------ce---------eecCCCCCCC------CcccccccCc--------cceeccccc---c----CCC---cce
Q 001386 684 ANG------SV---------SVNEDPKEDV------KPEISVEAEN--------KSEVEKPLF---A----RPS---ECQ 724 (1088)
Q Consensus 684 ~~~------~~---------~~~~~~~~~~------~~l~~~~~d~--------~i~vw~~~~---~----~~~---~~~ 724 (1088)
+.- .+ .......+.| ..-.+-+... .+.+-.... . .+. ..+
T Consensus 436 ~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~ 515 (1012)
T KOG1445|consen 436 NVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAF 515 (1012)
T ss_pred CCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccc
Confidence 000 00 0000001111 0000000000 000000000 0 000 000
Q ss_pred eeecCC-----------------------------------------ccccc-cEEE------------EEEecCCceEE
Q 001386 725 SLLLPS-----------------------------------------KVKAN-KISR------------LTYNNGGQAIF 750 (1088)
Q Consensus 725 ~~~~~~-----------------------------------------~~~~~-~i~~------------~~~s~~g~~l~ 750 (1088)
.-..|. .+|.. .|.. =-|..+..+++
T Consensus 516 ~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvA 595 (1012)
T KOG1445|consen 516 GKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVA 595 (1012)
T ss_pred cccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEE
Confidence 000000 00000 0000 00111122222
Q ss_pred --EeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-CCCEEEEEe-CCcEEEEEc
Q 001386 751 --ALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSAS-GGVISLYIV 826 (1088)
Q Consensus 751 --~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~-dg~i~iwd~ 826 (1088)
..+..|.|.||++..... +..|. ++..-....|+.+.|.| |.+.||++. ||.|++|.+
T Consensus 596 VPL~g~gG~iai~el~~PGr------------LPDgv------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 596 VPLAGSGGVIAIYELNEPGR------------LPDGV------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred EEecCCCceEEEEEcCCCCC------------CCccc------ccccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 234456777777654332 11111 12222566789999999 777888886 899999998
Q ss_pred CCce-------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEE
Q 001386 827 MTFK-------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 899 (1088)
Q Consensus 827 ~~~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las 899 (1088)
..+. .-..+..|...|+++.|+|-....|++++.|-+|++||+.+++....|.+|++.|.+++|||||+.+|+
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence 7543 345677899999999999987889999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEE
Q 001386 900 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 979 (1088)
Q Consensus 900 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 979 (1088)
.+.||+|++|+-.+++.. +. ++.-. . ..+-..
T Consensus 738 VcKDg~~rVy~Prs~e~p----v~--Eg~gp---------------------------------------v---gtRgAR 769 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQP----VY--EGKGP---------------------------------------V---GTRGAR 769 (1012)
T ss_pred eecCceEEEeCCCCCCCc----cc--cCCCC---------------------------------------c---cCccee
Confidence 999999999998875411 11 11110 0 122234
Q ss_pred EEEeeCCCEEEEEeCC----CcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 980 ATFSCDCRMVFTSFVD----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 980 l~fs~dg~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
+.|..||+++++.+-| ..|.+||..+..+..-.....-..+ .++.=.++++.+.+|++|-.|..|++|+
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-------ccccccccCCCceEEEecCCCceEEEEE
Confidence 5666678777766655 4577887766553211110000000 0111235666677899999999999999
Q ss_pred CCCCCCCc
Q 001386 1056 PNEPGDTW 1063 (1088)
Q Consensus 1056 l~~~~~~~ 1063 (1088)
+....+-.
T Consensus 843 v~~esPy~ 850 (1012)
T KOG1445|consen 843 VIYESPYL 850 (1012)
T ss_pred ecCCCcee
Confidence 98777544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=236.92 Aligned_cols=272 Identities=20% Similarity=0.304 Sum_probs=238.6
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
.++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3477899999999999999999999999999999999998777 7889999999999999998 6999999999999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
||+.+|+.++.+.+|.+.|+.+.| +.+...+++|+.|..+++||-++.. ++..+......|.++..+ +..+++|
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEe--cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999999999999999 5566799999999999999998754 455666666678777654 5667777
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+. +++++.||++.|+....+-+ .+|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....-..
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 65 56699999999998777776 4599999999999999999999999999999999999998877655567
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCc-ceeeeecCCCcce
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVT 679 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~ 679 (1088)
.+++.....+++|+.||.+.+||+.....+..+..+... +..++++|.....
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 788888889999999999999999999888888877776 7888888754433
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=270.04 Aligned_cols=291 Identities=15% Similarity=0.194 Sum_probs=253.7
Q ss_pred eeecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccC-CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcE
Q 001386 390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i 467 (1088)
..+.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.|
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceee
Confidence 34889999999999999 999999999999999999987 66666 7889999999999999999 79999999999
Q ss_pred EEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
++||+++|+++.++. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 999999999999986 45678899998875 4799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC---eeeEEEeCCCCCCC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDAGGGLPE 624 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~ 624 (1088)
+. +..+++|+.+.+..++...... ...+.++..+|+++++++-+.|..|.++.+... .....+.+|.-...
T Consensus 361 SD----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 361 SD----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred cc----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 76 4469999999887776655444 245778999999999999999999999986542 22334555543344
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccc
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 704 (1088)
-..+.|||||.+|++|..||.+.+||..+-+.+..++.|...+..+.|+|. ....++++
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~ 493 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATC 493 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEec
Confidence 567999999999999999999999999999999999999999999999974 34568899
Q ss_pred ccCccceecc
Q 001386 705 EAENKSEVEK 714 (1088)
Q Consensus 705 ~~d~~i~vw~ 714 (1088)
+-+|.|++|+
T Consensus 494 ~w~G~Ikiwd 503 (503)
T KOG0282|consen 494 GWDGLIKIWD 503 (503)
T ss_pred ccCceeEecC
Confidence 9999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=304.30 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=238.4
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg 408 (1088)
+..|.+.|++++|+|+|+ ++|+|+.|++|+|||+.+...... ........+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCC
Confidence 456899999999999998 799999999999999864211000 0000001122 346899999988 58
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++.++..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999886554 6789999999999997 667 8999999999999999999999888754 67
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCC-ceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1088)
+.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455677888899999997 7888888875 556999998743
Q ss_pred -----ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC-----------CCCCCCCceEE
Q 001386 566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 629 (1088)
Q Consensus 566 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 629 (1088)
..+..+.+|. ..+.+++|++++.++++|+.|+.|++|+......+..+.. ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888887 8899999999999999999999999999876654433221 12223589999
Q ss_pred EecCCCEEEEEeCCCcEEEEeC
Q 001386 630 FNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
|+|++..|++|+.+|.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=256.21 Aligned_cols=275 Identities=16% Similarity=0.256 Sum_probs=232.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
....|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3467999988 57789999999999999999987776 688999999999985 45 899999999999999999
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
|+++.++-+|...|..+.|+ ..++++++.|.++.+||+..... ...+.+|...|..+.|+. +++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 99999999999999999983 24999999999999999987653 346678888898888864 48888864
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 6679999999999999999999 77887776 578999999999999999999999999998765 58999995
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCc---------ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccc
Q 001386 632 KNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 702 (1088)
.+.+++|..||+|++||+..+.. +..+..|.+.|..+.|. ...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence 67899999999999999987633 33344566666666554 56788
Q ss_pred ccccCccceeccccccCCC
Q 001386 703 SVEAENKSEVEKPLFARPS 721 (1088)
Q Consensus 703 ~~~~d~~i~vw~~~~~~~~ 721 (1088)
+++.|.+|.+||.....+.
T Consensus 464 sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccCCCeEEEEEcCCCCcc
Confidence 9999999999997644433
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=241.33 Aligned_cols=290 Identities=16% Similarity=0.210 Sum_probs=255.5
Q ss_pred eecccCCCCceeeeecC---CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 328 QTLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~sp---dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+-.||+.+|..++||| +|- +|++++.|+.=.+-+-+||.-+.+ +.||.+.|....+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 45579999999999985 774 899999999999999999998877 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~ 483 (1088)
..+-.+-|+++.|-+.+|||.-+|..+..+ .|.--|.+++|+.|.+ +|++|+.++.++|+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhsf----~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhhh----hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 999999999999999999999999877632 5888999999999999 79999999999999998754 5678899
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|.+.|..+.|... .+.+++.+.|++||+||.+++.....+.. ..+|.++.++++|++|.++.. +.|..||..
T Consensus 142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG-----SSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC-----ceeEEeccc
Confidence 9999999988643 36888889999999999999998877754 357899999999999988753 349999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE-eCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+...++.+.... .|.+..++|+...+++|++|..++.||..+|..+..+ .+| ..+|.|+.|+|+|...++|+.
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCC
Confidence 999998887655 7899999999999999999999999999999999886 444 457999999999999999999
Q ss_pred CCcEEEEeCCCCCcc
Q 001386 643 ENRIKILETPESNSV 657 (1088)
Q Consensus 643 dg~i~iwd~~~~~~~ 657 (1088)
||+|++|....++..
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 999999998866543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=257.40 Aligned_cols=298 Identities=16% Similarity=0.223 Sum_probs=258.4
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..+.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 6678899999999999999999999966 489999999999999988762221 1277888999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
+.+.|.++++.+++++.|+.+++|++...+... ++.||+..|+++.|..... .+++|+.|.+|+.||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999986555 7889999999999998776 59999999999999999999988
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
++. ....+..++.. +..+++|-.|+.|++||.++.........++ .|+++..+++|..+.+++. +..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 765 33445555542 3578999999999999999999888887776 9999999999999999975 556999
Q ss_pred EeCCCCceeEEEecccc-ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 560 WNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
.|+++.+..+.+..... .....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 99999998888765431 12347889999999999999999999999999999999998776666799999999999999
Q ss_pred EEeCCCcEEEEe
Q 001386 639 VIANENRIKILE 650 (1088)
Q Consensus 639 ~~~~dg~i~iwd 650 (1088)
+++.++.+.+|.
T Consensus 448 sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 SADKQKAVTLWT 459 (459)
T ss_pred cccCCcceEecC
Confidence 999999999983
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=255.56 Aligned_cols=286 Identities=19% Similarity=0.229 Sum_probs=243.9
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
...|. .|.+++|||...+=+|+.+. -.+.||+..+...+++ +......|.++.|-.||+
T Consensus 23 ~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 23 HKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGR 81 (487)
T ss_pred ccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCe
Confidence 34565 99999999965543444433 7899999988877654 333567899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
+||+|...|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|+..|.
T Consensus 82 LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred EEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 99999999999999977754455 68899999999999999887 899999999999999999998779999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce-e
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-K 568 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~ 568 (1088)
+.+++|. ++.+++||+.||.|++||.+.......-..|+.+|.++.+-|.|..+++++. +.+++||+.+|.. +
T Consensus 158 ~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 158 CGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQLL 231 (487)
T ss_pred eeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCceeh
Confidence 9999876 5579999999999999999998766666678899999999999999999874 3499999996554 4
Q ss_pred EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
..+..|. ..|+|+++..++..|++++-|+.+++||+.+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+
T Consensus 232 ~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 232 TSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred hhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeee
Confidence 4444466 899999999999999999999999999999999999887654 4899999999999999999999887
Q ss_pred EeCC
Q 001386 649 LETP 652 (1088)
Q Consensus 649 wd~~ 652 (1088)
-+..
T Consensus 306 rr~~ 309 (487)
T KOG0310|consen 306 RRRE 309 (487)
T ss_pred ehhh
Confidence 6443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=265.28 Aligned_cols=285 Identities=23% Similarity=0.343 Sum_probs=252.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|..+|.+++|+|++++|++++.+|.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56799999999999999999999999999999999876433 5778999999999999998 799999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.+++.+..+..|...+.++.+.+. +.++++++.||.|++||+++.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9999889999999999999999654 568888888999999999988888888888889999999999998888763
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
++.|.+||..+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.. .+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEc
Confidence 4569999999998888888776 7899999999999999999999999999999888888755433 68999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
|++.++++++.+|.+++|+..+++....+..+...+.+++++ +++..+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999888888888888888888887 5677889999999999
Q ss_pred ecc
Q 001386 712 VEK 714 (1088)
Q Consensus 712 vw~ 714 (1088)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=234.75 Aligned_cols=317 Identities=16% Similarity=0.200 Sum_probs=244.3
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCccee-eeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
+.-....|..|++.+.+.+|||||. ++|+|+.|..|+|.|++..-... ...+..-+. ...++.- ..+-+|...|++
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~-qa~hPvI-RTlYDH~devn~ 177 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDT-QARHPVI-RTLYDHVDEVND 177 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCc-ccCCceE-eehhhccCcccc
Confidence 3444567889999999999999998 89999999999999997311000 000000000 0011111 137789999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+.|+|-...|++|+.|++|+++|+......+.++.+ ....+|.++.|.|.|. +++.|..-.++++||+.+-+|-..-
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeec
Confidence 999999999999999999999999865544433333 3456899999999999 8888998899999999998876443
Q ss_pred ---ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC-CC-CceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 482 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PG-LGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 482 ---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
.+|.+.|+++.+ ++.+.+.++++.||.|++||--+.+++.++.. |+ ..|.+..|+.+|+++++.+. +..
T Consensus 255 nPd~qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~ 328 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DST 328 (430)
T ss_pred CcccccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cce
Confidence 468999999988 55778999999999999999888887766543 43 37899999999999999875 667
Q ss_pred EEEEeCCCCceeEEEeccccccc--cEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+++|.+.+++.+..+.|....+. --+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..+.-||.
T Consensus 329 vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPV 407 (430)
T ss_pred eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCC
Confidence 99999999999999987631111 123455777777877754 357799999999887766654 34457899999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001386 634 GTLLAVIANENRIKILETP 652 (1088)
Q Consensus 634 ~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.-+++++.|..+++|--.
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 9999999999999999643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-28 Score=293.80 Aligned_cols=322 Identities=14% Similarity=0.178 Sum_probs=247.9
Q ss_pred cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCC----Ccc
Q 001386 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 431 (1088)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~----~~~ 431 (1088)
+|.+++|+..+....... ....+..|.+.|.+++|+|+|++||+|+.|+.|+|||+.+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 577888888765443211 11114569999999999999999999999999999998642 111
Q ss_pred c-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCe
Q 001386 432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1088)
Q Consensus 432 ~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1088)
. ....+. +...|.+++|++.... ++++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3467999999886433 7999999999999999999999999999999999999753 5579999999999
Q ss_pred EEEEECCCCCceEEecCCCCceEEEEEc-cCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccccccEEEEEEeC
Q 001386 511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
|++||+++......+..+ ..+.++.|+ ++|.++++++. ++.|++||++++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988777766644 578899995 57999999875 5569999998765 466677777 889999997
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC------eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 001386 589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
++.++++++.|++|++||+..+ .++..+..|.. .+.+++|+|++++|++|+.|+.|++|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 56667766543 578999999999999999999999999765432211110
Q ss_pred c-cCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEE
Q 001386 663 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1088)
Q Consensus 663 ~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 741 (1088)
. ...+ .. .....+...|.+++
T Consensus 749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC 770 (793)
T ss_pred ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence 0 0000 00 00012456799999
Q ss_pred EecCCceEEEeccccceEEEEc
Q 001386 742 YNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 742 ~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=227.86 Aligned_cols=279 Identities=16% Similarity=0.243 Sum_probs=242.1
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~- 406 (1088)
+.+.+|...|.+|+|+.+|. -||+|+.|+++.+|++..++.+... ...+|.+.|..++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCC
Confidence 56789999999999999999 5999999999999999988655432 2678999999999998
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
...++|+++.|.+|++||+..+++.... ... +.=..+.|+|+|+ +++.++.|..|.+.|.++-+.....+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~~-~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARI---ETK-GENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEe---ecc-CcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 7789999999999999999999876633 222 3334689999999 79999999999999999888776554 445
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.+..++|+. ++.+++.....|+|.|-.+...+.+..+..|...+.|+.|+|+|+++|+|+. +..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788863 4457777777899999999999999999999999999999999999999986 5669999999999
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
+++.+..+. .+|+.+.|+-+|++|++|++|..|-|=++++|..+..++..+. ...++|+|...+||.+++|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 9999999999999999999999999999999999999987654 6899999999999998876
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=216.19 Aligned_cols=311 Identities=17% Similarity=0.212 Sum_probs=238.7
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.++.+|+... .|.+|+|+|.|. +.|+|+...+.+|.....-..++... ..........-..-+.|.+.|.|.+|
T Consensus 24 ~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 24 EAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred EEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEe
Confidence 4566666554 999999999999 89999999999987665432221100 00000001111124569999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEcc--CCCcccceeEeccCCCCEEEEEecCC---CCcEEEEEEe-CCCcEEEEeCCCCcee
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~s-~d~~i~vwd~~~~~~~ 478 (1088)
||+|.+||+|+.|.+|++.-.+ +......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++=|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999999987554 33334444578889999999999654 222 566655 4778888899999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-------CCceEEEEEccCCCEEEEEeeCC
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.+.+|.+.|.++.- -++.++++|+.|.+|++||++-..++..+... ...|.++++.|.|++|+++..
T Consensus 177 ~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 999999999988752 26679999999999999999987776655432 246899999999999999875
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCCCCCCceEE
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~ 629 (1088)
+....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|++.. ..+..+-...+...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence 4458999999999999999988 99999999999999999999999999998642 1111111222334567889
Q ss_pred EecCCCEEEEEeCCCcEEEEeCC
Q 001386 630 FNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
|+|..--+++.+.|.++.+|.+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99999889999999999999764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=275.01 Aligned_cols=307 Identities=19% Similarity=0.245 Sum_probs=251.5
Q ss_pred cCCCCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
++...|.++..+|||. .+|+|+ .|+.++||+.+.--.-. ..++.. .+-.......|.+.|+|+.|+|||+
T Consensus 11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 4455789999999999 589999 89999999976421000 011111 1112223677999999999999999
Q ss_pred EEEEEeCCCEEEEEEccC---C------------CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~---~------------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
+||+|++|+.|.||+... + +..+....+.+|.+.|..++|+|++. ++++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 1 11234557889999999999999999 899999999999999999
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC------ceEEEEEccCCCEEEEEe
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~g~~l~~~~ 548 (1088)
.+++..+.+|.+.|..+.| +|-|++|++-+.|++|++|+...-.....+..+-. -+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999 56779999999999999999776555555544322 467899999999999988
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC-----CC------------EEEEEeCCCcEEEEEcCCCe
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~ 611 (1088)
.-+.+...+.|.+-.+.+.-..+-||. .++.++.|+|. .+ .+++|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 777778889999999999899999999 89999999972 11 46779999999999998888
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
++..+..-.. ..|..++|+|||..|.+++.||+|.++.+...
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 8776643332 36899999999999999999999999998854
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=241.31 Aligned_cols=290 Identities=18% Similarity=0.242 Sum_probs=239.3
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
....+.|..|||||+++++++-||.+.+|++..++...... |..... ++. +...|.|+.||.|...
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-----YQAqd~--fMM-------md~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----YQAQDN--FMM-------MDDAVLCISFSRDSEM 277 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-----hhhhcc--eee-------cccceEEEeecccHHH
Confidence 44567889999999999999999999999998776521100 111111 121 6789999999999999
Q ss_pred EEEEe-CCcEEEEEcCCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEE
Q 001386 813 LFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 890 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~ 890 (1088)
+|+|+ ||.|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++..++||++-|+...|
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 99998 9999999999999999997 8999999999999 8889999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCcceeeee
Q 001386 891 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 891 s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg--~~l~~~~d~~i~vwd~~~~~~~~~ 968 (1088)
++||.++++++.||+|++|+.++.+ |+..+.... ...+|.++-.-|.+ .++++-..+++++-++. |+.+++
T Consensus 357 t~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs 429 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS 429 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchh-----hhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee
Confidence 9999999999999999999999965 333332211 11257777776654 34444567889999887 777777
Q ss_pred eecCC--CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001386 969 WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1046 (1088)
Q Consensus 969 ~~~~h--~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~ 1046 (1088)
+..|. .+...+.+.||.|.++...+.|+.++.+.+.+|.+...+..+.-. +..++-+| ..+++++=+
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHP-HqNllAsYs 498 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHP-HQNLLASYS 498 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCc-ccchhhhhc
Confidence 76554 566778899999999999999999999999999998888755433 34488899 779999999
Q ss_pred CCCcEEEEe
Q 001386 1047 TNGEVYVIE 1055 (1088)
Q Consensus 1047 ~dg~v~~w~ 1055 (1088)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=224.99 Aligned_cols=287 Identities=10% Similarity=0.098 Sum_probs=238.5
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
.|+||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|+|+..+.+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4789999999999999999 899999999999999999999987 88999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-----CCCcEEEEeCC-------CCc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 476 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-----~d~~i~vwd~~-------~~~ 476 (1088)
+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|+ +++... ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999987763 3 3456899999999998 333332 23578999988 456
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
+...+..+...++.+.|.+ -+++|++|..||.|.+||++++.... ....|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 6788888889999999855 45799999999999999999976544 55778889999999999999999986 45
Q ss_pred eEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc--EE------------EEEcCCCeeeEEEeCCCC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--IK------------IWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~--i~------------iwd~~~~~~~~~~~~~~~ 621 (1088)
+-.+||..+-+.++++.... +|++.+++|....++.|+.... |. +|++-..+.+..+++|
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-- 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-- 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--
Confidence 58999999999999998755 9999999998888887653322 22 2222222344455555
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
..+|++++|+|+|+..++|+.||.|++.-...
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 45799999999999999999999999986653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=225.68 Aligned_cols=286 Identities=16% Similarity=0.239 Sum_probs=236.9
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
..-.+.|.++.||++|. ++++++.|.+++|||..+|+++++ ...+.-.|..++|......
T Consensus 11 ~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~ 70 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNT 70 (311)
T ss_pred ccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCce
Confidence 34456899999999999 577788999999999999998876 4446678888999887777
Q ss_pred EEEEeC--CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 411 LGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 411 las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
+..++. |.+|+.-++.+.+.++ -+.||...|+.++.+|-+. .+++++.|++|++||++..+|...+.....++
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi 145 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI 145 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc
Confidence 777766 7899999999998777 7889999999999999998 89999999999999999999988776555555
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEec---CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
. +| ++.|-++|++...+.|++||++.-. +-..+. ........+.|||||+.|+.+.. .+.+++.|.-
T Consensus 146 ~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf 217 (311)
T KOG1446|consen 146 A--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAF 217 (311)
T ss_pred e--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEcc
Confidence 4 44 6677888888888899999998753 222333 33557889999999999999864 5669999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
+|..+.++.++......-...+|.||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-.++++++
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~-- 294 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS-- 294 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--
Confidence 99999999988844444467889999999999999999999999999999999875 234688999999877776664
Q ss_pred CcEEEEeCC
Q 001386 644 NRIKILETP 652 (1088)
Q Consensus 644 g~i~iwd~~ 652 (1088)
..+.+|-..
T Consensus 295 s~l~fw~p~ 303 (311)
T KOG1446|consen 295 SNLVFWLPD 303 (311)
T ss_pred ceEEEEecc
Confidence 478888554
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=235.58 Aligned_cols=282 Identities=20% Similarity=0.373 Sum_probs=233.7
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC---C
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G 408 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d---g 408 (1088)
.|.+.|.+|... ++ .+.+|+.||.++|||.. |+.... ..||.++|.+++|.-- .
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 578899999998 45 68999999999999975 444433 7899999998888643 3
Q ss_pred CEEEEEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC--------------
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 473 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~-------------- 473 (1088)
..+++++.|.++++|.++.++.. .......||...|-+++..++|. .+++|+.|.+|+||+..
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 36999999999999999887653 22223459999999999999999 89999999999999932
Q ss_pred -----------CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCC
Q 001386 474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 542 (1088)
Q Consensus 474 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 542 (1088)
++.++-++.||..+|.++.|.. ...+++++.|.+|+.||+.+++....+.. +..+.++..+|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc
Confidence 1234567889999999999965 35899999999999999999888776654 34788999999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCc---eeEEEeccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCe-eeEEEe
Q 001386 543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-LLTTID 617 (1088)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~-~~~~~~ 617 (1088)
+|++++. +..+++||++++. ..+.+.+|. +.|.++.|+|... +|++++.|+++++||+++.+ ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999986 5569999999764 456778888 8999999999765 56679999999999999877 888888
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.|.. .|.++.|+. +..+++|+.|.+|+|+...
T Consensus 387 ~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHND--KVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCc--eEEEEeccC-CceEEeccCcceEEEeccc
Confidence 7744 688999985 6699999999999998654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=265.27 Aligned_cols=310 Identities=16% Similarity=0.209 Sum_probs=224.4
Q ss_pred hheeecc-cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...|.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+...... -+. .|... . +. -.+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~---~~~-~~~~~-~---~~-~~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAE---GDS-SCMYF-E---YN-ANSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccc---ccc-chhhh-h---hh-hccccCccc
Confidence 3456666 8999999999999999 79999999999999998754422100 000 00000 0 00 000011111
Q ss_pred ECC-----CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 404 WSP-----DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 404 ~s~-----dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
-++ .....-.+.....+.+-+..-.-.-+++..+.||.+.|..+.||.++ +|++++.|++|++|++...+|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 01111112222222221111111124455789999999999999876 6999999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
+.|. |...|+|++|+|..| +++++|+.||.||||++...+...-... ..-|++++|+|||+..++|+. .|.++
T Consensus 404 ~~F~-HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEe----ccEEE
Confidence 9998 999999999999854 7999999999999999876555444333 368999999999999999987 55699
Q ss_pred EEeCCCCceeEEEeccc-----cccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 559 EWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
+|+...-+......-+. .....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+++......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 99988777665554332 112379999998754 458889999999999999999999998765554556789999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 001386 633 NGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
||++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=228.68 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=253.6
Q ss_pred ecCCCCCeEEEEECC---CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~---dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
..||..+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.+|.+.|++.....+-. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 678999999999996 89999999999988888888887666 7899999999999988877 789999999999
Q ss_pred EEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC-ceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
+||.-+|..+++|. |..-|.+++| +.|.++|++|+.+..+|+||++..+ ....+.+|.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999997 8999999999 5577899999999999999998765 456788899999999999999999887
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+. ++.|++||.++++.++++... .+|+++..+++|+++.++ ..+.|.+||..+..+++.+..... |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc---ccc
Confidence 54 556999999999999998864 489999999998766554 567899999999999998877654 789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCccccc-ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccccc
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 706 (1088)
..++|+...+++|+.|..++.||..++..+... ++|.++|.|+.|+ |+|...++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999988885 8999999999998 67888999999
Q ss_pred CccceeccccccC
Q 001386 707 ENKSEVEKPLFAR 719 (1088)
Q Consensus 707 d~~i~vw~~~~~~ 719 (1088)
||+|++|.....+
T Consensus 288 DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 288 DGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEEecCCC
Confidence 9999999976443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=233.87 Aligned_cols=311 Identities=17% Similarity=0.269 Sum_probs=241.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCC-cEEEEEEeCCCcEEEEeC
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~s~d~~i~vwd~ 472 (1088)
-|...|.++... ++.|++|+.||.+++||.... ... .+.||.++|.+++|.-.+. .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388899999887 899999999999999999863 333 6889999999888854332 115999999999999998
Q ss_pred CCCcee----EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 473 VTGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 473 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+.++.. +.-.||...|.++.. .++|..+++|+.|.+|++|+..+.. .-.+..... -+.++.
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~-------~rrk~~----- 241 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSN-------RRRKKQ----- 241 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCc-cccccccch-------hhhhhh-----
Confidence 877543 344599999999987 5577899999999999999833211 111111000 000000
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
-+-=...++.++.++.||. .+|.++.|++ ...+++++.|.+|+.||+.++.....+.... ..+++
T Consensus 242 --------~~~~~~~~r~P~vtl~GHt---~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i 306 (423)
T KOG0313|consen 242 --------KREKEGGTRTPLVTLEGHT---EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCI 306 (423)
T ss_pred --------hhhhcccccCceEEecccc---cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEe
Confidence 0111123466788899999 9999999988 6789999999999999999999988886543 47899
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
..+|..++|++|+.|..+++||.+++.
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~----------------------------------------------------- 333 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGD----------------------------------------------------- 333 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCC-----------------------------------------------------
Confidence 999999999999999988888766320
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
T Consensus 334 -------------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 334 -------------------------------------------------------------------------------- 333 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd 868 (1088)
|. -..+++.+|.+.|.++.|+|.+...|++|+.|+++++||
T Consensus 334 ---------------------gs------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 334 ---------------------GS------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred ---------------------Cc------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 00 012345568888889999998888999999999999999
Q ss_pred cCCce-eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 869 ARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 869 ~~~~~-~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
+++.+ .+..+.+|...|.++.|+ ++..+++||.|.+|+|+.-..
T Consensus 375 vRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 375 VRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred eccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99987 899999999999999998 567999999999999987543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=218.90 Aligned_cols=286 Identities=13% Similarity=0.173 Sum_probs=238.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+.||+.+++.+.++.+|.+|.+++.|.+..||-..+|+.+. ++.||++.|+|+...-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 478999999999999999999999999999999998898776 7899999999999999999 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe-----cCCeEEEEECC-------CCCceEEecCCCCceEEEEEc
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-----VDGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 538 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s 538 (1088)
|+++|+++..++ ...+|..+.|++ +|.+++... ..+.|.++|++ ..++...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 567899998865 444555443 34569999998 344567777788899999999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 539 ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 539 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
|-++.|++|.. ++.|.+||.++|. .+...+.|. ..|+.+++++|..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999976 4559999999984 445556666 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC--CC------------CCcccccccccCcceeeeecCCCcceeccc
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET--PE------------SNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~--~~------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 683 (1088)
... ++++.+++|....++.|+.....-|--. .. .+.+...++|-++|++++++
T Consensus 230 te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 653 5899999998778877765433333221 11 23455678899999999998
Q ss_pred cCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|+|+..++|+.||.|++...+
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 678889999999999986543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=257.59 Aligned_cols=289 Identities=12% Similarity=0.124 Sum_probs=225.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSL 410 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~ 410 (1088)
.|-..|....+++|+. .+++++.+..+..|+...|..+. +.............+.+|.+.|.+++|+| ++.+
T Consensus 18 ~~~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 18 RHFLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQK 90 (493)
T ss_pred cceeccccccccCCCC-CcEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence 3455788888899977 35677777888899876664321 11111111122334789999999999999 8999
Q ss_pred EEEEeCCCEEEEEEccCCCc----ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 411 LGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
||+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|..
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 99999999999999987532 1234478899999999999998644 799999999999999999999999999999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCc-eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.|.+++|++ ++.+|++++.||.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|.+||+++.
T Consensus 170 ~V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 170 QITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ceEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 999999955 6789999999999999999998888777777654 4567899999999888766556788999999875
Q ss_pred c-eeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 566 A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 566 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
. .......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 248 ~~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 248 ASPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CCceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 4 333333222 24566678999999999887 59999999999998877765432 235678888884
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=263.73 Aligned_cols=304 Identities=17% Similarity=0.243 Sum_probs=238.8
Q ss_pred ccccEEEEEEecCCceEEEec--cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
+...|.++..+|+|..+++++ .||.+.+|+.+.-.. ....++..-...+.+ . ..|...|.|+.|+|||
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~~l~k~l~~--m--~~h~~sv~CVR~S~dG 81 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNENLPKHLCT--M--DDHDGSVNCVRFSPDG 81 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhcccchhhee--e--ccccCceeEEEECCCC
Confidence 345689999999999999999 799999998654221 111222211111111 1 2499999999999999
Q ss_pred CEEEEEe-CCcEEEEEcCC------------------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 811 AYLFSAS-GGVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 811 ~~l~~~~-dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
++||+|+ |+.|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.|||..+
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccc
Confidence 9999999 56789998762 346778899999999999999 899999999999999999999
Q ss_pred ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-
Q 001386 872 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 950 (1088)
Q Consensus 872 ~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~- 950 (1088)
.+.+..+.+|.+.|..+.|.|-|+||||-+.|++|+||++.+....+ .+..+..+......+..+.|||||.+|++.
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeecchh
Confidence 99999999999999999999999999999999999999987744322 233333333333468899999999999993
Q ss_pred -eC---CeEEEEEcCcceeeeeeecCCCcCEEEEEEee-----CCC------------EEEEEeCCCcEEEEEcCCCceE
Q 001386 951 -HE---THLAIYEAEELTCLKQWFPISSVPISQATFSC-----DCR------------MVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 951 -~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-----dg~------------~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.. ..+.|.+-.+.+.-.. +.||.+++.++.|.| ..+ .+|+|+.|++|.||.....+.+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 32 3688888877776666 558999999999998 111 5789999999999998776665
Q ss_pred EEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1010 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
..+. .+.. -..+.++|+| ||-.|++++.||+|.+..+.+.+
T Consensus 318 ~vi~---~lf~------~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 318 FVIH---NLFN------KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhhh---hhhc------CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 4333 1111 1347799999 89999999999999999997654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=262.36 Aligned_cols=284 Identities=17% Similarity=0.287 Sum_probs=248.4
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.|...+.+..|. +| .+++|+.|++|++||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 356689999999 44 489999999999999999987753 178999999999999888999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
++|+.|.++++||+.+|++.. .+.+|.+.|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998887 78899999999987653 68889999999999999999999999999999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-ceeEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 570 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 570 (1088)
.. ++.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.++ +++.+
T Consensus 338 ~~----~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QL----DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Ee----cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 87 3569999999999999999999999999999999999988776 88999887 456999999999 99999
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
+.+|. .-+..+. ..++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+++||
T Consensus 409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 6665444 45789999999999999999999999999874 22345666654 46889999999999999
Q ss_pred CCCCCccccc
Q 001386 651 TPESNSVDAA 660 (1088)
Q Consensus 651 ~~~~~~~~~~ 660 (1088)
+.++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9999877655
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-26 Score=219.72 Aligned_cols=271 Identities=16% Similarity=0.190 Sum_probs=229.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC--CCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~--d~~i~v 469 (1088)
+......|.++.|+++|.+|++++.|.+++|||..+|+.++ ++..+...|..+.|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 55577899999999999999999999999999999998777 5667777899999988887 4555555 889999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
.++.+.+.++.|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....++ ++|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997654 699999999999999999888887777666665 789999999999864
Q ss_pred CCCCceeEEEEeCCCC--ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCC-c
Q 001386 550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 626 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 626 (1088)
...|.+||++.- .+..++.-........+.+.|+|||++++.++..+.+++.|.-+|..+.++..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 336999999853 344444443222467899999999999999999999999999999999998876543322 4
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccc-ccCcceeeeecCC
Q 001386 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI 675 (1088)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~ 675 (1088)
..+|+||++++++|+.||+|.+|+++++..+..+.+ +...+.++.|+|.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 788999999999999999999999999999888888 5778888888754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=219.40 Aligned_cols=286 Identities=17% Similarity=0.243 Sum_probs=228.5
Q ss_pred CceeeeecC--CCCeEEEEEcc-----cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-C
Q 001386 336 SPMSMDFHP--VQHTLLLVGTN-----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D 407 (1088)
Q Consensus 336 ~V~~v~~sp--dg~~lla~g~~-----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-d 407 (1088)
.=.+++||| +++..+|++.. .|++.|-++..++-+... .-+ .-+..+..++||+ .
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~--~s~---------------d~~D~LfdV~Wse~~ 72 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQEC--QSY---------------DTEDGLFDVAWSENH 72 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEE--Eee---------------ecccceeEeeecCCC
Confidence 346889999 44433333322 488999999755544321 111 2457899999999 4
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
...+++++.||++++||+... -.++..++.|...|.++.|++-.++ .++++|.|++|++||...+..+.++.+|...
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC 149 (311)
T ss_pred cceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccE
Confidence 567888999999999995433 3566678999999999999998776 5777799999999999999999999999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCE-EEEEeeCCCCceeEEEEeCCCC-
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEG- 565 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~- 565 (1088)
|....|+|. ....+++++.||++++||++.......+..|...+.++.|+.-... +++++. ++.|+.||++.-
T Consensus 150 Iy~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r 224 (311)
T KOG0277|consen 150 IYQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLR 224 (311)
T ss_pred EEEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcc
Confidence 999999987 4469999999999999999998888889999999999999986555 555543 667999999864
Q ss_pred ceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEec-CCCEEEEEeC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLLAVIAN 642 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~ 642 (1088)
..+..+.+|. -.|+.+.|+|.. ..|++++.|-+++|||... ...+.+...|. ..+..+.|++ ++.++|..+.
T Consensus 225 ~pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht--EFv~g~Dws~~~~~~vAs~gW 299 (311)
T KOG0277|consen 225 TPLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT--EFVCGLDWSLFDPGQVASTGW 299 (311)
T ss_pred ccceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc--eEEeccccccccCceeeeccc
Confidence 4567777777 899999999975 5677899999999999884 34555555553 3577888888 6789999999
Q ss_pred CCcEEEEeC
Q 001386 643 ENRIKILET 651 (1088)
Q Consensus 643 dg~i~iwd~ 651 (1088)
|+.++||+-
T Consensus 300 De~l~Vw~p 308 (311)
T KOG0277|consen 300 DELLYVWNP 308 (311)
T ss_pred ccceeeecc
Confidence 999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=216.17 Aligned_cols=253 Identities=16% Similarity=0.247 Sum_probs=214.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|...|.+++|+.||.+||+|+.|+++.+|+++.++..+. ....+|.+.|-.++|.|.... .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 667999999999999999999999999999999998854433 357899999999999998776 789999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
++.+++........+.+. ++| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998876666665 344 56788999999999999999987665543322 23567788987777776653
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
|.+.|.|.....-+.+..++.|. ....|+.|+|+|+++++|+.|..+.+||++..-+++.+....- +|..+.||
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 36779998888889999999998 8889999999999999999999999999999888888876544 68999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 001386 632 KNGTLLAVIANENRIKILETPESNSVDA 659 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 659 (1088)
.||++||+++.|..|-|=++++|..+..
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEE
Confidence 9999999999999999988887755443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=225.56 Aligned_cols=306 Identities=13% Similarity=0.188 Sum_probs=236.1
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcc
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 701 (1088)
...+.+.+|+|||.++|+|+.|..|+|+|++..-... .+. .+
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~~-----------------------------------em 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KPK-----------------------------------EM 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---chh-----------------------------------hh
Confidence 4468899999999999999999999999987321000 000 00
Q ss_pred cccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCC
Q 001386 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQP 781 (1088)
Q Consensus 702 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 781 (1088)
..+..+.. ......+- .|...|+.+.|.|....|++++.|++++++|+......
T Consensus 154 ~~~~~qa~------------hPvIRTlY--DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK------------ 207 (430)
T KOG0640|consen 154 ISGDTQAR------------HPVIRTLY--DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK------------ 207 (430)
T ss_pred ccCCcccC------------CceEeehh--hccCcccceeecchhheEEeccCCCeEEEEecccHHHH------------
Confidence 00000000 00001111 27889999999999999999999999999998654320
Q ss_pred CCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEe---cCCCCCeEEEEEcCCCCcEEEE
Q 001386 782 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNNVIAI 857 (1088)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~las 857 (1088)
.....+ ....+|.++.|+|.|.+|++|. ..++++||+++.++...- ..|.+.|+++.+++ .+++.++
T Consensus 208 -rA~K~~-------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvT 278 (430)
T KOG0640|consen 208 -RAFKVF-------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVT 278 (430)
T ss_pred -HHHHHh-------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEE
Confidence 000011 1567899999999999999998 478999999999887654 36788999999999 8999999
Q ss_pred EeCCCeEEEEEcCCceeeeeec-cccC-CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCe
Q 001386 858 GMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 935 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~~~~~l~-~h~~-~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 935 (1088)
|+.||.|+|||--+++++.++. +|.+ .|.+..|..+|+++.+.|.|.++++|.+.++.......=....+... .-
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~---~r 355 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK---HR 355 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh---hh
Confidence 9999999999999999998885 4654 78999999999999999999999999999965433222221122221 34
Q ss_pred EEEEEcCCCCEEEEE--eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 936 THIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 936 ~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
+...|+....+++.- ..+.+.-||.+++..+..+..+|++.+..+.-||.+.-+++++.|..+++|--
T Consensus 356 tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 356 TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 567788888888874 44679999999999999999999999999999999999999999999999963
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-27 Score=237.77 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=234.6
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
..+.|.+++|+|...+=++.++.-.+.+|+...... ... +. .....+.++.|..||++
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~------------------~k~--~s--rFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV------------------RKT--FS--RFKDVVYSVDFRSDGRL 82 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh------------------hhh--HH--hhccceeEEEeecCCeE
Confidence 346899999999887766666677788887543221 000 00 14678999999999999
Q ss_pred EEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEEC
Q 001386 813 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 891 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s 891 (1088)
+|+|+ .|.|+|||+++...++.+.+|..++....|+|+++..+++|++|+.+++||+.+......+.+|++.|.|.+|+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 99998 79999999888778889999999999999999999999999999999999999998877999999999999999
Q ss_pred CC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeee
Q 001386 892 DA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 892 ~d-g~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~ 970 (1088)
|- +.+++|||.||+|++||+.... ......-.+ .+|..+.|-|.|..+|++..+.|+|||+.+|...-...
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh
Confidence 95 5589999999999999998742 222222222 26899999999999999999999999999776655545
Q ss_pred cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCc
Q 001386 971 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1050 (1088)
Q Consensus 971 ~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~ 1050 (1088)
..|...|+|+++..|+..|++|+-|+.|+|||+.+.+.+..+... . ..++++.+| |+..++.|..||.
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~----~-------pvLsiavs~-dd~t~viGmsnGl 302 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP----G-------PVLSIAVSP-DDQTVVIGMSNGL 302 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc----c-------ceeeEEecC-CCceEEEecccce
Confidence 569999999999999999999999999999999999999887611 1 246788899 7799999999998
Q ss_pred EEEEeC
Q 001386 1051 VYVIEP 1056 (1088)
Q Consensus 1051 v~~w~l 1056 (1088)
+.+=+.
T Consensus 303 v~~rr~ 308 (487)
T KOG0310|consen 303 VSIRRR 308 (487)
T ss_pred eeeehh
Confidence 887744
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=247.29 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=241.0
Q ss_pred ceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~ 416 (1088)
..-+.||..+ +||+|.. ..|++|+..+++.... ..-++..|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4567788655 5777653 6899999999986543 2224789999999999999999999
Q ss_pred CCEEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE-eccCCccEEEEeee
Q 001386 417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 494 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~ 494 (1088)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw- 309 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW- 309 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE-
Confidence 9999999999887666 5667 99999999999 34 789999999999999998876655 8899999999999
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
++|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+. ..+..|++||..+|+.+.....
T Consensus 310 -s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 310 -SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred -CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 55778999999999999999988899999999999999999999 5567777765 5588899999999998887765
Q ss_pred cccccccEEEEEEeCCCCEEEE--EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 574 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
. ..|..+.|++..+-+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 58999999999887777 55778999999999999999987755 6999999999999999999999999998
Q ss_pred CCC
Q 001386 652 PES 654 (1088)
Q Consensus 652 ~~~ 654 (1088)
-..
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=219.33 Aligned_cols=277 Identities=18% Similarity=0.236 Sum_probs=221.1
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
-.+.|.+++|||....+++.||-|++||+|+++. |.... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 4568999999996666888999999999999987 33332 1245699999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+-.|+|||.|++|+.||.+...++.++. -...++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 47789999999999887665589999999999999999999988886 45677777
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--ce
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 567 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~ 567 (1088)
.. --.+++.+..++.|.+|++++........ .-.-.+.|++...|....+.|+. ++.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 22489999999999999997765433221 22336889999888888888876 444666655554 55
Q ss_pred eEEEeccccc------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 568 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
-.+++.|... -..|++++|+|.-..|++++.||++.+||-+....+...+.+. .+|.+.+|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 5667777621 2367889999999999999999999999998877777766554 3699999999999988765
Q ss_pred C
Q 001386 642 N 642 (1088)
Q Consensus 642 ~ 642 (1088)
.
T Consensus 313 g 313 (347)
T KOG0647|consen 313 G 313 (347)
T ss_pred e
Confidence 3
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=237.82 Aligned_cols=309 Identities=17% Similarity=0.215 Sum_probs=241.4
Q ss_pred cCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCC
Q 001386 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1088)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 398 (1088)
+..+|..+-..|.+|+.-|.++++.|.|.+ +++|+.|.+|++||+........ .-+.+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~--------------~fr~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR--------------SFRQLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch--------------hhhccCcccccc
Confidence 445788888899999999999999999996 89999999999999986543221 111224445678
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCc---------ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
|.+++||+.|..|++.+.....+|+|-..-+. ++....-+||...++|.+|+|+.+. .+++++.||++++
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999988888899998765332 3334456799999999999999988 7899999999999
Q ss_pred EeCCCCce-eEEec-----cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce---EEecCCCC--ceEEEEEc
Q 001386 470 WDAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGL--GCTRMAYS 538 (1088)
Q Consensus 470 wd~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~--~v~~~~~s 538 (1088)
||+..-+. +..++ +..-+++.++| +++|..|++|+.||.|.+|+....... ..-..|.. .|+|++||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 99886543 33332 23456777777 668889999999999999998654432 23334444 89999999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCC-ceeEEEeccccccccEEEEEEeCCCCEEEEEe------CCCcEEEEEcCCCe
Q 001386 539 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 611 (1088)
Q Consensus 539 ~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 611 (1088)
+||++|++-+. +..+.+||++.. +++....+.. ...+-+.++|+|+.+.|++|+ ..|++.+||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999998765 556999999865 4454444433 124567789999999999976 45789999999999
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.+..+... ...|..+.|+|.-+.|.+|+.||++++|=-.
T Consensus 449 ~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 99988766 3368889999998999999999999997433
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=232.16 Aligned_cols=293 Identities=14% Similarity=0.193 Sum_probs=235.2
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeee----ccccccceeeeecCCCCCeEEE
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|+.... +|.. +.-..+.+..- .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 356678888999999999999 589999999999999999986532 1111 00111222221 4899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999998777 6889999999999987666 68999999999999999999999999
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+|...|.++.... -++.+..|+.|+++++|++ .......+.++.+.+.|++|-.+. .+++|+. ++.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence 9999999987643 3356666779999999999 555667778888899999996654 5667764 566999999
Q ss_pred CCCceeEEEecc-ccc--------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC----eeeEEEeCCCCCCCCceEE
Q 001386 563 SEGAIKRTYQGL-QLQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 563 ~~~~~~~~~~~~-~~~--------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 629 (1088)
...+++.+.... ... ...|++++..|..+.+++|+.+|.|++|-+.++ +++..+.. ...|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEE
Confidence 998887765432 111 127899999999999999999999999999887 44445543 33589999
Q ss_pred EecCCCEEEEEe
Q 001386 630 FNKNGTLLAVIA 641 (1088)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1088)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999776664
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=234.63 Aligned_cols=298 Identities=17% Similarity=0.246 Sum_probs=226.2
Q ss_pred cccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCC
Q 001386 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 811 (1088)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 811 (1088)
+|+..|.++++.|.|-++++|+-|..|++||+..-.... +- +. .-.......|+++.+|+.|.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------~~--------fr---~l~P~E~h~i~sl~ys~Tg~ 227 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------RS--------FR---QLQPCETHQINSLQYSVTGD 227 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccc------hh--------hh---ccCcccccccceeeecCCCC
Confidence 488889999999999999999999999999987543311 10 00 01112566899999999998
Q ss_pred EEEEEe-CCcEEEEEcCCceeEEE------------ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-eeee
Q 001386 812 YLFSAS-GGVISLYIVMTFKTILT------------IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISK 877 (1088)
Q Consensus 812 ~l~~~~-dg~i~iwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~-~~~~ 877 (1088)
.|++.+ ....+|+|-...+.... -++|...++|.+|+|.+...+++++.||+++|||+...+ .+..
T Consensus 228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 887776 67799999875544432 347888999999999888899999999999999997643 2233
Q ss_pred ec-----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-Ee
Q 001386 878 LE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 951 (1088)
Q Consensus 878 l~-----~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~ 951 (1088)
++ +..-+++.++|++||+++|.|..||.|.+|+..+..... .+.....|.. ...|++++||+||++|++ +.
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhhhccC
Confidence 32 244578999999999999999999999999985533222 2223333332 236999999999999999 99
Q ss_pred CCeEEEEEcCcce-eeeeeecC-CCcCEEEEEEeeCCCEEEEEeC------CCcEEEEEcCCCceEEEeccccccCCCCc
Q 001386 952 ETHLAIYEAEELT-CLKQWFPI-SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLRPTTS 1023 (1088)
Q Consensus 952 d~~i~vwd~~~~~-~~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1023 (1088)
|++++|||++..+ ++..+..- ...+-+.++||||.++|++|+. .|++.+||..+.+.+..+...
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-------- 456 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-------- 456 (641)
T ss_pred CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--------
Confidence 9999999998654 44332211 2456678999999999999975 478999999999999888622
Q ss_pred cccccceEEEECCCCCCEEEEEeCCCcEEE-EeCCCCC
Q 001386 1024 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPG 1060 (1088)
Q Consensus 1024 ~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~-w~l~~~~ 1060 (1088)
......+.|+| .=+++++|+.||++++ ||...+.
T Consensus 457 --~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 --TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred --CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 13356789999 6688999999999987 5665544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=247.11 Aligned_cols=237 Identities=10% Similarity=0.093 Sum_probs=185.7
Q ss_pred ecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEEccCCCc-c----cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~d-g~~las~~~dg~i~vwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999996 89999999999999999986532 1 123357899999999999999874 567999999
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEE-----EEEccC
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 540 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s~~ 540 (1088)
+|++||+.+++.+..+. |...|.+++|+ ++|.+|++++.|+.|++||++++.....+..|.+.+.+ ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slsws--pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWN--IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEEC--CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999887776 66789999995 46789999999999999999999888888888765432 345689
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
+.++++++.++..++.|++||++. +..+..+..+. +.+.+......+++.++++|+.|+.|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887665557899999985 55665554332 12333334445568889999999999999998764 3334333
Q ss_pred CCCCCCceEEEecCC
Q 001386 620 GGLPENPRICFNKNG 634 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~ 634 (1088)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 334467889999854
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-24 Score=232.93 Aligned_cols=566 Identities=13% Similarity=0.139 Sum_probs=353.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc-EEEEEEeCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-l~l~s~s~d~~i~vw 470 (1088)
+.|-...-..-.||+|++++.....+ .|.||.+.+|.+++ .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 34444444556799999999887554 59999999999888 68899999999999987764 478899999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeee------------eeCCceEEEEEecC--CeEEEEECCCCCce-EEecCCCCceEEE
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPH------------AKENIHFIFSISVD--GKIKAWLYDSLGAR-VDYDAPGLGCTRM 535 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~~~l~s~~~d--g~i~iwd~~~~~~~-~~~~~~~~~v~~~ 535 (1088)
|...+..++++..+. ++..+.+. ...+-..+.+.+.+ ++++-+.+.+.... ..+......-.++
T Consensus 88 d~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 999999998886433 22222221 01111111111111 11221211111100 0000011113567
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE-EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC--Cee
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL 612 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~ 612 (1088)
.+++.|.+.+.+. +..+.+|+..++.... ....+..|...+++.+++|++++++++..||.|.+|.--. +..
T Consensus 167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 8888888877765 3348899888755111 1111222335689999999999999999999999996433 222
Q ss_pred --eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceee
Q 001386 613 --LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1088)
Q Consensus 613 --~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 690 (1088)
...+.- +...|.+++|+++|.+|.+|+..|.+.+|.+.+++ .+.++.
T Consensus 242 ~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR---------------------------- 290 (792)
T KOG1963|consen 242 ETCTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPR---------------------------- 290 (792)
T ss_pred ccceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccc----------------------------
Confidence 223333 34479999999999999999999999999999875 222221
Q ss_pred cCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCC
Q 001386 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 770 (1088)
Q Consensus 691 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~ 770 (1088)
-.+.|..+.+|||+........|..|.+.....-....
T Consensus 291 ------------------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 291 ------------------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ------------------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 23567788888898888888888888887654322211
Q ss_pred CCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-CCCEEEEEeCCcEEEEEcCCceeEEEec-----CCC-----
Q 001386 771 STEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIM-----PPS----- 839 (1088)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~dg~i~iwd~~~~~~~~~~~-----~~~----- 839 (1088)
..+|....+... ......-.+.++++| -+..+..+..|.|.+||+.+.+.+..+. .+.
T Consensus 329 ----------tIsgi~~~~~~~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~ 397 (792)
T KOG1963|consen 329 ----------TISGIKPPTPST-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI 397 (792)
T ss_pred ----------hccCccCCCccc-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence 011110110000 011345567788888 4445555558999999998877665543 122
Q ss_pred -CCeEEEEEcCCCCcEEEEEe--------CCC--eEEEEEcCCce----eeeee-ccccCCeeEEEECC-CCC-EEEEEe
Q 001386 840 -PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSE----VISKL-EGHSKRVTGLVFSD-ALN-ILVSSG 901 (1088)
Q Consensus 840 -~~i~~l~~sp~d~~~lasg~--------~dg--~i~lwd~~~~~----~~~~l-~~h~~~V~~l~~s~-dg~-~las~s 901 (1088)
..+++++.+- .|.+++++- .|| .+++|-..... +...+ ..|...+...+|.+ ... .++++|
T Consensus 398 ~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 398 QVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred EEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec
Confidence 2468888888 699999863 333 67788765432 22222 34777666666543 333 799999
Q ss_pred CCCcEEEEEcCCCce-----eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcC
Q 001386 902 GDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP 976 (1088)
Q Consensus 902 ~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 976 (1088)
.||.++||-+...+. ....+.....-|. .+++.++|+.||..|+++.+++|.+||..+...+.........+
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~ 553 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWP 553 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccc
Confidence 999999999944221 1233333333333 37899999999999999999999999999843222222222334
Q ss_pred EEEEEEee----CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC------CccccccceE---EEECCCCCCEEE
Q 001386 977 ISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHA---IAAHPLKPTQFA 1043 (1088)
Q Consensus 977 v~~l~fs~----dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~p~d~~~l~ 1043 (1088)
+..+.|.. |+. ++....+.+.+|++.+..+............. .....+-... +++.| ..+.
T Consensus 554 ~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~~~~ 628 (792)
T KOG1963|consen 554 IAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---ELLL 628 (792)
T ss_pred hHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---cchh
Confidence 44444433 333 33446788999999999887733322211110 0011111222 33444 3333
Q ss_pred --------EEeCCCcEEEEeCCCCC
Q 001386 1044 --------VGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1044 --------~~~~dg~v~~w~l~~~~ 1060 (1088)
+.+.|+.+.+|+...++
T Consensus 629 ~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 629 VVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred hhhhhhhhcccccceEEEecCCCch
Confidence 67888888888886655
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=219.12 Aligned_cols=297 Identities=16% Similarity=0.249 Sum_probs=246.1
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+++.|.||++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|++++|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 56677899999999999987666 899999999999999999999976 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEc------cCC--------C----------------------cc-cceeEeccCCCCEEEE
Q 001386 405 SPDGSLLGVAYSKHIVQLYAY------HGG--------S----------------------DA-RQQLEIDAHVGNVNDL 447 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~------~~~--------~----------------------~~-~~~~~~~~h~~~v~~~ 447 (1088)
++.+.++++++.|++..||.. ... + .+ .++..+.+|.+.|.+.
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 999999999999999999972 110 0 00 1245688999999999
Q ss_pred EecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC
Q 001386 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1088)
Q Consensus 448 ~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1088)
.|...|+ -+++++.|.+..+||+++|+.+..+.||....+.++-+| ..+++++.+.|.+.++||++..
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRea-------- 346 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREA-------- 346 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhh--------
Confidence 9999999 689999999999999999999999999999999988866 4478999999999999987621
Q ss_pred CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 528 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
| ..+..|+||. ..|+++.|..+ ..+++|++|.+|++||+
T Consensus 347 ----I---------------------------------~sV~VFQGHt---dtVTS~vF~~d-d~vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 347 ----I---------------------------------QSVAVFQGHT---DTVTSVVFNTD-DRVVSGSDDRTVKVWDL 385 (481)
T ss_pred ----c---------------------------------ceeeeecccc---cceeEEEEecC-CceeecCCCceEEEeee
Confidence 1 1234577777 89999999876 57899999999999999
Q ss_pred CCC-eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccc----ccccccCcceeeeecCCCcceecc
Q 001386 608 NKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD----AAGVLSDNLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 608 ~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~~~~ 682 (1088)
++. .++.++.... .++.++.+..+..++.--++..|++||+...+... ..++|...|.|++|....
T Consensus 386 rNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh------ 456 (481)
T KOG0300|consen 386 RNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH------ 456 (481)
T ss_pred ccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC------
Confidence 875 4677776554 47889999989999999999999999999775443 346788889999987432
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
| -.-+++++.|..+.-|++..
T Consensus 457 -------------p-~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 457 -------------P-ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -------------c-ccccccccccceeeeeEecc
Confidence 1 23467888888888888764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=230.82 Aligned_cols=285 Identities=17% Similarity=0.237 Sum_probs=239.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+..|.+.|..+.|-++...|++|+.|..|++|++..++. ....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-hhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 566999999999999999999999999999999988762 23336788889999999999999 788999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+...+...++.||.+.|+++.|.-.. ..+++|+.|.+|+.||+....+..++.. ...+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc--
Confidence 99999999999999999999985443 3499999999999999998666554332 2344445544 455666655
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC--CCCCceEE
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 629 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 629 (1088)
+..|+.||.+++.+......+. .|+++..++++..+++++.|.++.+.|+++.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg----~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG----RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc----ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 4459999999999988888754 899999999999999999999999999999988888775432 22478899
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCc--ceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
|||++.|+++|+.||.|+||++.+++....+...... |++++|+ +.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999888877765554 9999998 457788888888
Q ss_pred ccceecc
Q 001386 708 NKSEVEK 714 (1088)
Q Consensus 708 ~~i~vw~ 714 (1088)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9998884
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=211.66 Aligned_cols=243 Identities=19% Similarity=0.275 Sum_probs=204.4
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEEc
Q 001386 793 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNA 869 (1088)
Q Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~i~lwd~ 869 (1088)
....|...++++++ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ +-. .|++|+.||.|.+|+.
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEc
Confidence 33469999999999 788999998 89999999999999999999999999999998 554 8999999999999999
Q ss_pred CCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 870 ~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.+.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+......+.. .-+.+.|+|.|.++++
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVV 185 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999999876443332222 1345999999999999
Q ss_pred EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccc
Q 001386 950 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1029 (1088)
Q Consensus 950 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1088)
+..+.|-+|.+.+-........ ...+.++.|- ++..|++|..|+.|.+||.+++...+.+..+. .++..
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--------~RVK~ 254 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--------NRVKD 254 (362)
T ss_pred EeccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--------hheee
Confidence 9999999999998877766443 3456666664 57789999999999999999988888777443 34544
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1030 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1030 ~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
+..--.| ++.+|++++.||.|+|||+...
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 4444456 7789999999999999999654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=237.09 Aligned_cols=284 Identities=18% Similarity=0.278 Sum_probs=241.6
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE-EE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 403 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~-l~ 403 (1088)
.+.+.|.||+..|..+++.++. .+++++.||++++|+-..++-+.+ ..+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence 3557899999999999998877 478999999999999877665543 225668888887 88
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 404 ~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
+-+ |+-.|++|+.|++|.+|...+...+. .+.+|...|.+++...++. ++|||.|.++++| ..+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW--~~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVW--RIGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEe--cchhhhcccC
Confidence 886 66679999999999999999987665 7899999999999887775 8999999999999 5677788899
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+|...|++++..+.. .++||+.|.+|++| ..++...++.+|...|..+++-+++.++-+ + .++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklW--k~~~~l~tf~gHtD~VRgL~vl~~~~flSc-s----NDg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLW--KGGTLLKTFSGHTDCVRGLAVLDDSHFLSC-S----NDGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeec--cCCchhhhhccchhheeeeEEecCCCeEee-c----CCceEEEEec
Confidence 999999999886543 89999999999999 457788899999999999999888766644 3 2777999998
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+|+.+..+.+|+ .-+.++....++..++++++|++++||+.. .+.+.+..+.. .|+++.+-++|. +++|++
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 899999999999 899999988888999999999999999976 77777776643 588899888885 678889
Q ss_pred CCcEEEEeCCCC
Q 001386 643 ENRIKILETPES 654 (1088)
Q Consensus 643 dg~i~iwd~~~~ 654 (1088)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999988754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-26 Score=237.41 Aligned_cols=295 Identities=18% Similarity=0.216 Sum_probs=238.0
Q ss_pred cCCCCce---eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 332 ~h~~~V~---~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
.|...|. ++..++.+.++|.+|+.||.|++|++..-......+ | ...+..|...|..++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------~-----~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--------Y-----IASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc--------h-----hhhhhhhHhHHhhHHhhcCC
Confidence 4554566 666665555589999999999999987644321100 0 11256699999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe-cCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEE-----
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTYS----- 480 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~l~l~s~s~d~~i~vwd~~~~~--~~~~----- 480 (1088)
+.|+++|.|.+|++|+...+. .....+++.|...|.|+++ .++.. ++++||-|+.|.+||+.+|. .+.+
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 999999999999999999874 1222368899999999999 66666 89999999999999999883 3322
Q ss_pred ---ec-cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 481 ---~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
+. |+...|++++. +++|..+++|+..+.+++||.++...+..+.+|...|..+..++||+.+++++. +++
T Consensus 163 ~~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 23 78889999988 556689999999999999999999999999999999999999999999999976 667
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
|++||+...+++.++..|. ..|.++..+|+-..+++|+.||.|..=|+++......+-.. ..+|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCC
Confidence 9999999999999999988 77999999999999999999999999999884333222222 124677777765555
Q ss_pred EEEEeCCCcEEEEeCCC
Q 001386 637 LAVIANENRIKILETPE 653 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~ 653 (1088)
+-+++.|+.|+-|...-
T Consensus 312 ~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceeeeccccceecCCcc
Confidence 57788899999997663
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=244.58 Aligned_cols=273 Identities=15% Similarity=0.232 Sum_probs=211.7
Q ss_pred cccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCC-----------------------CC--CCCcccCCCCCC-
Q 001386 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS-----------------------TE--VPPRLYQPRHGP- 785 (1088)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~-----------------------~~--~~~~~~~~~~~~- 785 (1088)
.|.+.|.++.||+||++|++++.||.|+||.+........ .. ..-+.-..+++.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999876111000 00 000000001100
Q ss_pred --c---------ceee-ccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCC
Q 001386 786 --Q---------FMVN-DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 852 (1088)
Q Consensus 786 --~---------~~~~-~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 852 (1088)
+ +... -....+|...|..+.||.++ +|++++ |.+|++|++...+++..|. |...|||++|+|-|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 0 0000 00122699999999999987 555555 9999999999999999998 999999999999999
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 853 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 853 ~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
+|+++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+.+|.+++|+...-+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999988776555544 77999999999999999999999999999987766655555554444434
Q ss_pred CCeEEEEEcCCCC--EEEEEeCCeEEEEEcCcceeeeeeecCCC-cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 933 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPISS-VPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 933 ~~v~~~~fs~dg~--~l~~~~d~~i~vwd~~~~~~~~~~~~~h~-~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
..|+.+.|.|... .|+++.|.+|+|||..+...+..+...|+ ..-....|+.||++|++++.|..|++|+...-.
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4799999987654 78889999999999988888877654443 333567899999999999999999999985544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=212.84 Aligned_cols=313 Identities=14% Similarity=0.153 Sum_probs=233.6
Q ss_pred ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccccc
Q 001386 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1088)
Q Consensus 657 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1088)
+..+++|.+.|++++|+ .||+.+++++.|++|++|++.--.......+... ...+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCC
Confidence 34678999999999997 7899999999999999999653222222222111 12346
Q ss_pred EEEEEEecCCceEEEec-cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 737 ISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
.+.++|+||.+.++... ....+++|.+..... -.......-||-.. + ..-|...+..+-...++.+|++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~--------f-~~kh~v~~i~iGiA~~~k~ims 204 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-GSGSHHFVHIDNLE--------F-ERKHQVDIINIGIAGNAKYIMS 204 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc-CCCCcccccccccc--------c-chhcccceEEEeecCCceEEEE
Confidence 78899999988776554 567889998764432 00111111122100 1 0126667778888889999999
Q ss_pred Ee-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC---Cc-----eeeeeeccccCCee
Q 001386 816 AS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---SS-----EVISKLEGHSKRVT 886 (1088)
Q Consensus 816 ~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~---~~-----~~~~~l~~h~~~V~ 886 (1088)
++ |.+|.+|++. |+.+..+......-+..+.|| +|+++|+++..-.|+||.+- .| ..+..|+||.+.|.
T Consensus 205 as~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 205 ASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL 282 (420)
T ss_pred ecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee
Confidence 98 7889999999 899888887777778899999 99999999999999999873 23 24577899999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCceee--eeeeecCCCC-ccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcc
Q 001386 887 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 963 (1088)
Q Consensus 887 ~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~ 963 (1088)
.++||++...++|.|.||+++|||++-.-... ...++..... .........++.+|.|..||++....+++|..++|
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g 362 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDG 362 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccC
Confidence 99999999999999999999999987522111 1222222110 11112344899999999999999999999999999
Q ss_pred eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 964 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 964 ~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+....+...|...|+++.|++||+++++++ |..++|..-..|
T Consensus 363 ~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 363 KDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred ccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 988888888999999999999999999885 788888764444
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=210.73 Aligned_cols=276 Identities=16% Similarity=0.166 Sum_probs=219.0
Q ss_pred ecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
-...+..|.+++||| ...+++++|.|++|++|++........ .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 344678999999999 666777999999999999987422222 24668999999999999998 79999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|+.+++ +..+..|.++|..+.|.+..+-..|++||.|++|+.||.+....+..+..++ .++++. --..+++++..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~D--v~~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAAD--VLYPMAVVATA- 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehh--ccCceeEEEec-
Confidence 999995 5567779999999999877776789999999999999999888887776655 333333 23345555544
Q ss_pred CCCceeEEEEeCCCCcee-EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCC------
Q 001386 551 KEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------ 621 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------ 621 (1088)
+..|.+|+++.+... +...... +..+++++..+|....+.|+-+|.+.|..+..+ +.-.+++.|..
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 445999999765432 2222222 367899999999888899999999999999886 44445555432
Q ss_pred -CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCccee
Q 001386 622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 622 -~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
.-.|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..|...+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 22478899999999999999999999999999888888899999999999997665553
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=239.07 Aligned_cols=356 Identities=17% Similarity=0.189 Sum_probs=261.8
Q ss_pred EEEEC-CCCCEEEEEeCCCEEEEEEccCCCcc---cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-
Q 001386 401 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 475 (1088)
Q Consensus 401 ~l~~s-~dg~~las~~~dg~i~vwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~- 475 (1088)
.+..+ |.++||.+|+.||.|++|++...... .....+..|...|+.++...+++ .++++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 36788999999999999998754431 12346788999999999999998 7999999999999999887
Q ss_pred -ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc--eE--------Eec-CCCCceEEEEEccCCCE
Q 001386 476 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 543 (1088)
Q Consensus 476 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~g~~ 543 (1088)
-|+.++..|...|.++++. ..+...+++|+.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6888999999999999984 33557999999999999999997633 11 122 55668999999999988
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
+++|+.. ..+++||.++++.+..++||. ..|.++..++||..+++++.||+|++||+...+++.++..|..
T Consensus 186 ivsGgte----k~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGTE----KDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCcc----cceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 8888764 449999999999999999999 9999999999999999999999999999999999999988865
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.|+++..+|+-..+.+|+.||.|..-|+.+......+.....+|..+..+ .+...+-.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~----------------------~~~~~~Wv 314 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLH----------------------EHDNSVWV 314 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhc----------------------cccCCcee
Confidence 58999999999999999999999999988764444444444444433333 22222345
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
+..|+.|+-|.... ..++++.|.... -+.+......+... +
T Consensus 315 tTtds~I~rW~~~~---------------------~~~l~~s~~~~~-~~T~~~~~~~~~~~-----------------t 355 (735)
T KOG0308|consen 315 TTTDSSIKRWKLEP---------------------DIALSVSGDLDF-FSTDSNNHSCDLTN-----------------T 355 (735)
T ss_pred eeccccceecCCcc---------------------ccccccCCCCCc-ccccCCCccccccC-----------------C
Confidence 55667777776441 113333333222 11111111111000 0
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEec
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 836 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~ 836 (1088)
. ... . .....+..-++-.|.+.+++-. .|.+.+||+-....+..+.
T Consensus 356 p--~~v--i---~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 356 P--DSV--I---PGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred C--cee--c---cCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 0 000 0 0223344455666888888886 8999999998776665554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=243.83 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=209.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc----------cceeEeccCCCCEEEEEecC-CCCcEEEEEEeC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 463 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~ 463 (1088)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4456777777888777777777777777776544322 21224779999999999999 777 8999999
Q ss_pred CCcEEEEeCCCC-------ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 464 d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
|++|++||+.++ .++..+.+|...|.+++|+|.. +.+|++++.|+.|++||+++......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCe-
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 611 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 611 (1088)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ......+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999875 5669999999999998888887 23345678899888888754 47899999998754
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCccccccc-ccCcceeeeecC
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 674 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p 674 (1088)
++.....+. ...+....|+++++++++++ .|+.|++||+.++..+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333222 22355667899999999887 599999999998876554332 233445555554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=208.67 Aligned_cols=200 Identities=18% Similarity=0.239 Sum_probs=165.8
Q ss_pred CCCCeeEEEEec-CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001386 797 SQEAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 797 ~~~~v~~~~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
|..+|.++.+++ +++.+++++ |++|++|+....+.+.++.+|...|...+|+|...+++++++.||.+++||++....
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 556666666665 344455556 999999999999999999999999999999999999999999999999999987443
Q ss_pred eeeeccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE--Ee
Q 001386 875 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VH 951 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~--~~ 951 (1088)
...+..|...|.++.|+. +...|+|++.|+.|++||+..-. .++..+.+|.- .|..++|||...-+++ +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 444899999999999986 66889999999999999998733 23444456654 6999999998765554 58
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEee-CCCEEEEEeCCCcEEEEEc
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|-++++||...+.........|..-|..+.||+ ++.++|+++.|+.+.||+-
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 899999999977655555778999999999998 7789999999999999983
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=220.28 Aligned_cols=627 Identities=15% Similarity=0.157 Sum_probs=331.9
Q ss_pred eeecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCccc---ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
.++.+|+..|+.+.|+| +..+||+|+.|..|+||.+..|.... .-..+.+..-.|-++.|+|.... +++ .+..|
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g 150 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHG 150 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCc
Confidence 34889999999999999 77899999999999999998543211 12223344457889999998774 344 45588
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCC-ceEEEEEccCCCE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRR 543 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~v~~~~~s~~g~~ 543 (1088)
+++|||+.+++.+..+.+|...|.++.| +.||.++++++.|+.|+|||.+.... +.....|++ .-..+.|-.+-..
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 9999999999999999999999999998 67899999999999999999986544 444455554 3345778777778
Q ss_pred EEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeeeEE--EeCC
Q 001386 544 LFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTT--IDAG 619 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~--~~~~ 619 (1088)
|++.+.+......|++||.+. +..++++.... ...+..--|.||.+.++. |-.+.++..+.+...++... +...
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~t 306 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELT 306 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhc
Confidence 888777666677799999875 34455554433 234555568899877665 44677888888776543321 1110
Q ss_pred CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC-----------cc---------------------cccccccCcc
Q 001386 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESN-----------SV---------------------DAAGVLSDNL 667 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------~~---------------------~~~~~~~~~v 667 (1088)
........++-|...+-+..+. ..+++.+.... .+ .-+.+....+
T Consensus 307 -le~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~v 383 (1012)
T KOG1445|consen 307 -LEEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVV 383 (1012)
T ss_pred -chhhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccc
Confidence 0001122233332211111111 11222222110 00 0111222233
Q ss_pred eeeeecCCCcceecccc--------CCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEE
Q 001386 668 RKLSVNPISTVTGAGIA--------NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR 739 (1088)
Q Consensus 668 ~~~~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~ 739 (1088)
..+.+.|.......... .....|.....+ ..+-+...+.-.+-+. .+... ..+.......+..
T Consensus 384 qKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~p---paaP~~~~n~~~~~~~---~Pd~~---~qpaV~~~~e~r~ 454 (1012)
T KOG1445|consen 384 QKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTP---PAAPRPMSNNNSSSNN---VPDVQ---EQPAVPKKEEVRE 454 (1012)
T ss_pred cccccCchhccCCCCCCCCCCCcccccCCCCccccCC---CCCCCccccccccccC---CCccc---cCCCcCcchhhhh
Confidence 44444433222210000 000000000000 0000000000000000 00000 0000000011111
Q ss_pred EEEec----CC---------------ceEEEeccccceEEEEccCCCCCCC-CCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 740 LTYNN----GG---------------QAIFALASNGVHLMWRWPRNDLTLS-TEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 740 ~~~s~----~g---------------~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
+.+-| +| ..+-+.+.. .+.+ ......... ....+.+....-|+..-. .+..+...
T Consensus 455 l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~-~~~~--~kP~S~plt~~~s~~s~~~P~~~ksvPe--~~~~~~g~ 529 (1012)
T KOG1445|consen 455 LDYRPYEKENGVHTPNADADSTQGNSSPISTISPE-PVTI--VKPASTPLTDSVSTPSVVGPAFGKSVPE--QPPVNFGK 529 (1012)
T ss_pred hcccccccccCccCCCcccccccCCCCCccccCCC-cccc--cCCCCcccccccccccccCccccccCCC--CCCcccCC
Confidence 11100 00 000000000 0000 000000000 000000000111100000 00000000
Q ss_pred CeeEEEEecCCCEEEEEe-------CCcEEEEEcCCceeE------EEecCC----CCCeEEEEEcCCCCcEEEE--EeC
Q 001386 800 AVPCFALSKNDAYLFSAS-------GGVISLYIVMTFKTI------LTIMPP----SPTATSLAFNPHDNNVIAI--GMD 860 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-------dg~i~iwd~~~~~~~------~~~~~~----~~~i~~l~~sp~d~~~las--g~~ 860 (1088)
.+ +.......+.+ =|.+.-|.-..|... ..+++- .++... |+. +..++|+ .+.
T Consensus 530 ~~-----sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnG--fca-n~~rvAVPL~g~ 601 (1012)
T KOG1445|consen 530 PI-----SATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNG--FCA-NNKRVAVPLAGS 601 (1012)
T ss_pred Cc-----cccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCc--eee-ccceEEEEecCC
Confidence 00 00000111111 012222221112111 111110 111122 333 4556664 456
Q ss_pred CCeEEEEEcCC-ceee-eeecc--ccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceee--eeeeecCCCCccCCC
Q 001386 861 DSTILIYNARS-SEVI-SKLEG--HSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQTPDGVMTLAP 933 (1088)
Q Consensus 861 dg~i~lwd~~~-~~~~-~~l~~--h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~ 933 (1088)
.|.|-||+++. |++- ..+.+ ....|+.+.|.| |...||.+++||.|++|.+..+.... ...-..+..|. .
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~---e 678 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG---E 678 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc---c
Confidence 78999999976 3321 11221 345699999999 77889999999999999998754222 11222333333 3
Q ss_pred CeEEEEEcCCC-CEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001386 934 SETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 934 ~v~~~~fs~dg-~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~ 1011 (1088)
.|+++.|+|-. ..|++ +.|-+|++||+.++..... +.+|.+.|..++|||||+.+++.+.||+|+||+-.+++.-..
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~-l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR-LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe-eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 79999999964 44555 6899999999999988777 559999999999999999999999999999999888865322
Q ss_pred eccccccCCCCccccccceEEEECCCCCCEEEEEeCCC----cEEEEeCCCCC
Q 001386 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG----EVYVIEPNEPG 1060 (1088)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg----~v~~w~l~~~~ 1060 (1088)
-. .++-+ .+.-.+.|-- ||.++++.|-|. .|.+||...-.
T Consensus 758 Eg------~gpvg--tRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 758 EG------KGPVG--TRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred cC------CCCcc--CcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhcc
Confidence 21 11111 1222345554 788888888775 67888875533
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=222.68 Aligned_cols=250 Identities=22% Similarity=0.287 Sum_probs=213.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccc--------------eeEe-ccCCCCEEEEEecCCCCcE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--------------QLEI-DAHVGNVNDLAFSAPCKQI 456 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~--------------~~~~-~~h~~~v~~~~~s~d~~~l 456 (1088)
...|.-+|.+++++||+++..+++.+++|.-|++.+|+..+. ...- ++|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 456999999999999999999999999999999999874311 1011 37888999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|.. ....+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999999999999999999999999954 445799999999999999999888889999999999998
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1088)
...-++.+-+++. +.++++|++.. +..-.+.++. +.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888888877765 56699999943 3444666766 88999999765 68999999999999999999998877
Q ss_pred eCCCCC----------CCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 617 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 617 ~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
....+. ..|++++..|...++|+|+.+|.|++|.+..+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 542211 15778999999999999999999999998876
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=218.06 Aligned_cols=282 Identities=16% Similarity=0.193 Sum_probs=244.0
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..+.++...|... .+.+|+.|.++.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788888888744 689999999999999999988876 89999999999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc--CCccEEEEe
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLC 492 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~ 492 (1088)
+.|..|+||......... ....|..+|+.+...|.|. |+++++.|++..+.|+++|.++..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998876444 5778999999999999999 899999999999999999999876653 334578888
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1088)
||| ||..+.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|++++. ++.|.+||++.-+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 865 7789999999999999999999999999999999999999999999999986 4449999999888888887
Q ss_pred ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
... ...+.++.|.+.|.+++.++.|=+|++++-.+. ..+..+..+. ...+++.|....+++++++.|..++++.
T Consensus 429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccchhheEEee
Confidence 766 457999999999999999988877777775544 3444444443 3578999999999999999999988875
Q ss_pred C
Q 001386 651 T 651 (1088)
Q Consensus 651 ~ 651 (1088)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=247.31 Aligned_cols=280 Identities=17% Similarity=0.240 Sum_probs=242.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
.+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 367788888888 77899999999999999999876552 3889999999999987555 89999999999999999
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
+|+|.+.+.+|...|.++.. ....+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++.
T Consensus 280 sg~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---- 349 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---- 349 (537)
T ss_pred CCcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence 99999999999999999976 44578899999999999999999999999999999999987 889999886
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-eeeEEEeCCCCCCCCceEEEec
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
++.|.+||+.++++++.+.+|. ..|.++.+... ..+++|+.|++|++||+.+. +++.++..|... +..+ ..
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~ 421 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LL 421 (537)
T ss_pred CceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--cc
Confidence 4469999999999999999998 99999988765 89999999999999999999 999999877653 3333 34
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccccccc-ccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
.+++|++++.|++|++||..++..++.+.+ +...+.++++. ...+++++.+++++
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVK 477 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeE
Confidence 578999999999999999999999999888 55666655543 35678889999999
Q ss_pred eccccccCCC
Q 001386 712 VEKPLFARPS 721 (1088)
Q Consensus 712 vw~~~~~~~~ 721 (1088)
+||+......
T Consensus 478 l~dl~~~~~~ 487 (537)
T KOG0274|consen 478 LWDLRSGTLI 487 (537)
T ss_pred EEecccCchh
Confidence 9997754433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=217.58 Aligned_cols=280 Identities=16% Similarity=0.281 Sum_probs=224.0
Q ss_pred CCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccc
Q 001386 623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1088)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 702 (1088)
+.+.++...|....+.+|+.|..+.++|..+++.+..+.+|.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~-------------------------------------- 261 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT-------------------------------------- 261 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcc--------------------------------------
Confidence 356777777777889999999999999999888877777654
Q ss_pred ccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCC
Q 001386 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPR 782 (1088)
Q Consensus 703 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 782 (1088)
..|..+.++++...+++++.|..|++|.......
T Consensus 262 --------------------------------kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------------- 295 (506)
T KOG0289|consen 262 --------------------------------KKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------------- 295 (506)
T ss_pred --------------------------------eEEEEEEeccchhheeecCCcceEEeeccccccC--------------
Confidence 4555666666666677777777777776554322
Q ss_pred CCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC--CCCeEEEEEcCCCCcEEEEEe
Q 001386 783 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~ 859 (1088)
. .....|..+|+.+...|.|.|+++++ |++..+.|+.++..+...... .-.+++.+|+| ||.++++|.
T Consensus 296 ----~----~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt 366 (506)
T KOG0289|consen 296 ----P----TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGT 366 (506)
T ss_pred ----c----cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccC
Confidence 0 11124899999999999999999998 889999999999988776642 34689999999 899999999
Q ss_pred CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
.||.|+|||+.++..+..|.+|+++|..++|+.+|-+||++++|+.|++||+..-+.. ..++..+. .++.++.
T Consensus 367 ~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~--kt~~l~~~-----~~v~s~~ 439 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF--KTIQLDEK-----KEVNSLS 439 (506)
T ss_pred CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc--ceeecccc-----ccceeEE
Confidence 9999999999999999999999999999999999999999999999999999874422 22222222 1488999
Q ss_pred EcCCCCEEEEE-eCCeEEEEEcC--cceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 940 FHKDQTRFLLV-HETHLAIYEAE--ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 940 fs~dg~~l~~~-~d~~i~vwd~~--~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|.+.|.+|+++ .+=+|++++-. +..++.. ...|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~-~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE-LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EcCCCCeEEeecceeEEEEEecccccceeeeh-hhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999999995 44455555533 4556655 4467889999999999999999999999888764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=222.93 Aligned_cols=293 Identities=11% Similarity=0.156 Sum_probs=232.8
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
.+-+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+..++.+ +..|.+.|..|+
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC 116 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence 4455677999999999999998844799999999999999999888876 777999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+.. ..+++++.|.+|+.|.++.. .++ ++.+ .+.+..+.-+..+. .++|+|. .|.|||.....++..+.-
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSW 185 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeec
Confidence 987 77888899999999998863 222 3333 23455666555555 6888876 499999999999999988
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
....|.++.|+|... ..|++++.|+.|.+||++........... ..-..++|+|.+-.++++.. +..++.+|.+
T Consensus 186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence 888999999987644 58888889999999999988776543321 23456899996666666643 6669999987
Q ss_pred CC-ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 564 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.- ..+..+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+..-...... ....|.++.||.|.+++++|++
T Consensus 260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCC
Confidence 53 3455555555 99999999999999999999999999999877654433222 2235899999999999999999
Q ss_pred CCcEEEEeCCCCCc
Q 001386 643 ENRIKILETPESNS 656 (1088)
Q Consensus 643 dg~i~iwd~~~~~~ 656 (1088)
|+.|++|.....+.
T Consensus 336 d~nvRlWka~Asek 349 (433)
T KOG0268|consen 336 DGNVRLWKAKASEK 349 (433)
T ss_pred Ccceeeeecchhhh
Confidence 99999998775433
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=206.04 Aligned_cols=272 Identities=20% Similarity=0.300 Sum_probs=215.5
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
.+.|+.|.|+|.+.. |++++.||++++||+...+.... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 568999999999885 55667999999999988755432 22899999999996 667889
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEee
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1088)
|+.||.|+++|+.++... .+..|..+|.|+.+++... .+++||.|++|++||.+...+...+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998654 3778999999999998777 79999999999999998766665555 3348888865
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCceEEecCC--CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC--CceeE
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIKR 569 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~~~ 569 (1088)
.+..|+.|+.|..|.+||+++.......... .-.+.++++-|++.-.++++.+ |...+..+|... .....
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhce
Confidence 5568999999999999999987765533222 2368899999988888887762 333333344431 13344
Q ss_pred EEeccccc------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 570 TYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 570 ~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.|+.|... ..+|++++|+|--..+++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||+++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 56666521 247899999999999999999999999999999988888654 235899999999999999975
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=232.71 Aligned_cols=247 Identities=19% Similarity=0.303 Sum_probs=218.5
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecC-CCCCeEEEEECCCCC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGS 409 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~V~~l~~s~dg~ 409 (1088)
..+.+.|+++.|+++|. +||+|..+|.|.|||..+.+.+.. +.+ |...|.+++|+ +.
T Consensus 214 ~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVGSLAWN--SS 271 (484)
T ss_pred ecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeEEEecc--Cc
Confidence 34478999999999999 799999999999999998887765 555 99999999998 78
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
.+.+|+.++.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|+.+.|||.....++..+..|.+.|.
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEeccceeee
Confidence 899999999999999998876543 3789999999999999999 899999999999999988899999999999999
Q ss_pred EEeeeeeCCceEEEEE--ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 490 SLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
+++|+|-..+ +||+| +.|++|++||..++..+.... .+..|.++.|++..+-|+++... .+..|.||+..+.+.
T Consensus 348 A~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~--s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 348 ALAWCPWQSG-LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGY--SENQITLWKYPSMKL 423 (484)
T ss_pred EeeeCCCccC-ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCC--CCCcEEEEeccccce
Confidence 9999987654 78876 569999999999776665543 45689999999999888877653 355799999999999
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+..+.+|. ..|..++++|||..+++|+.|.++++|++-+.
T Consensus 424 ~~~l~gH~---~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLGHT---SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecCCc---ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999 88999999999999999999999999998764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=209.07 Aligned_cols=322 Identities=16% Similarity=0.257 Sum_probs=232.3
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
.+.||...|+.++-..... ++.+++.|.+.+||.+++|+|+.++.||.+.|+++.|+++ +.++++++.|++..||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s--~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS--GLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEeccc--cceEEEccCCcchHHHH
Confidence 6889999999999876655 8999999999999999999999999999999999999764 56999999999999996
Q ss_pred CCCCCceEEe---cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE
Q 001386 516 YDSLGARVDY---DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 516 ~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1088)
..-.-..... ..|.+. .....+-.......+....+ ..+| ..++..+.+|. ..|.++.|-..|+.
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d~d~~~~sD-~~ti-------RvPl~~ltgH~---~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRDTDSSEKSD-GHTI-------RVPLMRLTGHR---AVVSACDWLAGGQQ 286 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhcccccccccccccccC-Ccee-------eeeeeeeeccc---cceEehhhhcCcce
Confidence 3211000000 000000 00000000000000000000 1112 23456778877 89999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC-cccccccccCcceeee
Q 001386 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLS 671 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~ 671 (1088)
+++++.|.+..+||+++|.++..+.+|.. ..+.++-+|..+++++.+.|.+.++||....- .+..++
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ---------- 354 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ---------- 354 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeec----------
Confidence 99999999999999999999999998865 57888889999999999999999999987320 000000
Q ss_pred ecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEE
Q 001386 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1088)
Q Consensus 672 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 751 (1088)
T Consensus 355 -------------------------------------------------------------------------------- 354 (481)
T KOG0300|consen 355 -------------------------------------------------------------------------------- 354 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCce
Q 001386 752 LASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 830 (1088)
Q Consensus 752 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~ 830 (1088)
+|...|+++.|..|.+. ++++ |.+|++||+.+..
T Consensus 355 --------------------------------------------GHtdtVTS~vF~~dd~v-VSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 355 --------------------------------------------GHTDTVTSVVFNTDDRV-VSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred --------------------------------------------ccccceeEEEEecCCce-eecCCCceEEEeeecccc
Confidence 35566666666655443 3444 6667777776533
Q ss_pred -eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-----ccccCCeeEEEECCCC--CEEEEEeC
Q 001386 831 -TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDAL--NILVSSGG 902 (1088)
Q Consensus 831 -~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l-----~~h~~~V~~l~~s~dg--~~las~s~ 902 (1088)
.+.++. ...++..++.+. ++.++|.--++..|++||+.... +..+ .+|..-|.|++|+.+. .-|+++|.
T Consensus 390 splATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF 466 (481)
T KOG0300|consen 390 SPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF 466 (481)
T ss_pred Ccceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCcccccccccc
Confidence 344444 456788899998 88899999999999999998543 3333 5799999999998765 34889999
Q ss_pred CCcEEEEEcCC
Q 001386 903 DAQIFVWDVDG 913 (1088)
Q Consensus 903 Dg~i~iwd~~~ 913 (1088)
|+.+.-|++..
T Consensus 467 DR~v~gW~in~ 477 (481)
T KOG0300|consen 467 DRMVAGWKINT 477 (481)
T ss_pred cceeeeeEecc
Confidence 99999999976
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=189.14 Aligned_cols=300 Identities=15% Similarity=0.213 Sum_probs=231.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccC------CCc--cc----ceeEeccCCCCEEEEEecCCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG------GSD--AR----QQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~------~~~--~~----~~~~~~~h~~~v~~~~~s~d~~~l~l~ 459 (1088)
.-.....|.+++|+|.|.+.|+|+...+++|--... +.. .. ..+.-+-|.+.|.|.+|+|+|+ +++
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--lia 105 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIA 105 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEE
Confidence 344678899999999999999999999988864432 111 01 1223456889999999999999 899
Q ss_pred EEeCCCcEEEEeCCCCcee-----EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEE
Q 001386 460 TCGDDKTIKVWDAVTGSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1088)
Q Consensus 460 s~s~d~~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 534 (1088)
+|+.|++|++.-.....+. ..|.-|.+.|..++|...+
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~------------------------------------- 148 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP------------------------------------- 148 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCC-------------------------------------
Confidence 9999999999765543322 2444566666666653221
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
+..|..|++++ .++..|++-|..+|+..+.+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-..++.
T Consensus 149 ---~s~~~il~s~g---agdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 149 ---ESGGAILASAG---AGDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred ---CcCceEEEecC---CCcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceee
Confidence 12345566654 457779999999999999999999 666655 34467899999999999999999888888
Q ss_pred EEeCCCC-----CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCcee
Q 001386 615 TIDAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1088)
Q Consensus 615 ~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 689 (1088)
++....+ ...|.+++..|.|++|++|-.|....+||+..++.++.+..|...|.++.|+
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs---------------- 282 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS---------------- 282 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC----------------
Confidence 7754311 2357899999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEcc
Q 001386 690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1088)
Q Consensus 690 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~ 764 (1088)
|...++++++.|..|++-|+...-..+...... ..|...+-.+.|.|..-.+++.+.|.++.+|.++
T Consensus 283 ------p~a~yllt~syd~~ikltdlqgdla~el~~~vv--~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 283 ------PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV--AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ------CCceEEEEecccceEEEeecccchhhcCceEEE--EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 557789999999999999876433333222222 2377888889999999889999999999999753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=204.84 Aligned_cols=251 Identities=20% Similarity=0.309 Sum_probs=185.9
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCC-----cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
.+++|...|++++||.||++||+++.|++|++|++..-. +++.. -.-+..+.++|+||-+. ++++.-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n----ve~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN----VEYDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc----ccCCCceEEEECCCcce-EEEEEccCC
Confidence 488999999999999999999999999999999997532 12211 11124678999999986 556666677
Q ss_pred cEEEEeCCC---CceeEE--------e-ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceE
Q 001386 466 TIKVWDAVT---GSRTYS--------F-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 533 (1088)
Q Consensus 466 ~i~vwd~~~---~~~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 533 (1088)
++++|-+.. |..... | +.|...+..+.. .+++.+|++++.|..|.+|+++ ++....+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 899997643 222111 1 235556665554 5678999999999999999998 777777777777777
Q ss_pred EEEEccCCCEEEEEeeCCCCceeEEEEeCCC---C-----ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001386 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESE---G-----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 534 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1088)
..+.||+|+++++++...+ |.+|.+-- | ..+..+.||. ..|..++|+++..++++.+.||++++|
T Consensus 233 ~aavSP~GRFia~~gFTpD----VkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPD----VKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ceeeCCCCcEEEEecCCCC----ceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEEEecCCcEEEe
Confidence 8899999999999988555 99998642 2 2345677877 999999999999999999999999999
Q ss_pred EcCC-------CeeeEEEe--CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 606 DMNK-------VQLLTTID--AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 606 d~~~-------~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
|.+- .+.+.... .+.....-..++++|+|..||.... ..+.++..++++..
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDY 365 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccc
Confidence 9753 22222221 1111122347999999998887765 47888887766443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-21 Score=212.11 Aligned_cols=280 Identities=16% Similarity=0.213 Sum_probs=225.5
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
..|+..-+.++|.|+|. ++.+++.||.|++|+..+-..... ...-++..|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEeec--ccc
Confidence 37888999999999999 788889999999999877632110 012267778777764 569
Q ss_pred EEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-+..++.....+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999887543 2445667899999999999 8999999999999999999999999999999999
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC--------CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+.++| ++.+|++.+.||.|++||+.++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 99954 6679999999999999999987765544332 235678999999776666654 556999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.++.....+.....+ ..+..+.|+|+|.||++++.||.|.|||.++-.. |.....|.+++|.|+.+.+-....
T Consensus 218 ~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred CCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence 999998888765522 3499999999999999999999999999987222 333456899999999887766655
Q ss_pred CCcEEEE
Q 001386 643 ENRIKIL 649 (1088)
Q Consensus 643 dg~i~iw 649 (1088)
.|...+|
T Consensus 291 ~g~~~~~ 297 (933)
T KOG1274|consen 291 LGTLGVS 297 (933)
T ss_pred ccccccC
Confidence 5555444
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=218.42 Aligned_cols=284 Identities=14% Similarity=0.222 Sum_probs=233.1
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
.+.||...|.+++=+|..-. .+++|+.||.|++||+.+..++.++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998732 699999999999999999999999999999999999854 4799999999999998
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEE-
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL- 594 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 594 (1088)
++.. ...++. ....+..+.-+..+..++++|. .|.|||.....+++.+.-.. +.|.++.|+|....++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 222222 2234555666666777888764 39999999888888888766 7899999999876555
Q ss_pred EEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC-CcccccccccCcceeeeec
Q 001386 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673 (1088)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 673 (1088)
+++.|+.|.+||++++.++..+...-. -+.++|+|++-.+++|+.|..++.+|+... .++....+|...|..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 566999999999999999988765543 478999999989999999999999999865 5666778888888888887
Q ss_pred CCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEec
Q 001386 674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753 (1088)
Q Consensus 674 p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 753 (1088)
|-|+-+++|+.|.+|+++....+.+...+... ....|.++.||.|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 55788999999999999998765554443322 345789999999999999999
Q ss_pred cccceEEEEccC
Q 001386 754 SNGVHLMWRWPR 765 (1088)
Q Consensus 754 ~dg~v~iw~~~~ 765 (1088)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=202.51 Aligned_cols=244 Identities=17% Similarity=0.250 Sum_probs=204.4
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+..|.++|+++|.+ |.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 367899999999996 9999999999999999999887665 56789999999999988642258999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
+...-.++.++++|.+.|+.++++|++ ++.++.+.|+.++.||+-.++.-........ ...+.|+|.|.+++.++.
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~~- 188 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSGR- 188 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEec-
Confidence 999999999999999999999998754 7899999999999999988877665554432 334899999999888874
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
..|-+|.+.+......+.... .+.++.|. ++..+++|++|+.|.+||..+..+...+..|.. .|..+.+
T Consensus 189 ----~~i~i~q~d~A~v~~~i~~~~----r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~ 257 (362)
T KOG0294|consen 189 ----NKIDIYQLDNASVFREIENPK----RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIAS 257 (362)
T ss_pred ----cEEEEEecccHhHhhhhhccc----cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEE
Confidence 348999988776665554332 45666664 567899999999999999999999999887754 6787774
Q ss_pred --ecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 631 --NKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 631 --s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
.|++.+|++++.||.|++||+...
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999866
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-23 Score=229.76 Aligned_cols=251 Identities=12% Similarity=0.171 Sum_probs=189.1
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCc--------eeEEeccC
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 484 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~s~d~~i~vwd~~~~~--------~~~~~~~~ 484 (1088)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|++||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5667889999987654 34478899999999999997 56 89999999999999998642 34567899
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
...|.+++|+|.. ..++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999997753 2356799999999999999888766664 4568999999999999998865 45699999999
Q ss_pred CceeEEEecccccc--ccEEEEEEeCCCCEEEEEeCCC----cEEEEEcCC-CeeeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 565 GAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
++.+..+.+|.... ..+....|++++.++++++.|+ .|+|||++. ++++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887211 1122334568999999988764 799999985 6677666555443323333344568899
Q ss_pred EEEeCCCcEEEEeCCCCCcccccc-cccCcceeeeecCC
Q 001386 638 AVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 675 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~ 675 (1088)
++|+.|+.|++|++..+.....-. .+..+...+++.|.
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 999999999999998663221111 13345556666653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=200.99 Aligned_cols=251 Identities=20% Similarity=0.330 Sum_probs=208.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC--CCCcEEEEEEeCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~s~d~~i~v 469 (1088)
...|+..|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 567999999988888899999999999999999998877677889999999999999977 677 8999999999999
Q ss_pred EeCCCCce--eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC---ceEEecCCCCceEEEEEccC---C
Q 001386 470 WDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN---G 541 (1088)
Q Consensus 470 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~---g 541 (1088)
|.-.+|+- .+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99877743 4566789999999999999999999999999999999988762 23455677788999999986 5
Q ss_pred -----------CEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCC----CEEEEEeCCCcEEE
Q 001386 542 -----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIKI 604 (1088)
Q Consensus 542 -----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~i 604 (1088)
+.|++++. +..|.||+...++ ..+++.+|. +.|+.++|.|.- .+++++++||++.|
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 56888876 5569999988753 445577777 999999999974 57999999999999
Q ss_pred EEcCCC--eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 605 WDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 605 wd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
|..... ....++ .+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 238 wt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 987632 111111 11223458899999999999999999999999765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-21 Score=214.58 Aligned_cols=516 Identities=16% Similarity=0.168 Sum_probs=328.1
Q ss_pred cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCc-eEEEEEecCCeEEEEECC
Q 001386 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD 517 (1088)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 517 (1088)
+-...-....|++|++. ++.. .+..|.||...+|.++..+.+|..++..+.+.+.... .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k~--l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKF--LFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCcE--EEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33333345579999994 4433 3668999999999999999999999999999877654 678899999999999999
Q ss_pred CCCceEEecCCCCceEEEEEcc---CCCEEEEEeeCCCCceeEEEEeCCCCceeE-----EEecccc----ccccEEEEE
Q 001386 518 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIKR-----TYQGLQL----QHNSVSVVH 585 (1088)
Q Consensus 518 ~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-----~~~~~~~----~~~~v~~~~ 585 (1088)
.......+..... +..+.+.| +-...+..+. +....+............ ++..+.. ....-.++.
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 8887777665443 22333222 1111221111 001111111111111111 1111110 001135677
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE-e-CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 001386 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1088)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 663 (1088)
+++.|.+....- +..+.+|...++...... . ...+...+++.+++|+++++|++..||.|.+|.--.. ...
T Consensus 168 ~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~~~ 240 (792)
T KOG1963|consen 168 DNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------SDD 240 (792)
T ss_pred EcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------ccc
Confidence 777776665554 456888988775511111 0 0122234789999999999999999999999975421 000
Q ss_pred cCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEe
Q 001386 664 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 743 (1088)
Q Consensus 664 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 743 (1088)
.... ++--| |...|.+++|+
T Consensus 241 ~~t~-----------------------------------------t~lHW-------------------H~~~V~~L~fS 260 (792)
T KOG1963|consen 241 SETC-----------------------------------------TLLHW-------------------HHDEVNSLSFS 260 (792)
T ss_pred cccc-----------------------------------------eEEEe-------------------cccccceeEEe
Confidence 0000 11112 55789999999
Q ss_pred cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEE
Q 001386 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVIS 822 (1088)
Q Consensus 744 ~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~ 822 (1088)
++|.+|++|+.+|.+.+|.+.+++. .+ +|. -..+|..+.+|||+.+.+... |+.|.
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~k------------------qf---LPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGKK------------------QF---LPR--LGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred cCCceEeecccceEEEEEeecCCCc------------------cc---ccc--cCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 9999999999999999998766543 11 111 577899999999999887775 99999
Q ss_pred EEEcCCceeEEEecCC-----------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-----------c
Q 001386 823 LYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----------G 880 (1088)
Q Consensus 823 iwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~-----------~ 880 (1088)
+....+.+...++.+. .+-.+.++++| .-+.++..+..|.|.+||+-+.+.+..+. .
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 9988766655554432 23357789999 67788888899999999998876554442 1
Q ss_pred ccCCeeEEEECCCCCEEEEEeC--------CC--cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC-EEEE
Q 001386 881 HSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT-RFLL 949 (1088)
Q Consensus 881 h~~~V~~l~~s~dg~~las~s~--------Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~-~l~~ 949 (1088)
+.-.+++++.+-.|.+++|.-. || .+++|-...........-.....|.. ..+..+.+++-.. .+++
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTRSVRCVT 474 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcccceeEE
Confidence 2335788888889999998742 33 47889887654333222222222322 1233344444333 5666
Q ss_pred -EeCCeEEEEEcCcceeee---------eeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC-CceEEEecccccc
Q 001386 950 -VHETHLAIYEAEELTCLK---------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRILSTAYL 1018 (1088)
Q Consensus 950 -~~d~~i~vwd~~~~~~~~---------~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~ 1018 (1088)
+.|+.+++|-+...+-+. ..-..|..++++++||.||..|+ .+.|++|.+||..+ .++.+......+.
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~~~ 553 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRNWP 553 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccccc
Confidence 689999999884332221 11223688999999999997666 55788999999999 5665554422221
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 001386 1019 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1063 (1088)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~ 1063 (1088)
... . ...+-.+.+ ..+.....+.+.+|++.....-|
T Consensus 554 ~~~-----~--~~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 554 IAE-----L--LFTAQTQND--GALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred hHh-----H--hhhcccccc--cceeeccCceEehHhhhhhheec
Confidence 111 1 111222322 33445567899999999988888
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=221.82 Aligned_cols=239 Identities=17% Similarity=0.260 Sum_probs=202.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEE-EEecCCCCcEEEEEEeCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~-~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
+.+|...|..+++.+ +..++++|.||++++|+-..++.+.. ..+.+|.+-|.. ++|.+..+. .+++|+.|++|.+|
T Consensus 10 l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCc-ceEeecccceEEEE
Confidence 889999999999775 45889999999999999877664442 357778888877 888763332 59999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
...+..++..+.+|...|+++.. ..++ .+++||.|.++++| ..++....+.+|...|++++.-|++ .+++|+.
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~--~~~~-~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa- 159 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSI--GEDG-TLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSA- 159 (745)
T ss_pred ecCCCCchhhhhccccceeeeec--CCcC-ceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccC-
Confidence 99999999999999999999975 3343 49999999999999 4556666789999999999999988 6677765
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
+..|++|.- ++.++++.+|. +.|+.+++-++ ..+++++.||.|++|++ +|+.+....+|. ..++++..
T Consensus 160 ---DKtIklWk~--~~~l~tf~gHt---D~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ght--n~vYsis~ 227 (745)
T KOG0301|consen 160 ---DKTIKLWKG--GTLLKTFSGHT---DCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHT--NFVYSISM 227 (745)
T ss_pred ---cceeeeccC--Cchhhhhccch---hheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccc--eEEEEEEe
Confidence 556999986 88899999998 99999999886 46899999999999999 778888777664 46899998
Q ss_pred ecCCCEEEEEeCCCcEEEEeCC
Q 001386 631 NKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
..++..+++++.|++++||+..
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC
Confidence 8888999999999999999876
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=192.65 Aligned_cols=321 Identities=12% Similarity=0.188 Sum_probs=234.1
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~ 409 (1088)
.-|.+.|+++.+.|...+++.+|+.||.|.+||+++.......-+ +-+ ..|. ..+..-.+|.-.|..+.|-| |..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence 467789999999997666899999999999999987542110000 000 0121 12223567999999999999 888
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCC-cEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
.+.+++.|.+++|||+++-+... .+ ...+.|.+-++||-.. .-++++|..|-.|++.|+.+|.+.+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 99999999999999999865433 23 2456788888888543 3367788888899999999999999999999999
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
.++.|+|..+ ..|++|+.||.|++||++... +..++.|...++..
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRras----------------------------------gcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRAS----------------------------------GCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeeccc----------------------------------ceeEEeecccCccC
Confidence 9999988744 689999999999999997421 12444454444433
Q ss_pred EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE---ecCCCEEEEEeCCCc
Q 001386 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF---NKNGTLLAVIANENR 645 (1088)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~---s~~~~~l~~~~~dg~ 645 (1088)
..++....|.+.++.++|..++.++++.+.|..+++|+..+|+....-.+.-....-...++ +.+...++..-.++.
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGS 316 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCe
Confidence 33433334458999999999999999999999999999998764322111100000111111 334445555556789
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
+.++++-++..+..+..|...+.+.++. ++-....++..|+.+..|-..
T Consensus 317 lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 317 LALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 9999999999999999987778777765 556677888888998888753
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=208.88 Aligned_cols=242 Identities=17% Similarity=0.189 Sum_probs=197.3
Q ss_pred eeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc
Q 001386 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 376 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 455 (1088)
.+|.+.++....+..++ .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||.
T Consensus 64 ~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs- 136 (476)
T KOG0646|consen 64 HVWEILKKDQVVQYIVL---PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS- 136 (476)
T ss_pred cccccCchhhhhhhccc---ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc-
Confidence 45555555544433333 3589999999999999999999999999999998777 6789999999999999999
Q ss_pred EEEEEEeCCCcEEEEeCC---------CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec
Q 001386 456 ISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1088)
+++|||.||.|.+|++. +-++++.|..|.-+|+++...+.+-..+++++|.|.++++||+..+.....+.
T Consensus 137 -~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 137 -HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred -EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 89999999999999753 34677899999999999998766556799999999999999999887776665
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC----------------CceeEEEeccccccccEEEEEEeCCC
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
.+ ..+.+++.+|-++.+++|+. ++.|.+.++.. +..+..+.||.. ...|+|++.+-||
T Consensus 216 fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-~~~ITcLais~Dg 289 (476)
T KOG0646|consen 216 FP-SSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-ESAITCLAISTDG 289 (476)
T ss_pred cC-CcceeEEEcccccEEEecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccC-CcceeEEEEecCc
Confidence 44 47889999999999999976 45577665432 234555667761 1399999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
..|++|+.||+|+|||+.+.++++++... ..+|+.+.+.|-
T Consensus 290 tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 290 TLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred cEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 99999999999999999999999888732 335888888664
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=195.60 Aligned_cols=299 Identities=15% Similarity=0.196 Sum_probs=224.8
Q ss_pred CCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeE
Q 001386 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1088)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 400 (1088)
++|..+..+|.... -.|+.||+.|. +||+|..||.|.|||+.|...-+. +.+|..+|.
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 56777778886443 78999999998 799999999999999999875544 888999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 401 ~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
+++||+||++|+++|.|..|.+||+..|.+++.+ ...++|+.+.|.|..++..+++ -.+..-.+-++..++.. .
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~-~ 143 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHS-V 143 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEE-EecCCcEEEEecCCcee-e
Confidence 9999999999999999999999999999877643 2567999999999887744444 33444455555442211 1
Q ss_pred ec-cCCccEEEE--eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 481 FE-GHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 481 ~~-~~~~~v~~~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
+. ...+..+.. +-...+.|+++++|...|.+.++|..+.+++..+.... ..|..+.|+..|+.++..+. +..
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 11 111111111 11235678899999999999999999998888777666 68999999999999999875 667
Q ss_pred EEEEeCCCC-------ce--eEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCc
Q 001386 557 LVEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1088)
Q Consensus 557 i~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1088)
|+.|+.+.- +. .+.++..- .+-.-.+++|+.+|.++++++ ....++||....|.+++.+.+..+. ...
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~ 297 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELL 297 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-hee
Confidence 999987621 11 11111110 123456789999999998876 4567999999999999999876542 467
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
.+.|+|-...+++. ..|.+++|.....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeecc
Confidence 88999988777777 6789999987643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=212.07 Aligned_cols=287 Identities=14% Similarity=0.183 Sum_probs=228.5
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.|..-|.++++|...+ .+.||+. |-|+|||+....... ++ ...-.....+.|+++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--Pv------------sqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--PV------------SQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--cc------------ccccccCcccceeeeEecCCCceE
Confidence 5666788899998888 5788877 889999997542111 00 000012245789999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|.||...+.||
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 9999999999999987542 22223444445677899999999 88999999999999999999999999999999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
.+ ++||..|-+|+-|.+||.||++.+........ ...|.++..+|++.++++|-. ++.+.+.... +.....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence 88 66889999999999999999998776554332 347889999999999999975 3346666543 3333444
Q ss_pred eccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
..|. ..|.++.|.+.|+++++.+.|..+..|...-|..+...+.. ..|.++.+|.|.+++++|+.|....||.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4455 88999999999999999999999999999988887776543 35899999999999999999998888865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-21 Score=210.56 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=202.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE-EEEeCCCcEEEEeCCCCCcccccccccCccee
Q 001386 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1088)
..+++++.|+.|++||+.+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 5678889999999999999998888875432 5779999999876 566778899999877542211000
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1088)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcC
Q 001386 750 FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM 827 (1088)
Q Consensus 750 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~ 827 (1088)
....+..++++|+++.++++. ++.+++||+.
T Consensus 71 -----------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 71 -----------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred -----------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 000123466777777665543 6788999988
Q ss_pred CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEE-eCCCc
Q 001386 828 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-GGDAQ 905 (1088)
Q Consensus 828 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~-s~Dg~ 905 (1088)
+++.+..+.. ...+.+++|+| +++++++++.++ .+.+||..+++.+..+.. ...+.+++|+|+|++|+.+ ..++.
T Consensus 104 ~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 104 TRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred CCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCE
Confidence 8777776652 33467899999 888998888775 577889998877665542 2346789999999988654 46899
Q ss_pred EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE--EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEe
Q 001386 906 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFS 983 (1088)
Q Consensus 906 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs 983 (1088)
|++||+.+++............+ ........++|+||++++++ +.++.+.+||..+++.+.... +...+.+++|+
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~ 257 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFT 257 (300)
T ss_pred EEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEEC
Confidence 99999998754332221111101 00112457899999998655 456789999999988876543 34578899999
Q ss_pred eCCCEEEEEe-CCCcEEEEEcCCCceEEEec
Q 001386 984 CDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 984 ~dg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
|||++|++++ .+|.|.+||+.+++.+.++.
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999998764 68999999999999988886
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=205.69 Aligned_cols=287 Identities=14% Similarity=0.216 Sum_probs=233.3
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC-EEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGV 413 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~las 413 (1088)
+.|++|.|+|.-. +|.+++.|++++||.+.........+ +.--..+|.+.+|.|+|. .+++
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~~ 275 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIFT 275 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEEe
Confidence 4899999999988 89999999999999997553222111 112457899999999999 8899
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCC-CCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
++....++.||+.+.+..+ +..+.++. ..+.....+++++ +|+..+..|.|.+.-..+++.+.+++ -.+.|..++
T Consensus 276 s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred cccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 9999999999999987543 33455554 3567788999999 89999999999999999999998887 567899999
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC-ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC------C
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------G 565 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~------~ 565 (1088)
|+ .+++.|++.+.+|.|.+||++...+...+...+. .-++++.|++|.++|+|+. .+.|.|||..+ .
T Consensus 352 fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 352 FS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTNP 425 (514)
T ss_pred Ee--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCCC
Confidence 85 6778999999999999999999988877766554 4568899999999999975 67799999653 4
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeEEEeCC-CCCCCCceEEEecCCCEEEEEeC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+++..+.... ..|+.+.|+++.+.++.+| .+..+++-.+.+......++.. .....++|++|||.+.++|+|..
T Consensus 426 kPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 426 KPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred Cchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 5555555555 7899999999999998877 4677999988877666655543 23446899999999999999999
Q ss_pred CCcEEEEeCC
Q 001386 643 ENRIKILETP 652 (1088)
Q Consensus 643 dg~i~iwd~~ 652 (1088)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=219.93 Aligned_cols=285 Identities=18% Similarity=0.209 Sum_probs=218.2
Q ss_pred cccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCC
Q 001386 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 811 (1088)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 811 (1088)
.|....+.++|.++|.++++++.||.|++|+....... +.. + . .+...|.+++. ++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------P~t--------i---~----~~g~~v~~ia~--~s~ 67 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE------PET--------I---D----ISGELVSSIAC--YSN 67 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC------Cch--------h---h----ccCceeEEEee--ccc
Confidence 37778899999999999999999999999985443110 000 0 0 03455655555 455
Q ss_pred EEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEE
Q 001386 812 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 890 (1088)
Q Consensus 812 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~ 890 (1088)
.+++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++-+..+......+++|.++|.+|.|
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSY 146 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeE
Confidence 777777 89999999998877656655667899999999 8999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeee
Q 001386 891 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW 969 (1088)
Q Consensus 891 s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~ 969 (1088)
+|.+.+||+.+-||.|++||+.++........-...........+..++|+|+|..+++ +.|+.|.+|+..+++....+
T Consensus 147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 99999999999999999999998764432221111111111245788999999655555 89999999999999988887
Q ss_pred ecCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001386 970 FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1048 (1088)
Q Consensus 970 ~~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d 1048 (1088)
...+ ...+..+.|||+|+|||+++.||.|.|||+++-+. . ...-...+++|.| +.+-+-.-..-
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~-------------~~~~~Vc~~aw~p-~~n~it~~~~~ 291 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H-------------EFKRAVCCEAWKP-NANAITLITAL 291 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c-------------cccceeEEEecCC-CCCeeEEEeec
Confidence 6655 44499999999999999999999999999998221 1 1113356788888 55555545445
Q ss_pred CcEEEEe
Q 001386 1049 GEVYVIE 1055 (1088)
Q Consensus 1049 g~v~~w~ 1055 (1088)
|...+|.
T Consensus 292 g~~~~~~ 298 (933)
T KOG1274|consen 292 GTLGVSP 298 (933)
T ss_pred cccccCh
Confidence 5544443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=203.70 Aligned_cols=289 Identities=15% Similarity=0.224 Sum_probs=223.7
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 001386 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 654 (1088)
.+.|+++.|+|..+.+++++.|++++||.+... ..++.+... ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 368999999999999999999999999988643 344444443 33689999999998 8888888888999998765
Q ss_pred CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccc
Q 001386 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1088)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 734 (1088)
+....-..
T Consensus 291 k~~k~~~~------------------------------------------------------------------------ 298 (514)
T KOG2055|consen 291 KVTKLKPP------------------------------------------------------------------------ 298 (514)
T ss_pred ccccccCC------------------------------------------------------------------------
Confidence 33211000
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
.| . ....+..+.+|+++++|+
T Consensus 299 ----------~g--------------------------------------~-----------e~~~~e~FeVShd~~fia 319 (514)
T KOG2055|consen 299 ----------YG--------------------------------------V-----------EEKSMERFEVSHDSNFIA 319 (514)
T ss_pred ----------CC--------------------------------------c-----------ccchhheeEecCCCCeEE
Confidence 00 0 122345567788888888
Q ss_pred EEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC-CeeEEEECC
Q 001386 815 SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSD 892 (1088)
Q Consensus 815 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~-~V~~l~~s~ 892 (1088)
..+ .|.|.+....+++.+.+++ -.+.|..++|+. +++.|++.+.+|.|++||++...++.++....+ .-++++.|+
T Consensus 320 ~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ 397 (514)
T KOG2055|consen 320 IAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL 397 (514)
T ss_pred EcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC
Confidence 877 7889998888888888887 667899999998 788888888999999999999999988874322 235688889
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcee-eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE---eCCeEEEEEcCcceeeee
Q 001386 893 ALNILVSSGGDAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 893 dg~~las~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~---~d~~i~vwd~~~~~~~~~ 968 (1088)
+|.+||+||..|.|.|||.++.-.. ...++.....-. ..|++++|++|+..||.+ ..+.+++-.+.+......
T Consensus 398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN 474 (514)
T KOG2055|consen 398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN 474 (514)
T ss_pred CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc
Confidence 9999999999999999997752211 122333333222 369999999999999984 456899999988887777
Q ss_pred eecCC--CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 969 WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 969 ~~~~h--~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
|.... -+.|+|++|||.|.++|.|..+|.|.+|.+.
T Consensus 475 fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 475 FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 65432 5789999999999999999999999999874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=208.75 Aligned_cols=265 Identities=15% Similarity=0.218 Sum_probs=211.1
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~ 409 (1088)
-.|.++|..+.+-|....++|+++..+.|.|||...-.-..... ..-.+...+.||...=..++|++ ..-
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~~~~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------GECRPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------ccCCCceEEEeecccccccccccccce
Confidence 46888999999999998899999999999999997643322100 01112234888998888899999 556
Q ss_pred EEEEEeCCCEEEEEEccCCCc----ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC--CCceeEEecc
Q 001386 410 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG 483 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~--~~~~~~~~~~ 483 (1088)
.|++++.|++|++||+..... +.....+.+|+..|..++|++-... ++++++.|+.+.|||++ +.++.+...+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 889999999999999986543 5566678899999999999998877 78999999999999999 5666788899
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
|.+.|++++|.|.. +..||+|+.|++|.+||+++... ...+..|...|..+.|||....+++.+. .++.+.+||+
T Consensus 271 h~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDl 346 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDL 346 (422)
T ss_pred cCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEec
Confidence 99999999998874 67999999999999999998764 6688999999999999997765544432 2667999998
Q ss_pred CCCcee-----------EEEeccccccccEEEEEEeCCCCEEE-EEeCCCcEEEEEcCC
Q 001386 563 SEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNK 609 (1088)
Q Consensus 563 ~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~ 609 (1088)
..-... ..+-.|.+|...|..+.|+|+..+++ +.++|+.+.||.+..
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 742211 11223444458999999999988765 478999999999863
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-21 Score=211.40 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=211.5
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEEccC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~~ 427 (1088)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999999886654 3333 346789999999977 5667889999999998
Q ss_pred CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec
Q 001386 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1088)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1088)
++... .+..+. .+..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.++++ ++++.++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~--~~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAV--SPDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEE--CCCCCEEEEEec
Confidence 87544 343443 3567899999984 345556789999999999888877763 234567777 457778888887
Q ss_pred CC-eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc----ccccEE
Q 001386 508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 582 (1088)
Q Consensus 508 dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 582 (1088)
++ .+.+||.++......... ......++|+|+|+++++++. .++.|.+||..+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 75 567789877655443322 234567899999999876542 255699999999988776653210 011234
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCccccc
Q 001386 583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA 660 (1088)
Q Consensus 583 ~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1088)
.++|+|+++++++ .+.++.+.+||..+++.+..+.... .+.+++|+|+|++|+++. .++.|.+||..+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC---CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998655 4556789999999988876654322 478999999999998864 5899999999999887777
Q ss_pred ccccCcceeeeec
Q 001386 661 GVLSDNLRKLSVN 673 (1088)
Q Consensus 661 ~~~~~~v~~~~~~ 673 (1088)
... ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 643 333555543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=189.02 Aligned_cols=268 Identities=15% Similarity=0.111 Sum_probs=209.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
....|+.+.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 57889999999999999999999999999999875333 336899999999998765 89999999999999998
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++. -.|..|++++. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~--v~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMD--VSGNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEe--ccCCEEEEeec----C
Confidence 8765 445599999999987544 479999999999999998755444444433 666655 45677777765 4
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC----eeeEEEeCCCC-------CC
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 623 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 623 (1088)
..+.+||+++........... -+..++++++.|++.-+++++-||.|.+=.++.. +....++.|.. .-
T Consensus 155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 569999998765433221111 1367899999999999999999999988665554 33344444421 12
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCccee
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
+|++++|+|-...+|+|+.||.|.+||..+.+.+..+......|.+++|+..+..++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 588999999989999999999999999999999999988888899999985554443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-22 Score=187.58 Aligned_cols=305 Identities=14% Similarity=0.172 Sum_probs=220.2
Q ss_pred cccccEEEEEEec-CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-C
Q 001386 732 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-N 809 (1088)
Q Consensus 732 ~~~~~i~~~~~s~-~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d 809 (1088)
.|.+.|+++.+.+ .|+++++|+.||.+.+||++.......... +....|+... ....+|...|..+.|-| |
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l------i~k~~c~v~~-~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL------IAKHKCIVAK-QHENGHKYAISSAIWYPID 113 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc------eeheeeeccc-cCCccceeeeeeeEEeeec
Confidence 4778899998876 588999999999999999986653111100 0111122111 11235888999999998 4
Q ss_pred CCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCee
Q 001386 810 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 886 (1088)
Q Consensus 810 g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~--d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~ 886 (1088)
...+.+++ |.++++||.++.+....|+ -.+.|.+-++||- ...++|+|..|-.|++-|+.+|...+.+.||.+.|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred CceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 45555666 9999999999999888877 4456666666662 135899999999999999999999999999999999
Q ss_pred EEEECCCCCE-EEEEeCCCcEEEEEcCCCc--eee-----eeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEE
Q 001386 887 GLVFSDALNI-LVSSGGDAQIFVWDVDGWG--IQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 957 (1088)
Q Consensus 887 ~l~~s~dg~~-las~s~Dg~i~iwd~~~~~--~~~-----~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~v 957 (1088)
++.|||...+ |++|+.||.|++||+.... ... ....+..+....+.+.+..++|+.||.++++ +.|..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 9999998776 8899999999999997631 100 0111111222333358999999999999999 89999999
Q ss_pred EEcCcceeeeeeec--CCC---cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEE
Q 001386 958 YEAEELTCLKQWFP--ISS---VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1032 (1088)
Q Consensus 958 wd~~~~~~~~~~~~--~h~---~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
|+...|+.....+. .|+ +.-..+. +.+...++.--.++.+.++++-.|..+..+..+ . -...|.
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--------~--k~i~c~ 341 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--------L--KRINCA 341 (397)
T ss_pred eecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--------c--ceeeEE
Confidence 99998875433221 121 1111133 445555555556799999999999999888622 1 233567
Q ss_pred EECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1033 AAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1033 ~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
+|.| +-+...+|..|+.+..|-+
T Consensus 342 ~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 342 AYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecC-chhhhhccccCCccccccc
Confidence 7888 7788999999999999987
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=203.76 Aligned_cols=303 Identities=17% Similarity=0.203 Sum_probs=224.7
Q ss_pred EEeCCC-cEEEEeCCCCceeEEeccCC-ccEEEEeeeeeCCceEEEEEec-CCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 460 TCGDDK-TIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 460 s~s~d~-~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
+++.|. ++.+||+.+|..+.++++.. ..-.++.. - ++.+++++.. -..+.+|.+.............+++.+++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~--l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA--L-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhh--h-chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 344444 59999999999998887652 21111111 1 2245666554 45699998877665554445566899999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-------
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK------- 609 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~------- 609 (1088)
-+|+|.+|+.++.. +.|++|.+.+|.++..+..|- ..|+++.|+.||.+|++||.||.|.+|.+.+
T Consensus 89 s~n~G~~l~ag~i~----g~lYlWelssG~LL~v~~aHY---Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 89 SSNLGYFLLAGTIS----GNLYLWELSSGILLNVLSAHY---QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred cCCCceEEEeeccc----CcEEEEEeccccHHHHHHhhc---cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 99999999998663 449999999999999998887 8999999999999999999999999998642
Q ss_pred --CeeeEEEeCCCCCCCCceEEEecC--CCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccC
Q 001386 610 --VQLLTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1088)
Q Consensus 610 --~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 685 (1088)
-+++..+..| .-.|+.+...+. ..++++++.|.++++||+..+..+..+.
T Consensus 162 ~~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------------------------ 215 (476)
T KOG0646|consen 162 HSVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------------------------ 215 (476)
T ss_pred CCccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------------------------
Confidence 3455555544 335777776654 4578899999999999988764443221
Q ss_pred CceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
....+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus 216 -----------------------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 216 -----------------------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred -----------------------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 234678899999999999999999888766432
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCC--CeE
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TAT 843 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~ 843 (1088)
-.. ....+. .+.++. .+..+..+.+|.+ .|+
T Consensus 249 ~~~----------------------------~~~~v~------------------~k~~~~-~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 249 LSG----------------------------QSAGVN------------------QKGRHE-ENTQINVLVGHENESAIT 281 (476)
T ss_pred CCc----------------------------cccccc------------------cccccc-ccceeeeeccccCCccee
Confidence 111 011111 111111 2455667778887 999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCC
Q 001386 844 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 893 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d 893 (1088)
|++++- ||.+|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-
T Consensus 282 cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 282 CLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred EEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999 8999999999999999999999999988877899999999664
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=188.38 Aligned_cols=254 Identities=16% Similarity=0.208 Sum_probs=204.7
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--C
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--d 407 (1088)
-.+|.+.|..++..--|++ |||++.|++|+|+.+.+..... ....|.||.++|..++|.. -
T Consensus 7 dt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred hhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeeccccc
Confidence 3589999999999989994 8999999999999998765421 1123899999999999987 8
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-c--eeEEeccC
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGH 484 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~--~~~~~~~~ 484 (1088)
|.+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+--+.|++++.||.|.|.+.++. . .......|
T Consensus 70 G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred CcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 999999999999999999988 4455557889999999999999988889999999999999987754 2 22445679
Q ss_pred CccEEEEeeeeeCC-c-----------eEEEEEecCCeEEEEECCCCCc--eEEecCCCCceEEEEEccCC----CEEEE
Q 001386 485 GAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFS 546 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g----~~l~~ 546 (1088)
.-.|+++++.|..- | +.|++|+.|..|+||+.++..- ...+..|...|..++|.|.- .+|++
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 99999999977521 1 5799999999999999987642 33578889999999999965 46788
Q ss_pred EeeCCCCceeEEEEeCCCC--cee-EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 547 CGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
++. ++.+.||-.... ... ..+.... ..+..+.|++.|+.|+.++.|+.|.+|.-.
T Consensus 229 ~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 229 CSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 765 556999976521 111 1222233 689999999999999999999999999754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-21 Score=202.46 Aligned_cols=452 Identities=13% Similarity=0.120 Sum_probs=288.3
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 522 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 522 (1088)
.|..++|-|||.+++++. +..+.+||...|..+.++++|...|+++++ +.||+.+++|+.|..|.+|.-.-....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEeccccccee
Confidence 799999999999744433 346999999999999999999999999999 668899999999999999965433322
Q ss_pred EEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcE
Q 001386 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1088)
Q Consensus 523 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1088)
-..|+..|.||.|+|-...|++++.+. .-+|........+. +. ...+.+++|..||++++.|-.+|+|
T Consensus 89 --kYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K~-ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 89 --KYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSKH-KS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred --eeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHhh-hh----heeEEEeeecCCCcEEEEeccCceE
Confidence 235777999999999999999998542 66787665433221 11 2468899999999999999999999
Q ss_pred EEEEcCCCeeeEEEeCCCCCCCCceEEEecCC-----CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCc
Q 001386 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~ 677 (1088)
.+-+......+..-...+...+|.+++|+|.. ..+++.....++.++.+... .+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence 99876544444444444556789999999953 46777777777777776632 22211111112223333
Q ss_pred ceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccc
Q 001386 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 757 (1088)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 757 (1088)
-++|.++..|+.|+.+.++..+. ...-.... ....|..++..|+++.++.|..||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~G-----vrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDG-----VRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecC-----eEEeeccc--cceeEEEEEEccCCceEEEEEccCe
Confidence 36788888899999888886431 11111111 4568999999999999999999999
Q ss_pred eEEEEccCCCCCCC----------------------------------------------CCCCCcccCCCCCCccee-e
Q 001386 758 HLMWRWPRNDLTLS----------------------------------------------TEVPPRLYQPRHGPQFMV-N 790 (1088)
Q Consensus 758 v~iw~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~-~ 790 (1088)
+..|++-....... ....+.+|...++..... .
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY 366 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHY 366 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchh
Confidence 99998754432110 011111222222210000 0
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEE--EEcCCCCcEEEEEeCCCeEEEEE
Q 001386 791 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL--AFNPHDNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l--~~sp~d~~~lasg~~dg~i~lwd 868 (1088)
...+ .-.....+--+--.+..++.+.+..+..+|...-+. +... -.+-|.-+ .=-|.+..-|+.|..||.|.-.=
T Consensus 367 ~v~e-kI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF 443 (1081)
T KOG1538|consen 367 RVKE-KIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIF 443 (1081)
T ss_pred HHHH-HHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence 0000 000000111111134455556667777777653211 1000 00001101 11122556788899898765433
Q ss_pred cCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 869 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 869 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
+.+.-++.. ......|.|+..+...+.||+..+.++..++|+.+++. .++.+ .+.+++|+....-++
T Consensus 444 ~dN~~PiLl-~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT~~E~Ml 510 (1081)
T KOG1538|consen 444 VDNLFPILL-LKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNTQCEDML 510 (1081)
T ss_pred ecCCchhhe-ecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeeccccceE
Confidence 444333322 22456799999999999999999999999999999652 22222 477899988765555
Q ss_pred E-EeCCeEEE
Q 001386 949 L-VHETHLAI 957 (1088)
Q Consensus 949 ~-~~d~~i~v 957 (1088)
+ +..|.+.|
T Consensus 511 cfT~~g~L~V 520 (1081)
T KOG1538|consen 511 CFTGGGYLNV 520 (1081)
T ss_pred EEecCCceEE
Confidence 4 55565544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=204.73 Aligned_cols=273 Identities=13% Similarity=0.106 Sum_probs=216.8
Q ss_pred CCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCC
Q 001386 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVP 775 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 775 (1088)
...+.+.+|+. |.|+|||+..... +.-.-.++......-|+++...|||+.|++|+.-.++.|||+......
T Consensus 429 ~~trhVyTgGk-gcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr------ 500 (705)
T KOG0639|consen 429 NPTRHVYTGGK-GCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR------ 500 (705)
T ss_pred CCcceeEecCC-CeEEEeeccCCCC-CCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc------
Confidence 44556667665 8899999764321 111222233335678999999999999999999999999998765431
Q ss_pred CcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcE
Q 001386 776 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 854 (1088)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 854 (1088)
...+++ ...-...+++++||.++.+++. ||.|.|||+.+...++.|++|.+.+.|+.+++ ||..
T Consensus 501 ------------ikaelt--ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtk 565 (705)
T KOG0639|consen 501 ------------IKAELT--SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTK 565 (705)
T ss_pred ------------hhhhcC--CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCce
Confidence 111111 1234556789999999877775 99999999999999999999999999999999 8999
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCC
Q 001386 855 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
|-+|+-|.+|+-||+++++.+.... ..+.|.++..+|.+.+|+.|-+++.+.|-.....++. .+.. |. .-
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky---qlhl---he---Sc 635 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY---QLHL---HE---SC 635 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce---eecc---cc---cE
Confidence 9999999999999999988765544 4577999999999999999999998888777664321 1111 22 25
Q ss_pred eEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 935 ETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|.++.|++-|+++++ |.|+-+..|.+.-|..+.+.. ..+.|.++..|.|.++++||+.|....||.+
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 899999999999998 899999999999888776643 3789999999999999999999998888875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=198.15 Aligned_cols=305 Identities=17% Similarity=0.195 Sum_probs=229.6
Q ss_pred hheeecccCCCCceeeeecCCCC-eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+...-|...|++++|+|... .++|+|+..|.|-+||+.+.+...... .++..|.++|.++.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~ 241 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK 241 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence 34455567888999999999876 799999999999999997544333211 23788999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEe
Q 001386 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF 481 (1088)
Q Consensus 404 ~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~-~~~~ 481 (1088)
|+| +-..+.+.|.||+|++-|++++.. ..+..+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence 999 667888999999999999997642 22223333445678889998888 577777777999999998655 5667
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce----EEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
.-|...|++++++|... .++++++.|++++|||++..... .....|...|.+..|||.+-.|++.+. +..|
T Consensus 319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I 393 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI 393 (498)
T ss_pred hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence 77888999999988744 79999999999999999865433 445667889999999998888888765 5569
Q ss_pred EEEeCC----CCceeEEEeccccccc--cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+|||.. .-.....+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..........-..|+
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 999983 3333333332221112 2345689999999999999999999999999988776544332222346799
Q ss_pred cCCC-EEEEEeCCCcEEEEeCC
Q 001386 632 KNGT-LLAVIANENRIKILETP 652 (1088)
Q Consensus 632 ~~~~-~l~~~~~dg~i~iwd~~ 652 (1088)
|-+. +++.++..|.|+||...
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeccCCccceEEEEecC
Confidence 9777 55555567889988654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=188.70 Aligned_cols=264 Identities=15% Similarity=0.237 Sum_probs=203.7
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
-.|+.||+.|.+||+|+.||.|.|||+.|-..-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6889999999999999999 8999999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC----ceEEEEEccCCCEEEEEeeCCCCc
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+.+. ...+|+.+.|+|......+++--... -.+-++.............+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 77899999999987766666544333 33444443222221111111 1223468999999999865 6
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-------eee--EEEeCCCCCCCC
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 625 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 625 (1088)
|.+.++|..+-+++..++-.. ...|..+.++..|.+++.-+.|..||.|++..- ++. +.+..--+...-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 779999999999888877544 367899999999999999999999999998631 111 111100111234
Q ss_pred ceEEEecCCCEEEEEeC-CCcEEEEeCCCCCccccccccc-CcceeeeecCC
Q 001386 626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPI 675 (1088)
Q Consensus 626 ~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~ 675 (1088)
.+++|+.+|.+++.++. ...++||....|..++.+.+.. +....+.++|.
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 68999999999988775 4689999999999999998877 56666777754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=198.44 Aligned_cols=274 Identities=14% Similarity=0.152 Sum_probs=204.4
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|..++|-|||..+++.++ ..+.|||++.|..+.+ +++|...|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 8999999999997666554 7899999999998876 899999999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
.|..|.+|+-.-...++ ..|...|.|+.|+|-.. .+++++-. ..-+|..+..... .|...+..++.++
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999876543222 26999999999999988 68888754 4678986654432 2333333333344
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecC---CCCceEEEEEccCCC-----EEEEEeeCCCCceeEEEEeCCCCce
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~g~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
..||++++.|-.+|+|.+-+- +++....+.. .+.+|.+++|+|... .+++.-. ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 789999999999999998853 3444444433 556899999999643 2333211 122333332 2333
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
+..-+... ....|+.+.++|.+++.|+.|+.+.+|.. .|-.+.++.... ..|+.++..|+++.++.|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeee
Confidence 33222222 45678899999999999999999999975 566666665433 3689999999999999999999999
Q ss_pred EEeCCCC
Q 001386 648 ILETPES 654 (1088)
Q Consensus 648 iwd~~~~ 654 (1088)
.|++...
T Consensus 289 CyNl~fS 295 (1081)
T KOG1538|consen 289 CYNLIFS 295 (1081)
T ss_pred hhhhHHh
Confidence 9987643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-23 Score=219.48 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=212.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 34488999999987789999999999999999987654444 5889999999999999988 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+...+...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999865 5679999999999999999999999999999989999999999999999875
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+..+.+||...|+....|.+|. +.+.++.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 5679999999999999999998 89999999999888889999999999999998888777654 4579999999
Q ss_pred cCCCEEEEEeCC
Q 001386 632 KNGTLLAVIANE 643 (1088)
Q Consensus 632 ~~~~~l~~~~~d 643 (1088)
|++..+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999999888765
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=202.35 Aligned_cols=323 Identities=12% Similarity=0.156 Sum_probs=244.2
Q ss_pred cccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC
Q 001386 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1088)
Q Consensus 317 ~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 396 (1088)
.....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++.. -.
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d 441 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FD 441 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ec
Confidence 3445567888999999999999999999998 79999999999999999999998644 34
Q ss_pred CCeEEEEECCCCC--EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEE----EeCCCcEEEE
Q 001386 397 VSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT----CGDDKTIKVW 470 (1088)
Q Consensus 397 ~~V~~l~~s~dg~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s----~s~d~~i~vw 470 (1088)
+.|.|++|+|.++ .||++-... +.|-+..-|..+.. +.+ .. .+++ ...|+.+..|
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t-----------~e--ll~~~~~~~~p~~~~~~W 502 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPT-----------KE--LLASAPNESEPDAAVVTW 502 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cch-----------hh--hhhcCCCccCCcccceee
Confidence 5899999999665 455554443 66666555532211 000 00 1111 2235577788
Q ss_pred eCCCC----ceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 471 DAVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 471 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
.-... .-++..-.|...|..+.||. .|.+|++...+ ..|.|.++.....+..+....+.+.++.|+|...+
T Consensus 503 ~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 503 SRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred chhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence 64421 11344556899999999975 55699887664 46899999888777777778889999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-eeeEEEeCCCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGL 622 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~ 622 (1088)
|++++ ...|++||+..+..++.+.... ..|..++.+|.|..++.++.|+.+..+|+.-. ++.+++..|..
T Consensus 581 lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~- 651 (733)
T KOG0650|consen 581 LFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK- 651 (733)
T ss_pred EEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-
Confidence 99887 4459999999888887776655 68999999999999999999999999999754 56677776644
Q ss_pred CCCceEEEecCCCEEEEEeCCCcEEEEeCC------CC---CcccccccccCc----ceeeeecCCCcceeccccCCcee
Q 001386 623 PENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVS 689 (1088)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~~p~~~~~~~~~~~~~~~ 689 (1088)
.+.+|+|++.-.++++|+.||++.|+--. .+ -++..+++|... |..+.|+
T Consensus 652 -avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH---------------- 714 (733)
T KOG0650|consen 652 -AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH---------------- 714 (733)
T ss_pred -hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc----------------
Confidence 68999999999999999999999987432 11 233445555543 4444455
Q ss_pred ecCCCCCCCCcccccccCccceec
Q 001386 690 VNEDPKEDVKPEISVEAENKSEVE 713 (1088)
Q Consensus 690 ~~~~~~~~~~~l~~~~~d~~i~vw 713 (1088)
|...++++++.|++|++|
T Consensus 715 ------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 ------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------CCCceEEecCCCceEEee
Confidence 668889999999999998
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=195.81 Aligned_cols=253 Identities=19% Similarity=0.320 Sum_probs=202.2
Q ss_pred ecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc-------cceeEeccCCCCEEEEEecCCCCcEEEEEEeC
Q 001386 392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~ 463 (1088)
.-.|.+.|+.+..-| +...+|+.+..+.|.|||...-... ++-..+.+|...-..++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 345899999999999 4566777788899999999754322 233368899998888999998776 7999999
Q ss_pred CCcEEEEeCCCCc-------eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC--CCCceEEecCCCCceEE
Q 001386 464 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 534 (1088)
Q Consensus 464 d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~ 534 (1088)
|++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987532 2467889999999999998754 689999999999999999 55666778889999999
Q ss_pred EEEccCCCE-EEEEeeCCCCceeEEEEeCCCC-ceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCe
Q 001386 535 MAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 535 ~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++|+|-+.. ||+++. +++|.+||+++. +.+.++.+|. ..|..+.|+|+. ..+++++.|+.+.+||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 999996655 555544 666999999864 4677888888 999999999986 456678899999999987522
Q ss_pred ee------------EEEeCCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeCCC
Q 001386 612 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 653 (1088)
Q Consensus 612 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~ 653 (1088)
.. -.+...++...|..+.|+|+.. .+++.+.|+.+.||+...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 11 1244445666799999999655 577888999999999874
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=195.48 Aligned_cols=321 Identities=15% Similarity=0.230 Sum_probs=242.0
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC--EEEEEeCCCc
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENR 645 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~ 645 (1088)
-..+.||. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.|++|+|.+. .||++....
T Consensus 393 ~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 393 ALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCc-
Confidence 34567777 999999999999999999999999999999999999998765 489999999664 455555444
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc----cccCccceeccccccC--
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS----VEAENKSEVEKPLFAR-- 719 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~d~~i~vw~~~~~~-- 719 (1088)
+.|.+..-|..+..-. ....+++ ...+..+-.|.-...+
T Consensus 466 ~~ivnp~~G~~~e~~~-----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~ 510 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGP-----------------------------------TKELLASAPNESEPDAAVVTWSRASLDEL 510 (733)
T ss_pred eEEeCccccchhhhcc-----------------------------------hhhhhhcCCCccCCcccceeechhhhhhh
Confidence 6666555442211100 0111111 1223456677744222
Q ss_pred -CCcceeeecCCccccccEEEEEEecCCceEEEeccc---cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC
Q 001386 720 -PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS 795 (1088)
Q Consensus 720 -~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1088)
.+.+..+. |...|..+.|...|.+|++...+ ..|.|+++..... + ..+.
T Consensus 511 ~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------------------Q--~PF~-- 563 (733)
T KOG0650|consen 511 EKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------------------Q--SPFR-- 563 (733)
T ss_pred ccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc------------------c--Cchh--
Confidence 22233333 67799999999999999887663 5677777654432 1 1111
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-ee
Q 001386 796 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV 874 (1088)
Q Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~-~~ 874 (1088)
-..+.|.++.|+|...++++++...|+|||+..++.+..+......|..++++| +|.-|+.|+.|+.+..||+.-+ +.
T Consensus 564 kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKP 642 (733)
T ss_pred hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcch
Confidence 256788999999999999999999999999999888888888888999999999 8888999999999999999754 67
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC--C--ceeeeeeeecCCCCccC-CCCeEEEEEcCCCCEEEE
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG--W--GIQTCRSLQTPDGVMTL-APSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~--~--~~~~~~~~~~~~~~~~~-~~~v~~~~fs~dg~~l~~ 949 (1088)
.+++.-|...|++|+|++.-.++++|+.||++.|+--.- . +......++.+.+|... ...|..+.|+|..-+|.+
T Consensus 643 yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 643 YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEe
Confidence 788899999999999999999999999999999885321 1 11124456677777542 235889999999999999
Q ss_pred -EeCCeEEEE
Q 001386 950 -VHETHLAIY 958 (1088)
Q Consensus 950 -~~d~~i~vw 958 (1088)
|.|++|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 789999998
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=205.93 Aligned_cols=237 Identities=17% Similarity=0.230 Sum_probs=195.1
Q ss_pred CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC-CCEEEEEe-CCcEE
Q 001386 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-GGVIS 822 (1088)
Q Consensus 745 ~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~-dg~i~ 822 (1088)
+.++|++++.+|.|.+||+..... ...+.. +. .|...+.++.|++- ..+|++|+ ||+|+
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~r---------------nk~l~~--f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK 159 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIR---------------NKLLTV--FN--EHERSANKLDFHSTEPNILISGSQDGTVK 159 (839)
T ss_pred hhhhheeecCCCcEEEEecCcccc---------------chhhhH--hh--hhccceeeeeeccCCccEEEecCCCceEE
Confidence 456788899999999999875311 000111 11 38999999999984 56777887 99999
Q ss_pred EEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeeccccCCeeEEEECCCCCEEEEEe
Q 001386 823 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 823 iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~las~s 901 (1088)
+||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|+|++.+|||||
T Consensus 160 ~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 160 CWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred EEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC
Confidence 99999999999999988999999999988899999999999999999864 56778899999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE----EeCCeEEEEEcCcceeeeeeecCCCcCE
Q 001386 902 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCLKQWFPISSVPI 977 (1088)
Q Consensus 902 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~----~~d~~i~vwd~~~~~~~~~~~~~h~~~v 977 (1088)
.|++|+|||+.+++.....++.... ++..++|-|+..+.++ ..|..|+|||++..-.....+..|...+
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTia-------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v 312 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIA-------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV 312 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecc-------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence 9999999999987655555555443 5899999999876554 2678899999998777777778899999
Q ss_pred EEEEEee-CCCEEEEEeCCCcEEEEEcCCCc
Q 001386 978 SQATFSC-DCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 978 ~~l~fs~-dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
+.++|-. |-..+.+++.||+|..-.+.++.
T Consensus 313 t~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 313 TGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 9999965 55678899999998776655553
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-21 Score=209.66 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=214.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+....|+..|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 45567888999999866666 899999999999998876554433 7889999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
..+|++|+.+|+|++||++.++.++ +|.+|...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999998777 7889999999999999999 7899999999999999999999999999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
|..+.| .++|.++++++.|..+++||+..++....+..|...+.++.|+|..-.++.|+. +.++++||+++.+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 568899999999999999999999999999999999999999999999998876 56699999999888
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCC
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1088)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87777666 8899999999999988876543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=193.42 Aligned_cols=289 Identities=16% Similarity=0.138 Sum_probs=205.1
Q ss_pred CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEE
Q 001386 746 GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLY 824 (1088)
Q Consensus 746 g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iw 824 (1088)
...|+.+..+|.|.+++....... ++ ++.+. ....|...|..+.+-|....|++++ |.++++|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr-----------~e--e~~lk---~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR-----------LE--ERQLK---KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc-----------hh--hhhhc---ccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 345677778999999986543221 01 11011 1124999999999999667778776 8899999
Q ss_pred EcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce---------------------------ee
Q 001386 825 IVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------------------------VI 875 (1088)
Q Consensus 825 d~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~---------------------------~~ 875 (1088)
|+++.+++.. +.+|.+.+.+++|.|.|...+++|+.||.|.|||++-.. .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999998877 889999999999999888999999999999999986321 11
Q ss_pred eeeccccCCeeE---EEECCCCCEEEEEeC-CCcEEEEEcCCCceee-eeeeecC--CCCccCCCCeEEEEEcCCCCEEE
Q 001386 876 SKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQT-CRSLQTP--DGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 876 ~~l~~h~~~V~~---l~~s~dg~~las~s~-Dg~i~iwd~~~~~~~~-~~~~~~~--~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
....+|.+.|.+ +.+..|...||++|. |+.|+|||+....... ....... ..+......+.++.....|.+|.
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 223445566666 666678899999987 9999999998743211 1111111 11111123577788888888888
Q ss_pred E-EeCCeEEEEEcCcceee-eeeecCCC--cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCcc
Q 001386 949 L-VHETHLAIYEAEELTCL-KQWFPISS--VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1024 (1088)
Q Consensus 949 ~-~~d~~i~vwd~~~~~~~-~~~~~~h~--~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1024 (1088)
+ +.|+.|+.|++.+...- ...+.++. .--..-..|||+.+|++|+.|...++|.+.+.+.-.... . +
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~-----G 358 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----L-----G 358 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----h-----C
Confidence 7 79999999999865432 11222331 111233579999999999999999999999887543332 1 2
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1025 ~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
+.+...+++|.|.+-.-++++++|.++.+|++...
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 33556778888866667888999999999999553
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=194.00 Aligned_cols=291 Identities=16% Similarity=0.203 Sum_probs=208.7
Q ss_pred eeec--CCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 001386 340 MDFH--PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1088)
Q Consensus 340 v~~s--pdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d 417 (1088)
+.|+ |+.+++||.+..||.|.++|.....-.. +.+. ......|.+.|..++|-|-...|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~---------ee~~----lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL---------EERQ----LKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcch---------hhhh----hcccccccceeEeeccCCCceeEEEccCC
Confidence 4454 4556799999999999999987653220 0010 01145699999999999977789999999
Q ss_pred CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--------------------e
Q 001386 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--------------------R 477 (1088)
Q Consensus 418 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~--------------------~ 477 (1088)
.++++||++++++.... .+.||.+.|.+++|.|++.. .+++|+.||.|.|||++-.. .
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998876643 47799999999999999887 89999999999999985321 0
Q ss_pred -------eEEeccCCccEEE---EeeeeeCCceEEEEEec-CCeEEEEECCCCCceE--------EecCC---CCceEEE
Q 001386 478 -------TYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARV--------DYDAP---GLGCTRM 535 (1088)
Q Consensus 478 -------~~~~~~~~~~v~~---~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~--------~~~~~---~~~v~~~ 535 (1088)
+.....+...|.+ +.+ ..|...|++++. |+.|++||++...... .+..+ ...+.++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CchhhccccccccccCceeeeeEEEE--EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 1111223334433 222 235568888887 9999999998755432 22222 2367888
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCC--ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1088)
.....|.+|++.+. ++.|+.||+.+- ..+..+.++..... -..-..+|++.++++|+.|...++|.+.+.+.-
T Consensus 278 ~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf-~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 278 ILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSF-YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCccccee-eeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 88888999888775 556999998754 33445555441111 222357899999999999999999999875533
Q ss_pred E-EEeCCCCCCCCceEEEecC-CCEEEEEeCCCcEEEEeCCCC
Q 001386 614 T-TIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 614 ~-~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
. .+.+ +...|.+++|.|. -.-++++++|..+++|++..+
T Consensus 353 ~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 2 3333 3446899999883 345677799999999999654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=176.18 Aligned_cols=295 Identities=15% Similarity=0.260 Sum_probs=213.9
Q ss_pred eecccCCCCceeeeecC----CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~sp----dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
+.+++|+.+|..++|.+ +...++|+.+. ..+.||......-+.. ++...-.+|......++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence 45678988999999984 33346666554 6788888865432211 12222345888899999
Q ss_pred ECCCC----CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 404 ~s~dg----~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
|+-|. -+||+|+.-|.|+|.|+.++++.+ .+.+|...|+.+.|.|+..+ +++++|.|.+|++||++++.|+.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 98753 478999999999999999998776 68899999999999999987 79999999999999999999998
Q ss_pred Ee---ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE------e----------------------cCC
Q 001386 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------Y----------------------DAP 528 (1088)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~----------------------~~~ 528 (1088)
.| .+|.+.|.++.|+ .+|.++++++.|..+++|++...+.... + ..|
T Consensus 173 VfGG~egHrdeVLSvD~~--~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFS--LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEc--CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 6799999999995 4667999999999999999974321110 0 011
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC-CCCce-------------eEEEeccccccccEEEEE--EeCCCCE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVVH--FDTAKDQ 592 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~~~--~~~~~~~ 592 (1088)
...|.|+.|- |.++++-+. ++.|..|.. +-++. +..+.-. ...+.-+. |.|-++.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHH
Confidence 1122222222 355555432 556999987 22221 1222222 24555554 4566889
Q ss_pred EEEEeCCCcEEEEEcCCCeee--EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 593 ILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
|+.|.+.|.|.+||++...+. .++..+.....|...+|+.||.+|+..++|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999876552 333333444568999999999999999999999999854
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=172.33 Aligned_cols=257 Identities=13% Similarity=0.179 Sum_probs=190.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~ 468 (1088)
-.+|..-|.++.|.+-|+++|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 56799999999999999999999999999999965432 23444467899999999999764 56 899999999999
Q ss_pred EEeCCC------C---ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE------Eec-------
Q 001386 469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 526 (1088)
Q Consensus 469 vwd~~~------~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~------- 526 (1088)
||.-.. | ....++......|+.+.|.|..-|-.+++++.||.+|||+.-..-... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123566778899999999999999999999999999999764332211 111
Q ss_pred CCCCceEEEEEccC---CCEEEEEeeCC-CCceeEEEEeCCCC--c--eeEEEeccccccccEEEEEEeCCC----CEEE
Q 001386 527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 594 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~---g~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 594 (1088)
.+..+..|+.|+|. ..+|++++.+. ...+.++||....+ + .+..+.+|. .+|+.++|.|+- ..++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23446789999873 35677776431 11234666654432 2 334455555 999999999973 5688
Q ss_pred EEeCCCcEEEEEcCCCe-----------------eeEEEe-CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+++.|| |+||++.... .+..+. ...+...|..+.|+-.|..|++.++||.|++|...-.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 899999 9999987311 112222 2244557999999999999999999999999987643
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=181.25 Aligned_cols=306 Identities=15% Similarity=0.160 Sum_probs=218.1
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
++.|+ +|..+.|.+++.-.+|+|+.|..|+||.++.+..-... ...-....|..|...|+++.|+|+|.
T Consensus 10 wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 10 WHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred ecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcC
Confidence 34565 99999999988756999999999999999876543210 00111234888999999999999999
Q ss_pred EEEEEeCCCEEEEEEcc--------C-----CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 410 LLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
.||+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|..+++||+..|.
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccce
Confidence 99999999999999876 3 111223446789999999999999999 89999999999999999999
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-------------------CCC----CceE
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGCT 533 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~v~ 533 (1088)
.+..+.+|...+..++|.| -++++++-+.|...+.+.+...+...... .|. .-..
T Consensus 157 l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999999999999955 55789998888876666654433221110 011 1235
Q ss_pred EEEEccCCCEEEEEeeCCCC-----ceeEEEEeCCC-CceeEEEeccccccccEEEEEEeC------------------C
Q 001386 534 RMAYSANGRRLFSCGTSKEG-----ESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------A 589 (1088)
Q Consensus 534 ~~~~s~~g~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~------------------~ 589 (1088)
.++|+|||..+++...--+- .+..++++-.. .++...+.+.. .....+.|+| -
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEecccccccccccccc
Confidence 67899999999875431110 22344554331 12222333322 3334444433 2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
+-.++.++ ...|++||.++-.++.....- +...++.++|++||..++..+.||-..+..++..+
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 22344444 467999999998888776532 23468999999999999999999998887776553
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-21 Score=204.29 Aligned_cols=244 Identities=15% Similarity=0.249 Sum_probs=194.1
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCC---CcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l 411 (1088)
....|+|+.-...+||+++..|.|.+||+.. .+.+. .+..|+..|.++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEE
Confidence 4556777765555899999999999999987 22222 2778999999999999 67889
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC-CceeEEeccCCccEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~v~~ 490 (1088)
++|+.||+|++||+...+... ++.+....|..+.|+|...+ .++++...|.+++||++. .++...+..|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876555 56778899999999997665 899999999999999986 4667888999999999
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-CCCCceEEEEEccCCCE-EEEEeeCCCCceeEEEEeCCCC-ce
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AI 567 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~-~~ 567 (1088)
+.|+| ++.+||+|+.|++|+|||+.+........ ....++.++.|-|+..+ |++++.- .+..|++||++.. -+
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv--~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV--VDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc--ccceEEEEeecccccc
Confidence 99977 67899999999999999998655433332 33458899999998765 5555432 3666999999865 34
Q ss_pred eEEEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 001386 568 KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 609 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1088)
..++..|. ..++.++|.. |...+.+++.||+|..-..++
T Consensus 302 ~~t~~eH~---~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 302 YATFLEHT---DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ceeeeccC---ccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 56677777 8899999965 456778888888876555444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=187.04 Aligned_cols=243 Identities=15% Similarity=0.182 Sum_probs=189.9
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEe------------------ccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~------------------~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
|+|+|.|+.|..|.|||+.--..+.+...| .+|+..|.+++|+..-++ +|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 689999999999999998743332222222 279999999999988877 8999999999999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
||+.+|++..++..|...|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|..++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999999999999999999999976 4579999999999999999854333222233457888999998877776663
Q ss_pred CCCCceeEEEEeCCCC-ceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 550 SKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
.+|+++-+|.+.. +++.+++.|. +.|.++++++.. ..+++++.|+.|++|++............-......|
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 3778999999865 8999999998 899999998765 4567799999999999876444222221111223466
Q ss_pred EEEecCC-CEEEEEeCCCcEEEEeCCCCCccc
Q 001386 628 ICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 628 v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
.++.|+- -.++.|+..+.++|||+.+...+.
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhHH
Confidence 7777754 467788888889999998875544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=174.98 Aligned_cols=299 Identities=15% Similarity=0.208 Sum_probs=206.2
Q ss_pred cccccEEEEEEec----CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe
Q 001386 732 VKANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 807 (1088)
Q Consensus 732 ~~~~~i~~~~~s~----~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1088)
.|..+|..++|.+ +...+++......+.+|+.+... +.++++... ...+......++++
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~----------------~ir~lq~y~-D~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG----------------GIRLLQSYA-DEDHDESFYTCSWS 98 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc----------------ceeeeeecc-CCCCCcceEEEEEE
Confidence 3667788888873 33445555556688888865432 111222211 22356666677776
Q ss_pred cCC----CEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee---c
Q 001386 808 KND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL---E 879 (1088)
Q Consensus 808 ~dg----~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l---~ 879 (1088)
-|- -++|+++ -|.|+|.|+.+++....+.+|...|..+.|.|.+.+++++++.|.+|++|++++..++..+ .
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 642 3566665 7999999999999999999999999999999987889999999999999999999999887 5
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-------------eeeeecCCCCcc-------CCCCeEEEE
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSETHIQ 939 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~~~~ 939 (1088)
||.+.|.++.|+++|.+++|+|.|.+|++|+++..+... ...+.....+.. +...|.|+.
T Consensus 179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 699999999999999999999999999999998543111 000111111111 001122222
Q ss_pred EcCCCCEEEE-EeCCeEEEEEc-Ccceeeeee------------ecCCCcCEEEEEEe--eCCCEEEEEeCCCcEEEEEc
Q 001386 940 FHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 940 fs~dg~~l~~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|- |.++++ +.++.|..|.. +-++.+... +.-....+.-+.|+ +-+++||.|...|.|.+||+
T Consensus 259 w~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 259 WF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL 336 (385)
T ss_pred HH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence 21 577887 88899999987 222221111 11124455556555 45789999999999999999
Q ss_pred CCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1004 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
.+.+....- .+.+.-++..++ ..+|+. |+.+|+..++|++|.-||-
T Consensus 337 ~~~ep~~~t----tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 337 DNNEPPKCT----TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCCCccCc----eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 998764111 111222233333 467787 8899999999999999985
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=169.02 Aligned_cols=268 Identities=14% Similarity=0.212 Sum_probs=195.0
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--CC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--dg 408 (1088)
.+|.+-|.++.|.+-|++ +|+++.|++|+|||.....--.. |.. ..+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~----------~Ts-----~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWS----------CTS-----SWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceE----------Eee-----eEEecCCcEEEEEecCcccc
Confidence 589999999999999996 89999999999999755432211 111 1556999999999987 69
Q ss_pred CEEEEEeCCCEEEEEEccC------CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc------
Q 001386 409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------ 476 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~------ 476 (1088)
+.+|+++.|+++.||.-.. +..-....++....+.|+.+.|.|...-+.+++++.||.+|||+....-
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999997621 1112233456677789999999998887899999999999999865432
Q ss_pred eeEEec-------cCCccEEEEeeeeeCCc-eEEEEEecC-----CeEEEEECCCCCc----eEEecCCCCceEEEEEcc
Q 001386 477 RTYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA 539 (1088)
Q Consensus 477 ~~~~~~-------~~~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~ 539 (1088)
+.+.+. .+..+..|+.|+++.-. .+|+.|+.+ +.++||....... ...+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 223333 35566778888755332 466666655 4799998765542 335678888999999999
Q ss_pred CC----CEEEEEeeCCCCceeEEEEeCCCCc-----------------eeEEEeccccccccEEEEEEeCCCCEEEEEeC
Q 001386 540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 540 ~g----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
+- ..||+++. ++ |+||++.... .+..+..+..|++.|..+.|+-.|..|.+.+.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 35666654 33 9999887311 23333334445599999999999999999999
Q ss_pred CCcEEEEEcCC---CeeeEEEeCC
Q 001386 599 DHVIKIWDMNK---VQLLTTIDAG 619 (1088)
Q Consensus 599 dg~i~iwd~~~---~~~~~~~~~~ 619 (1088)
||.|++|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997643 3344444443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-16 Score=186.16 Aligned_cols=373 Identities=24% Similarity=0.393 Sum_probs=286.8
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeccCCc-cEEEEeeeeeCCce-EEEEEec-CCeE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKI 511 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i 511 (1088)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3568999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 9999
Q ss_pred EEEECCC-CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC
Q 001386 512 KAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 512 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
.+|+... ......+..+...+..++|+|+++.+++++. .++.+.+|+...+..+..+.+|. ..+.++.|+|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 210 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDG 210 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCc
Confidence 9999998 7777888899999999999999998777743 36679999999988888888877 899999999999
Q ss_pred C-EEEEEeCCCcEEEEEcCCCeeeE-EEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCc-ccccccccCcc
Q 001386 591 D-QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNL 667 (1088)
Q Consensus 591 ~-~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v 667 (1088)
. .+++++.|+.|++||...+..+. .+..+... . ...|+|++.++++++.|+.+++|+...... +...
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------- 280 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL------- 280 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-------
Confidence 8 45555899999999988777777 46555432 2 228999998999999999999999885532 0000
Q ss_pred eeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCc
Q 001386 668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 747 (1088)
Q Consensus 668 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 747 (1088)
..|...+.++.+.|++.
T Consensus 281 ---------------------------------------------------------------~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 281 ---------------------------------------------------------------SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred ---------------------------------------------------------------ecCCccEEEEEECCCCC
Confidence 12456788889999888
Q ss_pred eEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE--eCCcEEEEE
Q 001386 748 AIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVISLYI 825 (1088)
Q Consensus 748 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~dg~i~iwd 825 (1088)
.+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.+|+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKL------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCce------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888888888889987654332 11111 11355678888884343566665 378899999
Q ss_pred cCCceeEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC
Q 001386 826 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 904 (1088)
Q Consensus 826 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg 904 (1088)
.............. .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++.++
T Consensus 358 ~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (466)
T COG2319 358 LRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434 (466)
T ss_pred cCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC
Confidence 98877333333222 288999998 7 55554 88999999999999888777765547799999999999999999999
Q ss_pred cEEEEEcCC
Q 001386 905 QIFVWDVDG 913 (1088)
Q Consensus 905 ~i~iwd~~~ 913 (1088)
.+++|+...
T Consensus 435 ~~~~~~~~~ 443 (466)
T COG2319 435 TIRLWDLKT 443 (466)
T ss_pred cEEEEeccC
Confidence 999999987
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=180.79 Aligned_cols=294 Identities=16% Similarity=0.202 Sum_probs=216.0
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE-EEEEeCCCcEEEEeCCCCCcccccccccCcceeeee
Q 001386 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1088)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1088)
..++....+++||.........+..+...+.+.++.|+....+ +++.+.|..+++|.-... .. .
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~-~------------- 70 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TP-E------------- 70 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CC-c-------------
Confidence 3444455799999988777777776666667899999986642 233345777888865422 00 0
Q ss_pred cCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEe
Q 001386 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 752 (1088)
Q Consensus 673 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 752 (1088)
|-+-... ....-.|++......+++++
T Consensus 71 -------------------------------------Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~sg 97 (673)
T KOG4378|consen 71 -------------------------------------VPRVRKL----------------TGDNAFCVACASQSLYEISG 97 (673)
T ss_pred -------------------------------------cceeecc----------------ccchHHHHhhhhcceeeecc
Confidence 0000000 00112233333344789999
Q ss_pred ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCcee
Q 001386 753 ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 831 (1088)
Q Consensus 753 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~ 831 (1088)
+..+.|+|||+..... -..+. +|...|+++.+.-...+||+++ .|.|.|..+.++..
T Consensus 98 G~~~~Vkiwdl~~kl~--------------------hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLI--------------------HRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred CcCceeeehhhHHHHH--------------------hhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 9999999999863211 11122 4899999999999999999998 68899999999998
Q ss_pred EEEecCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee-eccccCCeeEEEECCC-CCEEEEEeCCCcEEE
Q 001386 832 ILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDA-LNILVSSGGDAQIFV 908 (1088)
Q Consensus 832 ~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~-l~~h~~~V~~l~~s~d-g~~las~s~Dg~i~i 908 (1088)
..+|....+ .++-+.|+|....+|.+++++|.|.+||+........ .+.|..+...|+|+|. ..+|++.|.|..|.+
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 888886644 5568999996666888999999999999998766544 4679999999999995 467899999999999
Q ss_pred EEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCC
Q 001386 909 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 986 (1088)
Q Consensus 909 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg 986 (1088)
||+........... . .+...++|+++|.+|++| ..|.|..||++..+........|...|++++|-+..
T Consensus 236 yD~~s~~s~~~l~y-----~----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 236 YDIRSQASTDRLTY-----S----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecccccccceeee-----c----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99986432222111 1 257899999999999996 678999999998776666677899999999998754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-20 Score=211.65 Aligned_cols=299 Identities=15% Similarity=0.250 Sum_probs=228.8
Q ss_pred CceeeeecCCCCeEEEEEccc----------CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 336 SPMSMDFHPVQHTLLLVGTNV----------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~d----------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
.-..++|||++..++|+|... .++.||.+.-...... .+..--..-....+.++|.
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~ 73 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWG 73 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeec
Confidence 335679999998678877543 3445554432211100 0000011134677889999
Q ss_pred CCCCE----EEEEeCCCEEEEEEccC---CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 406 PDGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 406 ~dg~~----las~~~dg~i~vwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
+.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++...+ +|++|+.||.|.|||+.+-+.-
T Consensus 74 ~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP 152 (1049)
T KOG0307|consen 74 SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETP 152 (1049)
T ss_pred ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCC
Confidence 97766 89999999999999876 4444455577899999999999999887 7999999999999999876554
Q ss_pred EEec--cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC--ceEEEEEccCCCEEEEEeeCCCCc
Q 001386 479 YSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 479 ~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
.+.. .....|.+++|+.. ..+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++..-+....+.+..
T Consensus 153 ~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~ 231 (1049)
T KOG0307|consen 153 FTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA 231 (1049)
T ss_pred CCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence 4442 24577999999643 457899999999999999999988777766655 578899999876544444455668
Q ss_pred eeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
..|.+||++. ...++++++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+ ..+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence 8999999884 45677888888 899999999876 788899999999999999999999998643 3688999999
Q ss_pred CC-CEEEEEeCCCcEEEEeCCCCC
Q 001386 633 NG-TLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 633 ~~-~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
.. ..+++++-||.|.|+.+.+..
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcchhhhheeccceeeeeeecCC
Confidence 55 488999999999999988653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-18 Score=180.82 Aligned_cols=606 Identities=12% Similarity=0.120 Sum_probs=364.4
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC-----
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG----- 408 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg----- 408 (1088)
...-.++.|+|.| ++|.|+. ..|.+-|..+-+.+.. +.-|...|+.+.|+|-.
T Consensus 15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence 3357889999999 6888875 6788999988887765 55589999999998731
Q ss_pred -------CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC---CCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 409 -------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 409 -------~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
-+||++...|.|.+||...+..+. .+..|..++..++|-+ +.+. +|+.-....++.+|+..+|+..
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence 267788888999999999887655 5778888999998865 3434 5666666789999999999998
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC------ceEEecCC-CC---------------------
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAP-GL--------------------- 530 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~-~~--------------------- 530 (1088)
...........++.+.|-.. ..+..-+..|.+.+-+.-... ..+.+... ..
T Consensus 149 Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 149 WKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 88776666677777766644 344444555666665542111 11111111 00
Q ss_pred ----ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC--CEEEEEeCCCcEEE
Q 001386 531 ----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKI 604 (1088)
Q Consensus 531 ----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~i 604 (1088)
-+..++|+|.-+.++.....++ +.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~pre----llv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRE----LLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccc----eEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEE
Confidence 0123567887665555554333 9999999888888777655 556666676664 57889999999999
Q ss_pred EEcCCC----------------eeeEEEeCCCCCCCCceEEEecC-CCEEEEEeCCCcEEEEeCCCCCcccc--------
Q 001386 605 WDMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDA-------- 659 (1088)
Q Consensus 605 wd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 659 (1088)
|-.... .....+..-... .....+..|. ...++..-.+|.+.+|.+.+++....
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel 379 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIEL 379 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccc
Confidence 976541 122222111111 1122233343 44555556678888888885532111
Q ss_pred -----------------------cccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 660 -----------------------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 660 -----------------------~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
..+|.....+....|.+......+..+. ..+..--.+++.|...|+|.+.|+.
T Consensus 380 ~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~----n~~~~~~pLvAvGT~sGTV~vvdvs 455 (1062)
T KOG1912|consen 380 VLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGG----NTPAGTVPLVAVGTNSGTVDVVDVS 455 (1062)
T ss_pred cccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCC----CccceeeeeEEeecCCceEEEEEec
Confidence 1123334444444444433322221110 0001123457889999999999976
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc--cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD 794 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1088)
.+.-.... ..|...|.++.|......+-.+.+. ....+ ....+.+-++++|.......+++
T Consensus 456 t~~v~~~f------svht~~VkgleW~g~sslvSfsys~~n~~sg~-----------vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 456 TNAVAASF------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGG-----------VRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred chhhhhhh------cccccceeeeeeccceeEEEeeeccccccccc-----------eeeeEEEEEcccccccccccCCC
Confidence 54332222 2388899999998877754333321 10001 11233445666666444333332
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEc-CC---------------CCcEEEE
Q 001386 795 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNVIAI 857 (1088)
Q Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~---------------d~~~las 857 (1088)
..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++...-.-.-++.+.|+ |. ..+..+.
T Consensus 519 -~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ 597 (1062)
T KOG1912|consen 519 -PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVL 597 (1062)
T ss_pred -CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeee
Confidence 4678999999999999999997 7789999998877666555444458888887 31 1123333
Q ss_pred EeCCCeEEEEEcCC-------ceeee-eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001386 858 GMDDSTILIYNARS-------SEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 929 (1088)
Q Consensus 858 g~~dg~i~lwd~~~-------~~~~~-~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 929 (1088)
.+ +..+++.+.. +..+. ..+...-.+..++| .+..|+.|..+|.+.+||+.....+. ......+.
T Consensus 598 ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg---~~d~p~~r 670 (1062)
T KOG1912|consen 598 DS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG---VRDSPDPR 670 (1062)
T ss_pred cc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC---ccCCCCch
Confidence 33 2233333211 11111 11111122334666 46789999999999999987643111 11111111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 930 TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 930 ~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
.......+-|....+++-...-+-+||.+....+..+ .+.......+...-+++.-..-..|.++|+-.+....
T Consensus 671 ---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l~~d~~~Rf~~m~mks 744 (1062)
T KOG1912|consen 671 ---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVLPNDNKERFRVMPMKS 744 (1062)
T ss_pred ---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceecCCCCceeEEeccccC
Confidence 1233344455444455545556889999988877775 4555555555554455443333455577776655543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-16 Score=183.17 Aligned_cols=289 Identities=26% Similarity=0.414 Sum_probs=221.6
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCc-ceeeeceeeeeeccccccceeeeecCCC-CCeEEEEE-C
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 405 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~-s 405 (1088)
.+..|...|.++.|.+++. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 5678899999999999998 67888889999999999886 3322 22322 46777777 8
Q ss_pred CCCC-EEEEEeC-CCEEEEEEccC-CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEe
Q 001386 406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 406 ~dg~-~las~~~-dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-d~~i~vwd~~~~~~~~~~ 481 (1088)
+++. +++..+. |+.+.+||... .... ..+..|...|..++|+|++. .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999997 4333 36789999999999999999 6777775 999999999999999999
Q ss_pred ccCCccEEEEeeeeeCCce-EEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.+|...|.++++. +++. .+++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4555 55556999999999888666655 466666664 3489999988886654 566999
Q ss_pred EeCCCCce-eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe--CCCCCCCCceEEEecCCCE
Q 001386 560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~ 636 (1088)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.|.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 342 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSL 342 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCE
Confidence 99987665 44444444 889999999998999988888999999998877666665 3332 4677777333245
Q ss_pred EEEE-eCCCcEEEEeCCCC
Q 001386 637 LAVI-ANENRIKILETPES 654 (1088)
Q Consensus 637 l~~~-~~dg~i~iwd~~~~ 654 (1088)
++.+ ..|+.+.+|+....
T Consensus 343 ~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEEeecCCCcEEeeecCCC
Confidence 5554 56677777776643
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=180.34 Aligned_cols=294 Identities=13% Similarity=0.162 Sum_probs=219.3
Q ss_pred EEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEccCC
Q 001386 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGG 428 (1088)
Q Consensus 350 la~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~ 428 (1088)
+|+++ .+++|||+...+....+. -....-.+.++.|+.... .+|+.+.|..+++|.-...
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK 67 (673)
T ss_pred eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCC
Confidence 44443 679999997665432110 001123489999987654 2334456778899975543
Q ss_pred Cc-ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec
Q 001386 429 SD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1088)
Q Consensus 429 ~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1088)
.. +.......+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.+.. ...+|++++.
T Consensus 68 ~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~ 141 (673)
T KOG4378|consen 68 TPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSD 141 (673)
T ss_pred CCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEecc
Confidence 11 1111112222 233443333334 899999999999999998888889999999999999854 5579999999
Q ss_pred CCeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE
Q 001386 508 DGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 586 (1088)
Q Consensus 508 dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 586 (1088)
.|.|.+..+.+......+.... ..+.-+.|+|..+.+++...+ ++.|.+||+.....+..+.. .|..+...++|
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicf 216 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICF 216 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCccee
Confidence 9999999999888877777664 456689999999888776532 67899999988776554432 33588999999
Q ss_pred eCCCC-EEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC-Cccccccccc
Q 001386 587 DTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLS 664 (1088)
Q Consensus 587 ~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 664 (1088)
+|... .|++.+.|..|.+||....+....+.... +...++|+++|.+|+.|+..|.|..||+... .++..+..|.
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 99765 56678999999999999877777776443 4689999999999999999999999999865 6677888999
Q ss_pred CcceeeeecCCC
Q 001386 665 DNLRKLSVNPIS 676 (1088)
Q Consensus 665 ~~v~~~~~~p~~ 676 (1088)
..|++++|.|..
T Consensus 294 ~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ASVTRVAFQPSP 305 (673)
T ss_pred cceeEEEeeecc
Confidence 999999999875
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=169.29 Aligned_cols=409 Identities=10% Similarity=0.106 Sum_probs=259.2
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 401 ~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
-++|||+|+++|+.+.- .+.|-|.++-+..+.+ .--..|..+.|..|.-. .+.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999766 6888898886544322 11346888999999875 566778899999999999998888
Q ss_pred eccCCccEEEEeeeeeCCc-eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
+.....++.+++|+| +| +.|.+...|-+|.+|.+.+...... ......+..++|+|||++.+.++.- +-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999955 55 6777888899999999987665432 3344456889999999999988642 22233334
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1088)
...+....++.+...+ -....+.|+|||+.+++ ||.--.-.+...... -.+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~---lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeeec---cceeEEEeccccceEEe
Confidence 3334445556666555 66788999999988765 442211111122211 13688999999999999
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
|+.|+.+|+.+--+-+.+..+- |-..+ .|.+..+-..+..+
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999997755443332211 10000 01110000000000
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
. ..-...++.|.|..--. +-....-.+|+.... .+++ . .........+..-
T Consensus 269 ~------------~ql~~~cLsf~p~~~~a--~~~~~se~~YE~~~~--------pv~~---~----~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDLEA--HIWEESETIYEQQMT--------PVKV---H----KLKPPTDFPNPKC 319 (447)
T ss_pred h------------hhhcccccccCCCcccc--Cccccchhhhhhhhc--------ceee---e----cccCCCCCCCccc
Confidence 0 00111233333322100 000000001111000 0000 0 0000000112345
Q ss_pred CeeEEEEecCCCEEEEEeC---CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001386 800 AVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 876 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~ 876 (1088)
.+.-++||+|..++++-.| +.+.+||+...+....+. ...+|.+..|.| +...|+.......+++|.......+.
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEe
Confidence 6778999999999999876 569999998776655544 557899999999 77778877777789999877655544
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCc
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQ 905 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~ 905 (1088)
. .+..-.|..+.|.-+|..++-.+.|.-
T Consensus 398 v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 398 V-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred c-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 3 334467999999999999999998863
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-18 Score=168.81 Aligned_cols=303 Identities=14% Similarity=0.173 Sum_probs=219.3
Q ss_pred cccEEEEEEecCCc-eEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 734 ~~~i~~~~~s~~g~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
..++..+.|.+++. .+++++.|..|++|.+........ .........+. .|...|+++.|+|+|..
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-----------~~~V~y~s~Ls--~H~~aVN~vRf~p~gel 79 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-----------DMKVEYLSSLS--RHTRAVNVVRFSPDGEL 79 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-----------ceeEEEeeccc--CCcceeEEEEEcCCcCe
Confidence 35788888888877 899999999999999877654110 01112222233 49999999999999999
Q ss_pred EEEEe-CCcEEEEEcC--------C--------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 813 LFSAS-GGVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
+|+|+ +|.|.+|-.. + +.....+.+|...|..++|+| ++.++++|+-|..+++||+..|.++
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE
Confidence 99998 6889999765 2 344566788999999999999 8999999999999999999999999
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eecCCCCccC------------CCCeEEEEE
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMTL------------APSETHIQF 940 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~------------~~~v~~~~f 940 (1088)
..+.+|..-|..++|.|-++++++-+.|...+++.+.......... +....+.... ......++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 9999999999999999999999999999977777776533221111 0100111000 023467899
Q ss_pred cCCCCEEEEE-----eCC-----eEEEEEcCcceeeeeeecCCCcCEEEEEEee--------C---------CCEEEEEe
Q 001386 941 HKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------D---------CRMVFTSF 993 (1088)
Q Consensus 941 s~dg~~l~~~-----~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------d---------g~~l~s~s 993 (1088)
+|||.+|++. ..+ ..++|+-...+.....+++-..++..+.|+| + -++++...
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA 318 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA 318 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence 9999999982 223 3466665544433333444456666777766 1 12344444
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 994 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 994 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
....|.|||..+...++......|.+ .+.++|++ ||..|+..+.||-+-+-.+...+
T Consensus 319 t~~svyvydtq~~~P~~~v~nihy~~---------iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 319 TKNSVYVYDTQTLEPLAVVDNIHYSA---------ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ecceEEEeccccccceEEEeeeeeee---------ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 56689999999988887766333322 25689999 89999999999977776665444
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-17 Score=175.59 Aligned_cols=482 Identities=12% Similarity=0.120 Sum_probs=294.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC----------CCcEEEEEEeCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDD 464 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~l~l~s~s~d 464 (1088)
|...-.++.|+|.| +||.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|- ...++++++...
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 34446778999866 77887654 58888988876555 67789999999999763 234578899999
Q ss_pred CcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCc--eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc-CC
Q 001386 465 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NG 541 (1088)
Q Consensus 465 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g 541 (1088)
|.|.+||...+..+..+..|..++..++|.+..+. .+|+.-.....+.+|+..+++.............|+.+.| |.
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 99999999999999999999999999999876554 4778888889999999999999888887777777888888 44
Q ss_pred CEEEEEeeCCCCceeEEEEeCC-------CCceeEEEecccc----------------cccc------EEEEEEeCCCCE
Q 001386 542 RRLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQ 592 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~~~~~~ 592 (1088)
+.+..-+. .+.+.+-+.- .|+..+.-..|.. .... ...++|+|.-+.
T Consensus 169 rh~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 169 RHFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred ceEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 44444432 3334443321 1222222222210 0000 112467887777
Q ss_pred EEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC--CEEEEEeCCCcEEEEeCCCCCccccc-----cc-cc
Q 001386 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----GV-LS 664 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~-~~ 664 (1088)
++.......+.++|++-..++.......+ .+.-+.+-|++ ..|.+...||.+.+|-.......... .. ..
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccc
Confidence 77777788899999999999988887655 35567777765 46889999999999976642111111 00 11
Q ss_pred CcceeeeecCCCcceeccccCCceeecCCCCCC-CCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEe
Q 001386 665 DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 743 (1088)
Q Consensus 665 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 743 (1088)
..+.++... ..... +.+.--|. ...++.--.+|.+.+|++..+.......... ..-+..+.|.
T Consensus 323 ~Q~~~vr~m--~~~rp---------~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~-----iel~~pf~f~ 386 (1062)
T KOG1912|consen 323 EQVHVVRPM--EEFRP---------VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSS-----IELVLPFDFN 386 (1062)
T ss_pred cceEEEeec--hhccc---------ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccc-----cccccccccc
Confidence 122222111 11000 00000111 2333444456777888865322111111100 0001111111
Q ss_pred c-----CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC-------C
Q 001386 744 N-----GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-------A 811 (1088)
Q Consensus 744 ~-----~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-------~ 811 (1088)
. -...++..+.||.. ..|....... .....+-....|.| .
T Consensus 387 ~~~~~v~k~~l~~LS~dg~h-----------------------~sGs~~~~~~-----p~p~~t~~~~~p~~n~~~~~~p 438 (1062)
T KOG1912|consen 387 LSTKLVGKTSLISLSDDGSH-----------------------SSGSTCVRMR-----PMPELTKVENDPGGNTPAGTVP 438 (1062)
T ss_pred CceeehhhccccchhhcCCC-----------------------CCCceeeecc-----cCcccceeecCCCCCccceeee
Confidence 1 11122333333300 0010000000 00000011111111 2
Q ss_pred EEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe----------CCCeEEEEEcCCceee--eee
Q 001386 812 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEVI--SKL 878 (1088)
Q Consensus 812 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----------~dg~i~lwd~~~~~~~--~~l 878 (1088)
++|.|. .|+|.++|+.++...+.+..|.+.|.++.|.. .. .|++.+ .-+.+.|-|+++|... .-+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l 516 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL 516 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ce-eEEEeeeccccccccceeeeEEEEEcccccccccccC
Confidence 567776 79999999999999999999999999999985 33 344332 2246788899998542 222
Q ss_pred c-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc
Q 001386 879 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 941 (1088)
Q Consensus 879 ~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 941 (1088)
+ ....+|..+..|.-|+||+..-.|.-+.+||+++-. +++...-..+ -|+.+.|+
T Consensus 517 ~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWs 572 (1062)
T KOG1912|consen 517 QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWS 572 (1062)
T ss_pred CCCCcCcceeeeecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeec
Confidence 2 356789999999999999999999999999998732 2222221111 37888887
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=169.90 Aligned_cols=237 Identities=16% Similarity=0.261 Sum_probs=186.4
Q ss_pred eecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc----cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
.+.||.++|..++|+| +...||+||.|.+|.||.+..+... .+...|.+|...|..++|+|.-.+ +|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4889999999999999 7889999999999999999865442 345578999999999999999887 899999999
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC-ceEEEEEccCCCEE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 544 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l 544 (1088)
+|.+||+.+|+.+.++. |...|++++| +.||.++++.+.|+.|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999998888 9999999999 55888999999999999999999988877766654 456677889998 7
Q ss_pred EEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeee-EEEeCCCCC
Q 001386 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL-TTIDAGGGL 622 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~-~~~~~~~~~ 622 (1088)
++.+.++-.+.++-+||...-+.-..+.... ....|.--.|.+|.+.++. |-.|+.||-|.+....+. .-+......
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777778788999999987544322222211 1345666678888887766 458999999999876532 222222222
Q ss_pred CCCceEEEecC
Q 001386 623 PENPRICFNKN 633 (1088)
Q Consensus 623 ~~v~~v~~s~~ 633 (1088)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 33456666664
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=170.34 Aligned_cols=264 Identities=16% Similarity=0.213 Sum_probs=187.1
Q ss_pred ecccCCCCceeeeecCCC-CeEEEEEcccCcEEEEecCCCcc-eeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 329 TLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQK-LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg-~~lla~g~~dg~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
....|.+.+..+.-++-| ..++|+-+..|.|.|||+...-. +....+.+-+ ....+...+.+|...=..++|||
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeeccc
Confidence 345677788888888765 34677778889999999864211 1111111111 11112233788999999999999
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEec
Q 001386 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE 482 (1088)
Q Consensus 407 -dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~---~~~~~~~ 482 (1088)
....|++|..-+.|++|...+|.-......+.+|+..|-.++|||..+. ++++||.||+|+|||++.+ .++.+ +
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-e
Confidence 3345778877778999999987644444457789999999999998877 8999999999999999988 34444 7
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC---CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.|.+.|+.+.|+. +-.+|++|+.||+++|||++.- +.+..+..|..+|+++.|+|...-.+.++. .+.+|.+
T Consensus 300 Ah~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Qiti 374 (440)
T KOG0302|consen 300 AHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITI 374 (440)
T ss_pred ccCCceeeEEccC--CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEE
Confidence 8999999999954 4449999999999999999854 456789999999999999996654444332 2667999
Q ss_pred EeCCCCce----------------eEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEE
Q 001386 560 WNESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 605 (1088)
Q Consensus 560 wd~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw 605 (1088)
||+....- .+.+-.|. ....+..+.|++.- .++++.+.|| +.||
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99863211 01112222 12467778888764 4566666666 4444
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=174.28 Aligned_cols=263 Identities=16% Similarity=0.146 Sum_probs=196.9
Q ss_pred cCCCCCeEEEEECCC--CCEEEEEeCCCEEEEEEccCCC-cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 393 RDPGVSVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~d--g~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
.-+.+.|++++|+|. -+++|+|..-|.|-+||+.+.+ .......+..|.++|.++.|+|.+.. .+++.|.||+|+.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDGTIRL 261 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCceeee
Confidence 337899999999994 3688999999999999995332 23344467899999999999998776 7899999999999
Q ss_pred EeCCCCce--eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCE-EE
Q 001386 470 WDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRR-LF 545 (1088)
Q Consensus 470 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~-l~ 545 (1088)
-|++++.. +.++..-...+.++.|. .+...++.+..=|...+||+++... ...+..|...|.+++++|...+ |+
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~--~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFS--AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeecchhhHHHhhcCccceeeeecccc--CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 99987643 33333344455666663 3445677777777999999998876 4566777789999999997665 56
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEE-EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc----CCCeeeEEEeCCC
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM----NKVQLLTTIDAGG 620 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~----~~~~~~~~~~~~~ 620 (1088)
+++. +.+.+|||++.-..... +-....|...|.++.|+|.+..|++.+.|..|+|||. ....+..++....
T Consensus 340 T~s~----D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 340 TASL----DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred eccc----CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 6654 66799999986443332 1111224489999999999989999999999999998 3444555554332
Q ss_pred CC---CCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 001386 621 GL---PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 621 ~~---~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
.. -.....+|.|+..++++|..-..|-|+|-..++.+..+..
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC
Confidence 11 1245678999999999999999999999998876655443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=162.39 Aligned_cols=228 Identities=15% Similarity=0.175 Sum_probs=170.6
Q ss_pred cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCC---eeEEEEecCCCEEEEEeCCc
Q 001386 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEA---VPCFALSKNDAYLFSASGGV 820 (1088)
Q Consensus 744 ~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~dg~~l~~~~dg~ 820 (1088)
|+..++++.+.+.-|++||.-+++...+ +....|... ..+++|+|||..|+.|....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraS--------------------y~~ydh~de~taAhsL~Fs~DGeqlfaGykrc 180 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRAS--------------------YRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC 180 (406)
T ss_pred CccceeeeccccCceeeeeccccccccc--------------------hhhhhhHHhhhhheeEEecCCCCeEeecccce
Confidence 5566777777788888887666554222 111123333 35799999999999999999
Q ss_pred EEEEEc-CCceeE--E-Eec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECC
Q 001386 821 ISLYIV-MTFKTI--L-TIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 892 (1088)
Q Consensus 821 i~iwd~-~~~~~~--~-~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~ 892 (1088)
|++||+ ..|..- . ++. +..+.+.+++|+|.+.+.+|+|+....+-||.-..+.++..+.+|.+.|+.+.|.+
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 999999 344321 1 111 23567899999998888999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCc-ceeeeee
Q 001386 893 ALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-LTCLKQW 969 (1088)
Q Consensus 893 dg~~las~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~-~~~~~~~ 969 (1088)
||+.|.+|+. |-.|..||+.... ..+-.+..|......-.-....|+|++|++| .||.|++||+++ |.....
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv- 335 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV- 335 (406)
T ss_pred CcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc-
Confidence 9999999984 6779999998633 2233333333212223345567899999996 899999999998 554444
Q ss_pred ecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 970 FPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 970 ~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
...|...+..+++.|-=..++|++...
T Consensus 336 ~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cccccccccceecCcccceeeeccCce
Confidence 556789999999999877788776553
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-18 Score=164.11 Aligned_cols=287 Identities=14% Similarity=0.215 Sum_probs=207.9
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccc--eeeeecCCCCCeEEEEEC-------CCC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWS-------PDG 408 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~h~~~V~~l~~s-------~dg 408 (1088)
..+.|||||.- +.+-+.|..+.+|++...---.... ....+ +..+---....|...+|- |+.
T Consensus 53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~--------~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKAD--------GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred ccceeCCCCce-EEeecccCeeeEEecChhhcccCCC--------CccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 45789999995 6677899999999985321100000 00000 000011134567777775 678
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCC---EEEEEecCCCCcEEEEEEeCCCcEEEEeC-CCCcee--EEe-
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF- 481 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~---v~~~~~s~d~~~l~l~s~s~d~~i~vwd~-~~~~~~--~~~- 481 (1088)
.++|+.+.+.-|++||.-+|+...... ...|... ..+++|+|||. .|+ ++....|+++|+ +.|+.- ...
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhh
Confidence 899999999999999999998654332 2245443 45799999999 455 556889999998 455422 111
Q ss_pred ----ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 482 ----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 482 ----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
.+..+-+.+++|+|. +...++.|+...++-|+.-........+.+|++.|+.+.|.++|+.|++++.. +..|
T Consensus 200 ~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKI 275 (406)
T ss_pred hcccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeE
Confidence 223677888899876 44689999999999999989999999999999999999999999999999853 5569
Q ss_pred EEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEecCCC
Q 001386 558 VEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGT 635 (1088)
Q Consensus 558 ~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1088)
..||++. +..+..+..|......-.-....|++++|++|+.||.|++||+.+ |..+..+..+.. .++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccc
Confidence 9999984 556666766662122222345578899999999999999999998 776666655543 588999999988
Q ss_pred EEEEEeCC
Q 001386 636 LLAVIANE 643 (1088)
Q Consensus 636 ~l~~~~~d 643 (1088)
++|+++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88887765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-17 Score=167.92 Aligned_cols=498 Identities=14% Similarity=0.097 Sum_probs=300.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe------cCCCCcEEEEEEeCCCcEE
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d~~~l~l~s~s~d~~i~ 468 (1088)
|...|.|+.|+.+...+.+++++..+.-||+.+... ... .-....|....+ -..+..-.++.++.||.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~---~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA---KLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhh-hhh---hCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 777788999998877777765555555556654332 111 111111111111 0111111577788899999
Q ss_pred EEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+.+ +.|+.-+.+..|.+.+.+-.| ++||.-|++++.||.|++|.- ++-...++.....+|+|++|.|+...++.+.
T Consensus 89 il~-k~~rVE~sv~AH~~A~~~gRW--~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 89 ILN-KSARVERSISAHAAAISSGRW--SPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred Eec-ccchhhhhhhhhhhhhhhccc--CCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 998 888888899999999999988 557778999999999999963 3333344555667899999999998888775
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
.+.+.|=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..++||.. |..+..-..|.. +|+++
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSv 233 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSV 233 (737)
T ss_pred -----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeee
Confidence 3347777777666667778877 999999999999999999999999999975 555555555544 69999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
+|+|+ ..++.++.. ++++ .
T Consensus 234 a~npd-~~~~v~S~n-t~R~---~-------------------------------------------------------- 252 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSYN-TARF---S-------------------------------------------------------- 252 (737)
T ss_pred eeccc-cceeeeeee-eeee---c--------------------------------------------------------
Confidence 99999 666666542 3331 0
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
.+..+.|..++||+||..+..+...|.+.+=-.-...
T Consensus 253 ----------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~--------------------- 289 (737)
T KOG1524|consen 253 ----------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ--------------------- 289 (737)
T ss_pred ----------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh---------------------
Confidence 0134678889999999999998888876542110000
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEE-EeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFS-ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
+ . -+.+=++ .....|.+-|+.++.. ..+. ....+...+..- .+|+++. ...|++|
T Consensus 290 ---l-------------~--~~n~~~t~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y---~hLvvaT-s~qvyiy 345 (737)
T KOG1524|consen 290 ---L-------------V--SGNLKATSKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY---GHLVVAT-SLQVYIY 345 (737)
T ss_pred ---h-------------h--hccceeEeeccceEEeehhhhhHH-HHhh-Cccceeeeeece---eEEEEEe-ccEEEEE
Confidence 0 0 0011111 1244566777665543 2222 345566666554 2344333 3468888
Q ss_pred EcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 868 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 868 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
.-........+.+....+.-+.-+ ...+++ ...-+|.++..+.......+ +.|... .....-..|-....|
T Consensus 346 s~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~np~----~Pg~~~--dlL~~rtlsLandtL 416 (737)
T KOG1524|consen 346 SEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLNPR----YPGSQI--DLLTWRTLSLANDTL 416 (737)
T ss_pred ecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecCCC----CCCccc--ccccceeeecccceE
Confidence 766544444455444433222211 112233 23344666665542211110 111111 011122333334445
Q ss_pred EE--EeC-CeEEEEEc-Ccceeeeeee-cCCCcCEEEEEEe----eCCCEEEEEeCCCcEEEEEcCCCceEEEecccccc
Q 001386 948 LL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1018 (1088)
Q Consensus 948 ~~--~~d-~~i~vwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 1018 (1088)
+. ..| ..+++||. .+|+....-. -.|...+..++.. ++++.++.-...+.+.|=.+.+.....++.....
T Consensus 417 aird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGT- 495 (737)
T KOG1524|consen 417 AIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGT- 495 (737)
T ss_pred EeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhh-
Confidence 55 233 45889998 7777653311 2345555555553 4667777777777777766655433222221111
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1019 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
....++|+ |..-+++|-.|+.+.||=.+...
T Consensus 496 ---------mVhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 496 ---------MVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred ---------hhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 12346777 45668889999999999886644
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=172.02 Aligned_cols=175 Identities=22% Similarity=0.365 Sum_probs=147.1
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
..-+.+..+|.++=.+++|||--.--|++|..-+.|++|...+|.-... ..-+.+|+..|-.++
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQ 264 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhhc
Confidence 4557788999999999999993222378888889999999999763321 112677999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC---CceeE
Q 001386 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY 479 (1088)
Q Consensus 404 ~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~---~~~~~ 479 (1088)
||| ....||+||.||+|+|||+..+...... ..+.|.+.|+.|.|+.+-. +|++|+.||+++|||+++ ++++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence 999 5678999999999999999998543333 3479999999999999888 899999999999999874 67889
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1088)
.|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 9999999999999998765 5888899999999999853
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=195.43 Aligned_cols=287 Identities=19% Similarity=0.283 Sum_probs=222.4
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
.+..|.||...|.|+.|...|. ++++|+.|..++||...++.++.. ..||.+.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 3466789999999999999998 699999999999999999999876 88999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE---ec
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FE 482 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~---~~ 482 (1088)
.+..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+-.-.+.. +.
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999998766 68899999999999994 3678899999999871111111 11
Q ss_pred c-CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001386 483 G-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1088)
Q Consensus 483 ~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 561 (1088)
. ...-+.++.| ..++..+++++.|+.-..|.+.-.. .+...+.-+.++.+-..+.... ..+..+.+|+
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~a---r~~~~~~vwn 381 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTA---RNDHRLCVWN 381 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceee---eeeeEeeeee
Confidence 1 1233444444 4566789999999998888654211 1111122222333332222222 2256688999
Q ss_pred CCCCceeEEEeccccccccEEEEEEeCCCCEEE-EEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
+.+|...+.+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... ...+....||+||..++..
T Consensus 382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecC
Confidence 99999999999998 8999999999876664 5899999999999999988877633 2346788999999999999
Q ss_pred eCCCcEEEEeCCCCCcc
Q 001386 641 ANENRIKILETPESNSV 657 (1088)
Q Consensus 641 ~~dg~i~iwd~~~~~~~ 657 (1088)
.+-|.+.|.....++..
T Consensus 457 d~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCceEEeccCCCccc
Confidence 99999999988766543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=172.55 Aligned_cols=258 Identities=13% Similarity=0.159 Sum_probs=185.6
Q ss_pred CCeEEEEEcccCcEEEEecCCCccee-eeceeeee-eccccccceeeeecCCCCCeEEEEECCC-CCEEEEEeCCCEEEE
Q 001386 346 QHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWD-IGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQL 422 (1088)
Q Consensus 346 g~~lla~g~~dg~i~iwd~~~~~~~~-~~~~~~~d-~~~~~~~~~~~~~~~h~~~V~~l~~s~d-g~~las~~~dg~i~v 422 (1088)
|. ++|.|+.|..|.|||+.=...+. ...+.--- ..............+|+..|-+++|+.+ ...||+||.|.+|++
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 45 79999999999999996433221 00000000 0000000122235689999999999984 568899999999999
Q ss_pred EEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE
Q 001386 423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502 (1088)
Q Consensus 423 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 502 (1088)
||+.+|++.. .+..|.+.|.++.|.|.... +|++|+.|++|.+.|.+........-...+.|..++|.+... ..+
T Consensus 271 WD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~~f 345 (463)
T KOG0270|consen 271 WDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-NSF 345 (463)
T ss_pred EEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-eeE
Confidence 9999998776 67789999999999998776 899999999999999985333322222557788899876643 578
Q ss_pred EEEecCCeEEEEECCCC-CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccE
Q 001386 503 FSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581 (1088)
Q Consensus 503 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v 581 (1088)
+++..||+|+-+|++.. ++..++..|..+|.++++++....+++.+ ..+..+.+|++..-... ....|...-+..
T Consensus 346 ~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl 421 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFKLGRL 421 (463)
T ss_pred EEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-ccccccccccce
Confidence 88899999999999987 67889999999999999999776655543 23677999998643321 111122112446
Q ss_pred EEEEEeCCCCEEE-EEeCCCcEEEEEcCCCeee
Q 001386 582 SVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 582 ~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~ 613 (1088)
.|.++.|+-.+++ .|+..+.++|||+.+...+
T Consensus 422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 7777888766554 5777788999999876544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=159.84 Aligned_cols=337 Identities=12% Similarity=0.157 Sum_probs=224.0
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeee
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 613 (1088)
.+|||+|+++|++.. ..+.|-|..+-+..+.+... +.|.-+.|..|.-++++ ...++.|.+|++...+..
T Consensus 14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 589999999999873 35888888877766655543 36788889999888777 567889999999988877
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEE-eCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecC
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 692 (1088)
..++.. ...+..++|||||+.+... .-+-.|.+|.+.+.+.....
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-------------------------------- 130 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-------------------------------- 130 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--------------------------------
Confidence 777643 4468999999999766554 45888999988865332110
Q ss_pred CCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCC
Q 001386 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1088)
Q Consensus 693 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~ 772 (1088)
. ....+..++|.+||++.+..+.-.....+++.
T Consensus 131 -----------------------------------~----pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~-------- 163 (447)
T KOG4497|consen 131 -----------------------------------H----PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS-------- 163 (447)
T ss_pred -----------------------------------c----cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence 0 11234667888888876655542111110000
Q ss_pred CCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcC
Q 001386 773 EVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 849 (1088)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 849 (1088)
..+-|.+-....+ ..-..+.+.++|||..+|+-. +-.|..|.. .-.+..++|+|
T Consensus 164 --~c~~W~ll~~f~~---------dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v~wsP 220 (447)
T KOG4497|consen 164 --SCKAWILLKEFKL---------DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFVEWSP 220 (447)
T ss_pred --hhHHHHHHHhcCC---------CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEEEecc
Confidence 0111211111101 233455688888888887754 233333332 23567788888
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCcee-------------------------------------------------------
Q 001386 850 HDNNVIAIGMDDSTILIYNARSSEV------------------------------------------------------- 874 (1088)
Q Consensus 850 ~d~~~lasg~~dg~i~lwd~~~~~~------------------------------------------------------- 874 (1088)
.+++|++|+.|+.++|.+--+.+.
T Consensus 221 -~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 221 -CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred -ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 788888888888887754322211
Q ss_pred -----eeeec------cccCCeeEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc
Q 001386 875 -----ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 941 (1088)
Q Consensus 875 -----~~~l~------~h~~~V~~l~~s~dg~~las~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 941 (1088)
+..++ ...-.+.-++||+|..+++|-.+ -..+.+||+..-+ ....+.... +|....|.
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk~----piraf~Wd 370 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQKH----PIRAFEWD 370 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhcc----ceeEEEeC
Confidence 11111 11224667899999999998653 2569999998733 223332222 58999999
Q ss_pred CCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 942 KDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 942 ~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
|....|++. ....+++|......++..... +-.|..++|.-+|..++..+.|.
T Consensus 371 P~~prL~vctg~srLY~W~psg~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 371 PGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CCCceEEEEcCCceEEEEcCCCceEEecCCC--CceeeeEEecCCCcEEEEEcCCc
Confidence 999888884 556799999887666665444 58899999999999999888875
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=164.99 Aligned_cols=236 Identities=14% Similarity=0.177 Sum_probs=178.5
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg 408 (1088)
..||+++|..++|.|-....+|+||.|.+|.||++..+...... .-+...|.||...|.-++|+| ..
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLVQWHPTAP 144 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEEeecccch
Confidence 46999999999999987779999999999999999877655431 122334899999999999999 56
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
+.|++++.|.+|.+||+.+|+.+- ++. |...|.++.|+.||. ++++.+.|+.|+|||.++|+.+..-.+|.+.-
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred hhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 788999999999999999998665 455 999999999999999 89999999999999999999998888887543
Q ss_pred E-EEeeeeeCCceEEEEEe---cCCeEEEEECCCCCceEEe--cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 489 Y-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 489 ~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
. .+.| -.+|.++.+|. .++.+-+||..+.+....+ ......|.---+.+|...++.++ .|++.|+.|.+
T Consensus 219 ~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyEi 293 (472)
T KOG0303|consen 219 PARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFEI 293 (472)
T ss_pred cceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEEe
Confidence 2 2223 34566444442 4678999998776553322 22344666667889999999887 56888999998
Q ss_pred CCCce-eEEEeccccccccEEEEEEeCC
Q 001386 563 SEGAI-KRTYQGLQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 563 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~ 589 (1088)
..... ++-+.... ...+-..+.|.|.
T Consensus 294 t~d~P~~hyln~f~-S~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFS-SKEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEecccc-cCCcccccccccc
Confidence 76553 22222211 1234455666664
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-16 Score=144.63 Aligned_cols=290 Identities=12% Similarity=0.126 Sum_probs=199.6
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
.|.+-+++|.+++++++..+|.|.+..+..-..... -..|+..+ .+.++|+.++..++|. ..+|++
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~i---v~eqahdgpiy~~~f~--d~~Lls 77 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKI---VPEQAHDGPIYYLAFH--DDFLLS 77 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcce---eeccccCCCeeeeeee--hhheee
Confidence 344567899999999999999999998764322110 11122111 2224699999999997 457888
Q ss_pred EeCCcEEEEEcCCcee------EEEec-------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc
Q 001386 816 ASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 882 (1088)
Q Consensus 816 ~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~ 882 (1088)
+.||.|+-|..+.... ..... ..-..|.++-..|..+.++. ++.|+.++-||+++|+...+++||+
T Consensus 78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEEcCCc
Confidence 8899999987654222 11111 12357899999995555554 5589999999999999999999999
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
+-|.+++--.....+.||++||++|+||.++++.....-....+......-.-+-.+..-+..+|++|....+.+|.+..
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrs 236 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRS 236 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccC
Confidence 99999998555567889999999999999997644322111111111000012235666778899999999999999999
Q ss_pred ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEE
Q 001386 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1042 (1088)
Q Consensus 963 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l 1042 (1088)
.++...+.. .+++..+.|-.| .+++++..+.|.-|.+. |.+...+.... ...+..+...+| =+++
T Consensus 237 se~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s--------~~c~s~s~~~~p--~k~~ 301 (325)
T KOG0649|consen 237 SESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVES--------TACYSASWQTSP--IKFI 301 (325)
T ss_pred CCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCc--------cceeeecccCCc--eEEE
Confidence 988877543 577888888654 77788888899999875 66555544111 112333344556 2566
Q ss_pred EEEeCCCcEEEEe
Q 001386 1043 AVGLTNGEVYVIE 1055 (1088)
Q Consensus 1043 ~~~~~dg~v~~w~ 1055 (1088)
-.++..+.+.++.
T Consensus 302 s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 302 SIAGFSNKLHILK 314 (325)
T ss_pred Eecccceeeeeee
Confidence 6777777777753
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-16 Score=158.43 Aligned_cols=497 Identities=12% Similarity=0.170 Sum_probs=287.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE--CCCCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS 409 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~--s~dg~ 409 (1088)
-|+..|.|+.|+.+.. ++.++++ ..+.+|.-.+........+. ..|-.. ..| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~dD-h~~~~~~~~~~~s~~~~~~p--------~df~pt--~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSDD-HQIFKWSDVSRDSVEVAKLP--------DDFVPT--DMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEeccC-ceEEEeecccchhhhhhhCC--------cccCCc--ccc---ccccccCCCCCcc
Confidence 5666788999999887 5555544 55555544333222111100 000000 001 000000 01235
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
.++.++.||.+.+-+-.. +.-+ ....|.+.|.+-.|+|||. -|++++.||.|++|. ++|....++.....+|.
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 678888999888876543 2222 5779999999999999999 899999999999998 88877777777888999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
|++|.|+.+ ..+++.+ +.+.+=-+...........|.+-|.++.|++....+++++. +....+||.. |..+.
T Consensus 150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLF 221 (737)
T ss_pred EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccccc
Confidence 999977654 3444433 55666666767777888999999999999999999999986 6669999965 55555
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
.-..|. .+|++++|+|+ ..++.++. .++| +.. .....|..++||+||..+++|+..|.+.+-
T Consensus 222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 555555 89999999999 55555553 2333 211 223468999999999999999999988764
Q ss_pred eCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecC
Q 001386 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729 (1088)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 729 (1088)
-.-..+... +..-++......|.+-++.. ..+..+.+
T Consensus 284 ~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~---~v~d~LE~- 320 (737)
T KOG1524|consen 284 YAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVAT---GVQDILEF- 320 (737)
T ss_pred eeehhhhhh---------------------------------------ccceeEeeccceEEeehhhh---hHHHHhhC-
Confidence 332221110 11111111112222222211 11111221
Q ss_pred CccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC
Q 001386 730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 809 (1088)
Q Consensus 730 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1088)
..++...+.+. .+|+++.+ ..+++|.-..-. ++.+.|.+.+. +.-+.- .
T Consensus 321 ----p~rv~k~sL~Y--~hLvvaTs-~qvyiys~knwn-------tpiiidgre~t---------------r~lieq--~ 369 (737)
T KOG1524|consen 321 ----PQRVVKFSLGY--GHLVVATS-LQVYIYSEKNWN-------TPIIIDGREDT---------------RNLIEQ--G 369 (737)
T ss_pred ----ccceeeeeece--eEEEEEec-cEEEEEecCCcc-------CcEEEeccccc---------------hhHhhh--h
Confidence 22344433322 23333332 245554311100 11111111111 000000 1
Q ss_pred CCEEEEEeCCcEEEEEcCCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEE--eCCCeEEEEEc-CCceeee--eec
Q 001386 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS--KLE 879 (1088)
Q Consensus 810 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg--~~dg~i~lwd~-~~~~~~~--~l~ 879 (1088)
.+++......+|.+|..+ |+.......+...+ ..+... ...|+.- .....+.+||. .+|+... .+-
T Consensus 370 ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgDgk~L 445 (737)
T KOG1524|consen 370 EKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGDGKSL 445 (737)
T ss_pred hhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCCcccc
Confidence 123333334457777665 33332222222211 233333 2244432 23347788998 6776552 222
Q ss_pred cccCCeeEEEEC----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeE
Q 001386 880 GHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 955 (1088)
Q Consensus 880 ~h~~~V~~l~~s----~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i 955 (1088)
.|...|..++.. ++.+.++.-...+.+.|=.+++-... .+.++ .+..|..++|+...+.|.--.|+.+
T Consensus 446 ~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~K-------iGTmVhtLawndttNiLcglqDt~f 517 (737)
T KOG1524|consen 446 RHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIYK-------IGTMVHTLAWNDTTNILCGLQDTCF 517 (737)
T ss_pred chhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhhh-------hhhhhhhhhhccccceeeeeccceE
Confidence 366777777764 45688888888888888777652211 11111 1235788999988888877899999
Q ss_pred EEEEcCc
Q 001386 956 AIYEAEE 962 (1088)
Q Consensus 956 ~vwd~~~ 962 (1088)
.||=...
T Consensus 518 sVWy~pn 524 (737)
T KOG1524|consen 518 SVWYYPN 524 (737)
T ss_pred EEEEcCC
Confidence 9997653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-18 Score=193.45 Aligned_cols=251 Identities=14% Similarity=0.154 Sum_probs=197.1
Q ss_pred CceeeeecCCCCe---EEEEEcccCcEEEEecCCC---cceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 336 ~V~~v~~spdg~~---lla~g~~dg~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
.-..++|.+.|.. ++|.|..||.|.+||...- .... .......|.+.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCC
Confidence 6678899888775 6999999999999998762 1110 0011566999999999999655
Q ss_pred -EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc--
Q 001386 410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 486 (1088)
Q Consensus 410 -~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-- 486 (1088)
+||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..+.+
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998754322110 1124568999999988776 799999999999999999988877766654
Q ss_pred cEEEEeeeeeCCceEEEEEecCC--eEEEEECCCCCc-eEEecCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEEeC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
.+..+.|+|+...+++++...|+ .|.+||++.... ..++..|...|.++.|++.+ ++|++++. ++.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 47788999886654444444443 499999987654 55677999999999999977 77778765 556999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCe
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++++.+..+.... +.+..+.|.|... .+++++-||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999988755 8899999999877 67778999999999987654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-17 Score=160.02 Aligned_cols=303 Identities=12% Similarity=0.103 Sum_probs=214.8
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+..-+.+|.+.|.++.||.+|+ +||+|+.|..+++|++..--..++. ++++ ..-..|...|.|++|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~-----------KPI~-~~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTP-----------KPIG-VMEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCC-----------CCce-eccCccccceEEEEEc
Confidence 4456789999999999999998 7999999999999999753222210 0111 0133477999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-e--eEEec
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSFE 482 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~--~~~~~ 482 (1088)
...++|.+|..+++|.+-|+++.+.+... .-....+.|..+..+|-.+ .+++.+.++.|.+||.+... . +..+.
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeec
Confidence 99999999999999999999998755421 1112334899999999977 79999999999999987654 2 22333
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE-------ecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
.......++-|+|.. -.+|++.+..+-+.+||.+....... +......-.++.|+|+|..+.+.-. ..
T Consensus 192 N~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~ 266 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GK 266 (609)
T ss_pred CCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cC
Confidence 344566777787653 36889999999999999987654321 1111223467889999999887643 22
Q ss_pred eEEEEeCCCCceeEEEecccc----ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC---------------------
Q 001386 556 FLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--------------------- 610 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--------------------- 610 (1088)
.-.+||.-+.++...-..|.. ....+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 244567665433222122221 11356778887664 4999999999999987531
Q ss_pred --eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 611 --QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 611 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.+..+.+|. ..++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 346 i~~~~~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 346 IEKELTVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecceeEEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence 1233455443 357899999999999999999999999754
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-18 Score=173.54 Aligned_cols=302 Identities=16% Similarity=0.218 Sum_probs=234.8
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+...|.+|.+.|..|.|...|. +|++|+.|..|.+||+.++.....+ ..||...|....|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 45567889999999999999998 7999999999999999999876431 5689999999999
Q ss_pred CC--CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-
Q 001386 405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1088)
Q Consensus 405 s~--dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~- 481 (1088)
-| +.+-+++++.||.+++=.+.....+.....+..|.++|.-++.-|+..+ .+.+++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 98 5678999999999999877655444444467889999999999999887 7899999999999999887654333
Q ss_pred --ccCCc---cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce------EEec------CCCCceEEEEEccCCCEE
Q 001386 482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDYD------APGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 482 --~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~s~~g~~l 544 (1088)
..+.. ...+++..|. +...+++++.|..+++||.+..... ..+. ...-.|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22233 4567777665 3458999999999999998754322 1111 223368999999766655
Q ss_pred EEEeeCCCCceeEEEEeCCC--C----------ceeEE-EeccccccccEEEEE-EeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 545 FSCGTSKEGESFLVEWNESE--G----------AIKRT-YQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~--~----------~~~~~-~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
++... +..|+++.... | ..++. ++||... ..|..+- |.|...++++|+.-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 55543 34488885432 2 22333 7888732 3466665 5788999999999999999999999
Q ss_pred eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+.+..+.+..+ .|+|+.-+|--..||+.+-|..|+||.-.+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99998887766 5899999999999999999999999987543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-17 Score=169.20 Aligned_cols=246 Identities=13% Similarity=0.175 Sum_probs=172.1
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+.+.|.||++.|.|++|+.||. +|++||.|-.+.|||.-..+.+.. +-+||.+.|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 4467899999999999999999 899999999999999987776653 257899999999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-------cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 406 ~--dg~~las~~~dg~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
| +.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.+ .+.+++.||+|+-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 67889999999999999998522 12333456789999999999999966 89999999999999997532
Q ss_pred -eeE---------EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE----E-ecCCCCceEEEE-EccC
Q 001386 477 -RTY---------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----D-YDAPGLGCTRMA-YSAN 540 (1088)
Q Consensus 477 -~~~---------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~-~~~~~~~v~~~~-~s~~ 540 (1088)
|-. .+...--...++.++|. +..+|+.|+.|-..++||.+...... . ...+...+.|+. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 111 11111133566777766 34799999999999999953211110 0 001111122222 2222
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
+- . ...|...... ..++-+.|+|+|.-++..-....|+++|+..++....+.
T Consensus 261 hl----k--------------n~~gn~~~~~-------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 261 HL----K--------------NSQGNLDRYI-------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cc----c--------------Ccccccccce-------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 21 0 0001110000 235677899999888887667789999998877665543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=155.85 Aligned_cols=308 Identities=16% Similarity=0.176 Sum_probs=199.0
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
...+++|. ..++++.|..++ ++++|..-|.|.+|++.+.+....+..++. ..|..+.--|+ ..+.+-+.|+.+.
T Consensus 7 ~fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEE
Confidence 34455666 889999998765 599999999999999999988888875543 25777777776 4678888999999
Q ss_pred EEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeee
Q 001386 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 727 (1088)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 727 (1088)
+|++..+..+... .-.++++.|.+....... .+....++.-+..... +-..+.+...+.....
T Consensus 81 lw~ia~s~~i~i~---Si~~nslgFCrfSl~~~~-------------k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 81 LWTIAYSAFISIH---SIVVNSLGFCRFSLVKKP-------------KNSEQLLEYPSRGSDE-THKQDGGDTTQVQIAD 143 (323)
T ss_pred EEEccCcceEEEe---eeeccccccccceeccCC-------------CcchhheecCCcccch-hhhhccCccceeEccC
Confidence 9999875433322 222233333322111100 0000111111110000 0001111122222222
Q ss_pred cCCccccccEEEEEEe-cCCc--eEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE
Q 001386 728 LPSKVKANKISRLTYN-NGGQ--AIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 728 ~~~~~~~~~i~~~~~s-~~g~--~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1088)
-+.....+.+.+..+. .++. .+++|..+|.+.+||+..+..... -+..|.+.. +...|..+|.++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~---~~~~~kv~~---------~~ash~qpvlsl 211 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ---LPQSSKVES---------PNASHKQPVLSL 211 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec---ccccccccc---------chhhccCcceee
Confidence 2223344555555432 2222 356777899999999987643111 112222221 122488999999
Q ss_pred EEecCCCEEEEEe-CCcEEEEEcCCc--ee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001386 805 ALSKNDAYLFSAS-GGVISLYIVMTF--KT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 805 ~~s~dg~~l~~~~-dg~i~iwd~~~~--~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
.+.+.-..=++++ +..+..|+++.. .+ ...+......+..+.+-| |++++|+++.||.|+||+.++...+..++
T Consensus 212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLk 290 (323)
T KOG0322|consen 212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLK 290 (323)
T ss_pred eechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhh
Confidence 9987555555555 667888887632 22 223333456788899999 89999999999999999999999999999
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEc
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 911 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~ 911 (1088)
-|++.|++++|+||...+|.+|.|++|.+|++
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999986
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=156.34 Aligned_cols=294 Identities=17% Similarity=0.195 Sum_probs=198.8
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeec-CCCCCeEE
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 401 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~ 401 (1088)
|..-...|++|.+.|+++.|-.+++ |.+|...|.|++|++.+...+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 3344567789999999999999986 78899999999999999876543 33 37788999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC-----CCcE--EEEEEeCCC-cEEEEeCC
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-----CKQI--SVITCGDDK-TIKVWDAV 473 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----~~~l--~l~s~s~d~-~i~vwd~~ 473 (1088)
+.--|+ +.|.+-+.|+.+.+|++..+..+ ..|+-.++++.|.+- ++.. .++.-+... .+.+-|..
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 998887 56777789999999999876533 245555666666542 2110 111111000 01111211
Q ss_pred CCceeEEe----ccCCccEEEEeeeeeC-CceEEEEEecCCeEEEEECCCCCceE----------EecCCCCceEEEEEc
Q 001386 474 TGSRTYSF----EGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTRMAYS 538 (1088)
Q Consensus 474 ~~~~~~~~----~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~v~~~~~s 538 (1088)
....+... .+..+.+.+..+.... ..-++++|..+|.|.+||+.++.... ....|..++.++.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya 214 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA 214 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence 11111111 1123445555432221 22367788889999999999874333 334566788899888
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCC--CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE
Q 001386 539 ANGRRLFSCGTSKEGESFLVEWNES--EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1088)
Q Consensus 539 ~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1088)
+.-..=++++. ...+..|++. ++.+.... .+...+..+..+..-||++.+++++.|+.||||+.++.+++..+
T Consensus 215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~-e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRK-EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred hhhcCCcCCCc----cccceeeeeccccCcccccc-eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 75555555544 3336666654 23321111 11111356888899999999999999999999999999999999
Q ss_pred eCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
..|.. .|++++|+|+..++|.++.|+.|.+|++
T Consensus 290 kyHsa--gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSA--GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhc--ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 98864 6999999999999999999999999986
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=174.50 Aligned_cols=261 Identities=15% Similarity=0.203 Sum_probs=195.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEcc-----CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
.+..|...|+.++|.|-...|++++.||++.+|++. ....+.++.++++|.++|.|++++++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477799999999999999999999999999999992 3344677889999999999999999999 899999999
Q ss_pred cEEEEeCCC------C----ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC--ceE
Q 001386 466 TIKVWDAVT------G----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT 533 (1088)
Q Consensus 466 ~i~vwd~~~------~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~ 533 (1088)
+|+.|++.. . .....+.||.+.|+.++++..++ .|++++.||+++.|+...... ..+..... --.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996541 1 22357889999999999977664 799999999999998765554 23322222 223
Q ss_pred EEEEccCC-CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc----cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 534 ~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
++.+.... ..+++... .+.-.+.+...+..+..+.... .....+..+.++|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 11222111 1112233444444444443221 112457788899999999999999999999999
Q ss_pred CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 001386 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
+++++.....+. ..+.++++.|+|.+|++++.|+.+++|.+....+......
T Consensus 520 ~~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 520 TGKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred ccccchheeecc--ceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 999998887663 4689999999999999999999999999987665554433
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-15 Score=163.51 Aligned_cols=202 Identities=12% Similarity=0.129 Sum_probs=129.5
Q ss_pred eEEEEecCCCEEEEEe--CCcEEEEEcCC-c---eeEEEecCCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEEcCCcee
Q 001386 802 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~sp~d~~~la-sg~~dg~i~lwd~~~~~~ 874 (1088)
..++++|+++++++++ ++.|.+|++++ + +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3566777777666665 56677777753 2 1222222 223466788999 677664 555679999999986332
Q ss_pred ee-------eeccccCCeeEEEECCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeecCCCCccCCCCeEEEEEcCCC
Q 001386 875 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 944 (1088)
Q Consensus 875 ~~-------~l~~h~~~V~~l~~s~dg~~las~s~-Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg 944 (1088)
+. .... ......++|+|||++|+++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988876 89999999984 3322222222211111111123468999999
Q ss_pred CEEEEE--eCCeEEEEEcCcce----eeeeeecCCCcCEEEEEEeeCCCEEEEEeC-CCcEEEEEcC--CCce
Q 001386 945 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS--NLEV 1008 (1088)
Q Consensus 945 ~~l~~~--~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~-dg~v~vwd~~--~~~~ 1008 (1088)
++++++ .++.|.+|++.... .+..... ......+.|+|||++|+++.. +++|.+|+++ +|.+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 999996 45789999986433 2222222 234557899999999998775 8999999874 4543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=156.44 Aligned_cols=296 Identities=11% Similarity=0.082 Sum_probs=209.7
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCC---CcccceeEe-ccCCCCEEEEEecCCCCcEEEEEEeCCCc
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG---SDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~---~~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~s~d~~ 466 (1088)
-+.+|.+.|.++.||.++++||+|+.|..+++|+++.- +..+++... ..|...|.|++|...++ .+.+|+.+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 37789999999999999999999999999999998632 111222111 24668999999998888 8999999999
Q ss_pred EEEEeCCCCceeEEecc--CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccCC
Q 001386 467 IKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g 541 (1088)
|...|+++.+.+..+.. ..+.|+.+..+|.. ..+++.+.+|.|.+||.+.... .+..........++.|+|..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999998887753 34589999988763 5899999999999999987652 33344445578889999988
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCce-eEE---EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee-EEE
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTI 616 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~ 616 (1088)
..|+....... -+-+||.+.... +.. +.+.......-.++.|+|+|+.+++.-....-.+||+-+.++. ..+
T Consensus 207 P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 207 PALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 77666554332 378899875432 111 1222211123466789999999998776666677887764432 222
Q ss_pred eCCC----CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC-----------------------cccccccccCccee
Q 001386 617 DAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESN-----------------------SVDAAGVLSDNLRK 669 (1088)
Q Consensus 617 ~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~v~~ 669 (1088)
.... ....+.+++|-.|- .+++|+++-.|++|.+.... .+..+++|..-+..
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 2111 12235677776554 59999999999999987431 23344555555555
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
+.|+ +...++++.+-.+.+++|...
T Consensus 363 VRF~----------------------~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 363 VRFS----------------------QHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeec----------------------CCcceEeccchhhheeccccc
Confidence 5555 567778888888999999843
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=141.81 Aligned_cols=283 Identities=17% Similarity=0.204 Sum_probs=193.9
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|.+-++||.++ +|+.|..+|+|.+..+.+-..-.. ............+|.++|..++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 577778999998 799999999999999864211100 000011111247899999999998 55677764
Q ss_pred CCCEEEEEEccCCCc---ccceeE--eccCC-----CCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 416 SKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
||.|+=|....... .+...+ ...|. -.|+++...|..+ -++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 111111 11232 2588898988877 46666689999999999999999999999
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC--------ceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
..|.++.-.. ....+++|+.||++|+||.++.+....+....+ .-.-.+..-+..+|++|+. ..+
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-----p~l 229 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-----PKL 229 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-----Cce
Confidence 9999987632 234799999999999999999988776544322 1112455567789998864 339
Q ss_pred EEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC-CE
Q 001386 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-TL 636 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~ 636 (1088)
.+|+++..++...+.-.. .+..+.|.. +.++++++.+.|.-|.+. |......+.... ...+..++... ++
T Consensus 230 slwhLrsse~t~vfpipa----~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPIPA----RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred eEEeccCCCceEEEeccc----ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 999999999888877543 677777764 578888888889999874 444444443322 23444444332 34
Q ss_pred EEEEeCCCcEEEE
Q 001386 637 LAVIANENRIKIL 649 (1088)
Q Consensus 637 l~~~~~dg~i~iw 649 (1088)
+-.++....+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 5555555666654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-14 Score=145.15 Aligned_cols=242 Identities=11% Similarity=0.142 Sum_probs=186.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
...+..+.|+.|...|..|+.|| -++|..+.-.... ........|.-+-|+. ..+.+++...-+.+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC
Confidence 34677788999999999999999 6888877543211 1112223455566664 3223444433345999999999
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC---CCceEEEEEccCCCEEEEEeeCCC
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
..+..+. ...+|.++.+. .+.|+..-.+. |.|||+++.+...++... ...+..+++++.+.+++.-+..
T Consensus 79 ~~ICe~~-fpt~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-- 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-- 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC--
Confidence 8888776 56678888873 34566655544 999999998887766543 3356666667777799876542
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc-EEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
..+.|++||..+-+.+..+..|. +.+.+++|+++|..++++++.|+ |||+.+.+|+.+..++.......|.+++|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 25569999999999999999888 99999999999999999999997 699999999999999876656678999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 001386 632 KNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
|++++|++.++.++|.++.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998854
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=171.00 Aligned_cols=269 Identities=14% Similarity=0.190 Sum_probs=192.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
.+|..|.+.|++++|+|-.. .|++++.||++.+|+++....-.. ...-+-..+.+|.++|-|++.+++
T Consensus 288 ~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~-----------~~~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAE-----------KDVEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred eeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccc-----------cceeeeEEEecccCceEEEEecCC
Confidence 38889999999999999988 699999999999999943111110 011112238899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCc-------ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
+..+.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||+++.|+...... .+
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cc
Confidence 99999999999999997652211 112235779999999999999888 699999999999999766655 44
Q ss_pred eccCC--ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-------CCceEEEEEccCCCEEEEEeeCC
Q 001386 481 FEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 481 ~~~~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.... +.-.++.+..+. -...++...-+.--+.+++.......+... ...+..+...|.+...+++..
T Consensus 433 f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-- 509 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-- 509 (577)
T ss_pred cCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc--
Confidence 43222 222333332111 011222222222333333333333332221 124667788888888888765
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
+..|+++|..++..+.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 --d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 --DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred --CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 5569999999999999998888 89999999999999999999999999999776666554433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-16 Score=147.47 Aligned_cols=289 Identities=18% Similarity=0.263 Sum_probs=205.6
Q ss_pred eecccCCCCceeeeec--CCCCeEEEEEcc----cCcEEEEec--CCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 328 QTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~s--pdg~~lla~g~~----dg~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
.++..+- .+.++.|| |+.+..||.|+. .+.|.|-.+ .+++.+... -..|.-++
T Consensus 39 y~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~YP~ 99 (364)
T KOG0290|consen 39 YTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPYPV 99 (364)
T ss_pred EEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCCCc
Confidence 3444444 77888888 667778999986 245555544 344433221 13588999
Q ss_pred EEEEECCCC-----CEEEEEeCCCEEEEEEccCCC-cccceeE-----eccCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 400 NRVVWSPDG-----SLLGVAYSKHIVQLYAYHGGS-DARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 400 ~~l~~s~dg-----~~las~~~dg~i~vwd~~~~~-~~~~~~~-----~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
+.+-|.||. ++||++ .| .+++|.+...+ .+..... -..+.+++++..|+.-..+ ++.++|-|-+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs-~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATS-SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhcc-cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 999999987 356664 33 49999998422 1111111 2245678999999987666 899999999999
Q ss_pred EEeCCCCce---eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCC--CCceEEEEEccC-C
Q 001386 469 VWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSAN-G 541 (1088)
Q Consensus 469 vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~--~~~v~~~~~s~~-g 541 (1088)
|||+++|.. ...+-.|...|..++|.. +....+++.+.||.||++|++..+... .+..+ ..+...++|++. -
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999998743 567788999999999975 344689999999999999999876533 33333 346778888884 4
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCee------e
Q 001386 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------L 613 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------~ 613 (1088)
+++|+...+ ...|.+.|++. ...+..+++|. ..|+.++|.|.. ..++++++|..+.+||+...-. +
T Consensus 256 nymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 256 NYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred hHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 667766543 34589999985 45778888888 999999999974 6788899999999999976322 1
Q ss_pred EEEeCCCCCCCCceEEEec-CCCEEEEEeCCCcEEEE
Q 001386 614 TTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKIL 649 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw 649 (1088)
.... ....|+.+.|++ .+..++++.. +++.+.
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 1121 223689999996 5667777664 355443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-18 Score=182.14 Aligned_cols=288 Identities=15% Similarity=0.232 Sum_probs=225.5
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
+.++.+.+|. ..|.|+.|...|.++++|+.|..++||.++++.++....+|.+ .++.++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 4455666777 8999999999999999999999999999999999999998765 6999999999999999999999
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
|++|.+..+.++..+++|.+.|++++|+|. .+.+.||++++||..... ....
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~--------------------------~sss~dgt~~~wd~r~~~--~~y~ 307 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------------------------ASSSDDGTCRIWDARLEP--RIYV 307 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc--------------------------ccCCCCCceEeccccccc--cccC
Confidence 999999999999999999999999999974 256778999999965110 0000
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 805 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1088)
-.-+.......+.++.|..++..+.+++.++.-..|.+..-.. +...+.-+.
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~----------------------------~~~~lif~t 359 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW----------------------------RSNLLIFVT 359 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh----------------------------hccceEEEe
Confidence 0001112335677788888899999999998888776542211 111111122
Q ss_pred EecCC-CEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-cccc
Q 001386 806 LSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS 882 (1088)
Q Consensus 806 ~s~dg-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l-~~h~ 882 (1088)
.+.|- .+.+++- +-.+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+..|..++.. .+|
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh- 438 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH- 438 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-
Confidence 22222 3344443 6679999999999999999999999999999988888889999999999999988766544 455
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~ 915 (1088)
+.+..-+||+||..++....-|.+.|.....++
T Consensus 439 ~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 439 GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 556778999999999988888989888776544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=155.70 Aligned_cols=292 Identities=13% Similarity=0.175 Sum_probs=200.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CCC-CceE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 533 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~-~~v~ 533 (1088)
.++++-..|.|++||..+|+.+..++++...++.+.|......+.+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 5777888999999999999999999999999999999775566789999999999999999877654433 332 3566
Q ss_pred EEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce-eEEE-eccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCC
Q 001386 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTY-QGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 534 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+++..-.++.++++..-...+..+.+||.+..+. ++.+ ..|. +.|++++|+|.. +.|++||.||.|.+||+...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6666667888888876666678899999997765 4444 3444 899999999964 68889999999999998764
Q ss_pred e----eeEEEeCCCCCCCCceEEEecCC-CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccC
Q 001386 611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1088)
Q Consensus 611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 685 (1088)
. ++.++.. ...|.++.|..++ +.+.+-+..++..+|+++.+.....+........... . ...
T Consensus 199 ~EeDaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r-~---------~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR-K---------EDN 265 (376)
T ss_pred cchhhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH-h---------hhh
Confidence 2 2233332 2348889999877 4588888899999999998865443332111000000 0 000
Q ss_pred CceeecCCCCCCCCccccccc-CccceeccccccC-CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFAR-PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
..-.++.....++...+.++. .+...++-+.... ............+|..-|+++.|...+..+.+|+.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 000111111223333333333 4555555533211 11222233344457777888999999999999999999999986
Q ss_pred c
Q 001386 764 P 764 (1088)
Q Consensus 764 ~ 764 (1088)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-16 Score=154.13 Aligned_cols=275 Identities=14% Similarity=0.163 Sum_probs=193.1
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--CCCEEEEEeCCCEEEEEEcc
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 426 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--dg~~las~~~dg~i~vwd~~ 426 (1088)
.+|++-..|+|+|||..+|+.+.. +++|...+..++|.. ....+.+++.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 678888889999999999988866 677888888999987 46788999999999999999
Q ss_pred CCCcccceeEeccCC-CCEEEEEecCCCCcEEEEEEe----CCCcEEEEeCCCCce-eEEe-ccCCccEEEEeeeeeCCc
Q 001386 427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 499 (1088)
Q Consensus 427 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s----~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 499 (1088)
+......+ .+.+|. .+..+++-...++ .+++|. .|-.|.+||++..+. +..+ ..|...|+++.|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87654433 355665 4667777765666 566664 356799999998766 5444 679999999999997 44
Q ss_pred eEEEEEecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 500 HFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
.+|++||.||-|.++|+..... ......+...|.++.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 7999999999999999976533 22333456679999999988 33444443 3348999998887655444321
Q ss_pred cc----------cccEEEEEEeCCCCEEEEEeC-CCcEEEEEcC---CCe---eeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 576 LQ----------HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMN---KVQ---LLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 576 ~~----------~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
.. ..-|.+. ...++..++.++. -++..++-+. ++. .+..+.+ ++...|.++.|...+.++.
T Consensus 255 ~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred chhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence 00 0111111 1223344444433 5565555433 333 3333333 2334578888988899999
Q ss_pred EEeCCCcEEEEeCC
Q 001386 639 VIANENRIKILETP 652 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~ 652 (1088)
+|+.||.+.+|...
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999864
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-15 Score=146.84 Aligned_cols=241 Identities=11% Similarity=0.172 Sum_probs=187.1
Q ss_pred CCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceee
Q 001386 798 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 875 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~~~ 875 (1088)
...+..+.|..+...|..|+....++|..+..............|..+-||. .++|..+.+. .++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677788899999999977788888876655433444455677788876 3666666544 5999999988877
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-E--eC
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 952 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~--~d 952 (1088)
..+. -..+|.+|.++. +.|+++=.+. |+|||+++ .+.+...+........+..+++++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~-----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKD-----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEeccc-----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 445689999864 4566665544 99999998 4455555544333345777777778889998 3 45
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCccccccceE
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
|.|.|||+.+-+....+. .|.+.+.+++|++||.+|||+|..|+ |||+.+.+|+.+.+++.+.. + +...+
T Consensus 153 GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEEE
Confidence 889999999999888855 89999999999999999999999997 69999999999999985543 1 23456
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1032 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1032 ~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
++|+| |+.+|.+.+..++|++|.|....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999 89999999999999999996644
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-16 Score=149.41 Aligned_cols=228 Identities=13% Similarity=0.162 Sum_probs=177.0
Q ss_pred CCcEEEEEcCCcee---EEEecCCCCCeEEEEEcCCCCcEEEEEeCC-------CeEEEEEcCC---------ceeeeee
Q 001386 818 GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------STILIYNARS---------SEVISKL 878 (1088)
Q Consensus 818 dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-------g~i~lwd~~~---------~~~~~~l 878 (1088)
++.|.+.++..... -..|..|.+.|..++-+|.+.++|++...+ ..+.||.+.. -+++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 57788877765432 234667889999999999888899887664 2578998854 2345555
Q ss_pred c-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC--CCCEEEEEeCCeE
Q 001386 879 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLVHETHL 955 (1088)
Q Consensus 879 ~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~--dg~~l~~~~d~~i 955 (1088)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.............. .....++-+||| ||+.+++..|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence 5 4667999999999999999776 77899999998765433332222211 123578889998 8999999999999
Q ss_pred EEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE-EEEEeCCCcEEEEEcCCCceE-EEeccccccCCCCccccccceEEE
Q 001386 956 AIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSFVDGTLSIHEASNLEVQ-CRILSTAYLRPTTSCLHVYPHAIA 1033 (1088)
Q Consensus 956 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
..||+++..+...+..+|...|..+.|.|+.++ |++|+.||.|++||...-+.- .... ++.-+.-++.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~----------~HsHWvW~VR 265 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP----------GHSHWVWAVR 265 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC----------CCceEEEEEE
Confidence 999999999999999999999999999998865 789999999999998865432 2221 2234667799
Q ss_pred ECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1034 AHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1034 ~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
|+|...+++++|+.|..|.+|....
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccc
Confidence 9998889999999999999998743
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=145.33 Aligned_cols=183 Identities=17% Similarity=0.233 Sum_probs=130.4
Q ss_pred CeeEEEEec--CCCEEEEEeCCcEEEEEcCCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceee
Q 001386 800 AVPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI 875 (1088)
Q Consensus 800 ~v~~~~~s~--dg~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~ 875 (1088)
..++-+|+| ||..+++.+++++..||+.+.+....+. .|...+..+.|.|+...+|+++++||.|+|||.+. ...+
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred eecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 344456666 8999999999999999999887776664 67788999999996667899999999999999986 4578
Q ss_pred eeeccccCCeeEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCC
Q 001386 876 SKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 953 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~d-g~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~ 953 (1088)
..+.+|+.-|.++.|+|. .+++.|+|.|..|.+|...+-.... .+.|-.|..-.-. ....
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEE 313 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHH
Confidence 999999999999999984 4778899999999999877532111 1111111100000 0000
Q ss_pred eEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE-EEEEeCCCcEEEEEcC
Q 001386 954 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 954 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~s~s~dg~v~vwd~~ 1004 (1088)
+++ -+..| .+.+ +..|...|.+++||.-..+ +|+-+.||.+.|=.+.
T Consensus 314 r~k--pL~dg-~l~t-ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 314 RVK--PLQDG-QLET-YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred hcc--ccccc-cccc-ccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 111 01111 1122 4578999999999986665 5678899999886654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-14 Score=157.86 Aligned_cols=275 Identities=14% Similarity=0.198 Sum_probs=177.8
Q ss_pred eEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001386 348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1088)
Q Consensus 348 ~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~-~dg~i~vwd~ 425 (1088)
+++++...++.|.+||+.+ |+...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455667789999999974 33221111 1 1345677899999999987764 5778999999
Q ss_pred cCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCCcEEEEeCCC-Cc---eeEEeccCCccEEEEeeeeeCCce
Q 001386 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 500 (1088)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~ 500 (1088)
.....+...... ...+....++|+|+++ ++++++ .++.|.+||+.+ +. .+..+.+ ......+++ +++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~--~p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANI--DPDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEe--CCCCC
Confidence 732222211122 2334567899999999 455444 488999999874 32 2233332 233455666 44666
Q ss_pred EEE-EEecCCeEEEEECCCCCceEE------ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC--Cc--eeE
Q 001386 501 FIF-SISVDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 569 (1088)
Q Consensus 501 ~l~-s~~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 569 (1088)
+++ +...++.|.+||+++...... ....+.....++|+|+|++++++.. ..+.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 664 555679999999986432211 1122345678999999999988763 356799999873 33 233
Q ss_pred EEecccc---ccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCe----eeEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 570 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
.+..... +......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332210 112234688999999999985 47899999986532 22332221 1346799999999999887
Q ss_pred C-CCcEEEEeCC
Q 001386 642 N-ENRIKILETP 652 (1088)
Q Consensus 642 ~-dg~i~iwd~~ 652 (1088)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8899999875
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-15 Score=166.06 Aligned_cols=302 Identities=17% Similarity=0.193 Sum_probs=208.8
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC-CCCCCceEEEec--CCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
....+.|+|-...++++.+...|+|||.+.++.+..+..+. ....|..+.+-. |..++.+++.||.|+||+--....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45677899999999999988999999999999988876542 223466676654 556788888899999886432210
Q ss_pred ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccccc
Q 001386 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1088)
Q Consensus 657 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1088)
+...++++
T Consensus 1146 ----------------------------------------~~~eLVTa-------------------------------- 1153 (1387)
T KOG1517|consen 1146 ----------------------------------------KKPELVTA-------------------------------- 1153 (1387)
T ss_pred ----------------------------------------CCceeEEe--------------------------------
Confidence 00001111
Q ss_pred EEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-CCCEEEE
Q 001386 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFS 815 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~ 815 (1088)
|++=...+.+....|.+ +.|-. .|.++++
T Consensus 1154 -----w~~Ls~~~~~~r~~~~v---------------------------------------------~dWqQ~~G~Ll~t 1183 (1387)
T KOG1517|consen 1154 -----WSSLSDQLPGARGTGLV---------------------------------------------VDWQQQSGHLLVT 1183 (1387)
T ss_pred -----eccccccCccCCCCCee---------------------------------------------eehhhhCCeEEec
Confidence 00000001111111111 22222 3445555
Q ss_pred EeCCcEEEEEcCCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeeccccCC--eeEEE
Q 001386 816 ASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR--VTGLV 889 (1088)
Q Consensus 816 ~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~---~~~~~l~~h~~~--V~~l~ 889 (1088)
|.-..|+|||.........+. +....++++.-+...|+++++|..||.|++||.+.. ..+...+.|+.. |..+.
T Consensus 1184 Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 556779999998877776665 344678888776657899999999999999998764 356778889887 99999
Q ss_pred ECCCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeee
Q 001386 890 FSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 890 ~s~dg~~-las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~ 968 (1088)
+-+.|-- |++|+.||.|++||+.......... ...+...++..+++..+++...+|+|+.+.|.||++. |+.+..
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~---iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT---IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccCcccccce---eeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcc
Confidence 9987754 9999999999999998742221111 1122211224899999999999999877999999987 444333
Q ss_pred ee------cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 969 WF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 969 ~~------~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
+. ....+.+.|++|.|---+||+|+.|.+|.||....+.
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 22 1225678999999999899999999999999877654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-15 Score=164.06 Aligned_cols=299 Identities=14% Similarity=0.180 Sum_probs=210.3
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--C
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--d 407 (1088)
+.+....-..+.|+|-.. .++++...-.|+|||.+.++.+..+.- -......|+.+.+-. |
T Consensus 1060 ~~~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D 1122 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQD 1122 (1387)
T ss_pred HhcCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccc
Confidence 344444677888999887 577777678999999999988754221 112346789999876 6
Q ss_pred CCEEEEEeCCCEEEEEEcc-CC-Ccccc---eeEeccC----CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 408 GSLLGVAYSKHIVQLYAYH-GG-SDARQ---QLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~-~~-~~~~~---~~~~~~h----~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
..++.+|+.||.|+||+-- .+ +..+. ...+.++ .+.=.-+.|..... .|+++|.-..|+|||.....+.
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeE
Confidence 7789999999999999643 22 11111 1112121 11113456776666 5666666889999999988888
Q ss_pred EEecc-CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecCCCCc--eEEEEEccCCCE-EEEEeeCC
Q 001386 479 YSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSK 551 (1088)
Q Consensus 479 ~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~--v~~~~~s~~g~~-l~~~~~~~ 551 (1088)
+.+.. ....|+++.-.-. .|..+++|..||.|++||.+.... +.....|... |..+.+-+.|-. |++++.+
T Consensus 1201 ~diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~- 1278 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD- 1278 (1387)
T ss_pred eecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC-
Confidence 77643 4455777755433 468999999999999999886543 4455666665 999999987766 8888764
Q ss_pred CCceeEEEEeCCCCceeEE--EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-----CCCCC
Q 001386 552 EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPE 624 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~ 624 (1088)
|.|++||++....... +..|...++.++++..+++...+++|+. +.|.||++.. +.+..+... .....
T Consensus 1279 ---G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1279 ---GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred ---CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCC
Confidence 4499999987422221 2222211235899999999999999998 9999999864 444444322 12345
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+.|++|+|-.-++|+|+.|..|.||.....
T Consensus 1354 ~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cceeeecchhHhhhhccCCceEEEeecCCc
Confidence 789999999999999999999999987754
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-16 Score=157.04 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=164.0
Q ss_pred eEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc
Q 001386 802 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 880 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~ 880 (1088)
.+++|+.+|..++++. ||++|+|+..+...+.....|...|.++.||| |+++|++-+.| ..+||++++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 99999999888888888888999999999999 89999999999 899999999977766553
Q ss_pred --ccCCeeEEEECCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCccCCCCeEEEEEcCCCCEEEE-Ee
Q 001386 881 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 951 (1088)
Q Consensus 881 --h~~~V~~l~~s~dg-----~~las~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~ 951 (1088)
.......+.|+.|+ ..++....-+.|+.|++..+..... +..+....+ ..|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 23346678888887 4444555667788888876543211 112222222 25999999999999999 58
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
||.|-+++..+.+++.-....|...|+.+.|+||.+++++.+.|....|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999988899999999999999999999999999999987765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-13 Score=150.12 Aligned_cols=318 Identities=10% Similarity=0.122 Sum_probs=200.7
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
++.|.+.|..+.+.+..+.... ..-..+.|+|||+++++++.||.|.++|+.+++.+.++..... ..++++|+|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence 5679999999999999998654 3345578999999999999999999999999999999986543 578999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 634 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
|++++++. ..+.+.++|..+.+.++.+......
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~---------------------------------------------- 122 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP---------------------------------------------- 122 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----------------------------------------------
T ss_pred CCEEEEEecCCCceeEeccccccceeeccccccc----------------------------------------------
Confidence 99998776 5899999999988776654321100
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecCCceEEEe-ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND 791 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1088)
......++..+..++....++.. -..+.+.+.|+..... +....
T Consensus 123 -----------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~------------------~~~~~ 167 (369)
T PF02239_consen 123 -----------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN------------------LKVTT 167 (369)
T ss_dssp -----------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC------------------EEEEE
T ss_pred -----------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc------------------cceee
Confidence 00023456677777777745444 4446665555433211 11111
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecC----CCCCeEEEEEcCC---------CCcEEE
Q 001386 792 TTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DNNVIA 856 (1088)
Q Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~---------d~~~la 856 (1088)
+ ..........|+|++++++++. .+.|.++|..+++.+..+.. |......+ .+|. .+...+
T Consensus 168 i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 168 I---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp E---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEE
T ss_pred e---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceec
Confidence 1 1344566789999999988875 67899999999988776542 22333322 1221 222332
Q ss_pred EEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 857 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 857 sg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
+.-....+.+||..+.+.+.++....++ .-+..+|+++++.+. ...++|.++|..+-+.. ..+....+
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~--~~i~~~~~----- 315 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV--KTITPGPG----- 315 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE--E-HHHHHT-----
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee--EEEeccCC-----
Confidence 2223345667899999999999987666 778889999999988 45588999999985311 11111111
Q ss_pred CCeEEEEEcCCCCEEEEE---eCCeEEEEEcCcceeeeeee
Q 001386 933 PSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~~---~d~~i~vwd~~~~~~~~~~~ 970 (1088)
..+.++.|++||+++-++ .++.|.+||..|.+.+..+.
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 138899999999988774 33489999999999988754
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-15 Score=166.97 Aligned_cols=235 Identities=13% Similarity=0.128 Sum_probs=162.6
Q ss_pred cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCccc
Q 001386 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 432 (1088)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~ 432 (1088)
+..|.|||....... . +..|...+.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998765422 1 55688899999999999999988654 469999999875322
Q ss_pred ceeEeccCCCCEEEEEecCCCCcEEEEE-EeCCCcEEEE--eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe-cC
Q 001386 433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 508 (1088)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s-~s~d~~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d 508 (1088)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |+.++. +..+..+...+....|+ +||+.|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence 2233344 34689999999 4554 4567766555 666655 45566677777777774 5677666544 67
Q ss_pred CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
|...+|+++..........+.. .+..|+|||+++++.+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8888998765433222222222 45789999999988764 23777999988765333222 234577999
Q ss_pred CCCEEEEEeCCCcEEEEEc--CCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+|++++.++.++.+.+|++ .+|+....+..+.+ .+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999999998888875 35777777765543 4778889874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-14 Score=160.58 Aligned_cols=256 Identities=13% Similarity=0.123 Sum_probs=181.4
Q ss_pred ecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEEccCC----CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc
Q 001386 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~d-g~~las~~~dg~i~vwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~ 466 (1088)
+..|...|..++.+++ +.++++||.||+|++||...- ...+...++..-..++.++.+.+.++ .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 6779999999998885 599999999999999998632 22333334444567899999999999 6888899999
Q ss_pred EEEEeCCC--Cce-----eEEeccC-CccEEEE-eeeeeCCceEEEEEecCCeEEEEECCCCCceE--EecCCCCceEEE
Q 001386 467 IKVWDAVT--GSR-----TYSFEGH-GAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRM 535 (1088)
Q Consensus 467 i~vwd~~~--~~~-----~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~ 535 (1088)
|++.+++. .+. .+....+ .+.+.++ ++........++.+..-+.|..||.+...... ......+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99999876 221 1111222 2334444 33322222478888899999999998876544 344556689999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC---CCEEEEEe--CCCcEEEEEcCCC
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 610 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~ 610 (1088)
+.+|-+.+++.|+. .|.+.+||++-+..+....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999975 6679999999888887766443 356766666553 34555544 5788999999999
Q ss_pred eeeEEEeCCCCCC-----------------CCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 611 QLLTTIDAGGGLP-----------------ENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 611 ~~~~~~~~~~~~~-----------------~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
.+...+......+ .....++...+..+.+|+.|..|+.||.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 7777665431110 11223333445688999999999999988654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=152.10 Aligned_cols=197 Identities=21% Similarity=0.212 Sum_probs=151.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 922 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~ 922 (1088)
.+++|++ +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++- .+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-----~~ 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-----AL 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-----hh
Confidence 7899999 89999999999999999998888888888899999999999999999999999 79999999973 22
Q ss_pred ecCCCCccCCCCeEEEEEcCCC---CEEE-E-E-eCCeEEEEEcCccee-----eeeeecCCCcCEEEEEEeeCCCEEEE
Q 001386 923 QTPDGVMTLAPSETHIQFHKDQ---TRFL-L-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 991 (1088)
Q Consensus 923 ~~~~~~~~~~~~v~~~~fs~dg---~~l~-~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~s 991 (1088)
+.... .........+.|+.|+ .+.+ + . .-+.|+.||+..... .++.. .....|++++.|+||++++.
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 22211 1111247788999888 3333 3 2 335677776654332 11111 22457999999999999999
Q ss_pred EeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 992 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 992 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
|+.||.|.|+++.+.+...-+. .. +....+.+.|+| |.+.+++.+.|.+..+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk------~a---H~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK------EA---HLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh------hh---heeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999888765443 11 224567899999 789999999999999999866
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-13 Score=149.99 Aligned_cols=322 Identities=13% Similarity=0.144 Sum_probs=199.6
Q ss_pred EEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccccc
Q 001386 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1088)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1088)
++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----N 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----E
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----C
Confidence 4456677899999999998888888776555556789999999999864 4579999999999999987644 5
Q ss_pred EEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCC-----CCCCceEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 001386 581 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVI-ANENRIKILETPE 653 (1088)
Q Consensus 581 v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~ 653 (1088)
...+++++||++++++. .++.+.++|.++.+.++.+..... ...+..+..+|....+++. -+.+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 78899999999999865 789999999999999998875422 2245567778877755544 4457777777664
Q ss_pred CCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccc
Q 001386 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1088)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 733 (1088)
.+.+.... +. .
T Consensus 160 ~~~~~~~~----------------------------------------------------------------i~-----~ 170 (369)
T PF02239_consen 160 PKNLKVTT----------------------------------------------------------------IK-----V 170 (369)
T ss_dssp SSCEEEEE----------------------------------------------------------------EE------
T ss_pred ccccceee----------------------------------------------------------------ec-----c
Confidence 32211000 00 1
Q ss_pred cccEEEEEEecCCceEEEe-ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE-------E
Q 001386 734 ANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF-------A 805 (1088)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~ 805 (1088)
........|+|++++++++ .....+-++|...... +..+..|.. .|..+...+ .
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~---------v~~i~~g~~---------p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL---------VALIDTGKK---------PHPGPGANFPHPGFGPV 232 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE---------EEEEE-SSS---------BEETTEEEEEETTTEEE
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceE---------EEEeecccc---------ccccccccccCCCcceE
Confidence 1233457888999887664 3456777777554322 111111211 122222222 1
Q ss_pred E--ecCCCEEEE-EeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEE----eCCCeEEEEEcCCceeeeee
Q 001386 806 L--SKNDAYLFS-ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 806 ~--s~dg~~l~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg----~~dg~i~lwd~~~~~~~~~l 878 (1088)
| +..+...++ .+.+.+.+||..+++.++++...... .-+..+| +++++.+. ...++|.|+|.++.+.+..+
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i 310 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI 310 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEE
Confidence 1 222233222 23456678999999999999977666 7888899 88898887 45589999999999888887
Q ss_pred cccc-CCeeEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeee
Q 001386 879 EGHS-KRVTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 879 ~~h~-~~V~~l~~s~dg~~las~s--~Dg~i~iwd~~~~~~~~~ 919 (1088)
.... ..+..+.|++||+.+..+. .++.|.+||..+.+....
T Consensus 311 ~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 311 TPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp HHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred eccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 6433 3589999999999766544 334799999999765443
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-14 Score=160.75 Aligned_cols=275 Identities=15% Similarity=0.185 Sum_probs=189.9
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.+..+.+|..|+..|..++.++...-++++||.||+|++||...-..-. ...+ | ...+..-+..+.++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r------S-----~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR------S-----ELTYSPEGSRVEKV 1104 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee------e-----eEEEeccCCceEEE
Confidence 3578899999999999999988774489999999999999986432110 0000 0 11133357899999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCC--Cccc--cee--EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGG--SDAR--QQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~--~~~~--~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
.+.+.|..+|+++.||.|++.+++-. +... ... ........|..-+|....+...++.+..-+.|..||+.+..
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 99999999999999999999998762 1110 000 11222223444466555443367778888999999998877
Q ss_pred eeEEec--cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-CCceEEEEEcc---CCCEEEEEeeC
Q 001386 477 RTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSA---NGRRLFSCGTS 550 (1088)
Q Consensus 477 ~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~---~g~~l~~~~~~ 550 (1088)
.+.+++ ...+.|++++.. +.+.+++.|+..|.+.+||++-+..+.....+ ..++..+..+| .....++++..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hHHhhhcCccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 665553 346789999984 46679999999999999999988777655433 24666666655 44566666542
Q ss_pred CCCceeEEEEeCCCCceeEEEeccc----------------cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQ----------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1088)
+.+.|.+|+..+|.....+.... .+.-....+++...+..+++|+.|..|+.||.......
T Consensus 1263 --~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1263 --SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred --CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 45669999999997776665431 00011223344445678899999999999998765443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-14 Score=157.33 Aligned_cols=250 Identities=17% Similarity=0.165 Sum_probs=183.1
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc--cc-eeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 395 h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~--~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
-...|.|++|+| +..++|.|..+|.|.+||+..+... .. ......|..+++.+.|..+-.+.-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 568999999999 7788889999999999999987652 11 1123468899999999775543358999999999999
Q ss_pred eCCCCce------eEEec------cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc--------eEEecCCCC
Q 001386 471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 530 (1088)
Q Consensus 471 d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~ 530 (1088)
+++.-.. ..... .-...++++.|.+. +-..++.|+.+|.|..-.-...+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12346788888765 445789999999988733222211 225566778
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCceeEEEeccccccccEEEEEEeCCCCE-EEEEeCCCcEEEEEcC
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~ 608 (1088)
+|+++.++|-+..++..+. +-+++||... ...++..+..+. ..+.+++|+|.... ++++..||.|.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998877766653 5669999987 555665666555 66999999998654 5557789999999987
Q ss_pred CCe--eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 609 KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 609 ~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
... ++.+.... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 543 33343333 345678889999999999999999999999743
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=162.59 Aligned_cols=231 Identities=18% Similarity=0.196 Sum_probs=152.9
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEccc---CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 396 (1088)
.+......+.|..|...+..++|||||++ ||..+.+ ..|++||+.+++...... +.+|
T Consensus 189 ~d~dg~~~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~- 249 (429)
T PRK01742 189 ADYDGFNQFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH- 249 (429)
T ss_pred ECCCCCCceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc-
Confidence 34445556778888889999999999996 4554432 479999999886432110 2233
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCEEEEE--EccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 397 VSVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~-~dg~i~vw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
...++|||||++|++++ .+|.+.|| |+.+++. . .+..+...+...+|+|||+. +++++..++...||++.
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMS 322 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEE
Confidence 34689999999998875 57765555 6666542 2 46667778889999999995 33445567888888765
Q ss_pred CC-ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 474 TG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 474 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
.. .....+ .+.. ....| +++|+.|+..+.++ +.+||+.++........ ....++.|+|||+++++++.++.
T Consensus 323 ~~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 323 ASGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred CCCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC
Confidence 32 222333 3433 33455 56778888887765 55599987765432222 23356789999999999875332
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1088)
...+.+++ .+|..++.+..+. +.+...+|+|-
T Consensus 395 -~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 395 -GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred -ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 22233343 3577778887766 67788888874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-14 Score=135.75 Aligned_cols=245 Identities=12% Similarity=0.220 Sum_probs=177.2
Q ss_pred cCCCCceeeeecCCCC----eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-
Q 001386 332 EGSSSPMSMDFHPVQH----TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~----~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~- 406 (1088)
.|.-+++.+.|.||.+ .+||+.+ ..+++|.+...+.... +........-..+.++++++.|+.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~----------~~~~L~~~kns~~~aPlTSFDWne~ 161 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE----------LQSVLNNNKNSEFCAPLTSFDWNEV 161 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee----------hhhhhccCcccccCCcccccccccC
Confidence 6777999999999873 3677755 6899999975321111 001111112445778999999998
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE---Eecc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---SFEG 483 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~---~~~~ 483 (1088)
|-++|.+++-|.+..|||+++|........+-.|...|..++|..++.. ++++.|.||.||++|++.-+--. +-..
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCCC
Confidence 8899999999999999999998542223357799999999999998877 89999999999999998755332 2222
Q ss_pred CCccEEEEeeeeeCCceEEEEEecC-CeEEEEECCCCC-ceEEecCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iw 560 (1088)
...+...++|+.. |-.++++-..| ..|.+-|++... ....+..|...|..++|.|.. ..|.+++. +.+..+|
T Consensus 241 ~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qaliW 315 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALIW 315 (364)
T ss_pred CCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEEE
Confidence 2566777887654 44677776666 459999998765 466889999999999999965 56666653 6779999
Q ss_pred eCCCCce------eEEEeccccccccEEEEEEeCC-CCEEEEEeC
Q 001386 561 NESEGAI------KRTYQGLQLQHNSVSVVHFDTA-KDQILAAGD 598 (1088)
Q Consensus 561 d~~~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~ 598 (1088)
|+.+.-. +-.+. ..+.|+.+.|++. +.+++.+..
T Consensus 316 Dl~q~~~~~~~dPilay~----a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAYT----AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ecccccccCCCCchhhhh----ccceeeeeeecccCCCEEEEEec
Confidence 9975422 11122 1367999999964 556666553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-11 Score=122.31 Aligned_cols=415 Identities=12% Similarity=0.122 Sum_probs=232.3
Q ss_pred CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-------eCCC
Q 001386 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-------YSKH 418 (1088)
Q Consensus 346 g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~-------~~dg 418 (1088)
|.+++.++..| +..+++.+|+..+ +..|-+-|+...|+|||+.+|.. ...+
T Consensus 50 GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~ta 107 (668)
T COG4946 50 GDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTA 107 (668)
T ss_pred CcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEecCCCccc
Confidence 55677777644 5555667776554 55688889999999999999983 2234
Q ss_pred EEEEEEccCCCcccceeEeccCCCCEEEE-EecCCCCcEEEEEEeCCCcEEEE----eCCC-CceeEEeccCCccEEEEe
Q 001386 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVW----DAVT-GSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~~-~~s~d~~~l~l~s~s~d~~i~vw----d~~~-~~~~~~~~~~~~~v~~~~ 492 (1088)
.+.+.+.+.|+..+. ++-| ...+.+ -|.|||+ ++++...-.-..-| -+.. |.....+ .-++.+.+.
T Consensus 108 Dly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv 179 (668)
T COG4946 108 DLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIV 179 (668)
T ss_pred cEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEE
Confidence 588888898875442 2223 344444 5999998 66665433222222 1111 1101111 112333332
Q ss_pred eeeeCCceEEEEEecCCe------------EEEEECCCCC-ceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 493 PHAKENIHFIFSISVDGK------------IKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~------------i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
+ .|| .++.|-..-. =++|--..+. .-..+..-.+.|.+-..-.+.-++++ +-+|-+.++-
T Consensus 180 ~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG~GnlYS 252 (668)
T COG4946 180 I---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEGVGNLYS 252 (668)
T ss_pred E---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccCccceEE
Confidence 2 133 2222211111 1223211111 11111111122222222222222222 3355666777
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC------CCCC----CCceEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG------GGLP----ENPRIC 629 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------~~~~----~v~~v~ 629 (1088)
-|+....+ +...... .-.+-..+.||+.++.. ..|.|.+||..+.+... +... ...+ +..-+.
T Consensus 253 vdldGkDl-rrHTnFt----dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyle 325 (668)
T COG4946 253 VDLDGKDL-RRHTNFT----DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLE 325 (668)
T ss_pred eccCCchh-hhcCCch----hccccccCCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhh
Confidence 77654332 2211111 12233356788877653 45789999988755332 2211 0000 000111
Q ss_pred -Eec-CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 630 -FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 630 -~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
|++ +|.+++..+. |...+.+...+..++
T Consensus 326 dfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq------------------------------------------------- 355 (668)
T COG4946 326 DFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ------------------------------------------------- 355 (668)
T ss_pred hhccCCCcEEEEEec-CcEEEECCCCCeeEE-------------------------------------------------
Confidence 333 5677777665 455554433221111
Q ss_pred ccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecccc-ceEEEEccCCCCCCCCCCCCcccCCCCCCc
Q 001386 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ 786 (1088)
Q Consensus 708 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1088)
.++...|.-..+..+++.++.+..|| .+-+++...+..
T Consensus 356 -----------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------------------ 394 (668)
T COG4946 356 -----------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------------------ 394 (668)
T ss_pred -----------------------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------------------
Confidence 01334455566666666778888887 777777654431
Q ss_pred ceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---
Q 001386 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--- 862 (1088)
Q Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--- 862 (1088)
... . ..-+.|.++..++||++++++. ...+.+.|+.++.....-+...+-|+.++|+| +++++|.+--+|
T Consensus 395 kr~-e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~t 468 (668)
T COG4946 395 KRI-E----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYT 468 (668)
T ss_pred EEe-e----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceee
Confidence 110 0 2456799999999999999997 56799999999987766666778899999999 899999988777
Q ss_pred -eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeC
Q 001386 863 -TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 902 (1088)
Q Consensus 863 -~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~ 902 (1088)
.|+++|+.+++....-. ..+.=.+-+|.||+++|..-+.
T Consensus 469 q~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 469 QSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 78999999888654333 2233356789999999887653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=144.00 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=126.5
Q ss_pred ecCCCEEEEEe-CCcEEEEEcCCceeEEEec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----------
Q 001386 807 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 871 (1088)
Q Consensus 807 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~---------- 871 (1088)
.|++--+.++- -|.+.+.|....+..+.+. .....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666666665 6888888876522211111 12368999999997677888888999999997531
Q ss_pred ----ce--------------eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCC
Q 001386 872 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 933 (1088)
Q Consensus 872 ----~~--------------~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 933 (1088)
+. ++..+.--.+.|...+|||||++||+.|.||.+||+|..+.+ .+....... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 122222234578889999999999999999999999999833 333333333 3
Q ss_pred CeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEee
Q 001386 934 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 984 (1088)
Q Consensus 934 ~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 984 (1088)
...|++|||||++|++ |.|.-|.||.+...+.+.. -.+|.+.|..|+|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6788999999999998887 668999999999987
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.5e-12 Score=140.70 Aligned_cols=277 Identities=15% Similarity=0.117 Sum_probs=188.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC--CCCeEEEEECCCCCEEEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP--GVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~V~~l~~s~dg~~las 413 (1088)
.+.+.++-. +++|| | ....|.+||+.++..+.... ....+..| ++.+.+ .+.++++
T Consensus 9 ~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~l-----~~~~~v~ 66 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVKL-----LSGKIVT 66 (967)
T ss_pred cccchhhcc--ceeee-c-CCCceEEeeCCchhHhhhhh-------------hhccccccccccccee-----ccceEEE
Confidence 444445444 44444 3 33679999999998775321 11123344 111111 2344555
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE--EEE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSL 491 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~ 491 (1088)
+..-+.+..=+..-.. +..-...|....+.-+.+ .++.+..++.+-+||...+.....+....... .++
T Consensus 67 ~~~~~~v~~~~~~~~~-------~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~ 137 (967)
T KOG0974|consen 67 CAKSDEVYVKEASNQI-------IERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL 137 (967)
T ss_pred EEeecceeecchhhhh-------hhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE
Confidence 5433333332222111 112223344455555666 57777778899999988877766554322211 122
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE-E
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-T 570 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~ 570 (1088)
.+-.+.+.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||+++++++. +..+++|++.+++... .
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~ 213 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCT 213 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCcc
Confidence 2223445578999999999999998855555568899999999999999999999987 4559999999988776 5
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
.-+|. ..+..++|.|+ .++++++|-+.++|+.. ++.+..+..|... .+..++..++...+++++.|+.+++|+
T Consensus 214 ~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 214 GFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ccccc---ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhhh
Confidence 55666 89999999997 99999999999999764 4555577766543 588999999999999999999999999
Q ss_pred CCCC
Q 001386 651 TPES 654 (1088)
Q Consensus 651 ~~~~ 654 (1088)
....
T Consensus 287 l~~r 290 (967)
T KOG0974|consen 287 LNGR 290 (967)
T ss_pred hhcc
Confidence 8754
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-12 Score=126.35 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=170.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-----CCcEEEEeC
Q 001386 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 472 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-----d~~i~vwd~ 472 (1088)
...+++|+.|...+++|..+| .+||+.+--+... .-..+.+.+.-+...--.+.+.|+-|+. -..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 445599999999999998888 8999987532211 1112222222222222334333343332 247999996
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC-CCCceEEecCCC--CceEEEEEccCCCEEEEEee
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~ 549 (1088)
...+++.++. ...+|.++.+.. + .|+. -..+.|.+|.+. +.+....+.... ....+++-+.+...||.-+
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg- 155 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG- 155 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC-
Confidence 6777887776 678899998843 2 3443 356789999987 445555444333 2333343333444455433
Q ss_pred CCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCCCEEEEEeCCCc-EEEEEcCCCeeeEEEeCCCCCCCCc
Q 001386 550 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 626 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1088)
...|.|++-|+..-+. ...+..|. ..|.|++.+.+|..++++|..|+ |||||..+|..+..+........|.
T Consensus 156 --~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 156 --FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred --CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 3357799999876554 46777777 99999999999999999999998 7999999999999998776667899
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+++|||+..+||++++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998854
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=166.77 Aligned_cols=343 Identities=18% Similarity=0.169 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCCCcccccccc
Q 001386 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL 250 (1088)
Q Consensus 171 rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~d~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
-|..|+.|++++|+.+|++|.++++++|||.+|.|++|+.-....++=++..-. ++..+.+.++..+.
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~-----------rel~~~y~gV~g~~- 1081 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGT-----------RELQSFYSGVHGNR- 1081 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccc-----------hhhcCcccccccCc-
Confidence 399999999999999999999999999999999999854332222211100000 00001111110000
Q ss_pred CCCCCCCccccccCCCCCCCCcCCccccccccccccceecCccCCCcCCCCCCCchhhhcccccCCcccCCCchhheeec
Q 001386 251 SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL 330 (1088)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l 330 (1088)
......+.|++ ..+++
T Consensus 1082 -------------------~dr~~IFSRFr---------------------------------------------~w~~f 1097 (1516)
T KOG1832|consen 1082 -------------------RDRQFIFSRFR---------------------------------------------SWRSF 1097 (1516)
T ss_pred -------------------ccchhhHhhcc---------------------------------------------cchhh
Confidence 00011111111 12556
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
..|...-+|++||-+.+ .|++|+..|.|+++++.+|..... ...|+.+|+.+.=|.||..
T Consensus 1098 rd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred hccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcce
Confidence 78888999999999888 699999999999999999987765 5679999999999999998
Q ss_pred EEEEeCC--CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-cc---C
Q 001386 411 LGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG---H 484 (1088)
Q Consensus 411 las~~~d--g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~---~ 484 (1088)
+.+.+.- ....+|++.+- ....+.+. .-.++.|+...+. -+.|..-..+.+||++|+..+.++ .+ .
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred eeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhh
Confidence 8776543 35789998752 22222232 3457888876553 233444456889999999887663 22 1
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
...-+...|+| +..+++ .|| .+||++..+.+..+..-. ....-.|+|.|..++..+ .|||++|
T Consensus 1230 ~y~~n~a~FsP--~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIwD~RT 1292 (1516)
T KOG1832|consen 1230 SYSNNLAHFSP--CDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIWDMRT 1292 (1516)
T ss_pred hhhccccccCC--CcceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhhhhHH
Confidence 22224555644 334444 244 379998876665554333 112235999999998864 5899999
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEe--CC---------------CcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
.+.++...... -..+.|+..|+.++..- .| ...+-++..+.+.+.++.... .+..
T Consensus 1293 F~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~D 1364 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLD 1364 (1516)
T ss_pred HHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhh
Confidence 98887776544 45677888887665532 00 124455666666666666543 2566
Q ss_pred EEEecCCCEEEEEeC
Q 001386 628 ICFNKNGTLLAVIAN 642 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~ 642 (1088)
++-+|...++++...
T Consensus 1365 lct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIEM 1379 (1516)
T ss_pred hhcCCccceEEEEec
Confidence 677776666665543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-13 Score=132.66 Aligned_cols=260 Identities=12% Similarity=0.114 Sum_probs=165.3
Q ss_pred cccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEE
Q 001386 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 813 (1088)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1088)
...|++++|-|.+..-++.+.-+.|.+|..+..... ...++ ..+..+... ++..+| ..|+++.+.+||..+
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~---~r~~~---~~s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l 210 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA---NRNIR---MMSTHHLQV--LQDPGH-NPVTSMQWNEDGTIL 210 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccc---ccccc---cccccchhh--eeCCCC-ceeeEEEEcCCCCEE
Confidence 345777777777666666666677888876544321 11111 011111111 222234 789999999999999
Q ss_pred EEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEEC
Q 001386 814 FSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 891 (1088)
Q Consensus 814 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s 891 (1088)
++++ +..|.|||..++..+.-.....+.++-+.||| |+.+|.+++-|+..++|+.....-.....--.+.|....|+
T Consensus 211 ~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs 289 (445)
T KOG2139|consen 211 VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS 289 (445)
T ss_pred eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence 9998 67899999999988766655567888999999 89999999999999999554332222333345589999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCcee----------eeeee------ecCCCCccCCCCeEEEEEcCCCCEEEEEeCC--
Q 001386 892 DALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 953 (1088)
Q Consensus 892 ~dg~~las~s~Dg~i~iwd~~~~~~~----------~~~~~------~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~-- 953 (1088)
|+|++|..+.. |.-++|.+...+.. ....+ ....+.....+++.+++|.|.|.+||+...+
T Consensus 290 pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 290 PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 99998765443 33456655432110 00011 1111211222578999999999999995332
Q ss_pred -------eEEEEEcCcceeeeeeecCC--CcCEEEEEEee---CCCEEEEEeCCCcEEEEEcC
Q 001386 954 -------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 954 -------~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
.|.+||....-.+...+.+- ......++|.| +|.+|..+=..|.+.-|++.
T Consensus 369 ~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 36778876554443332221 23355667776 66777777677777777654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-13 Score=131.67 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=188.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEEEEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~las~ 414 (1088)
.+..++|++--- -+|++..|-.|+|||-.... ... +-......|+|++|-| .++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~-pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTC-PTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCC-Cce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 677888888443 46788899999999987622 211 0122457899999999 45678888
Q ss_pred eCCCEEEEEEccCCCcc-----------cceeEeccCCCCEEEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEec
Q 001386 415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-d~~i~vwd~~~~~~~~~~~ 482 (1088)
+..| |.+|........ .++....+| .+|+++.|.+||. .+++++. |..|.|||+.+|.++.-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 8777 999987532111 112233455 6899999999999 6777775 5689999999998876554
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe-
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN- 561 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd- 561 (1088)
...+.+.-+.| ++|+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+..... +..++-..
T Consensus 236 ~glgg~slLkw--SPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKW--SPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEE--cCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 45677888888 4577899999999999999544332222222333489999999999998766532 22232211
Q ss_pred -CCCCcee-----------------EEEeccccccccEEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCeeeEE
Q 001386 562 -ESEGAIK-----------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 562 -~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 615 (1088)
-+.+... ....+...-.+.+.+++|.|.|.++++.-.. +.|.+||.+.--.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 1111100 0111111113678899999999999986533 3466788765443333
Q ss_pred Ee-CCCCCCCCceEEEec---CCCEEEEEeCCCcEEEEeCC
Q 001386 616 ID-AGGGLPENPRICFNK---NGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 616 ~~-~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.. +......-..++|+| ++.+|.++-..|.+.-|++.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 21 111111235677777 67788888888888777654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=134.08 Aligned_cols=246 Identities=16% Similarity=0.215 Sum_probs=176.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC-
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV- 473 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~- 473 (1088)
-..+|+|.||++|+..+|++-.+..|.||............++..|...|+.+.|+|.++ .|++++.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 347899999999999999999999999999998887777889999999999999999998 69999999999999983
Q ss_pred CC--ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 474 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
.+ ++...+..+....+++.|+|.. +.+++|+.-+.|.+|-++..+.- -++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdW---------------------WVs----- 138 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDW---------------------WVS----- 138 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccce---------------------ehh-----
Confidence 33 3344556688889999996644 58999998888888755432211 000
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC------------------CCeee
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN------------------KVQLL 613 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~------------------~~~~~ 613 (1088)
.+.-+.+ +..|.++.|+|++-.+++|+.|+..|++..- -|+++
T Consensus 139 ----------------KhikkPi---rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 139 ----------------KHIKKPI---RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred ----------------hhhCCcc---ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 0000111 1456777777777667777777777776532 12333
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC-cccccccccCcceeeeecCCCcceeccccCCceeec
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 691 (1088)
..+... ...+..+.|+|+|..|+-.+.|.++.+-|..... .+.......-+..++.+-......+.+.+-+.+.|.
T Consensus 200 ~E~~~~--ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 200 SEASSS--GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFV 276 (361)
T ss_pred HhhccC--CCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEE
Confidence 333222 2358899999999999999999999999888664 344444444566666666666666655554545543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-11 Score=135.52 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=151.8
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|....+.-+.+ .++.++.+..+.|||...+..+.... |.. +. --....-+.++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~--------~~e---r~----~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ--------SDE---RC----TLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC--------CCc---eE----EEEeEEEEeccCcEEEEEecc
Confidence 344455555666 57788888999999998876654211 000 00 001223355678888999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeccCCccEEEEeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH 494 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~ 494 (1088)
.-+.|.+|+....+ .+. .+.+|.+.|.++.|+.||+ ++++.|+|.++++|++++++... ..-+|...|..+++.
T Consensus 153 v~~~iivW~~~~dn--~p~-~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDN--KPI-RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccC--Ccc-eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998332 111 5889999999999999999 89999999999999999998776 777899999999996
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCC-CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
++ .+++++.|-+.++|+.+..+.. .+..| ...+..++..++...+++++. ++.+++|+....
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 54 8999999999999977655544 44444 447899999998888888876 455999987643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=148.71 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=223.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
|.+|.+.|..+.|+..|..|++|+.|..|.+||+.+++....+ ..+|...|....|.|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 7789999999999999999999999999999999998755432 45899999988898865444699999999999876
Q ss_pred CC-CCcee--EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe---cCCCC---ceEEEEEccCCC
Q 001386 472 AV-TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGL---GCTRMAYSANGR 542 (1088)
Q Consensus 472 ~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~---~v~~~~~s~~g~ 542 (1088)
+. +|.+. ..+..|.++|.-++..|. .-..|.+++.|+.+.-.|++.......+ ..+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 44443 456679999999988654 3357999999999999999876543322 12222 457888899776
Q ss_pred -EEEEEeeCCCCceeEEEEeCCCCce------eEEEeccc---cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC--C
Q 001386 543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 610 (1088)
Q Consensus 543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~ 610 (1088)
.+++++. +..+++||.+.-.. +..+..+. ...-.|++++|+.++.-++++..|-.|+++.-.- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5566554 55688898764221 12222211 1124689999998888888888999999995432 2
Q ss_pred ----------eeeEE-EeCCCCCCCCceEEE-ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcc
Q 001386 611 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1088)
Q Consensus 611 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 678 (1088)
..+.. +++|.....|..+-| -|...++++|++=|.|.||+-.+++.++.+.+...-|.|+.-+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH----- 445 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH----- 445 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC-----
Confidence 22222 566665556777775 5788999999999999999999999999999888778877766
Q ss_pred eeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|.-..|++++-|..|+||...
T Consensus 446 -----------------P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 446 -----------------PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -----------------CCCchhhccCCccceeeecCC
Confidence 456678999999999999863
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=153.90 Aligned_cols=253 Identities=17% Similarity=0.199 Sum_probs=183.6
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC--EEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--LLG 412 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~--~la 412 (1088)
.+|+|++|+|....++|.|..+|.|.+||+..+....... -......|..+|+.+.|-.+-. -++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCCcCeEEEEEeccCCCCceE
Confidence 3999999999888899999999999999999887531100 0112456999999999987544 499
Q ss_pred EEeCCCEEEEEEccCCCcccceeEe--c-------cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe---CCCCc----
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEI--D-------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS---- 476 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~--~-------~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd---~~~~~---- 476 (1088)
+++.||.|..|+++.-........+ . .-...+++++|.+...+ .++.|+.+|.|.-=+ ...+.
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcccccccc
Confidence 9999999999988753321111011 1 11236899999988776 688899999887733 22222
Q ss_pred -eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC-CCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 477 -RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 477 -~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
.+..+..|.++|+++.++|-.. ..+++++ |-+|++|.-. .......+..+...+++++|||-.-.++++. +++
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~ 463 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGD 463 (555)
T ss_pred cccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---cCC
Confidence 2335567889999998866543 2344444 9999999887 5566666777777799999999887776665 457
Q ss_pred eeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001386 555 SFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1088)
Q Consensus 555 ~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1088)
+.+.+||+.... .+.+..... ...+.+.|++.|+.+++|...|++.+|++..
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 789999987543 233332222 5677888999999999999999999999864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-09 Score=132.33 Aligned_cols=514 Identities=12% Similarity=0.124 Sum_probs=284.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEE----EccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
..+.|.++.+-+|...++.+..+|.|.+. +..+.. ......-...|.+++||||+. .|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 55789999999999999999999999999 444432 112334567899999999999 66666668888877
Q ss_pred eCCCCceeEEeccCCcc-----EEEEeeeeeCCceEEEEEecCCeE-E-EEECCCC-CceEEecCCCCceEEEEEccCCC
Q 001386 471 DAVTGSRTYSFEGHGAP-----VYSLCPHAKENIHFIFSISVDGKI-K-AWLYDSL-GARVDYDAPGLGCTRMAYSANGR 542 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~s~~~dg~i-~-iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~ 542 (1088)
+ .+-..+....-+... -.++.|-.. ..++ =|+..+.. + .=|.... .....+. ....-..++|-.||.
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkK-eTQF--~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKK-ETQF--HGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE 222 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcc-cCcc--CcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc
Confidence 5 555555444332211 111222100 0000 00000000 0 0000000 0001111 233556799999999
Q ss_pred EEEEEeeCCC-C-ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeEEEe
Q 001386 543 RLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 543 ~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~ 617 (1088)
++|+.+.+.. + ...+++|+-. |.+..+-..-. +--.+++|-|.|+.|++... ...|.+|.. +|-.-..+.
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~ 297 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFT 297 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEe
Confidence 9999886333 3 5889999965 66554444323 44467899999999998653 456777774 444444444
Q ss_pred CC--CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCC
Q 001386 618 AG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1088)
Q Consensus 618 ~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 695 (1088)
.. .....|..+.|++|+..||+...|. |.+|-..+....-...
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe---------------------------------- 342 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE---------------------------------- 342 (928)
T ss_pred cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE----------------------------------
Confidence 33 2334689999999999999988664 9999877553211100
Q ss_pred CCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCc-eEEEeccccceEEEEccCCCCCCCCCC
Q 001386 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEV 774 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~v~iw~~~~~~~~~~~~~ 774 (1088)
+.++ ....+..+.|+|... .|...+.+|.+..+++.
T Consensus 343 ------------------------------i~~~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~---------- 379 (928)
T PF04762_consen 343 ------------------------------IRFS---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA---------- 379 (928)
T ss_pred ------------------------------EEcc---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE----------
Confidence 0000 011122245555332 34555555666555532
Q ss_pred CCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-CCCEEEEEeCCcEEEEEcCCceeE-----EEecCCCCCeEEEEEc
Q 001386 775 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPPSPTATSLAFN 848 (1088)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~l~~s 848 (1088)
|++..+. ..+| |...+++.++.++.+-.+...-.. ..+. -...|.+++|+
T Consensus 380 ----~~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~ 435 (928)
T PF04762_consen 380 ----WDVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFS 435 (928)
T ss_pred ----EEEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEe
Confidence 1111110 0011 223344444556777666543211 2222 34689999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCcee--------eeeec----------cccCCeeEEEECCCCCEEEEEeCC---CcEE
Q 001386 849 PHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVSSGGD---AQIF 907 (1088)
Q Consensus 849 p~d~~~lasg~~dg~i~lwd~~~~~~--------~~~l~----------~h~~~V~~l~~s~dg~~las~s~D---g~i~ 907 (1088)
+ ++..+|+-..||.|.+|....... ...+. .-...+..++|..+...++....+ ..+.
T Consensus 436 ~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 436 P-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred C-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 9 666688899999999998544211 11111 123457888998887776666554 5688
Q ss_pred EEEcCCCce-eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeC
Q 001386 908 VWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD 985 (1088)
Q Consensus 908 iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d 985 (1088)
++++...+. .......... ..+..+...++...++. ..+|++...+..........++. ......++...+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~~~~~~~~~ 587 (928)
T PF04762_consen 515 LVDIDDSENSASVESSTEVD------GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPWMEVCQING 587 (928)
T ss_pred EEEeccCCCceeEEEEeccC------ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcEEEEEEECC
Confidence 888854321 1111111111 13455555666553443 77888886665544322211111 222333333333
Q ss_pred CC---EEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 986 CR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 986 g~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.. .++.-+..|.+++ ++..++.- .++++.++ .+|+.+.....+++..+.
T Consensus 588 ~~~~~~~~GLs~~~~Ly~----n~~~la~~----------------~tSF~v~~---~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 588 SEDKRVLFGLSSNGRLYA----NSRLLASN----------------CTSFAVTD---SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ccceeEEEEECCCCEEEE----CCEEEecC----------------CceEEEEc---CEEEEEecCceEEEEECc
Confidence 33 3444444455543 33333211 22344443 677777788999999998
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=147.50 Aligned_cols=238 Identities=11% Similarity=0.128 Sum_probs=157.6
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~---dg~i~vwd~~~~~~~~~ 433 (1088)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+||+.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887654332 3346678999999999999997653 3579999998876322
Q ss_pred eeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC-Ce
Q 001386 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 510 (1088)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~ 510 (1088)
+....+.+...+|+|||+.+ +++.+.++ .|.+||+.+++... +..+...+....| ++||+.|+..+.+ |.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~w--SPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTW--FPDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEE--CCCCCEEEEEeCCCCC
Confidence 22233345578999999952 33334444 58899998887654 4334455666777 5577777766654 44
Q ss_pred EEEE--ECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 511 i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
..+| |+.++... .+...........|+|||++++..+.. .+...|++||+.+++.. .+... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCC----CCCCCceECC
Confidence 4555 66554432 333344455678999999999887643 23567999999888654 33321 1234578999
Q ss_pred CCCEEEEEeCCCc---EEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
||+.++.++.++. +.++++ +|.....+..+.+ .+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCC--CcCCcccCC
Confidence 9999999887764 677777 4555566654433 467788876
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=127.55 Aligned_cols=241 Identities=12% Similarity=0.149 Sum_probs=171.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCC--CeEEEEEcCCCCcEEE-EEeCC------CeEEEEEc
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA 869 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la-sg~~d------g~i~lwd~ 869 (1088)
....+++|..|...+++|.+...+||+++..+.......+.+ .+..+-|-. ++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999999999999987554333332222 333444432 3444 44433 38999996
Q ss_pred CCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 870 ~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
...+++.++. -..+|.++.+++| .|++. ..+.|+||.....-. ....+....... ...+++=..+-.+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPk----GlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPK----GLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChh-heeeeecccCCC----ceEeecCCCCceEEEc
Confidence 6677777777 6688999999876 45544 356799999985321 122222222111 2333333334445555
Q ss_pred -E-eCCeEEEEEcCccee-eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCccc
Q 001386 950 -V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCL 1025 (1088)
Q Consensus 950 -~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1088)
| .-|+|+|-|+...+. ......+|.+.|.+++++-+|..|||+|..|+ |||||..+|..+++++.+.-
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-------- 225 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-------- 225 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc--------
Confidence 4 348999999987666 34567899999999999999999999999997 79999999999999884432
Q ss_pred cccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1026 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1026 ~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
+-...+++|+| +..+|+++++-|+|+|+.+.+..
T Consensus 226 ~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 22346899999 88999999999999999997755
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-13 Score=130.57 Aligned_cols=237 Identities=14% Similarity=0.100 Sum_probs=178.1
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
..+|+|.+|++|++ .+|++-....|.||.......-. ....+..|...|+++.|+|.+..|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 45899999999998 68888888999999987765211 11237789999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----EEeccCCccEE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY 489 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~v~ 489 (1088)
++.|..-+||....+...++...+..|....+++.|+|.++ .+++||.-+.|.||=.+...-= +.-+.+...|+
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999966666666667888999999999999999 7999999999999876654321 22244677899
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEEC-----CC-------------CCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLY-----DS-------------LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
++.|+++ +-++++|+.|+..+++.. +. ++...++....+.+..+.|+|+|..|+-.+.
T Consensus 151 sldWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 9999875 468999999999999853 11 1112233455678999999999999999876
Q ss_pred CCceeEEEEeCCCCc-eeEEEeccccccccEEEEEEeCCCCEEEEEeCC
Q 001386 552 EGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1088)
+..+.+-|..... .+....... -+..++.|..+. .++.++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhcc---CCceeeEeecCC-ceeecCCC
Confidence 4458888876654 233333222 466777776553 44555544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-10 Score=115.89 Aligned_cols=526 Identities=14% Similarity=0.125 Sum_probs=280.9
Q ss_pred CchhheeecccCCCCceeeeecCCCCeEEEE----E--cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLV----G--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~----g--~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 395 (1088)
+.....+.+..|-+-|+...|+|||+.++.+ | ...+.+.+.+.++|+..+.- .+ |
T Consensus 66 lk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiT-----------------yf-G- 126 (668)
T COG4946 66 LKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRIT-----------------YF-G- 126 (668)
T ss_pred hccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEE-----------------Ee-c-
Confidence 3344456777888899999999999965441 2 22356778888888765421 12 2
Q ss_pred CCCeEE-EEECCCCCEEEEEeCCCE----EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC-----
Q 001386 396 GVSVNR-VVWSPDGSLLGVAYSKHI----VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----- 465 (1088)
Q Consensus 396 ~~~V~~-l~~s~dg~~las~~~dg~----i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~----- 465 (1088)
...+. .-|+|||+.|++...-.- -.+|.+....... -.-.-++.+.+.+- ||. ++.|-.--
T Consensus 127 -r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~----e~LnlGpathiv~~-dg~---ivigRntydLP~W 197 (668)
T COG4946 127 -RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT----EPLNLGPATHIVIK-DGI---IVIGRNTYDLPHW 197 (668)
T ss_pred -cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee----eeccCCceeeEEEe-CCE---EEEccCcccCccc
Confidence 33333 459999999998754322 2334443221100 01122355555553 343 22221110
Q ss_pred -------cEEEEeCCC-CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE--CCCCCceEEecCCCCceEEE
Q 001386 466 -------TIKVWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL--YDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 466 -------~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~~ 535 (1088)
.=++|--.. |+.-..+-.-.+.|.+-.+ - .++..+....+|.=.+|. ++....... ..-....+=
T Consensus 198 K~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmI--V-~~RvYFlsD~eG~GnlYSvdldGkDlrrH--TnFtdYY~R 272 (668)
T COG4946 198 KGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMI--V-GERVYFLSDHEGVGNLYSVDLDGKDLRRH--TNFTDYYPR 272 (668)
T ss_pred ccccCCccceEEEEecCCcceeeeeecCCCcCCceE--E-cceEEEEecccCccceEEeccCCchhhhc--CCchhcccc
Confidence 123453332 2222222222222222111 1 112233334444444443 322221111 111123334
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccc---cc--cEE---EEE-EeC-CCCEEEEEeCCCcEEEE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---HN--SVS---VVH-FDT-AKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~~--~v~---~~~-~~~-~~~~l~~~s~dg~i~iw 605 (1088)
..+.||+.++... .+.|+++|+.+....+.--+.... .. .+. -+. |++ +|.+++..|. |...+.
T Consensus 273 ~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 273 NANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 4578999988754 333999999887654433221100 00 011 111 222 5677777764 666666
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC-cEEEEeCCCCCcccccccccCcceeeeecCCCcceecccc
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 684 (1088)
+.-.+-.++.-. ...|.-..+..++.-++.|..|| .+-|++..++......
T Consensus 347 ~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e------------------------ 398 (668)
T COG4946 347 RPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE------------------------ 398 (668)
T ss_pred CCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee------------------------
Confidence 655544443321 12366667777777888999988 8899988866322111
Q ss_pred CCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEcc
Q 001386 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1088)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~ 764 (1088)
..-+.|.++..+++|+.++++.....+-+.|++
T Consensus 399 -----------------------------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 399 -----------------------------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred -----------------------------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 133568889999999999988888777777766
Q ss_pred CCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-C----CcEEEEEcCCceeEEEecCCC
Q 001386 765 RNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPS 839 (1088)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d----g~i~iwd~~~~~~~~~~~~~~ 839 (1088)
.+.. .+. ......-|+.++|+|+++++|.+- + ..|+++|+.+++....- .+.
T Consensus 432 ngnv------------------~~i----dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~t 488 (668)
T COG4946 432 NGNV------------------RLI----DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPT 488 (668)
T ss_pred CCCe------------------eEe----cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCc
Confidence 5532 111 112566799999999999999986 4 45999999987765443 344
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee--eeccccCCeeEEE----ECCCCCEEEE-EeCCCcEEEEEcC
Q 001386 840 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGLV----FSDALNILVS-SGGDAQIFVWDVD 912 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~--~l~~h~~~V~~l~----~s~dg~~las-~s~Dg~i~iwd~~ 912 (1088)
..-.+-+|.| |+++|..-+.-. .|..+-+.+. .+..|+.+-..+. .||-.+..-. -+.+|.+-+=++.
T Consensus 489 a~DfsPaFD~-d~ryLYfLs~Rs----LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie 563 (668)
T COG4946 489 AYDFSPAFDP-DGRYLYFLSARS----LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIE 563 (668)
T ss_pred ccccCcccCC-CCcEEEEEeccc----cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhc
Confidence 4556678999 888877654311 1222222211 1122322221111 1222222111 2344444333332
Q ss_pred CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-------------E--eCCeEEEEEcCcceeeeeeecCCCcCE
Q 001386 913 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------V--HETHLAIYEAEELTCLKQWFPISSVPI 977 (1088)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-------------~--~d~~i~vwd~~~~~~~~~~~~~h~~~v 977 (1088)
.. ..++...++. -.+++=-.+|+.+.. + .-|.+.+||+++.+.-.. ...+
T Consensus 564 ~r----~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~-----k~nv 628 (668)
T COG4946 564 DR----VEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY-----KDNV 628 (668)
T ss_pred cc----ccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH-----hccc
Confidence 21 1122222221 122222233322221 1 235788888887654322 4578
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 978 SQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 978 ~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
+++..|+||+.+.. -.||.++.++++.
T Consensus 629 ss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 629 SSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred ceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 99999999999888 7899999999876
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-13 Score=138.20 Aligned_cols=284 Identities=14% Similarity=0.194 Sum_probs=205.2
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
+|...-+.+..||||++++|+|...-.|++||+.+-.+.....+ ....|.-.-+|.|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 45667889999999999999999999999999987665433111 23556666677777777
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
+.-..|.+|.+-.-. |..... .+. ..-..++++.-.-. |+.++....|+-++++.|+.+..+....+.++++
T Consensus 110 v~L~~DR~IefHak~-G~hy~~--RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKY-GRHYRT--RIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhc-Ceeeee--ecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 777788877664322 211110 111 12234455443332 3334445568889999999999998888999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC------CC-----ceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
.+++. ..+|++|+.+|.|..||.+.......+... .+ .|+++.|+.+|-.+++|.. .|.+++|
T Consensus 182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 88544 358999999999999999887655443322 11 4899999999999999976 5569999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCC--CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
|+++.+++..-.. . ..-+|..+.|.+.+ +.+++ .....++|||-.+|+....+.... .++.+|+-|++.++.
T Consensus 256 DLRa~~pl~~kdh-~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKDH-G-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeeccc-C-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecCCceEE
Confidence 9999887654332 2 24678899997763 34444 345779999999999998886543 488999999999999
Q ss_pred EEeCCCcEEEEeCCCC
Q 001386 639 VIANENRIKILETPES 654 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~ 654 (1088)
++..++.+..|=++..
T Consensus 330 ~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSL 345 (703)
T ss_pred EecCCCcceeEEcccc
Confidence 9999988887766643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-11 Score=132.14 Aligned_cols=520 Identities=11% Similarity=0.131 Sum_probs=301.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCc------------ccceeEeccCCCCEEEEEecCCCCcEEEEEEe
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s 462 (1088)
......|++|+....++|.|+.||.++|-.+.+... +..-.++.||.+.|.-+.|+.+.+ .|-+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 456789999999999999999999999998875422 111235789999999999999888 789999
Q ss_pred CCCcEEEEeCCCCceeEEec--cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccC
Q 001386 463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1088)
Q Consensus 463 ~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 540 (1088)
.+|.|.||-+-.|.-...+. ...+.|.+++| +.+|..+.....||.|.+=.++..+ +.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988886543332 24566778887 5678888888888888776554322 1111222223456889999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCc-------eeEEEec-cccccccEEEEEEe--------CCCCEEEEEeCCCcEEE
Q 001386 541 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 604 (1088)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~-~~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i 604 (1088)
.+.++.+-. ++.+.++|.+..- +.-...+ .......+..+.|. |+...++.+..+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887654 3448888865321 1111111 11011234555553 57889999999999888
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC---------cEEEEeCCCCCcccccccccCcceeeeecCC
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 675 (1088)
-.-.+...-..+... -.+..+.|+++|..||+++.+. .|.+|. .-|..+.+++.....|+.++|-..
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence 765544333333322 2467899999999999998652 222222 123333344444444444444322
Q ss_pred CcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc
Q 001386 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1088)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 755 (1088)
+..++.+ .|+.|.+=++. |+-+ -.....
T Consensus 320 gLriA~A-----------------------vdsfiyfanIR---------------------------P~yk--Wgy~e~ 347 (1189)
T KOG2041|consen 320 GLRIAIA-----------------------VDSFIYFANIR---------------------------PEYK--WGYIEE 347 (1189)
T ss_pred ceEEEEE-----------------------ecceEEEEeec---------------------------ccce--EEEeee
Confidence 2211110 01111111100 0000 000000
Q ss_pred cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEE-cCCceeEE
Q 001386 756 GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYI-VMTFKTIL 833 (1088)
Q Consensus 756 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd-~~~~~~~~ 833 (1088)
..|.+|. .. ......+..||..+.+.... .-....+++++.+--.|+.-. ++.+.-++ +++...+.
T Consensus 348 TvVy~y~--~~---e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~ 415 (1189)
T KOG2041|consen 348 TVVYVYQ--KE---ELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVY 415 (1189)
T ss_pred EEEEEEc--cC---CCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCCCcchhhhhcccceE
Confidence 0111111 00 01222344556555443222 223445677776655555544 55554442 12211111
Q ss_pred Eec-----C-----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-----------------------------
Q 001386 834 TIM-----P-----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----------------------------- 874 (1088)
Q Consensus 834 ~~~-----~-----~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~----------------------------- 874 (1088)
.+. + .-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 416 ~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l 493 (1189)
T KOG2041|consen 416 FLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTL 493 (1189)
T ss_pred EEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhcee
Confidence 111 0 001121111111 56677777766 477886543211
Q ss_pred ---eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-E
Q 001386 875 ---ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V 950 (1088)
Q Consensus 875 ---~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~ 950 (1088)
..++.|..++|.+++.| .++|..+-..|.|.-+.+..... .+...- ...+.+++.+.+...+|+ -
T Consensus 494 ~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~----n~~~y~~~lNCnstRlAiId 562 (1189)
T KOG2041|consen 494 EYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPV----NPSIYSIKLNCNSTRLAIID 562 (1189)
T ss_pred eccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eecccc----CchheeEeeccCcchhhhhh
Confidence 13445566788888886 57888899999999999987432 222211 135889999999999988 4
Q ss_pred eCCeEEEEEcC---cceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 951 HETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 951 ~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
.-|.+.+.|+. +|..+.-+.......|..+.|..|...|+.--....+.|++-.
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn 619 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN 619 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc
Confidence 56777777765 5555555565567788889998888776655555566666533
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-13 Score=149.37 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=153.7
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
.+......+.+..+...+...+|||||+.++.+.. .+..|.+||+.+|+... +....+
T Consensus 184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~ 243 (429)
T PRK03629 184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPR 243 (429)
T ss_pred EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCC
Confidence 33344445666667778999999999996544432 23579999998886433 111233
Q ss_pred CeEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-CCc--EEEEe
Q 001386 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWD 471 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-d~~--i~vwd 471 (1088)
.+..++|||||+.|+.. +.+| .|.+||+.+++.. .+..+...+....|+|||+ .|+..+. ++. |.++|
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEE
Confidence 34568999999999876 3344 5899999987543 3444556778899999999 4544443 344 45557
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+.+++. ..+..+........| ++||++++..+.+ ..|.+||++++.... +... .......|+|||+.|+..+
T Consensus 318 ~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 318 INGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEE
Confidence 766654 344334444445566 5577787776543 358889988776443 2222 2334678999999999988
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
.++. ...++++++ +|...+.+.++. +.+...+|+|
T Consensus 393 ~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred cCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence 6433 456888887 455556676665 6677778876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-12 Score=146.26 Aligned_cols=237 Identities=13% Similarity=0.072 Sum_probs=160.9
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~---dg~i~vwd~~~~~~~~~ 433 (1088)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 478888886554322 5568889999999999999998764 468999999988642
Q ss_pred eeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CC-
Q 001386 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 509 (1088)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg- 509 (1088)
.+..+.+.+...+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........| ++||+.++..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~--spDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSY--SPDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeE--cCCCCEEEEEECCCCC
Confidence 35566677889999999995 3455666655 77779887765 445556555566667 557777776653 33
Q ss_pred -eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 510 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
.|.+||+....... +......+....|+|||+.|+..... .+...|.+||..++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57788876654433 33334456678899999999987643 2346799999866543 33322 1 2456788999
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
||+.++..+.+ ..+.++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998875543 2577888866544 3443221 245667765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-09 Score=127.67 Aligned_cols=575 Identities=12% Similarity=0.131 Sum_probs=306.3
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEE----ecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
..+.|.++.|-++.. -++.+..+|.|.+. +..+...-. ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 345899999999988 47777888999999 555544332 22245789999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCC-----CCEEEEEecCCCCcEEEEEEeCCCcE-E-EEeCCCC-ceeEE
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITCGDDKTI-K-VWDAVTG-SRTYS 480 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~-----~~v~~~~~s~d~~~l~l~s~s~d~~i-~-vwd~~~~-~~~~~ 480 (1088)
..||.++.++++.+.+-. -+.+. +..-+. ..-..+-|-....+ +=|+.-+.. + .=|.... .....
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i~---E~~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPIS---EVPLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEEE---EeecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCc
Confidence 999999999988876422 11111 111111 11122333222111 001100000 0 0010000 00011
Q ss_pred eccCCccEEEEeeeeeCCceEEEEEec---C---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 481 FEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+. +...-..++| .+||.++++.+. . +.+|+|+-+ +.....-....+--.+++|-|.|+++|+... ..+.
T Consensus 206 ~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~ 280 (928)
T PF04762_consen 206 LS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDR 280 (928)
T ss_pred cc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCC
Confidence 22 3333444555 789999998875 3 469999755 3333333333333457899999999999875 3334
Q ss_pred eeEEEEeCCCCceeEEEeccc-cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE--EEeCCCCCCCCceEEEe
Q 001386 555 SFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAGGGLPENPRICFN 631 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s 631 (1088)
..|..|. ++|-.-..|.... .....|..+.|++|+..|+....|. |.+|...+..... .+..... ..+..+.|+
T Consensus 281 ~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wd 357 (928)
T PF04762_consen 281 HDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWD 357 (928)
T ss_pred cEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEEC
Confidence 5566776 4454444444321 1236789999999999999977655 9999988765432 3332222 234559999
Q ss_pred cC-CCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 632 KN-GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 632 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
|. ...|.+.+.+|.+..++..-.. ..++.. .++..-.+..-...++
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~v---------------~~s~~~------------------~~~D~g~vaVIDG~~l 404 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWDV---------------SRSPGS------------------SPNDNGTVAVIDGNKL 404 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEEE---------------EecCCC------------------CccCceEEEEEeCCeE
Confidence 94 5567777777777665543110 000000 0000000000011122
Q ss_pred eeccc---cccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcc-cCCCCCCc
Q 001386 711 EVEKP---LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRL-YQPRHGPQ 786 (1088)
Q Consensus 711 ~vw~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~ 786 (1088)
.+-.+ ..+.|.....+. -...|..++|++++..+++...||.+.+|.++....... ..+.+ .......
T Consensus 405 llTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~- 476 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSV--KPPKLLSSISLDS- 476 (928)
T ss_pred EEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccc--cCcchhhhccccc-
Confidence 22221 112222223333 235799999999999899999999999999765543110 00000 0000000
Q ss_pred ceeeccCCCCCCCCeeEEEEecCCCEEEEEeC----CcEEEEEcCCce---eEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001386 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 859 (1088)
... .........+..++|..+..+++.... ..+.+++....+ .+.........+..+...+ +...++.-.
T Consensus 477 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~ 553 (928)
T PF04762_consen 477 MDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQT 553 (928)
T ss_pred ccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEE
Confidence 000 000013456788888888877777653 458888874332 2333333445555555555 444466677
Q ss_pred CCCeEEEEEcCCcee-eeeeccccCCeeEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeE
Q 001386 860 DDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 936 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~-~~~l~~h~~~V~~l~~s~dg--~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 936 (1088)
.+|.+...+...... +..|..-...+..+.+.... ..++.-+..|.+++ ++ ..+. ..++
T Consensus 554 ~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~------~~la---------~~~t 615 (928)
T PF04762_consen 554 NDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS------RLLA---------SNCT 615 (928)
T ss_pred CCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC------EEEe---------cCCc
Confidence 799888766554322 22333222222222332222 13444444454433 21 0111 1355
Q ss_pred EEEEcCCCCEEE-EEeCCeEEEEEcCc-ceeeeeeecC----CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEE
Q 001386 937 HIQFHKDQTRFL-LVHETHLAIYEAEE-LTCLKQWFPI----SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 937 ~~~fs~dg~~l~-~~~d~~i~vwd~~~-~~~~~~~~~~----h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~ 1010 (1088)
+.++ .+.+|+ +.....++..++.. -..+...... +...++.+ .-|..|+++--...=.|..++.|.+-+
T Consensus 616 SF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVLQmPRGNLEt 690 (928)
T PF04762_consen 616 SFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVLQMPRGNLET 690 (928)
T ss_pred eEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEEEcCCCchhh
Confidence 6655 344444 46777888888881 1111111111 11223332 367788877655566677888887753
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=149.01 Aligned_cols=234 Identities=15% Similarity=0.146 Sum_probs=153.6
Q ss_pred cCCCchhheeecccCCCCceeeeecCCCCeEEEEEcc--cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC
Q 001386 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1088)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 396 (1088)
+.+......+.|..|...+.+.+|||||++++.+... ...|.+||+.+|+... +..+.
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~ 247 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFR 247 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCC
Confidence 3444455566777777789999999999964444322 2469999998886543 22234
Q ss_pred CCeEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCCc--EEEE
Q 001386 397 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVW 470 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~~--i~vw 470 (1088)
+...+++|||||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+. ++..+ .++. |.++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRV 321 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEE
Confidence 455678999999988754 4444 5999999987632 35556556678899999994 44444 4444 6677
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCC---eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
|+.+++.. .+..+.......+| +++|+.++..+.++ .|.+||+.++.... +. +........|+|||++++..
T Consensus 322 dl~~g~~~-~lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 322 AASGGSAE-RLTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYA 396 (433)
T ss_pred ECCCCCeE-EeecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEE
Confidence 77777643 23223333445566 55777877765443 59999998766543 22 22234567999999999887
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
+.. .+...|++++... ...+.+..+. +.+...+|+|
T Consensus 397 s~~-~g~~~L~~~~~~g-~~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 397 TRE-GGRGVLAAVSTDG-RVRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred Eec-CCceEEEEEECCC-CceEEcccCC---CCCCCCccCC
Confidence 754 3466799999854 4445554433 4556666665
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=143.46 Aligned_cols=239 Identities=18% Similarity=0.223 Sum_probs=161.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.||++.|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+ -.||...|.++.|-|....-.+++|..|..|+++|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 8899999999999999999999999999999999977766554 34999999999999976655899999999999999
Q ss_pred CCC----------CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE----------EecCCCCc
Q 001386 472 AVT----------GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLG 531 (1088)
Q Consensus 472 ~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~ 531 (1088)
+.. ....+.+..|...|..++..+. .-..+.+++.||+|+-+|++....-. .+...--.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~-~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPN-GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCC-CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 884 2334566778888888887543 22689999999999999998632111 11111124
Q ss_pred eEEEEEccCCCE-EEEEeeCCCCceeEEEEeCCCCceeEEEecccccc----ccEEEEE-EeCCCCEEEEEeCCCcEEEE
Q 001386 532 CTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH----NSVSVVH-FDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 532 v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~-~~~~~~~l~~~s~dg~i~iw 605 (1088)
..++..+|...+ |++|+. +...++||.+.. +..+.....+. ....|+. |+|.+- ...+|
T Consensus 203 lk~ltisp~rp~~laVGgs----dpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~g----- 267 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGS----DPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQG----- 267 (758)
T ss_pred eeeeeecCCCCceEEecCC----Cchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccc----cCccc-----
Confidence 678899996654 555543 667889995321 11221111000 0011111 222210 11111
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 659 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 659 (1088)
..... ...++-++|+|+|.-|.+.-....|+++|+..++....
T Consensus 268 -----n~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 268 -----NLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -----ccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 11100 01246689999998777776667999999998765543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-12 Score=146.58 Aligned_cols=238 Identities=16% Similarity=0.125 Sum_probs=157.7
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ 433 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~ 433 (1088)
.+|.+||...+.... +..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986543322 44577889999999999999988743 46999999887642
Q ss_pred eeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe-cCCe
Q 001386 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK 510 (1088)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~ 510 (1088)
.+..+.+...+.+|+|||+. ++++.+.++ .|.+||+.+++. ..+..+.......+| ++||+.++..+ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence 23344455568899999995 334555555 599999988875 345555555556677 55777777665 3454
Q ss_pred --EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 511 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
|.++|+.+++... +..........+|+|||++++....+ .+...|.+||+.+++.. .+.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence 6666666554332 22233344568999999999987642 33557999999888765 3322 1 1234568999
Q ss_pred CCCEEEEEeCC---CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 589 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 589 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
||++++..+.+ +.|.++++.. .....+..+.+ .+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCCC--CCCCCccCC
Confidence 99998876653 4577888854 44454543322 356667765
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-11 Score=128.48 Aligned_cols=285 Identities=11% Similarity=0.120 Sum_probs=187.0
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~- 414 (1088)
.....++|++|+ ++|.+. +..++|++..++..+.+. ....+.++-|||-|.+|.+=
T Consensus 36 ~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~e 92 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTWE 92 (566)
T ss_pred cceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccccc
Confidence 477889999998 677654 488999999988644321 22378999999999999863
Q ss_pred ----eC-----CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 415 ----YS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 415 ----~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
.. .-.+.+|+++++.....+ ..+ .+.. ++..|+.|.. ++.--..+.+.+|++..-+.+ .-.-|.
T Consensus 93 ~~~i~~~~~~~~pn~~v~~vet~~~~s~~-q~k-~Q~~-W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~-~~kl~~ 165 (566)
T KOG2315|consen 93 PWAIYGPKNASNPNVLVYNVETGVQRSQI-QKK-MQNG-WVPQFSIDES---LAARLVSNEVQFYDLGSFKTI-QHKLSV 165 (566)
T ss_pred ccccccCCCCCCCceeeeeeccceehhhe-ehh-hhcC-cccccccchh---hhhhhhcceEEEEecCCccce-eeeeec
Confidence 11 234789999995432211 222 2222 6899999987 333333567999998764332 122356
Q ss_pred ccEEEEeeeeeCCceEEEE-----EecCCeEEEEECCCCCceEEec---CCCCceEEEEEccCCCEEEEEe-e--C----
Q 001386 486 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCG-T--S---- 550 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~-~--~---- 550 (1088)
..|+.+.+++.+.-..+++ .+.-+.|++|.+.......... .-...-..+.|++-|.-|++.. . |
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 7788888877755555554 4566779999776222111110 0111223577888777544322 2 1
Q ss_pred -CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE--EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 551 -KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 551 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
.-|+..+++.+.......-.+.. .++|.++.|+|+++.+++ |-.-.++.|+|++ +.++..+... +-++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~ 316 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNT 316 (566)
T ss_pred cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccc
Confidence 12466788888873333333322 479999999999987766 5577889999985 5666666432 3478
Q ss_pred EEEecCCCEEEEEeC---CCcEEEEeCCCCCcccc
Q 001386 628 ICFNKNGTLLAVIAN---ENRIKILETPESNSVDA 659 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 659 (1088)
+-|+|.|++++.++- .|.|.|||+.+.+.+..
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 999999999998876 48899999997665543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-12 Score=129.65 Aligned_cols=281 Identities=14% Similarity=0.106 Sum_probs=188.2
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
.-++..++|||.|+ +|++... ..|.+|....+..+..+ ....|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence 34789999999998 5776544 67999998887755431 2357999999999999998
Q ss_pred EeCCC---------------EEEEEEccCCCcccceeEeccCCCC--EE-EEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 414 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 414 ~~~dg---------------~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
=+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+.+. ++=- ....+.|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecchh--hhhh-ccCeEEEEec-CC
Confidence 65433 38999999997665 34444444 44 6789988883 3322 2346999997 43
Q ss_pred cee-EEeccC-CccEEEEeeeeeCCceEEEE-----EecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 476 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 476 ~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
... ..+..- ...|....++|..++..|+. ...++++++|.+.....+.....-...-..+.|.+.|++|++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 321 122111 24567777777666666554 46778899999886555544333333334578899998876543
Q ss_pred e-------CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE--eCCCcEEEEEcCCCeeeEEEeCC
Q 001386 549 T-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 549 ~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
. +.-|+..++++++....+ ....... ++|...+|.|.++.+++. ..+..+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred EEeeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence 2 112346688888773332 2222333 899999999999887764 47888999999765 44444322
Q ss_pred CCCCCCceEEEecCCCEEEEEeCC---CcEEEEeCCC
Q 001386 620 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPE 653 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~~~ 653 (1088)
. -+.+.|+|.+++++.++-| |.+.+|+...
T Consensus 317 ~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 317 K----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred c----cccccccCcccEEEEecCCccccceEEeccCC
Confidence 2 3668999999999987765 6777877653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-14 Score=143.41 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=212.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
......+.++.+|+.|+.|+..|.|-.+|+.+++.... +. -...|.++.|..+.+ +++++ ....+.||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---i~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---IN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeee---ee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCC
Confidence 45567899999999999999999999999999875553 22 234788999998887 55555 467899999 889
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
..++.++.| ..|..+.|.|. --+|++++..|.++.-|+.+++.+..+....+.+..|+-+|-+..+-.|.. .+
T Consensus 201 tElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 999988855 56777888654 357888999999999999999999988888889999999999888888764 67
Q ss_pred eEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1088)
+|.+|.+...+.+..+..|. ++|.++++.++|.++++++.|..++|||++....+.++.... ....+++|..|
T Consensus 274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg- 346 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG- 346 (545)
T ss_pred eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc-
Confidence 79999999999998888888 999999999999999999999999999999888777665422 35678888766
Q ss_pred EEEEEeCCCcEEEEeCCCC-----CcccccccccCcceeeeecCCCcceeccccCC
Q 001386 636 LLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
+||.+.. ..+.||.-... .....-......|..+.|.|.-..++++...|
T Consensus 347 lLA~~~G-~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 347 LLALSYG-DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ceeeecC-CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4444443 48999954322 11111122334788999999888888776665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=146.72 Aligned_cols=234 Identities=20% Similarity=0.204 Sum_probs=150.8
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
.+..+...+.+..+...+.+.+|||||+.++.+...+ ..|.+||+.+|+... +....+
T Consensus 181 ~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g 240 (427)
T PRK02889 181 SDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG 240 (427)
T ss_pred ECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence 3344555566777778999999999999644443332 459999999887543 222335
Q ss_pred CeEEEEECCCCCEEEE-EeCCCEEEEEEc--cCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe--C
Q 001386 398 SVNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--A 472 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las-~~~dg~i~vwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd--~ 472 (1088)
.+.+.+|||||+.|+. .+.++...||.+ .++. .+ .+..+...+....|+|||+.+ ++++..++...+|. +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEEC
Confidence 5678999999999875 566776666654 4443 22 455566666788999999952 33333456666665 4
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCC---eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
.+++.. .+..+........| +++|++|+..+.++ .|.+||+.+++...... ........|+|||+.|+....
T Consensus 316 ~~g~~~-~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 316 SGGAAQ-RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCceE-EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEe
Confidence 455432 22222222334455 55778888776654 69999998776543322 223467899999999998876
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
.+ +...+++.+. ++...+.+..+. +.+...+|+|
T Consensus 391 ~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp 424 (427)
T PRK02889 391 QG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGP 424 (427)
T ss_pred cC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCC
Confidence 43 3566777777 455555565444 5566667776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-11 Score=126.97 Aligned_cols=539 Identities=10% Similarity=0.097 Sum_probs=321.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
...|++|..... ++|+|+.||.+++-.+.+...-...+ .+.......-...+.||.+.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 678999999887 79999999999999987654221100 0111111222334899999999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeccCCccEEEEeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~ 494 (1088)
.+|.|.||-+-.|.-.... .-....+.|.+++|+.||. .+.....||.|.|=.++..+.- +.+++. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 9999999999887643321 1223456789999999999 5777777888776554432211 122221 1123444
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCC-------ceE----EecCCCCceEEEEE--------ccCCCEEEEEeeCCCCce
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~v~~~~~--------s~~g~~l~~~~~~~~~~~ 555 (1088)
++|.+.++.+-..|.+.++|.+..- +.. .+......+..+.| -||...++++.. ++
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4566777778888999999865321 111 11112223444444 257778888765 33
Q ss_pred eEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---------CcEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
.+.+....+ ..++-.-.+ ..+..+.|+++|..++.++.+ +.|.++.. -|..+.+++..+. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 344443222 222222222 357888999999999998743 24555553 5777888876654 58
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccc
Q 001386 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1088)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 705 (1088)
++++|-..|-.+|.+- |+.|.+=++...-....+. + .+.+... .++ .
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e---~---------------------TvVy~y~-~~e-------~ 358 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE---E---------------------TVVYVYQ-KEE-------L 358 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEee---e---------------------EEEEEEc-cCC-------C
Confidence 9999988887777664 5678776666432111110 0 0000000 000 0
Q ss_pred cCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCC
Q 001386 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGP 785 (1088)
Q Consensus 706 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1088)
....|..||....+.... .-....+++++.+--.|+.-..+|.+.-++--.+ .-++|-.
T Consensus 359 p~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~--------~~~~~~l---- 417 (1189)
T KOG2041|consen 359 PQYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLEN--------RSRVYFL---- 417 (1189)
T ss_pred cceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhc--------ccceEEE----
Confidence 012466777543322111 1123446667666655666666666554421000 0011100
Q ss_pred cceeeccCCCCCC---CCeeEEEEecCCCEEEEEeCCcEEEEEcCCcee-------------------------------
Q 001386 786 QFMVNDTTDSNSQ---EAVPCFALSKNDAYLFSASGGVISLYIVMTFKT------------------------------- 831 (1088)
Q Consensus 786 ~~~~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~------------------------------- 831 (1088)
++...+ +..-. ..|...-+.-++.+++.++...+.+|.....+.
T Consensus 418 -~LCNSI-GT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~y 495 (1189)
T KOG2041|consen 418 -QLCNSI-GTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEY 495 (1189)
T ss_pred -eeeccc-CCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeec
Confidence 000000 00011 122222233477888888888888887532110
Q ss_pred -EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 832 -ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 832 -~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
..++.+..++|.+++.+. ++|.++-..|.|+-|++.+..+..... -+..|++++++-+...+|....-|.+.+.|
T Consensus 496 s~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~d 571 (1189)
T KOG2041|consen 496 STKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQD 571 (1189)
T ss_pred cceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeee
Confidence 123445667888888863 799999999999999999887766655 445689999988888999888889999998
Q ss_pred cCCCcee-eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC-CeEEEEEcCcc
Q 001386 911 VDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEEL 963 (1088)
Q Consensus 911 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d-~~i~vwd~~~~ 963 (1088)
++-.... ....+...+. ..|+.+.|..|+..+++-.+ ..+++++-.+.
T Consensus 572 Ld~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndp 621 (1189)
T KOG2041|consen 572 LDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDP 621 (1189)
T ss_pred cccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCc
Confidence 8731111 1111222211 25899999999887777444 46888875543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-10 Score=124.00 Aligned_cols=211 Identities=13% Similarity=0.178 Sum_probs=138.5
Q ss_pred CeeEEEEecCCCEEEEEe--CCcEEEEEcCC-ceeEEE---ec----------CCCCCeEEEEEcCCCCcEEEEEe-CCC
Q 001386 800 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---IM----------PPSPTATSLAFNPHDNNVIAIGM-DDS 862 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~---~~----------~~~~~i~~l~~sp~d~~~lasg~-~dg 862 (1088)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 445678888888888886 67888888876 333222 11 1235678999999 788777654 334
Q ss_pred eEEEEEcCCce--ee--eeec-cccCCeeEEEECCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecCCCCccCCCC
Q 001386 863 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 863 ~i~lwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
.|++|++.... +. ..+. ........++|+||++++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 31 2222 2334578999999999987665 57889999998 5544444444443222211125
Q ss_pred eEEEEEcCCCCEEEEE--eCCeEEEEEcC--ccee--eeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEc--CC
Q 001386 935 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1005 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~--~~ 1005 (1088)
...++++|||++|.++ ..+.|.+|++. +|+. +..+. ......+.++|+|||++|+++. .++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7899999999999996 45689999983 3433 22222 2245589999999999999887 5578999866 57
Q ss_pred CceEEEe
Q 001386 1006 LEVQCRI 1012 (1088)
Q Consensus 1006 ~~~~~~~ 1012 (1088)
|.+....
T Consensus 326 G~l~~~~ 332 (345)
T PF10282_consen 326 GKLTPVG 332 (345)
T ss_dssp TEEEEEE
T ss_pred CcEEEec
Confidence 7765443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-12 Score=143.78 Aligned_cols=223 Identities=14% Similarity=0.114 Sum_probs=145.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
+..+...+.+.+|||||+.||.++.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 459999999886432 3334455678999999995 344667788766
Q ss_pred EEe--CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CCeEEEEECC--CCCceEEecCCCCceEEEEEccCCCE
Q 001386 469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 469 vwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
+|. +.++. +..+..+........| ++||+.++..+. +|...+|.++ .+.... +..........+|||||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCE
Confidence 665 44444 4556555555556666 557777765554 4666777654 333222 2222333446789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC---cEEEEEcCCCeeeEEEeCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++..+..+ +...|++||+.+++......+ .......|+|||+.|+.++.++ .+.+.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 99876432 345799999998875443222 1235678999999998877544 3555565 455555554332
Q ss_pred CCCCCceEEEec
Q 001386 621 GLPENPRICFNK 632 (1088)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1088)
+ .+...+|+|
T Consensus 415 g--~~~~p~wsp 424 (427)
T PRK02889 415 G--DVREPSWGP 424 (427)
T ss_pred C--CCCCCccCC
Confidence 2 356677776
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-11 Score=123.98 Aligned_cols=132 Identities=13% Similarity=0.184 Sum_probs=100.9
Q ss_pred CeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEE--eCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 862 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS--GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 862 g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
.++++.++....++-.+. ..++|.++.|+|+|+-++.+ -.-..+.|+|++. .......+|. -.++.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~egp------RN~~~ 318 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----KPVFDFPEGP------RNTAF 318 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----CEeEeCCCCC------ccceE
Confidence 478888888445554554 57999999999999876654 3456799999987 3345555554 35899
Q ss_pred EcCCCCEEEE-Ee---CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeC------CCcEEEEEcCCCce
Q 001386 940 FHKDQTRFLL-VH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEV 1008 (1088)
Q Consensus 940 fs~dg~~l~~-~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~------dg~v~vwd~~~~~~ 1008 (1088)
|+|.|++|+. |. .|.+.|||+.+.+++..+.. ..-+-+.|+|||++++|++. |+.++||+.....+
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 9999999998 43 36899999999888877553 34566799999999998876 68899999875443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-10 Score=121.66 Aligned_cols=365 Identities=12% Similarity=0.153 Sum_probs=227.5
Q ss_pred EEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE
Q 001386 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1088)
+|...+......+....-++..+++||.|.+|++.... .|.+|....+..+..+.. ..|..+.|+|.+++
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~kY 85 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEKY 85 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccce
Confidence 45444444444455566688899999999999987643 399999887776666654 46899999999999
Q ss_pred EEEEeCCC---------------cEEEEEcCCCeeeEEEeCCCCCCCCc-eEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 593 ILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 593 l~~~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
|.+-+..+ .+.+||..+|..+..+.......... -+.|+-+.+++|-.. ...+.|+++...-.
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~ 164 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIE 164 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccc
Confidence 99866433 49999999999999887654322233 688999888877663 34789998732211
Q ss_pred ccccccc-cCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccc
Q 001386 657 VDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 735 (1088)
Q Consensus 657 ~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 735 (1088)
...+... ...+....++|.+.. ..+..|-
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~~t--------------------- 194 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNH-----------------------------DELAYWT--------------------- 194 (561)
T ss_pred cCchhhccccceeeEEecCCCCC-----------------------------ceEEEEc---------------------
Confidence 1111110 122333333322100 0011111
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
|. ..+..+.+++|.++.+.. +.+..+ ....-..+.|.+.|+++.+
T Consensus 195 --------PE-----k~~kpa~~~i~sIp~~s~------------------l~tk~l----fk~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 195 --------PE-----KLNKPAMVRILSIPKNSV------------------LVTKNL----FKVSGVQLKWQVLGKYLLV 239 (561)
T ss_pred --------cc-----cCCCCcEEEEEEccCCCe------------------eeeeee----EeecccEEEEecCCceEEE
Confidence 11 012345556665543322 111111 1111223556666666553
Q ss_pred Ee------------CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEE--EeCCCeEEEEEcCCceeeeeeccc
Q 001386 816 AS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVISKLEGH 881 (1088)
Q Consensus 816 ~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las--g~~dg~i~lwd~~~~~~~~~l~~h 881 (1088)
-- ...+.|+++..... .......++|...+|.| .++.+++ |-.+-.+.++|++.. +...+ .
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--P 314 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFYF--P 314 (561)
T ss_pred EEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecccccc-eEEec--C
Confidence 21 24588888874333 33335678999999999 4544443 457889999999865 44333 3
Q ss_pred cCCeeEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-------e
Q 001386 882 SKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-------H 951 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-------~ 951 (1088)
...=+.+.|||.+++++.++-| |.+-+||..+.- .++....+. ..+-+.|+|||.++.+. .
T Consensus 315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~k~~~ 385 (561)
T COG5354 315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSEKLRV 385 (561)
T ss_pred CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCccccc
Confidence 3444678999999999998876 679999988743 233233332 24567899999999883 3
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
|..+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 386 Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 386 DNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 678999998744332 356678888888887777664
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=140.18 Aligned_cols=273 Identities=18% Similarity=0.175 Sum_probs=210.3
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.-..+.|+.+|++ ++.|+..|.+-.+|+.++++..... -...|.++.|-.+..++|++
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh-
Confidence 5678899999995 5666677999999999998876533 23678899999999999987
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
....++|||-..-+ +. .++.| ..|..+.|.|-.- +|++++..|.++.-|+.+|+.+..+....+.+..++-+|
T Consensus 189 QK~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 45569999976532 33 34444 4789999999765 899999999999999999999999988888888887754
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
- ...+-+|...|+|.+|.....+....+..|.++|.++++.++|+++++.+. +..+.|||++.-..+.++.. .
T Consensus 262 ~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 Y--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred c--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 4 358889999999999999999999999999999999999999999999987 44599999998877666665 2
Q ss_pred cccccEEEEEEeCCCCEEEEEeCCCcEEEEEc-CCCe--eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
.....+++|..| +++++....+.||.- -.+. ....+-.|.....|..+.|.|-...|-+|...|.-.+.
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 356777888655 555555667999952 2211 11122222223368899999977777777666544443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=138.15 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=115.5
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCccee-----------eeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-----------IRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
..|+|+.|-|.+..++.++-.+|.+.++|..----.. .+.+-.|.-+....+ ...+.--++.|..++
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP--v~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP--VARWHIGEGSINEFA 297 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc--cceeEecccccccee
Confidence 5899999999877777778888999999863211000 011111111111011 111222345899999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
|||||++||+.+.||.++|+|..+.+.+. ..+.--+...|++|||||+ +|++|++|.-|.||.+..++.+..=.+
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEeccc
Confidence 99999999999999999999999977655 2334446799999999999 899999999999999999999999999
Q ss_pred CCccEEEEeee
Q 001386 484 HGAPVYSLCPH 494 (1088)
Q Consensus 484 ~~~~v~~~~~~ 494 (1088)
|..+|..++|.
T Consensus 373 HkSWVs~VaFD 383 (636)
T KOG2394|consen 373 HKSWVSVVAFD 383 (636)
T ss_pred cccceeeEeec
Confidence 99999999996
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-12 Score=126.51 Aligned_cols=273 Identities=13% Similarity=0.121 Sum_probs=194.2
Q ss_pred CCCceeeeecCCCCeEEEEEc-ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGT-NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~-~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
.+.|..++|--|++.=+..+. .|..+............. .||++ .......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 347888888766654333333 555666666655544432 12221 133345677777665 34667
Q ss_pred EEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCC--CcEEEEeCCCCceeEEeccC-----
Q 001386 413 VAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 484 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d--~~i~vwd~~~~~~~~~~~~~----- 484 (1088)
+|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++.... ++++|+.. ..+++||+++.+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7788999999999855311 111123333 45677777777765 67779988 88999999988666544321
Q ss_pred ----CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 485 ----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.-+++++.|.+......|++++.-+.+++||.+.++. +..+.....+++++...|+|+.++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1235566676554467999999999999999987654 5578888889999999999999999865 555999
Q ss_pred EeCCCCceeEE-EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+|.++++.... +.+.. +.++++..+|..+++++++-|..+||+|+.+.+++...-.... .+++.+.++
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecCC
Confidence 99999998877 77777 8999999999999999999999999999999777766554433 456665543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-12 Score=143.37 Aligned_cols=233 Identities=15% Similarity=0.103 Sum_probs=154.1
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
.+......+.|..|...+.+.+|||||++++.+.. .+..|.+||+.+|+... +..+.+
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g 246 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG 246 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence 33445566778888889999999999996444432 24689999999886542 334566
Q ss_pred CeEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCC--cEEEEe
Q 001386 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWD 471 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~--~i~vwd 471 (1088)
.+.+.+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++..+ .++ .|.+||
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence 77889999999988754 4444 4788898887542 35566666778999999995 44444 333 688889
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+.+++.. .+..+...+....| +++|+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.|+..+
T Consensus 321 ~~g~~~~-~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 321 ADGSNPR-RISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCCeE-EeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEE
Confidence 7766543 44334445555666 4577788776543 35788887654432 2222 23567789999999998876
Q ss_pred eCCCCc--eeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
...... ..++++|+..+.. +.+.. . +.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 533221 4688888876554 33332 2 3355556665
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-11 Score=129.83 Aligned_cols=284 Identities=17% Similarity=0.204 Sum_probs=190.4
Q ss_pred cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC-CccEEEEeeeeeCCceEEEEEecCCeEEEEECC
Q 001386 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1088)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 517 (1088)
.|...-+.|..+|||++ ++++|...-.|++||+.+-... |..| ...+..+.+. +.|-..++.-..|++|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 46677889999999997 7888989999999998875543 3333 2233322221 2233344555566666554211
Q ss_pred CCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe
Q 001386 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1088)
Q Consensus 518 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1088)
........ ......|+++.-..-|++++... .|+-+++..|+.+..+.... +.++++..++....|++|+
T Consensus 125 --G~hy~~RI-P~~GRDm~y~~~scDly~~gsg~----evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 125 --GRHYRTRI-PKFGRDMKYHKPSCDLYLVGSGS----EVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT 194 (703)
T ss_pred --Ceeeeeec-CcCCccccccCCCccEEEeecCc----ceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence 11111111 11223455554343444444322 29999999999999988776 8999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeEEEeCCCC---------CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcce
Q 001386 598 DDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR 668 (1088)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 668 (1088)
.+|.|..||.++...+.++..... .+.|+++.|+.+|-.+++|+.+|.+.|||+.+.+++....
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd------- 267 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD------- 267 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-------
Confidence 999999999998877777654322 2346777787777778888888888888877553321110
Q ss_pred eeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCce
Q 001386 669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748 (1088)
Q Consensus 669 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 748 (1088)
T Consensus 268 -------------------------------------------------------------------------------- 267 (703)
T KOG2321|consen 268 -------------------------------------------------------------------------------- 267 (703)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC--CCEEEEEeCCcEEEEEc
Q 001386 749 IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN--DAYLFSASGGVISLYIV 826 (1088)
Q Consensus 749 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~dg~i~iwd~ 826 (1088)
.+..-+|..+.|-+. +..+++.....++|||-
T Consensus 268 ----------------------------------------------h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 268 ----------------------------------------------HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDE 301 (703)
T ss_pred ----------------------------------------------cCCccceeeecccccCCCceEEecchHHhhhccc
Confidence 012223444444332 45677777788999999
Q ss_pred CCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 827 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 827 ~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
.+|+....+. +...+..+|+-| ++-++++|..++.+..|=+..
T Consensus 302 ~~Gk~~asiE-pt~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 302 CTGKPMASIE-PTSDLNDFCFVP-GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccCCceeecc-ccCCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence 9999988887 445599999999 778999999998887776654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9e-11 Score=123.08 Aligned_cols=327 Identities=13% Similarity=0.176 Sum_probs=201.6
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-----------CC
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 599 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~d 599 (1088)
.-+-+.|||.|.+|++-...| |.+|-..+...++.+.. ..|.-+.|||..+||++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 345689999999999987543 99998777766666654 3588899999999999955 22
Q ss_pred CcEEEEEcCCCeeeEEEeCCC-CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcc
Q 001386 600 HVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1088)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 678 (1088)
..++|||+.+|.....+.... ....-.-..||.|++++|.-..+ .|.||+..+-.++.....
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ksl---------------- 344 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSL---------------- 344 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccccc----------------
Confidence 579999999999998887632 22233467899999999988774 788887664221111000
Q ss_pred eeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccce
Q 001386 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1088)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v 758 (1088)
....|....|+|.+..|+.-...
T Consensus 345 ------------------------------------------------------ki~gIr~FswsP~~~llAYwtpe--- 367 (698)
T KOG2314|consen 345 ------------------------------------------------------KISGIRDFSWSPTSNLLAYWTPE--- 367 (698)
T ss_pred ------------------------------------------------------CCccccCcccCCCcceEEEEccc---
Confidence 12234445555554433321110
Q ss_pred EEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCC
Q 001386 759 LMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 759 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
+.. .. ..+.+..+.+++.+++..-+
T Consensus 368 ------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt~nlf 392 (698)
T KOG2314|consen 368 ------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRTKNLF 392 (698)
T ss_pred ------------------------ccC-----------Cc--------------------ceEEEEecCccceeeeccce
Confidence 000 01 12333334444444433322
Q ss_pred CCCeEEEEEcCCCCcEEEEE----------eCCCeEEEEEcCCcee-eeeeccccCCeeEEEECCCCCEEEEEeC---CC
Q 001386 839 SPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG---DA 904 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg----------~~dg~i~lwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~las~s~---Dg 904 (1088)
.-.-..+-|-. +|.+|+.- +.-..+.|+.++.... +..+. -...|...+|-|.|..+++.+. ..
T Consensus 393 nVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~ 470 (698)
T KOG2314|consen 393 NVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKN 470 (698)
T ss_pred eeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcccccc
Confidence 22223344444 45555532 1112455665554432 22222 4567888999999988877654 35
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE----eCCeEEEEEcCcceeeeeeecCCCcCEEEE
Q 001386 905 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPISQA 980 (1088)
Q Consensus 905 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l 980 (1088)
++.+|.+++.. .....+..++.. ....+.|||.|++++++ ..|.+..+|+.-..+...-...| ...+.+
T Consensus 471 tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~v 543 (698)
T KOG2314|consen 471 TVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEV 543 (698)
T ss_pred ceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccc
Confidence 78999988521 223344444432 35799999999999983 46789999988544444333333 345678
Q ss_pred EEeeCCCEEEEEeCC------CcEEEEEcCC
Q 001386 981 TFSCDCRMVFTSFVD------GTLSIHEASN 1005 (1088)
Q Consensus 981 ~fs~dg~~l~s~s~d------g~v~vwd~~~ 1005 (1088)
.|.|.|+|++|+++- ...++|++..
T Consensus 544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred eECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 999999999999864 4456666553
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-10 Score=112.02 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=186.3
Q ss_pred CccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc---ccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 707 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
+..|.+|+++......... .........+-+++++++++|.++.. .|.+..|.++.. +
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~----------------~ 75 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD----------------D 75 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC----------------C
Confidence 4678888876432221111 11225567888999999999988765 477777776542 2
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCC-ceeEEE--ecCCCCC----------eEEEEEc
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATSLAFN 848 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~l~~s 848 (1088)
|.......... ...+.+-++++++|++++++. .|.|.++-+.. |..... ...|.+. +....|.
T Consensus 76 G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 76 GRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred CeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC
Confidence 32122221211 233448899999999999997 68899999865 433221 1123333 7888999
Q ss_pred CCCCcEEEEEeCC-CeEEEEEcCCceeeeeec---cccCCeeEEEECCCCCEEEEEe-CCCcEEEEEcCC--Cceeeeee
Q 001386 849 PHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRS 921 (1088)
Q Consensus 849 p~d~~~lasg~~d-g~i~lwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~~--~~~~~~~~ 921 (1088)
| ++++|++.+-. -.|.+|++..|++...-. .....-+.|+|+|++++..... -+++|.+|..+. ++......
T Consensus 154 P-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 154 P-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred C-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 9 88888876432 379999999886532211 2334568899999999987766 489999999988 45444444
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEEEeC--CeEEEEEcCc--cee-eeeeecCCCcCEEEEEEeeCCCEEEEEeCC-
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTC-LKQWFPISSVPISQATFSCDCRMVFTSFVD- 995 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d--~~i~vwd~~~--~~~-~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d- 995 (1088)
+..+........+...+.+++||++|.++.. +.|.+|.+.. ++. +......+....+...|+++|++|+++..+
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 4444444443456789999999999999744 4688887653 332 222233445667889999999999988865
Q ss_pred CcEEEEEc--CCCceE
Q 001386 996 GTLSIHEA--SNLEVQ 1009 (1088)
Q Consensus 996 g~v~vwd~--~~~~~~ 1009 (1088)
..|.||.. .+|++.
T Consensus 313 d~i~vf~~d~~TG~L~ 328 (346)
T COG2706 313 DNITVFERDKETGRLT 328 (346)
T ss_pred CcEEEEEEcCCCceEE
Confidence 46888855 455543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-09 Score=114.72 Aligned_cols=200 Identities=12% Similarity=0.093 Sum_probs=131.6
Q ss_pred EEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceee-e-
Q 001386 803 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S- 876 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~-~- 876 (1088)
.++++|||+++.+.. +..|.+.|+.+++.+.++.... ...-...+. +..+ +-+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEee
Confidence 578899999888775 6789999999999998887543 222222322 2222 223455444433322 2211 1
Q ss_pred --eecc-----ccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc----cCCCCeEEEEEcCCC
Q 001386 877 --KLEG-----HSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQ 944 (1088)
Q Consensus 877 --~l~~-----h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~fs~dg 944 (1088)
.+.+ ...+ .|++ ||+++..... |+|.+-|+...+......+....... -..+.+.-+++++|+
T Consensus 185 ~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 185 TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 1111 0112 4455 8888776666 99999998765544433333322110 011345569999999
Q ss_pred CEEEEEe---C--------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEE
Q 001386 945 TRFLLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 945 ~~l~~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~ 1011 (1088)
+.+.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.|.|+.+++.+.+
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 9988732 1 57999999999999987764 5889999999999 777666 578899999999999988
Q ss_pred ec
Q 001386 1012 IL 1013 (1088)
Q Consensus 1012 ~~ 1013 (1088)
+.
T Consensus 338 i~ 339 (352)
T TIGR02658 338 VN 339 (352)
T ss_pred ec
Confidence 73
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-09 Score=117.27 Aligned_cols=297 Identities=13% Similarity=0.227 Sum_probs=178.2
Q ss_pred eeEEEEeC--CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC----CCcEEEEEcCCC--ee--eEEEeCCCCCCC
Q 001386 555 SFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD----DHVIKIWDMNKV--QL--LTTIDAGGGLPE 624 (1088)
Q Consensus 555 ~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~----dg~i~iwd~~~~--~~--~~~~~~~~~~~~ 624 (1088)
+.|++|++ .++++...-.... ......++++|++++|++..+ ++.|..|++... ++ +......+. .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~--~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS--S 88 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS--C
T ss_pred CcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC--C
Confidence 34666555 5665533322111 245677889999999999876 578999888764 33 333332222 3
Q ss_pred CceEEEecCCCEEEEEeC-CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 625 NPRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
...++++|++++|+++.. +|.+.++++.....+....
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~------------------------------------------ 126 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV------------------------------------------ 126 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE------------------------------------------
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee------------------------------------------
Confidence 467999999999988874 7889888877431111000
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
..+.+. |. +.+
T Consensus 127 ----------------------------------~~~~~~--g~-----g~~---------------------------- 137 (345)
T PF10282_consen 127 ----------------------------------QTVRHE--GS-----GPN---------------------------- 137 (345)
T ss_dssp ----------------------------------EEEESE--EE-----ESS----------------------------
T ss_pred ----------------------------------eecccC--CC-----CCc----------------------------
Confidence 000000 00 000
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCce--e--EEEec-CCCCCeEEEEEcCCCCcEEE
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK--T--ILTIM-PPSPTATSLAFNPHDNNVIA 856 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~--~--~~~~~-~~~~~i~~l~~sp~d~~~la 856 (1088)
+.........++.++|||+++++.. .+.|.+|++.... . ...+. ......+.++|+| +++++.
T Consensus 138 ---------~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Y 207 (345)
T PF10282_consen 138 ---------PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAY 207 (345)
T ss_dssp ---------TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEE
T ss_pred ---------ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEE
Confidence 0001334566788999999888886 4679999987654 2 22232 3446789999999 677665
Q ss_pred E-EeCCCeEEEEEcC--Ccee--eeeecc----c--cCCeeEEEECCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeee
Q 001386 857 I-GMDDSTILIYNAR--SSEV--ISKLEG----H--SKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSL 922 (1088)
Q Consensus 857 s-g~~dg~i~lwd~~--~~~~--~~~l~~----h--~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~--~~~~~~~~~~ 922 (1088)
+ .-.+++|.++++. +++. +..+.. . ......|+++|||++|.++. .+.+|.+|+++ ++.......+
T Consensus 208 v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 208 VVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE
T ss_pred EecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE
Confidence 4 4567789999988 4432 222221 1 12578899999999987665 56789999994 3444333333
Q ss_pred ecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEc--CcceeeeeeecCCCcCEEEEEE
Q 001386 923 QTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVPISQATF 982 (1088)
Q Consensus 923 ~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~--~~~~~~~~~~~~h~~~v~~l~f 982 (1088)
... +. ....++|+|||++|+++ .++.|.+|++ ++|.....-.........||.|
T Consensus 288 ~~~-G~-----~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 288 PTG-GK-----FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EES-SS-----SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred eCC-CC-----CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 321 22 36899999999999996 4568988866 5666544322122455666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=119.06 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCeEEEEEcCC-ceeeeeecc-ccCCeeEEEECCCCCEEEEE--eCCCcEEE
Q 001386 843 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 908 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~----------dg~i~lwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~las~--s~Dg~i~i 908 (1088)
..+.|+| .|.+|++-.. -|...||-++. +..+..+.- ..++|.+++|+|+|+.+|++ ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 5665554332 13445555522 223344432 45679999999999987655 35679999
Q ss_pred EEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCcceeeeeeecCCCcCEEEEEEee
Q 001386 909 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 984 (1088)
Q Consensus 909 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 984 (1088)
||++.. .+..... ..+..+.|||+|++|+++. .|.|.+||+.+.+.+.... ...++.++|||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSP 153 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcC
Confidence 999731 2222221 1467899999999999953 3679999999888887633 34578999999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCCCceEEEec
Q 001386 985 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 985 dg~~l~s~s~------dg~v~vwd~~~~~~~~~~~ 1013 (1088)
||+++++++. |+.++||+.. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999998875 7889999985 77766544
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=122.53 Aligned_cols=170 Identities=21% Similarity=0.262 Sum_probs=129.5
Q ss_pred chhHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh---------HHHHHHHhcCccHHHHHHhhccCcc--ccCccccch
Q 001386 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFTK--VDDNRYSTK 71 (1088)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~--~~~~~~~~~ 71 (1088)
...+|+.|||+.||-..||.++|..+.+|+|+..+ -..+|.+|..|+-++|+..+..+-+ ++.+. .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence 45789999999999999999999999999999661 4778999999999999999998832 34332 3
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccc-cccCCChHHHHHHHHHHHh
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLS-KYYGDALSARKNMMLELKQ 150 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~R~~l~~~l~~ 150 (1088)
+.|.|.+|+++||+..+..++|+.|+|++|.|...-+++.++.|+..|..--++....-. .| --....|.++...+..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999887888888888888765443222100 00 0013356667777776
Q ss_pred hcccCccccccccCCCcchHHHHHHHHHHHHHHH
Q 001386 151 IIEANPILQGKLKFPSIKRQRLRRLINQSLNWQH 184 (1088)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~ 184 (1088)
.|-...-. -...+|..||+.-+..|.
T Consensus 180 aiL~~~~~--------~~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 180 AILASQEH--------ESEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHHHhcc--------cccchHHHHHHHHHHHHH
Confidence 66543220 125678888866666664
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-11 Score=116.51 Aligned_cols=339 Identities=14% Similarity=0.176 Sum_probs=202.7
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
..++.++|+. +.++....-|..+-+++.+.|.+++||--. .++.-..+... ....+.++.+.++.+.|++|-..|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecc
Confidence 3456677777 788888888888999999999999999543 45544444332 234578999999999999999999
Q ss_pred cEEEEeCCCC----CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCC
Q 001386 645 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1088)
Q Consensus 645 ~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 720 (1088)
++.-+.+... ...+....|...+..+-++.. ...+++.+.|..+ .|.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~----------------------~e~V~s~~~dk~~-~~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT----------------------HEWVLSTGKDKQF-AWH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC----------------------ceeEEEeccccce-EEE------
Confidence 9988876533 223333445555555444421 2222333222211 010
Q ss_pred CcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCC
Q 001386 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEA 800 (1088)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1088)
++ ..|. .+--|.+ . ..
T Consensus 142 --------------------c~-e~~~---------~lg~Y~~-------------------------~---------~~ 157 (404)
T KOG1409|consen 142 --------------------CT-ESGN---------RLGGYNF-------------------------E---------TP 157 (404)
T ss_pred --------------------ee-ccCC---------cccceEe-------------------------e---------cc
Confidence 00 0000 0000000 0 00
Q ss_pred eeEEEEecCCCEEEEEe-CCcEEEE--EcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-eee
Q 001386 801 VPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VIS 876 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~-~~~ 876 (1088)
.+++.+.-. +...|. .|.|..- ..+....+.++.+|.+.+++++|.| ...+|.+|..|..|.+||+.-.+ ...
T Consensus 158 ~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~ 234 (404)
T KOG1409|consen 158 ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAY 234 (404)
T ss_pred CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceee
Confidence 000000000 222332 3333332 2344667888999999999999999 88999999999999999997654 346
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee-----cCCC--------------------CccC
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ-----TPDG--------------------VMTL 931 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~-----~~~~--------------------~~~~ 931 (1088)
.+.+|.+.|..+...+--+.|.+++.||.|.+|+++........-+. .... |...
T Consensus 235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crk 314 (404)
T KOG1409|consen 235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRK 314 (404)
T ss_pred eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhh
Confidence 78899999999999888899999999999999999864322211000 0000 0000
Q ss_pred CC-CeEEEEEcCCCCEEEEEeCCeEEEEEcCcc-------eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 932 AP-SETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 932 ~~-~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~-------~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
-+ .+-..+-+.-..+-..+.+-.+++.|.-.. ..++.+... ...|+.+.+-.+-..|+|++.|..|.|||+
T Consensus 315 cg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~iwd~ 393 (404)
T KOG1409|consen 315 CGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIKIWDV 393 (404)
T ss_pred hhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEEEEec
Confidence 00 111111122222222344445555553211 112222211 457888999888889999999999999998
Q ss_pred CC
Q 001386 1004 SN 1005 (1088)
Q Consensus 1004 ~~ 1005 (1088)
.+
T Consensus 394 ~~ 395 (404)
T KOG1409|consen 394 RS 395 (404)
T ss_pred hh
Confidence 75
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-10 Score=116.46 Aligned_cols=270 Identities=14% Similarity=0.128 Sum_probs=171.1
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC----------CCEEEEEEcc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 426 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~----------dg~i~vwd~~ 426 (1088)
++|.+.|..+++.+.+... |. .-..+ +||||+.|.++.. +..|.+||+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8999999999987765221 11 11224 9999999988755 6789999999
Q ss_pred CCCcccceeEecc-C---CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE
Q 001386 427 GGSDARQQLEIDA-H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502 (1088)
Q Consensus 427 ~~~~~~~~~~~~~-h---~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 502 (1088)
+.+.+..+..-.. + ......++++|||+.+++.--+.+..|-+.|+.+++.+.++....... .+ +..+.. .
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~---vy-~t~e~~-~ 160 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH---IF-PTANDT-F 160 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE---EE-EecCCc-c
Confidence 9987664321000 1 223447899999995333333458899999999999998887532111 11 111211 2
Q ss_pred EEEecCCeEEEEECCCCCceE-----EecCCCCce-EEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCC-----ceeEE
Q 001386 503 FSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKRT 570 (1088)
Q Consensus 503 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v-~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~~ 570 (1088)
...+.||......++...... .+......+ ..-.|++ +|+++.+.. ++.|++.|+... .....
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceeee
Confidence 234456655554443322211 111100000 0113456 888887765 366999995432 32332
Q ss_pred Eeccc----cccccEEEEEEeCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC-
Q 001386 571 YQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT- 635 (1088)
Q Consensus 571 ~~~~~----~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~- 635 (1088)
+.... -..+.+.-+++++++++++... ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp 312 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKP 312 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCe
Confidence 22111 0112334499999999988843 22579999999999999988643 468999999999
Q ss_pred EEEEEe-CCCcEEEEeCCCCCccccc
Q 001386 636 LLAVIA-NENRIKILETPESNSVDAA 660 (1088)
Q Consensus 636 ~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1088)
+|++.. .++.|.++|..+++.+..+
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777666 5788999999999887765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-10 Score=131.00 Aligned_cols=238 Identities=11% Similarity=0.037 Sum_probs=147.6
Q ss_pred hhheeecccCCCCceeeeecCCCCe--EEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~--lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
+...+.|..+...+..-+|||||+. ++.+...+ ..|.+.++.+|+... +....+..
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~ 233 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQ 233 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCc
Confidence 3444556656667788899999975 33344444 358888888886543 22234455
Q ss_pred EEEEECCCCCEEEEEeC-----CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE--eC
Q 001386 400 NRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DA 472 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw--d~ 472 (1088)
...+|||||+.||..+. +..+.+|++.++..-.......++.......+|+|||+. ++++...+|...+| ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEEC
Confidence 67899999999998653 223455777754211111112223334567899999995 23333456655555 44
Q ss_pred CC-CceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 473 VT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 473 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
.. +.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cccccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEE
Confidence 32 3334455545555666667 5577777766543 368999998876654332 234567789999999998765
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
.. .+...|+++|+.+++......+ . +.+...+|+|-.
T Consensus 390 ~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 390 GN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 43 3466799999988876544432 2 345667777643
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-11 Score=118.69 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=103.8
Q ss_pred CCCeeEEEEecC--CCEEEEEe-CCcEEEEEcCCc-eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001386 798 QEAVPCFALSKN--DAYLFSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 873 (1088)
Q Consensus 798 ~~~v~~~~~s~d--g~~l~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~ 873 (1088)
.-.++++.|-+. ...+|++. -+.+++||...+ +++..+.-....++++...| +++++++|..-|.+..||+++++
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCce
Confidence 345677888877 77888887 799999999865 45677777788999999999 89999999999999999999999
Q ss_pred eeee-eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 874 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 874 ~~~~-l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~ 915 (1088)
++.. +.+-.+.|++|..+|.+++||++|-|+.|||+|+++.+
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 8877 89999999999999999999999999999999999854
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-09 Score=106.30 Aligned_cols=255 Identities=14% Similarity=0.190 Sum_probs=175.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe----CCcEEEEEcCC--ceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCC-CeEEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD-STILIY 867 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d-g~i~lw 867 (1088)
....++-++++|+++.|.++. .|.|..|.+.. |+.. ..........+.+++++ ++++|+++... |.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566788899999999888875 46788887764 4432 22222334448899999 88888887754 799999
Q ss_pred EcCC-ceeee--eeccccCC----------eeEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 868 NARS-SEVIS--KLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 868 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~dg~~las~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
-++. |.+.. .+..|.+. +-...|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 44321 22336555 88899999999999885 455 9999999877555444444333
Q ss_pred CCeEEEEEcCCCCEEEEE--eCCeEEEEEcCcc--ee--eeeeec--C---CCcCEEEEEEeeCCCEEEEEe-CCCcEEE
Q 001386 933 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL--TC--LKQWFP--I---SSVPISQATFSCDCRMVFTSF-VDGTLSI 1000 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~--~~--~~~~~~--~---h~~~v~~l~fs~dg~~l~s~s-~dg~v~v 1000 (1088)
....+++|+|++++.-+. -+++|-+|..... +. ++.+.. . -.....++..++||++|.++- ....|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999988774 5689999998863 22 222110 0 156678899999999998764 2347888
Q ss_pred EEcCCCce-EEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCC-cEEEEeCCCCCCCcccc
Q 001386 1001 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAVL 1066 (1088)
Q Consensus 1001 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg-~v~~w~l~~~~~~~~~~ 1066 (1088)
+.+....- +.... +.+. ....|..+.|+| +|++|+++..++ .|.+|.+....++....
T Consensus 271 f~V~~~~g~L~~~~---~~~t----eg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 271 FSVDPDGGKLELVG---ITPT----EGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEEcCCCCEEEEEE---Eecc----CCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 87665422 22221 1111 124577788999 788888888776 89999998877665543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-10 Score=132.77 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=145.8
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
....+.+..+...+...+|||||++++.+...+ ..|.+||+.+|+... +....+.+..
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~ 247 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGA 247 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCC
Confidence 344466667777899999999999655554433 368999999886543 2223344557
Q ss_pred EEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCc
Q 001386 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 476 (1088)
Q Consensus 402 l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~ 476 (1088)
.+|||||++|+.. +.+| .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 8999999998854 3444 6888899987532 34456666777899999995 233333333 57778888877
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecC-C--eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
... +...........| +++|+.++..+.+ + .|.+||+.++........ .......|+|||+.++..... .+
T Consensus 323 ~~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g 396 (430)
T PRK00178 323 AER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QG 396 (430)
T ss_pred EEE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CC
Confidence 543 2211122223445 4566777766543 3 478889887665432222 222356899999999887653 34
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
...+++++... ...+.+.... +.+...+|+|
T Consensus 397 ~~~l~~~~~~g-~~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 397 RGVLMLVSING-RVRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred ceEEEEEECCC-CceEECcCCC---CCcCCCccCC
Confidence 56688888754 3334444333 4455566665
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-10 Score=121.08 Aligned_cols=318 Identities=10% Similarity=0.109 Sum_probs=201.7
Q ss_pred CCCCCCCchhhhcccccCCcccCCCch-hheeecccCCCCceeeeecCCCCeEEEEEcc-----------cCcEEEEecC
Q 001386 298 PDYSPKSSLKKEMFQSFGETSFSDFPK-TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN-----------VGDTGLWDVN 365 (1088)
Q Consensus 298 ~~fsP~~s~~~~~~~~~~~~~~~~~p~-~~~~~l~~h~~~V~~v~~spdg~~lla~g~~-----------dg~i~iwd~~ 365 (1088)
..|||.++++.........- +.=+. ..++.+ .|. .|..+.|||+.++ |+|=+. ...++|||+.
T Consensus 216 v~wSP~GTYL~t~Hk~GI~l--WGG~~f~r~~RF-~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIAL--WGGESFDRIQRF-YHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred EEecCCceEEEEEeccceee--ecCccHHHHHhc-cCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEcc
Confidence 35888888886654422111 11110 111221 465 8999999999995 665443 1579999999
Q ss_pred CCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEE
Q 001386 366 SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 445 (1088)
Q Consensus 366 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~ 445 (1088)
+|...+.++. +.+....-.-+.||.|++|+|--..++ |.||+..+-..+.. ..+ .-..|.
T Consensus 291 tG~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~lld~-Ksl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLLDK-KSL--KISGIR 350 (698)
T ss_pred ccchhcceec----------------cCCCccccceEEeccCCceeEEeccce-EEEEecCceeeecc-ccc--CCcccc
Confidence 9998876442 112222223478999999999887755 99999876332211 011 224688
Q ss_pred EEEecCCCCcEEEEEEeC-----CCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEE----------ecCCe
Q 001386 446 DLAFSAPCKQISVITCGD-----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGK 510 (1088)
Q Consensus 446 ~~~~s~d~~~l~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~ 510 (1088)
...|+|.+. +|+--.. -..+-+-.+.+++.+++-.-|. |..+.++...+|.+|..- +.-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 899999988 4543221 1346677777777776655443 555566667777777653 11223
Q ss_pred EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC-C---ceeEEEeccccccccEEEEEE
Q 001386 511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSVVHF 586 (1088)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~~~v~~~~~ 586 (1088)
+.|+.++..........-...|...+|-|.|..+++.+.. +...++..|.+.+ . .++..+.. ...+.+.|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfw 500 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFW 500 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc-----cccceEEE
Confidence 5667666665555444455678899999999998877653 3366788887763 2 23333332 45788999
Q ss_pred eCCCCEEEEE---eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC------CcEEEEeCC
Q 001386 587 DTAKDQILAA---GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETP 652 (1088)
Q Consensus 587 ~~~~~~l~~~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~ 652 (1088)
+|.|++++.+ |..|.+.++|+.-.....+-. ..+ ...+.+.|.|.|+++++++.. .-.++|+..
T Consensus 501 sPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 501 SPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cCCCcEEEEEEecccccceEEEecchhhhhhccC-ccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999999885 467899999987422222211 111 235779999999999998863 445666655
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-11 Score=132.85 Aligned_cols=230 Identities=14% Similarity=0.096 Sum_probs=143.6
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccC--cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
+...+.+..+...+.+.+|||||++++.+...++ .|.+||+.+++.... ....+....
T Consensus 207 G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~ 266 (448)
T PRK04792 207 GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGA 266 (448)
T ss_pred CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCC
Confidence 3334566667778999999999996555544333 588999988864321 112233446
Q ss_pred EEECCCCCEEEEE-eCCCE--EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCc
Q 001386 402 VVWSPDGSLLGVA-YSKHI--VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 476 (1088)
Q Consensus 402 l~~s~dg~~las~-~~dg~--i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~ 476 (1088)
.+|||||+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 8999999988764 45554 888888877532 34455566778899999995 233343344 46677887776
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEec-CCe--EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
... +..........+| ++||++++..+. ++. |.++|+.++..... ... .......|+|||+.|+..... .+
T Consensus 342 ~~~-Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~~-~g 415 (448)
T PRK04792 342 VSR-LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTTY-QG 415 (448)
T ss_pred EEE-EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEec-CC
Confidence 543 2212222233455 556667766554 343 55567766654332 221 122345899999999887653 34
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
...+++++. +|...+.+.... +.+...+|+|
T Consensus 416 ~~~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 416 KQVLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred ceEEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 566888886 565666665544 4566667776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-10 Score=126.10 Aligned_cols=242 Identities=13% Similarity=0.090 Sum_probs=149.7
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE---EEeCC--CEEEEEEccCCCcc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA 431 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la---s~~~d--g~i~vwd~~~~~~~ 431 (1088)
..|.+.|...+.... +......+..-+|||||+.++ +...+ ..|.+.++.+|+..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777776654332 333556677889999998633 33333 35888899887643
Q ss_pred cceeEeccCCCCEEEEEecCCCCcEEEEEEeC----CCcEEEEeCCCC---ceeEEeccCCccEEEEeeeeeCCceEEEE
Q 001386 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS 504 (1088)
Q Consensus 432 ~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~----d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 504 (1088)
+ +....+.....+|||||+.+ +++... +..+..||+.++ +......++.......+| ++||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence 2 33344555678999999953 333322 223445777653 333333322233345566 567777666
Q ss_pred Ee-cCCeEEEEE--CCC-CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccccc
Q 001386 505 IS-VDGKIKAWL--YDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1088)
Q Consensus 505 ~~-~dg~i~iwd--~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1088)
.+ .+|...+|. +.. ......+......+....|||||+.|+..... .+...|++||+.+++......+ . ..
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~ 372 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN 372 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence 55 467655654 432 22233344444566788999999999987653 3456799999998876544332 2 34
Q ss_pred EEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 581 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 581 v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+....|+|||+.|+..+. ...|+++|+.+++........+ .+...+|+|-
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCC
Confidence 667899999998876443 3568889998877655443222 3566788774
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-10 Score=126.89 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=141.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~-- 466 (1088)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34467789999999999999987543 258999998876422 2222333457899999995 3344566664
Q ss_pred EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CCe--EEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
|.+||+.+++. ..+..+.......+|+ +||+.++..+. ++. |.++|+.+++.... ..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCE
Confidence 77789887764 3444455555666774 46666665543 444 66667766554332 222223345789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-C--cEEEEEcCCCeeeEEEeCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--VIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+.+ + .+++++. +|.....+....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 334568889988886533 32211 11234799999998876543 3 3677776 555566665432
Q ss_pred CCCCCceEEEec
Q 001386 621 GLPENPRICFNK 632 (1088)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1088)
+ .+...+|+|
T Consensus 437 g--~~~~p~Wsp 446 (448)
T PRK04792 437 G--EVKSPAWSP 446 (448)
T ss_pred C--CcCCCccCC
Confidence 2 356677776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.8e-10 Score=126.48 Aligned_cols=223 Identities=15% Similarity=0.126 Sum_probs=142.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--c
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~ 466 (1088)
+..+...+...+|||||++||..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34467789999999999999887644 369999999886432 3333345567899999995 333455555 5
Q ss_pred EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
|.+||+.+++.. .+..+........| ++||+.++..+. +| .|.++|+.+++.... ...........|+|||+.
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~--spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFW--GKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 888899887654 45445544555566 456666655543 33 477777766654332 222233345789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeEEEeCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++..... ++...|.++|+.+++... +.... ......|+|+|+.++..+.+ ..+.++++.. .....+....
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~-lt~~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRI-LTDTS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC
Confidence 9987643 234569999999886533 32211 12245899999999886643 3466777743 3334444322
Q ss_pred CCCCCceEEEec
Q 001386 621 GLPENPRICFNK 632 (1088)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1088)
+ .+...+|+|
T Consensus 418 g--~~~~p~ws~ 427 (430)
T PRK00178 418 G--EVREPSWSP 427 (430)
T ss_pred C--CcCCCccCC
Confidence 2 355666765
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-10 Score=127.78 Aligned_cols=210 Identities=15% Similarity=0.087 Sum_probs=138.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--c
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~ 466 (1088)
+..+...+...+|||||++||.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566789999999999999988644 47999999987532 23345566778999999985 334444444 5
Q ss_pred EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
|.+||+.++... .+..+........| +++|+.|+..+. ++ .|.++|+.+.+.. .+.........+.|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~--s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSW--SPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEE--CCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence 888998877643 44444444445566 457777766554 33 5777787765533 33334456677899999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC---cEEEEEcCCCeeeEEEe
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 617 (1088)
++.+..+. +...|.+||+.++... .+.... ......|+|++++|+..+.++ .+++.+. +++....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeE-EccCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887543 3557999999886543 232211 234457999999998877554 3455554 344444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=130.86 Aligned_cols=216 Identities=19% Similarity=0.159 Sum_probs=141.4
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
....+.|..+...+...+|||||++++.+...+ ..|++||+.+++... +..+.+.+.+
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~ 238 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA 238 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 344566667777899999999999644443322 479999999886443 2234556778
Q ss_pred EEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCC--cEEEEeCCCC
Q 001386 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG 475 (1088)
Q Consensus 402 l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~--~i~vwd~~~~ 475 (1088)
++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+. ++..+ .++ .|.++|+.++
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence 9999999988754 3333 5889999887532 34455555667899999994 44433 333 5888888777
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCC---eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
+.. .+..+...+....| +++|.+++.++.++ .|.+||+.+...... ... .......|+|||+.|+.....+
T Consensus 313 ~~~-~l~~~~~~~~~~~~--spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l-~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 313 EVR-RLTFRGGYNASPSW--SPDGDLIAFVHREGGGFNIAVMDLDGGGERVL-TDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred CEE-EeecCCCCccCeEE--CCCCCEEEEEEccCCceEEEEEeCCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 643 44434455566666 45777888887776 788899887544332 222 2334568999999998887543
Q ss_pred CceeEEEEeCCCCceeEEEe
Q 001386 553 GESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~ 572 (1088)
+...+++.+.. +.....+.
T Consensus 387 ~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CcEEEEEEECC-CceeeECC
Confidence 34556666643 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.8e-10 Score=108.99 Aligned_cols=356 Identities=14% Similarity=0.207 Sum_probs=211.3
Q ss_pred CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-----eeEEeccCC------------ccEEEEeeeeeCCceEEE
Q 001386 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 503 (1088)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l~ 503 (1088)
..-|.++.|...|. +|++|..+|.|.++.-.... ....+..|. ..|+.+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34688999999999 89999999999999633221 223344443 457778888888888899
Q ss_pred EEecCCeEEEEECCCCCceEE-----ecCCCCceEEEEE---ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe-cc
Q 001386 504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GL 574 (1088)
Q Consensus 504 s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~---s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~ 574 (1088)
..+.|.+|++|.+........ .......+.++.. .+....+.+ .+.+.+. .|
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea-------------------~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA-------------------SPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee-------------------eeeeeccccc
Confidence 999999999998876544330 0111112222211 111111111 1122222 33
Q ss_pred ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-eeeEEEeCCCC-----CCCCceEEEecC-CCEEEEEeCCCcEE
Q 001386 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGG-----LPENPRICFNKN-GTLLAVIANENRIK 647 (1088)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~v~~s~~-~~~l~~~~~dg~i~ 647 (1088)
. ..|+++.++.|+..++++ +|=.|.+|+++-- +.......... ..-|++..|+|. .+.++..+..|+|+
T Consensus 164 t---yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 164 T---YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred e---eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3 789999999999888876 4778999998642 22222222111 124678889994 56788888899999
Q ss_pred EEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeee
Q 001386 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 727 (1088)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 727 (1088)
+.|+.....-... -+++.
T Consensus 240 LcDmR~~aLCd~h-------------------------------------------------sKlfE------------- 257 (433)
T KOG1354|consen 240 LCDMRQSALCDAH-------------------------------------------------SKLFE------------- 257 (433)
T ss_pred Eeechhhhhhcch-------------------------------------------------hhhhc-------------
Confidence 9998843211000 00000
Q ss_pred cCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe
Q 001386 728 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 807 (1088)
Q Consensus 728 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1088)
.|. .|..+- ... +--..|..+.|+
T Consensus 258 epe------------dp~~rs--------------------------------------ffs------eiIsSISDvKFs 281 (433)
T KOG1354|consen 258 EPE------------DPSSRS--------------------------------------FFS------EIISSISDVKFS 281 (433)
T ss_pred ccc------------CCcchh--------------------------------------hHH------HHhhhhhceEEc
Confidence 000 000000 000 123456778888
Q ss_pred cCCCEEEEEeCCcEEEEEcC-CceeEEEecCCC------------CCe---EEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 808 KNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 808 ~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
++|+++++-+--+|++||++ ..+++.+..-|. ..| ..++|+. ++.++++|+....+++|++..
T Consensus 282 ~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 282 HSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCC
Confidence 88888888877889999984 455555555443 122 4578988 788999999999999999776
Q ss_pred cee-eeeeccccCC--eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 872 SEV-ISKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 872 ~~~-~~~l~~h~~~--V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
|.. -.++.+.... ...+ ..-+.+.+++......+|-- .++.. ..+.+.+|+|..+.+|
T Consensus 361 gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd------------~ldf~----kkilh~aWhp~en~ia 421 (433)
T KOG1354|consen 361 GSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVD------------ALDFR----KKILHTAWHPKENSIA 421 (433)
T ss_pred CcceeecccccccCCccccc---ccceeeecCCCccccccccc------------hhhhh----hHHHhhccCCccceee
Confidence 643 2333332222 1111 11123344443332211110 01111 1477889999999999
Q ss_pred EEeCCeEEEEE
Q 001386 949 LVHETHLAIYE 959 (1088)
Q Consensus 949 ~~~d~~i~vwd 959 (1088)
++.-+.+++|.
T Consensus 422 ~aatnnlyif~ 432 (433)
T KOG1354|consen 422 VAATNNLYIFQ 432 (433)
T ss_pred eeecCceEEec
Confidence 98777777763
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-10 Score=113.17 Aligned_cols=267 Identities=12% Similarity=0.165 Sum_probs=175.4
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccc-cccceeeeecCCCCCeEEEEECCCCC-
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC-SMLFKTALVRDPGVSVNRVVWSPDGS- 409 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~h~~~V~~l~~s~dg~- 409 (1088)
...+-|.+|.|..+|. +||+|..+|.|.++.-..... .. ++....... ...|.-..--.-...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~e--y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-GE--YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-cc--eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 3455899999999999 699999999999987543221 01 110000000 00010000112346889999998654
Q ss_pred -EEEEEeCCCEEEEEEccCCCccc------------------c--------------eeE-eccCCCCEEEEEecCCCCc
Q 001386 410 -LLGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 410 -~las~~~dg~i~vwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~~ 455 (1088)
.+...+.|.+|++|.+....... . .+. -.+|+.-|+++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56666799999999986432211 0 011 135777899999999998
Q ss_pred EEEEEEeCCCcEEEEeCCCCcee---EEeccC-----CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc------
Q 001386 456 ISVITCGDDKTIKVWDAVTGSRT---YSFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA------ 521 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~~~~~~---~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------ 521 (1088)
.++++. |=.|.+|+++--..- ..++.+ ...|++..|+|... ..++-.+..|+|++.|++....
T Consensus 178 -t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 566654 788999998743222 222222 34577888888754 5777788899999999984321
Q ss_pred eEEec----------CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC-CCCceeEEEeccccc---------ccc-
Q 001386 522 RVDYD----------APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQLQ---------HNS- 580 (1088)
Q Consensus 522 ~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~~---------~~~- 580 (1088)
..... ..-..|..+.|+.+|+++++-. -.+|.+||+ ...+.+.+++.|..- .+.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 11111 1112577899999999999843 467999999 456777777766521 122
Q ss_pred --EEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 581 --VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 581 --v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2457899999999999999999999966543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-10 Score=110.90 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=112.4
Q ss_pred EEEEecCCCCcEEEEEEe--------CCCcEEEEeCC-CCceeEEecc-CCccEEEEeeeeeCCceEEEEEecCCeEEEE
Q 001386 445 NDLAFSAPCKQISVITCG--------DDKTIKVWDAV-TGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514 (1088)
Q Consensus 445 ~~~~~s~d~~~l~l~s~s--------~d~~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 514 (1088)
..+.|+++|+.+++.+.. .-+...+|-++ .+.....+.- ..++|.+++|+|+.+.-.++.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999975444441 11234555542 2334444432 3457999999765432223445567899999
Q ss_pred ECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEE
Q 001386 515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1088)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1088)
|++ ......+ ....+..+.|+|+|+++++++.. ...+.|.+||.++.+.+..... ..+..++|+|+|++++
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKKKKISTFEH-----SDATDVEWSPDGRYLA 159 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCCEEeecccc-----CcEEEEEEcCCCCEEE
Confidence 996 3333333 45677889999999999998854 2356799999998888776653 3478999999999999
Q ss_pred EEe------CCCcEEEEEcCCCeeeEEEe
Q 001386 595 AAG------DDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 595 ~~s------~dg~i~iwd~~~~~~~~~~~ 617 (1088)
+++ .|..++||+.. |+.+....
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEecc
Confidence 976 37889999984 66665543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=117.72 Aligned_cols=353 Identities=15% Similarity=0.145 Sum_probs=225.0
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE--EecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
.++.++||...+++....+..+ -+++.+.|.++++|--+...... .......+++++.+.++.+.|+++-. .
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence 4567788998898887766554 59999999999999544333222 22334557899999999999999875 3
Q ss_pred eeEEEEeCC----CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 555 SFLVEWNES----EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 555 ~~i~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
+.+.-+.+. .....+.+..|. ..+..+-|+....++++.+.|..+.---.+.+..+........ ..+..+
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~ 163 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF 163 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence 446655443 445566666676 8899999998889999999998876555566655544332211 111222
Q ss_pred ecCCCEEEEEeCCCcEEEEeCC--CCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 631 NKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
.-. +...|...|.|.+..+. .-..+..+.+|.+.+.++++. +....++++..|.
T Consensus 164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASDH 219 (404)
T ss_pred eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEeccccC
Confidence 211 55566667777765554 336677888999999999998 4466788999999
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCC---------CCCCCccc
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS---------TEVPPRLY 779 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~---------~~~~~~~~ 779 (1088)
.+.+||+.......... .+|...|..+...+--+.+++++.||.|.+|+++....... ...++..|
T Consensus 220 ~vi~wdigg~~g~~~el-----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYEL-----QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ceEEEeccCCcceeeee-----ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 99999987554444333 34888888888888889999999999999999876543221 22223333
Q ss_pred CCCCCCcceeeccCCC---CCCCCeeEEEEecCCCEEEEEeCCcEEEEEcC-----C--ceeEEEecCCCCCeEEEEEcC
Q 001386 780 QPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSASGGVISLYIVM-----T--FKTILTIMPPSPTATSLAFNP 849 (1088)
Q Consensus 780 ~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~-----~--~~~~~~~~~~~~~i~~l~~sp 849 (1088)
+...--......+... .-...+...+-+....+...+..-.+++-|.- + ...+..+......|+++.+..
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe 374 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE 374 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence 3321100000000000 00112222222222223333333334444421 1 122333333346789999887
Q ss_pred CCCcEEEEEeCCCeEEEEEcCC
Q 001386 850 HDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 850 ~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
.-.+|++++.|..|+|||+.+
T Consensus 375 -tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 -TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -hccceeecCCceEEEEEechh
Confidence 667999999999999999874
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-09 Score=117.04 Aligned_cols=188 Identities=14% Similarity=0.229 Sum_probs=147.2
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCceeEEEecCCC---CCeEEEEE------cC-------------CCCcEEEEEeCCCeE
Q 001386 808 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAF------NP-------------HDNNVIAIGMDDSTI 864 (1088)
Q Consensus 808 ~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~------sp-------------~d~~~lasg~~dg~i 864 (1088)
|...++|... ||.+++|+...++....+.+.. +..++..| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4556777776 8999999999998887776321 22223222 22 145688889999999
Q ss_pred EEEEcCCceeeeeec--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 865 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
.+|++..|+....+. .|.+.|+++.++.+-..|.|++.|+.+..|+..... .+....+... .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999988886 499999999999999999999999999999998844 2222222222 588999999
Q ss_pred CCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeC-----CCEEEEE-eCCCcEEEEEcCC
Q 001386 943 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFTS-FVDGTLSIHEASN 1005 (1088)
Q Consensus 943 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~s~-s~dg~v~vwd~~~ 1005 (1088)
||..++++ .++|.+||+++++.+.. +.||.++|+++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 37899999999999988 6699999999999987 7776644 4566788887665
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.5e-10 Score=117.83 Aligned_cols=194 Identities=12% Similarity=0.183 Sum_probs=155.7
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEec------C------------CCCcEEEEEEeCCCc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 466 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------d~~~l~l~s~s~d~~ 466 (1088)
.|-+.|+|....||.+++||+..++....+.....-++..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999987654333333334455555552 2 122237888999999
Q ss_pred EEEEeCCCCceeEEec--cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEE
Q 001386 467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 544 (1088)
|.++++..|+....+. .|.+.|+++.++ .+-..|.+++.|+.+..|+................+.+++.+|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888775 689999998774 344689999999999999999999999999888899999999999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC-----CCEEEEE-eCCCcEEEEEcCC
Q 001386 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK 609 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 609 (1088)
++++. .|.+||+++++.+..|.||. ++|+++.|..+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98853 49999999999999999999 99999999877 7777774 3556677786654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-08 Score=112.72 Aligned_cols=209 Identities=9% Similarity=0.069 Sum_probs=125.3
Q ss_pred eCCcEEEEEcCCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC----C---
Q 001386 817 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 884 (1088)
Q Consensus 817 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~----~--- 884 (1088)
.++.+..||.++|+.+.......... .+..+. ++ .++.+..+|.+..+|..+|+.+........ .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 36677777777777766654322211 112222 33 677788899999999999987654331100 0
Q ss_pred eeEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE-EEeCCeEEEEEcC
Q 001386 885 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE 961 (1088)
Q Consensus 885 V~~l~~s~--dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~-~~~d~~i~vwd~~ 961 (1088)
+..+.-+| .+..+..++.+|.+..||..+++..-... ... ..... .++..+. ...++.++.+|..
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence 00011111 35577778889999999999876332111 111 11122 2344444 4678999999999
Q ss_pred cceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCE
Q 001386 962 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1041 (1088)
Q Consensus 962 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~ 1041 (1088)
+|+.+................ .+..|++++.+|.|.++|..+|+.+.++..... . -..+..+ . + +.
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~---~----~~~sp~~--~--~-~~ 363 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS---G----IASPPVV--V--G-DG 363 (377)
T ss_pred CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC---c----cccCCEE--E--C-CE
Confidence 998776532111122222222 466888999999999999999999987763221 0 0011112 2 2 45
Q ss_pred EEEEeCCCcEEEE
Q 001386 1042 FAVGLTNGEVYVI 1054 (1088)
Q Consensus 1042 l~~~~~dg~v~~w 1054 (1088)
|++++.||.|+.|
T Consensus 364 l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCceEEEe
Confidence 8889999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-08 Score=112.12 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=111.8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
.++.++.++.|..+|..+|+.+..+............ ++..++.++.+|.+..+|.++++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5777888999999999999998776544332222222 345788889999999999998888776554332111111
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccE-----EEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
. .+..++.+.. ++.++.||..+|+.+-.+.... ..+ ...... +..++.+..++.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555432 5669999999998877665433 111 111121 3467788889999999999998
Q ss_pred eeEEEeCCCCC--CCC---ceEEEec--CCCEEEEEeCCCcEEEEeCCCC
Q 001386 612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
.+......... ..+ ..+.-+| .+..+.+++.+|.+..+|..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 77654322110 000 0000011 2345666666677777766544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-09 Score=101.53 Aligned_cols=251 Identities=15% Similarity=0.099 Sum_probs=160.8
Q ss_pred CceeeeecC---CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC---CeEEEEECCCCC
Q 001386 336 SPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS 409 (1088)
Q Consensus 336 ~V~~v~~sp---dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~s~dg~ 409 (1088)
.+..+.|.. +|...++-+..+|.|.++...-........ . +..-.- .--++.|++-|.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~-----------~-----ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR-----------G-----LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec-----------c-----cchhhhhheeeeEEEeeccCc
Confidence 556666642 444456666777888888765433222100 0 111111 244788999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEE-eccCCcc
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 487 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~-~~~~~~~-~~~~~~~ 487 (1088)
.++++-.+|.+.+-+..... +.....++.|....+-+.|+....+ ++.+|+.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999998855554433 3333468899999999999987776 79999999999999998 4555544 5678889
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCC--EEEEEeeCCCCceeEEEEeCCCC
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
|.++.-++. .+.++++|+.|..|++||.++......-...++.|+.+..+|.-. .|+++-.++ ..+.+.+.+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999876543 667999999999999999997665555555568899999998543 444443222 344444332
Q ss_pred --ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEE-EEEcCCC
Q 001386 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 610 (1088)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~ 610 (1088)
+....+..+..|.+-...-.|......+++++ .|+.++ +|-..++
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 21122333332224444445533335567654 455544 6654443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-08 Score=120.00 Aligned_cols=255 Identities=11% Similarity=0.077 Sum_probs=161.2
Q ss_pred eEEEEecCCCEEEEE-e-CCcEEEEEcCCceeEEEecC--C------------CCCeEEEEEcCCCCcEEEEE-eCCCeE
Q 001386 802 PCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIG-MDDSTI 864 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~-~-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~d~~~lasg-~~dg~i 864 (1088)
..+++++++..++++ . ++.|+++|.. ++.+..+.+ . -.....+++++ ++..|+++ ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 568898865444444 3 6789999986 444443332 1 12357899998 55555444 456789
Q ss_pred EEEEcCCceeeeeecc--c---------------cCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001386 865 LIYNARSSEVISKLEG--H---------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 923 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~---~~ 923 (1088)
+++|+.++.. .++.+ . -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 33321 0 11246799999 56667777788999999998765321100 00
Q ss_pred cCCCCc---cCCCCeEEEEEcCCCCEEEE--EeCCeEEEEEcCcceeeeeee-----------cC---------CCcCEE
Q 001386 924 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWF-----------PI---------SSVPIS 978 (1088)
Q Consensus 924 ~~~~~~---~~~~~v~~~~fs~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~-----------~~---------h~~~v~ 978 (1088)
...+.. ........++|+|||+.|.+ ..++.|++||+.++....... .+ ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 01124568999999986655 456899999998765321100 00 012346
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc-cCCC--CccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 979 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 979 ~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
.+++++||..+++-+.++.|++||..++........... ...+ ....--.|..++++| +|+++++-+.+++|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 889999999888888999999999998876644321110 0000 001112467899999 789999999999999999
Q ss_pred CCCCC
Q 001386 1056 PNEPG 1060 (1088)
Q Consensus 1056 l~~~~ 1060 (1088)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96644
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.1e-08 Score=118.77 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=163.5
Q ss_pred EEEEEecC-CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE
Q 001386 738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 816 (1088)
Q Consensus 738 ~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1088)
..++++++ +..+++-..++.|.+++............. ......|. +. ...-.....+++++++..|+++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g--~~G~~dG~------~~-~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTG--EEGLRDGS------FE-DATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCC--CcCCCCCc------hh-ccccCCCcEEEEeCCCCEEEEE
Confidence 45788765 555566666788888886432110000000 00000000 00 0122346789999998877776
Q ss_pred e--CCcEEEEEcCCceeEEEecCC-----------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 817 S--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 817 ~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
+ ++.|+++|..++. +.++.+. -.....++|+|+++.++++.+.++.|++||..++... .
T Consensus 642 Dt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~ 719 (1057)
T PLN02919 642 DTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-V 719 (1057)
T ss_pred eCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-E
Confidence 5 5679999987754 3333210 1234679999966777777788899999999877543 2
Q ss_pred ecc---------c------cCCeeEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeee--------eeecC---CC--C
Q 001386 878 LEG---------H------SKRVTGLVFSDALNIL-VSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---DG--V 928 (1088)
Q Consensus 878 l~~---------h------~~~V~~l~~s~dg~~l-as~s~Dg~i~iwd~~~~~~~~~~--------~~~~~---~~--~ 928 (1088)
+.+ + -.....|+++|+|+.| ++.+.++.|++||+.++...... .+... .+ .
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 211 1 1235679999999854 45566789999999876522100 00000 00 0
Q ss_pred ccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecC------------CCcCEEEEEEeeCCCEEEEEeCC
Q 001386 929 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFVD 995 (1088)
Q Consensus 929 ~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~s~d 995 (1088)
.........++|+++|+.+++ ..++.|++||..++......-.+ +-.....+++++||+.+++-+.+
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 000113468999999998777 57789999999887765332111 22357889999999988888899
Q ss_pred CcEEEEEcCCCce
Q 001386 996 GTLSIHEASNLEV 1008 (1088)
Q Consensus 996 g~v~vwd~~~~~~ 1008 (1088)
+.|++||+.+++.
T Consensus 880 n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 SLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCcc
Confidence 9999999999875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-08 Score=109.47 Aligned_cols=207 Identities=14% Similarity=0.031 Sum_probs=130.8
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcc---cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
...+.+.... ......|||||+++++..+. +..|.++|+.+|+... +....+.+..
T Consensus 179 ~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~ 237 (419)
T PRK04043 179 TYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVV 237 (419)
T ss_pred CceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEe
Confidence 3344444443 77889999999864554333 3579999999887553 2234556677
Q ss_pred EEECCCCCEEEEEeC---CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCc
Q 001386 402 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 476 (1088)
Q Consensus 402 l~~s~dg~~las~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~ 476 (1088)
.+|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+ .|.+.|+.+|+
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGS 312 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCC
Confidence 889999998876532 34688889888753 2 2444443344568999999644433 2333 68888988887
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecC---------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
..+.... ... ...| +++|+.++..+.. ..|.+.|++++.... +... .......|+|||+.++..
T Consensus 313 ~~rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 313 VEQVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred eEeCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEE
Confidence 6433221 111 1245 5677777766543 257778887765433 3222 233358899999999888
Q ss_pred eeCCCCceeEEEEeCCCC
Q 001386 548 GTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~ 565 (1088)
... .+...+.+.++...
T Consensus 386 ~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 386 KYL-GNQSALGIIRLNYN 402 (419)
T ss_pred Ecc-CCcEEEEEEecCCC
Confidence 654 34556777777543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5e-08 Score=95.00 Aligned_cols=199 Identities=15% Similarity=0.113 Sum_probs=133.7
Q ss_pred eeEEEEecCCCEEEEEe-CCcEEEEEcCCce--eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC-Cceeee
Q 001386 801 VPCFALSKNDAYLFSAS-GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 876 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~-~~~~~~ 876 (1088)
..++.|++.+..++++. +|.+.+-+..... .++..+.|.-++....|+..+.+++.+|++|+.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45677888888888775 7888866555443 3447889999999999998778899999999999999999 344444
Q ss_pred e-eccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC--EEEEEeC
Q 001386 877 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHE 952 (1088)
Q Consensus 877 ~-l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~--~l~~~~d 952 (1088)
. .+-|...|.+|.-|| ++.++++|+.|..|++||...-. +++ ......+.|+.+..+|.-. .|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl----~~~~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPL----FKAKVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Ccc----ccCccccceEEEEecchhhhHHHHHHHh
Confidence 3 456889999999886 57899999999999999998521 111 1112225799999998643 4444444
Q ss_pred CeEEEEEcCcceee----eeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEE-EEEcCCCc
Q 001386 953 THLAIYEAEELTCL----KQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNLE 1007 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~----~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~-vwd~~~~~ 1007 (1088)
+..+|-+.+.+..- ......|.+-...-.|..-...|+|++ .|+.++ +|-..++.
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 44555555543221 112333444333334422235677765 566644 77655554
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=113.75 Aligned_cols=244 Identities=13% Similarity=0.186 Sum_probs=170.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCC-ccc---ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~-~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i 467 (1088)
+.||...|..++--.+.+-+++++.|.+|++|.++... .+. ...++..|..+|.++.|..+-+ .+++ .||.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~S--cD~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIAS--CDGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeee--ccCcc
Confidence 78999999999888888899999999999999997432 122 3457889999999999999987 5554 48999
Q ss_pred EEEeCCCCceeEEecc--CCccEEEEeeeeeCCceEEEEE-ecCCeEEEEECCCCCceEEec-----CCCCceEEEEEcc
Q 001386 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA 539 (1088)
Q Consensus 468 ~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~ 539 (1088)
.+||.--|+.+..+.. ..+.+..+...++-+...++.| +...+|+++|.+..+-...+. .++..+.++++.+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999988887754321 1222222222234345566655 778999999998876544433 3445688999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEE-EEcCCCeeeEEEeC
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 618 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~ 618 (1088)
.|++++++-. ++.|.+.|.++|+.+...+... .....++ .|..+.++....|.++.+ |..-+|......+.
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998765 5669999999999887766544 2333332 355567777778889988 99888776665543
Q ss_pred CCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
.... .--.-.-|.-++++.....+.+|.-
T Consensus 959 ppep----ahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPEP----AHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCcc----hhhhhccCceeEEeccCcEEEEEec
Confidence 2211 1111123556777776667777743
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.00 E-value=0.00018 Score=82.64 Aligned_cols=230 Identities=13% Similarity=0.156 Sum_probs=131.5
Q ss_pred CEEEEEeCCcEEEEEcCCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCC--------------CeEEEEEcCCcee
Q 001386 811 AYLFSASGGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARSSEV 874 (1088)
Q Consensus 811 ~~l~~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------------g~i~lwd~~~~~~ 874 (1088)
..++++..+.+++.-++.-+.+ +++. -......+++.+ ....+++.+.- ..++++|-.|-+.
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 4567777777777776643322 3322 223455666665 33444443321 1467777776655
Q ss_pred eeeecc--c--cCCeeEEEECCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 875 ISKLEG--H--SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 875 ~~~l~~--h--~~~V~~l~~s~d-g~~las~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
+...+- . .-.|.++.|..| +.++++|.. .|.|.++.+..........-...+| .+.++
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G------av~aL- 835 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG------AVYAL- 835 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc------ceeeh-
Confidence 443321 1 123555568777 677777642 3667777776622111111111111 12222
Q ss_pred EcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccC
Q 001386 940 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR 1019 (1088)
Q Consensus 940 fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 1019 (1088)
--=...++++-...|++|+..+++.++. ...|..++..+...-.|..+++|.-=+.+.+-.....+-.-...+..+.+
T Consensus 836 -~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p 913 (1096)
T KOG1897|consen 836 -VEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP 913 (1096)
T ss_pred -hhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc
Confidence 2223345556667899999998876665 55678889999999999999999887777665544443211222222222
Q ss_pred CCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1020 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1020 ~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
-|..++.+- |+..++.+..+|.+++-......
T Consensus 914 -------~Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 914 -------NWMTAVEIL--DDDTYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred -------cceeeEEEe--cCceEEeecccccEEEEEecCCC
Confidence 244556555 45778888889999888775443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-07 Score=91.40 Aligned_cols=206 Identities=18% Similarity=0.156 Sum_probs=141.1
Q ss_pred EEEecCCCEEEEEeCCcEEEEEcCCc--eeEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 804 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
++.+.||++||+..|..|.|-..++. ..+.+ .+.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67789999999999999888776542 12222 233344568899999 899999999999999999985433 333
Q ss_pred cc-c------cCCeeEEEECCC------CCEEEEEeCCCcEEEEEcCCCc---eeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 879 EG-H------SKRVTGLVFSDA------LNILVSSGGDAQIFVWDVDGWG---IQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 879 ~~-h------~~~V~~l~~s~d------g~~las~s~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
.. + ...|..+.|.+- ...|.....+|.++=|-+..+. -.....+....... ..|.++.++|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 22 2 346777777542 1246667778888888775421 11122222222222 3799999999
Q ss_pred CCCEEEEEe-----C-------CeEEEEEcCcceeeeee--------------------e--------cCCCcCEEEEEE
Q 001386 943 DQTRFLLVH-----E-------THLAIYEAEELTCLKQW--------------------F--------PISSVPISQATF 982 (1088)
Q Consensus 943 dg~~l~~~~-----d-------~~i~vwd~~~~~~~~~~--------------------~--------~~h~~~v~~l~f 982 (1088)
..++|++++ + -.+..|.+-++.+-... . ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 999988841 1 13677765544321110 0 112678899999
Q ss_pred eeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 983 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 983 s~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
||||+.||+...+|.|.+|++++..+...+..
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999999999888763
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.97 E-value=0.00023 Score=81.81 Aligned_cols=622 Identities=10% Similarity=0.055 Sum_probs=296.4
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC----
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d---- 407 (1088)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+-...... ....+. + ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhhh--c-ccccceeeEEEEeccccC
Confidence 334345666677777 5788888766566555543322100 000000 1 12357777766542
Q ss_pred CCEEEEEe---CCCEEEEEEccCCCcccceeEeccCCCCEEEEE--ecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 408 g~~las~~---~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
+..+++++ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-. +.-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEeccc
Confidence 34566654 578899876544322222223445 34566666 4443332 3333322 233444433221111122
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+.......+..+.- +++.|+=.. ...||+++-. .....+..+. .++....+.+...++.++. ...+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222222222211 222222221 2235555432 2222222333 3333344444445555442 223555555
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCC------CEEEEEeCCCcEEEE-EcCCCeeeEEEeCCCC--CCCCceEEEecC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGGG--LPENPRICFNKN 633 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~~--~~~v~~v~~s~~ 633 (1088)
..+......... -...|.|+.++|-| ++++.|..+..+.+. -..+...+........ ...|.-.+|-.|
T Consensus 517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 544422222211 23678999998742 256677665554443 3334443333322211 112334455557
Q ss_pred CCEEEEEeCCCcEEEEe--CCCCCccccc--ccccCcceeeeecCC---------CcceeccccCCceeecCCC------
Q 001386 634 GTLLAVIANENRIKILE--TPESNSVDAA--GVLSDNLRKLSVNPI---------STVTGAGIANGSVSVNEDP------ 694 (1088)
Q Consensus 634 ~~~l~~~~~dg~i~iwd--~~~~~~~~~~--~~~~~~v~~~~~~p~---------~~~~~~~~~~~~~~~~~~~------ 694 (1088)
..+|.++..||.+.-+. ..++..-... .....++.--.|+.. ......-...+...+....
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~ 674 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNH 674 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhh
Confidence 88999999999987654 4444222211 111112211112111 1111222222222222111
Q ss_pred -----CCC-CCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCC
Q 001386 695 -----KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1088)
Q Consensus 695 -----~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 768 (1088)
++. +..++++ ..+.+++..++.-.....+.+. -......+++.+....+.+.+.-.....=.. .
T Consensus 675 ~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvp-----l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~----~ 744 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVP-----LGESPRRICYQESSLTFGVLSNRIESSAEYY----G 744 (1096)
T ss_pred hcccccccCCceEEEe-cCCceEEEEecchhhcceeeec-----CCCChhheEecccceEEEEEecccccchhhc----C
Confidence 111 1122222 2244555544433333333322 1233455666664443333332211110000 0
Q ss_pred CCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC-CCEEEEEe-----C------CcEEEEEcCCceeEEEec
Q 001386 769 TLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----G------GVISLYIVMTFKTILTIM 836 (1088)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~-----d------g~i~iwd~~~~~~~~~~~ 836 (1088)
.......++++|..+-..+...++........+.+..|..| +.++++|. | |.|.+|....++.+....
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~ 824 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA 824 (1096)
T ss_pred CcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee
Confidence 00011123445555444333333322222233444557777 77888774 1 779999888754444443
Q ss_pred CC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 837 PP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 837 ~~--~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.+ .+.+.++..- +|++||. -...|++|++.+.+.++.-..|..++..+...-.|..++.|.--+.+.+-.....
T Consensus 825 e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 825 ETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred eeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 33 2445554433 5777764 4668999999998777777778999999999999999999988887777665543
Q ss_pred ceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcc------ee----eeeeec-------CCCcCE
Q 001386 915 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL------TC----LKQWFP-------ISSVPI 977 (1088)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~------~~----~~~~~~-------~h~~~v 977 (1088)
+ .......+...+ .+++.+.+-.+..++.+-.++.+.+....+. +. ...+.. .|..-|
T Consensus 901 e---g~f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv 975 (1096)
T KOG1897|consen 901 E---GNFEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLV 975 (1096)
T ss_pred C---CceEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceE
Confidence 3 112222222211 4688888888888888877777666644321 00 111111 133333
Q ss_pred EEE--EEeeCCCEEEEEeCCCcEEEE
Q 001386 978 SQA--TFSCDCRMVFTSFVDGTLSIH 1001 (1088)
Q Consensus 978 ~~l--~fs~dg~~l~s~s~dg~v~vw 1001 (1088)
.++ .-+|-+..+..|+.+|.|-+-
T Consensus 976 ~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 976 MQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred eeccccccCCCCcEEEEEccceEEEE
Confidence 331 223444557778889988654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-09 Score=109.60 Aligned_cols=296 Identities=10% Similarity=0.117 Sum_probs=186.3
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC-cceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.-.+..+.||+..|.+++--.+.. -+++++.|.+|++|.+... ..+.+ +.|..+ +..|..+|..+
T Consensus 725 ~irL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~i 790 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDI 790 (1034)
T ss_pred eeeeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCcccce
Confidence 344566789999999987666555 3789999999999999753 22222 234444 44599999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
.|-.|-++++++ ||.|++||.--|..+.+...-..| +.+..+...++ .+.++++.++...+|+++|.+.++-...+
T Consensus 791 gfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~ 867 (1034)
T KOG4190|consen 791 GFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL 867 (1034)
T ss_pred eeeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeE
Confidence 999999999875 778999998877765533222222 33333433343 34435555588899999999988877666
Q ss_pred c-----cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 482 E-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 482 ~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
+ +..+.+.++++.+ .|+.++.+-..|.|.+.|.+++..+............++ .|..+.|+.... +..
T Consensus 868 kVcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHs 940 (1034)
T KOG4190|consen 868 KVCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHS 940 (1034)
T ss_pred EeccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cce
Confidence 4 3345677888744 567899999999999999998876665544333322222 244445554432 333
Q ss_pred EEE-EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC----CeeeEEEeCCCCCCCCceEEEe
Q 001386 557 LVE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 557 i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+.+ |....|......+... .+..- ...-|..++++.....+.+|.-.. ...+..+....-....++++.-
T Consensus 941 laVnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~L 1015 (1034)
T KOG4190|consen 941 LAVNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPL 1015 (1034)
T ss_pred eEeeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeec
Confidence 555 7766665544443322 11111 112355677766666677774221 1222233333222335677777
Q ss_pred cCCCEEEEEeCCCcEEE
Q 001386 632 KNGTLLAVIANENRIKI 648 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~i 648 (1088)
|-..-+..|...|.|.+
T Consensus 1016 PLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1016 PLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cccchhhccCCCCceee
Confidence 76666777888888765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=112.87 Aligned_cols=211 Identities=17% Similarity=0.276 Sum_probs=149.1
Q ss_pred eeeecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcE
Q 001386 389 TALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1088)
Q Consensus 389 ~~~~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i 467 (1088)
..++.||+..|+.+.|.| .-..||+++.|..+..||+.+.. +.+.....-...-..++|+.... .+.+.+..+.|
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i 182 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDI 182 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCce
Confidence 345889999999999999 45788999999999999998865 33334445555677899987766 35556667789
Q ss_pred EEEeCCCC-ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-cCCCCceEEEEEccCCCEEE
Q 001386 468 KVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 468 ~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~ 545 (1088)
.+||.+.| .++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+........ .....++..-++.|-|.-.+
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 99999876 56789999999999998854433 36888999999999999865543322 23344666677777665443
Q ss_pred EEeeCCCCceeEEE---------EeCCC-CceeEEEeccccccccEEEEEEeCC----------CCEEEEEeCCCcEEEE
Q 001386 546 SCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIW 605 (1088)
Q Consensus 546 ~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iw 605 (1088)
.--.. |...+.+ |+..+ .+.++++.||. +.|....|-.. .-.|++-+.|..+++|
T Consensus 262 ~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 262 IMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ecccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 32221 1223333 44333 35788999988 66655444322 2368999999999999
Q ss_pred EcCC
Q 001386 606 DMNK 609 (1088)
Q Consensus 606 d~~~ 609 (1088)
-+.+
T Consensus 337 pI~~ 340 (1081)
T KOG0309|consen 337 PIDS 340 (1081)
T ss_pred eccH
Confidence 8764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-07 Score=102.23 Aligned_cols=485 Identities=15% Similarity=0.127 Sum_probs=256.5
Q ss_pred CCeEEEEECCCCCEEEEEe----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 397 VSVNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
+.-+-..|+|...++|+++ ..|+|.||- ++|+.-+.. +..- .+++++|+|..- +|+.|-.-|.+.+|..
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEec
Confidence 3344467999999999886 457788874 455533321 2222 356799999876 7888888999999997
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CC--CC--ceEEEEEccCCCEEE-
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--AP--GL--GCTRMAYSANGRRLF- 545 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~--~~--~v~~~~~s~~g~~l~- 545 (1088)
.+.+.-.....|..+|..+.| +++|..++++..-|.|.+|..+-........ .| +. ...+...++++.-++
T Consensus 89 ~~~e~htv~~th~a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~ 166 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDW--SHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFK 166 (1416)
T ss_pred CCceeeeeccCCCCCceeEEe--cCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhh
Confidence 777666666779999999999 5577899999999999999877443322211 11 11 234555566643221
Q ss_pred ----EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 546 ----SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 546 ----~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
+.+.+..+-....-|..++.. +... =.-.|+|..++.++.+|+|+--|- .|+..........
T Consensus 167 laKaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~ 232 (1416)
T KOG3617|consen 167 LAKAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE 232 (1416)
T ss_pred hhhhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch
Confidence 111111111112222211111 0000 013478888999999999888774 4555555554322
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCC-CCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCc
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1088)
..+-|.+-..-+++...+-.+.++-+. +|.... +..+.++-. .| ...|.
T Consensus 233 ----vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee--------~~~vk~sgk-----~G------------grqGg- 282 (1416)
T KOG3617|consen 233 ----VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEE--------RCAVKVSGK-----LG------------GRQGG- 282 (1416)
T ss_pred ----HHHHHhcccceEEEEeeeceeeEEEecCCCchHH--------hhhhhhccc-----cC------------CccCc-
Confidence 234455544444444444444443322 221111 000011000 00 00111
Q ss_pred ccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccC
Q 001386 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQ 780 (1088)
Q Consensus 701 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 780 (1088)
++.+...|.++- ...+. ......+.+++++..+..+.++...|.+.+|.-...... ....+..|.
T Consensus 283 iA~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~--g~p~~d~w~ 347 (1416)
T KOG3617|consen 283 IACSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQ--GDPTIDVWT 347 (1416)
T ss_pred cccccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCcccc--CCCCcceEE
Confidence 233322221110 00000 124567899999999999999999999999963322111 111223333
Q ss_pred CCCCCcceeeccCCCCCCCCeeEEEEecC---------------------------------------------------
Q 001386 781 PRHGPQFMVNDTTDSNSQEAVPCFALSKN--------------------------------------------------- 809 (1088)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--------------------------------------------------- 809 (1088)
+.+.. ...+.|+.+.|.|-
T Consensus 348 l~~~~----------e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~l~~~h~~~~~A~q~ss~S~~L~hc~sGv~~~l 417 (1416)
T KOG3617|consen 348 LNGKR----------ESLGKISLIRWGPIKSTAAVNTEEDVVLLGENSLTVKHRGKMAAIQTSSNSFTLLHCTSGVSQDL 417 (1416)
T ss_pred ecCch----------hhccceEEEEeccccchhhhhhhhheeeeccCchHHHHhhhhHHhhhcCCceEEEeeccchhhhh
Confidence 32221 01112222222221
Q ss_pred ------------CCEEEEEeCCcEEEEEcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 810 ------------DAYLFSASGGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 810 ------------g~~l~~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
...+++..+.+|..|++.+...... ........+++++. +.++...++++ |.++.+. |...
T Consensus 418 ~~~~~~~gi~l~e~~lvvwNgr~v~~y~lq~SG~la~~~~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~ 492 (1416)
T KOG3617|consen 418 KLSIPSAGICLGEKQLVVWNGRTVVTYDLQTSGSLATIQCTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVR 492 (1416)
T ss_pred hhccchhhheeccceEEEEcCceEEEEEecccchhHHHhhhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhh
Confidence 1123333344455555532111110 11111223344444 34455555544 4444443 3333
Q ss_pred ee--eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE---E
Q 001386 876 SK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---V 950 (1088)
Q Consensus 876 ~~--l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~---~ 950 (1088)
+. +..-.+.|.-+.++ |.+++.....+.++-+|+...+...........+.....+.+..+..+..|..+.+ +
T Consensus 493 q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~ 570 (1416)
T KOG3617|consen 493 QEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAA 570 (1416)
T ss_pred hhccchhccCceehhhhc--cceeEEeehHHHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhh
Confidence 32 23344555555554 78898888888888888887665544444444444444456788888887776654 2
Q ss_pred eC----CeEEEEEcCcceee
Q 001386 951 HE----THLAIYEAEELTCL 966 (1088)
Q Consensus 951 ~d----~~i~vwd~~~~~~~ 966 (1088)
.+ .++..||..+++..
T Consensus 571 ~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 571 RKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred ccCCCcceeEeeccchhhHH
Confidence 22 47999999987654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.2e-09 Score=123.91 Aligned_cols=201 Identities=16% Similarity=0.259 Sum_probs=155.6
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
+..|-..|.++.=+|... +.++|+.||.|++|.+..++.+.... -.|. ..|+.+.|+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~r-----------------t~g~-s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFR-----------------TAGN-SRVTRSRFNHQGN 2264 (2439)
T ss_pred eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEee-----------------ccCc-chhhhhhhcccCC
Confidence 334556788888899888 57899999999999999998775421 2233 8899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe---CCCcEEEEeCCC-C--ceeEEecc
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVT-G--SRTYSFEG 483 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s---~d~~i~vwd~~~-~--~~~~~~~~ 483 (1088)
.+..+..||.+.+|.+.. +.....+.|......+.|-. . .+++++ .++.+.+||.-- + .+++ ..
T Consensus 2265 k~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~ 2334 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC 2334 (2439)
T ss_pred ceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--ee
Confidence 999999999999999983 44446778999999999986 3 456654 467899999542 2 2333 77
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|.+.++++++.| ..++|++|+.+|.|++||++..+.+..+.. +. ...++++++. ++.+.||++.
T Consensus 2335 H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred cCCCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcc
Confidence 999999999966 457999999999999999988776665543 33 4456666654 6669999999
Q ss_pred CCceeEEEeccc
Q 001386 564 EGAIKRTYQGLQ 575 (1088)
Q Consensus 564 ~~~~~~~~~~~~ 575 (1088)
....++.+....
T Consensus 2399 ~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEH 2410 (2439)
T ss_pred ccchhhcCchhh
Confidence 888877776533
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-07 Score=99.57 Aligned_cols=211 Identities=9% Similarity=0.013 Sum_probs=130.1
Q ss_pred cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEeCC---CeEEEEEcCCceeeeeeccccCCeeEEEECCCCC
Q 001386 820 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 895 (1088)
Q Consensus 820 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~d---g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 895 (1088)
.|.+-|..... .+.+.... ......||| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 35555554333 33333333 778899999 676 36654433 479999999886543333 445566788999998
Q ss_pred EEEEE-eCC--CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCC----eEEEEEcCcceeeee
Q 001386 896 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 968 (1088)
Q Consensus 896 ~las~-s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~----~i~vwd~~~~~~~~~ 968 (1088)
.|+.. +.+ ..|.++|+.+++.. .+....+. .....|+|||+.|+..++. .|++.|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~~------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPGI------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCCc------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77644 333 46777888776522 22222221 2345799999999885443 699999988877544
Q ss_pred eecCCCcCEEEEEEeeCCCEEEEEeCC---------CcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCC
Q 001386 969 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1039 (1088)
Q Consensus 969 ~~~~h~~~v~~l~fs~dg~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~ 1039 (1088)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... . . ....+|+| ||
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33222 124899999998877654 26788899888753 22211 0 0 11267999 78
Q ss_pred CEEEEEeCC-CcEEEEeCCCCC
Q 001386 1040 TQFAVGLTN-GEVYVIEPNEPG 1060 (1088)
Q Consensus 1040 ~~l~~~~~d-g~v~~w~l~~~~ 1060 (1088)
..++....+ +.-.++-+...+
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCC
Confidence 877666544 343444444333
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-06 Score=96.99 Aligned_cols=218 Identities=10% Similarity=0.058 Sum_probs=127.4
Q ss_pred CCEEEEEeCCcEEEEEcCCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC-
Q 001386 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK- 883 (1088)
Q Consensus 810 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~- 883 (1088)
+..++...++.+..+|.++|+.+.......... .+.... ++ .++.++.+|.+..+|..+|+.+........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 333333346777777887777776665321110 111222 23 466678899999999999987655431100
Q ss_pred ------CeeEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeE
Q 001386 884 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 955 (1088)
Q Consensus 884 ------~V~~l~~s~--dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i 955 (1088)
....+.-+| .+..++.++.+|.+...|..+++..-.. ..+. ...+.. .+++.++.+.++.+
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~----~~~~------~~~~~~-~~~~vy~~~~~g~l 306 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR----EYGS------VNDFAV-DGGRIYLVDQNDRV 306 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee----cCCC------ccCcEE-ECCEEEEEcCCCeE
Confidence 011111222 3456777788999999999987633211 1111 111222 24455555788999
Q ss_pred EEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccc-eEEEE
Q 001386 956 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP-HAIAA 1034 (1088)
Q Consensus 956 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1034 (1088)
..+|..+|+.+............+... .+.+|+.++.||.+.+.|..+|+.+.+..... . .+.. ..+
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~---~-----~~~s~P~~-- 374 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS---S-----GFLSEPVV-- 374 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC---C-----cceeCCEE--
Confidence 999999998765422111111222222 24567788999999999999999988765311 0 0111 112
Q ss_pred CCCCCCEEEEEeCCCcEEEEeC
Q 001386 1035 HPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1035 ~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
. +..|++++.||.|+.+++
T Consensus 375 ~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 A---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred E---CCEEEEEeCCceEEEEeC
Confidence 1 357888999999999876
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=121.77 Aligned_cols=201 Identities=15% Similarity=0.256 Sum_probs=160.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
...|-..|.++.=+|...+.++|+.||.|++|....+..+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3345678889999998999999999999999999998877655443 33 8899999999999 677888899999998
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe---cCCeEEEEECCCCC-ceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
+. .+.....+.|......+.|.. ..+++++ .++.+.+||.-... .-.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666667788888888887754 2455553 46789999865433 233447888899999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
+. +|.|++||++..++.+.++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 87 44499999998887766553 33 467899999999999999998888877764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-06 Score=84.31 Aligned_cols=216 Identities=16% Similarity=0.139 Sum_probs=135.8
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCc--eeeee---eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001386 845 LAFNPHDNNVIAIGMDDSTILIYNARSS--EVISK---LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 845 l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~~~~---l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~ 919 (1088)
++.++ +|++||+- .|..|.|=..++. ..+.+ .+...-.-+.++||||+.+||.+...|+|+++|+...+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 56666 88888865 5777877665542 22222 233334567899999999999999999999999997543322
Q ss_pred eeeecCCCCccCCCCeEEEEEcCCC-------CEEEEEeCCeEEEEEcCcce-------eeeeeecCCCcCEEEEEEeeC
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKDQ-------TRFLLVHETHLAIYEAEELT-------CLKQWFPISSVPISQATFSCD 985 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~dg-------~~l~~~~d~~i~vwd~~~~~-------~~~~~~~~h~~~v~~l~fs~d 985 (1088)
.......+ .....|..+.|-+-- .+|++..+|.++-|-+..+. ....+...+...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 22111111 112457777775532 45666888887777654321 112233334789999999999
Q ss_pred CCEEEEEeCC-----------CcEEEEEcCCCceEEEeccccccCCC-----------C--------ccccccceEEEEC
Q 001386 986 CRMVFTSFVD-----------GTLSIHEASNLEVQCRILSTAYLRPT-----------T--------SCLHVYPHAIAAH 1035 (1088)
Q Consensus 986 g~~l~s~s~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~~-----------~--------~~~~~~~~~~~~~ 1035 (1088)
-+.|++|+.. .-+..|.+-++..-+.........-. . .........|+.+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 8888777632 14677887776554332211000000 0 0111223557789
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCC--CCCCccc
Q 001386 1036 PLKPTQFAVGLTNGEVYVIEPNE--PGDTWAV 1065 (1088)
Q Consensus 1036 p~d~~~l~~~~~dg~v~~w~l~~--~~~~~~~ 1065 (1088)
| ||..||+...+|.|.+|+++. ...+|..
T Consensus 239 P-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 239 P-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred C-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 9 899999999999999999976 4456653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.9e-06 Score=83.50 Aligned_cols=205 Identities=15% Similarity=0.132 Sum_probs=140.4
Q ss_pred eEEEEec-CCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCe--EEEEEcCCCCcEEEEEe-----CCCeEEEEEcC-
Q 001386 802 PCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGM-----DDSTILIYNAR- 870 (1088)
Q Consensus 802 ~~~~~s~-dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~sp~d~~~lasg~-----~dg~i~lwd~~- 870 (1088)
-.++.+| ++..++.+. .....+||..+++....+....+.- -.-+||+ ||++|++.- ..|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3578888 566666676 3458999999999988877655433 3578999 888888753 35799999999
Q ss_pred CceeeeeeccccCCeeEEEECCCCCEEEEEeC-------CC-----------cEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 871 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DA-----------QIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 871 ~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~-------Dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
+.+.+.++..|.-.-..+.+.|||+.|+.+-. .| .+..-|..+|+......+.. .-+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~--- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ--- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc---
Confidence 67888899888777778999999988877521 11 24444555555333222211 1122
Q ss_pred CCeEEEEEcCCCCEEEEEe-CC-------eEEEEEcCcceeeeeeec------CCCcCEEEEEEeeCCCEEEEEe-CCCc
Q 001386 933 PSETHIQFHKDQTRFLLVH-ET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 997 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~~~-d~-------~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~s~s-~dg~ 997 (1088)
.+|.++++.++|..++... .+ -|.+++-.. .+..+.. .-...+-+|+++.+|.++++.| .-+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 2699999999999887741 11 244444332 2222111 1157899999999999876555 6789
Q ss_pred EEEEEcCCCceEEEec
Q 001386 998 LSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 998 v~vwd~~~~~~~~~~~ 1013 (1088)
+.+||..+|.++....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999987665
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-08 Score=99.58 Aligned_cols=164 Identities=20% Similarity=0.157 Sum_probs=114.2
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~- 414 (1088)
.++.+.++|+|+ ++|++..+....+.++..... ..+.++. ..-...-+++.|..+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~------------~~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDV------------SCVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeE------------eecccCcceeeeeeccceEEEEe
Confidence 456667788887 788888888877777655433 0111111 0011223344454455555444
Q ss_pred --eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccCCccEEEE
Q 001386 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1088)
Q Consensus 415 --~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~ 491 (1088)
+....+.+|....+.+. .+-||-..++.++|+||++ +++++..|..|+|-....--.+..| -||..-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44455666766654433 3569999999999999999 8999999999999877766666555 5799999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
++. ++..|++++.|++|++||+.+++....+
T Consensus 201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eec---cCceeeecCCCCcEEEEecccCCccccc
Confidence 874 3357999999999999999988876544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.9e-06 Score=84.42 Aligned_cols=233 Identities=16% Similarity=0.163 Sum_probs=153.6
Q ss_pred ceeeeecCCCCeEEEEEcccCc-EEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
...++.+|+....++.+-.-|+ ..+||..+|+...... .-....|.|| -+||+||++|.+.-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEec
Confidence 3457889966667888877664 7899999998775421 0111225555 48999999999873
Q ss_pred -----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe----------------CCCcEEEEeCCC
Q 001386 416 -----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVT 474 (1088)
Q Consensus 416 -----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s----------------~d~~i~vwd~~~ 474 (1088)
..|.|-|||...+ ++.+.++..|.-.-..+.+.|||+.|+++-|+ .+-++...|..+
T Consensus 70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 4578999999932 45555777787777889999999854444443 133456677888
Q ss_pred CceeEE--e--ccCCccEEEEeeeeeCCceEEEEEecCCe-------EEEEECCCCCceEEec-------CCCCceEEEE
Q 001386 475 GSRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMA 536 (1088)
Q Consensus 475 ~~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~-------~~~~~v~~~~ 536 (1088)
|+.+.. + ..|...|..+++. .+|..++..-..|. |-+++.. +....+. .-.+-+-+++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~--~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVD--GDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CceeeeeecCccccccceeeEEec--CCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEE
Confidence 888765 4 3477788888884 45544444433332 3333322 2222221 1234688999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcE
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1088)
+++++..+++.+. ..+.+.+||..+++.+....-.. +..++-.+++ ++..+..|.+
T Consensus 224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~D-----~cGva~~~~~--f~~ssG~G~~ 279 (305)
T PF07433_consen 224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLPD-----ACGVAPTDDG--FLVSSGQGQL 279 (305)
T ss_pred EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccCc-----eeeeeecCCc--eEEeCCCccE
Confidence 9999999988763 35679999999999987776533 6667766665 4444444543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-06 Score=89.85 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=139.8
Q ss_pred CCcEEEEEcCCceeEEEecCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCC
Q 001386 818 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 895 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 895 (1088)
+|+|..||..+|+.+...... .....+..+. ++..+++++.++.++.||..+|+.+..+.. .+++.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998887531 1222222332 345677778999999999999999877764 22222211 22455
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCC
Q 001386 896 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 974 (1088)
Q Consensus 896 ~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~ 974 (1088)
.++.++.|+.++.+|..+|+..-.......+... .........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6676778889999999988754321111111110 12223333337766665 589999999999999877644221
Q ss_pred c---------CEEEEEEeeCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001386 975 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1044 (1088)
Q Consensus 975 ~---------~v~~l~fs~dg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~ 1044 (1088)
. .+..-....++ .++.++.++. +.+ |+.+|+.+.+.. ... ... ...+ ++..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~---~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYS---LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECE---CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccC---Ccee-eCCEEEE
Confidence 1 11222223345 7777777885 555 999999664222 111 111 1233 4677888
Q ss_pred EeCCCcEEEEeCCCCCCCcc
Q 001386 1045 GLTNGEVYVIEPNEPGDTWA 1064 (1088)
Q Consensus 1045 ~~~dg~v~~w~l~~~~~~~~ 1064 (1088)
++.+|.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999999988885
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.2e-08 Score=98.08 Aligned_cols=159 Identities=9% Similarity=0.091 Sum_probs=113.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCce----eeeeeccccCCeeEEEECCCCCEEEE---EeCCCcEEEEEcCCCc
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~las---~s~Dg~i~iwd~~~~~ 915 (1088)
..+..++ ++++||++..+....++++.... ++...... ..-+++.|-.+...... +++...+.+|....+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445666 78899998888887777775433 22222222 22344444444444333 3455566666665422
Q ss_pred eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
....-||.. .++.++||||+++|+++ .|..|+|-....--.+..+.-||..-|..++.-++ ..|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence 222345554 68999999999999996 78999999999888888888999999999998764 56999999
Q ss_pred CCcEEEEEcCCCceEEEec
Q 001386 995 DGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 995 dg~v~vwd~~~~~~~~~~~ 1013 (1088)
|++|++||+.+|+++..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999986655
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-05 Score=83.15 Aligned_cols=221 Identities=14% Similarity=0.155 Sum_probs=142.7
Q ss_pred EEEEec-CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe-cCCCEEEEE
Q 001386 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSA 816 (1088)
Q Consensus 739 ~~~~s~-~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~ 816 (1088)
+++|.+ ++..+++-...+.|..|+...... ..... .....+++. +++ .++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-------------------~~~~~------~~~~G~~~~~~~g-~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-------------------EVIDL------PGPNGMAFDRPDG-RLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-------------------EEEES------SSEEEEEEECTTS-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-------------------EEEec------CCCceEEEEccCC-EEEEE
Confidence 567887 566566655678787777543321 11111 126778888 565 55555
Q ss_pred eCCcEEEEEcCCceeEEEecC-----CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEEcCCceeeeeeccccC
Q 001386 817 SGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 817 ~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d~~~lasg~~d--------g~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
..+.+.++|..+++....... .......+++.| +|++.++.... |.|+.++.. ++...... .-.
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 656667779998865444332 335678999999 78877776544 568888877 55433333 345
Q ss_pred CeeEEEECCCCCEEE-EEeCCCcEEEEEcCCCc--eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEE
Q 001386 884 RVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYE 959 (1088)
Q Consensus 884 ~V~~l~~s~dg~~la-s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd 959 (1088)
..+.|+|+||++.|. +-+..+.|..++++... ......+....... +..-.+++..+|++.++. ..+.|.+++
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 578999999999776 55677888899986432 22223332222221 136789999999988884 678999999
Q ss_pred cCcceeeeeeecCCCcCEEEEEEe-eCCCEEEEEe
Q 001386 960 AEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 993 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~s 993 (1088)
.. |+.+..+... ...+++++|. +|.+.|+..+
T Consensus 212 p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 88 8888776655 4589999995 6767766544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.8e-09 Score=114.40 Aligned_cols=216 Identities=15% Similarity=0.228 Sum_probs=157.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC-cEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-TIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~-~i~vw 470 (1088)
+..|....+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 77799999999999999999999999999999999997665 57799999999999999995 333333333 56789
Q ss_pred eCC-CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC----CCceEEEEEccCCCEEE
Q 001386 471 DAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 471 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~ 545 (1088)
++. ++...++|.+- .++.|+.. ...-+.|+.-....+||+++.....++... ...-.+..|+|+.++++
T Consensus 1173 ~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 976 45666666532 34455322 233445555567889999988765542221 11236788999998887
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
-- =.+||++..+.++.|.... ..+ .-.|+|.|..++.-++ |||+++.+++...+.-. -
T Consensus 1247 nd---------GvLWDvR~~~aIh~FD~ft---~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----q 1304 (1516)
T KOG1832|consen 1247 ND---------GVLWDVRIPEAIHRFDQFT---DYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----Q 1304 (1516)
T ss_pred eC---------ceeeeeccHHHHhhhhhhe---ecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc----c
Confidence 53 2589999888887776554 222 2359999999998765 99999999888776433 2
Q ss_pred ceEEEecCCCEEEE
Q 001386 626 PRICFNKNGTLLAV 639 (1088)
Q Consensus 626 ~~v~~s~~~~~l~~ 639 (1088)
..+.|+..|..+..
T Consensus 1305 c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYA 1318 (1516)
T ss_pred eEEEeccCccchhh
Confidence 56888888866543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-05 Score=80.68 Aligned_cols=216 Identities=13% Similarity=0.136 Sum_probs=137.6
Q ss_pred eEEEEec-CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEc-CCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 802 PCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 802 ~~~~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
.+++|.+ ++.++++.. .+.|..|+..+++... +.... ...+++. + ++.+++ +... .+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EETT-CEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEcC-ceEEEecCCCcEEEEe
Confidence 3678888 555555554 7889999998876543 22222 7778888 5 665555 4444 4566699988654333
Q ss_pred cc-----ccCCeeEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC
Q 001386 879 EG-----HSKRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 945 (1088)
Q Consensus 879 ~~-----h~~~V~~l~~s~dg~~las~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~ 945 (1088)
.. .....+.+++.|+|++.++.... |.|..++.. ++.. ....... ....++|+||++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~--~~~~~~~-------~pNGi~~s~dg~ 146 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT--VVADGLG-------FPNGIAFSPDGK 146 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE--EEEEEES-------SEEEEEEETTSS
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE--EEecCcc-------cccceEECCcch
Confidence 22 34568899999999988877654 446666665 3311 1222211 357899999999
Q ss_pred EEEEE--eCCeEEEEEcCccee----eeeeecCC--CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc
Q 001386 946 RFLLV--HETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1017 (1088)
Q Consensus 946 ~l~~~--~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 1017 (1088)
.|.++ ..+.|..+++..... ...+.... .+....+++..+|...++....+.|.+++-. |+++..+....
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~- 224 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV- 224 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence 88764 567888888863221 12222112 2347889999999988888889999999987 99888776221
Q ss_pred cCCCCccccccceEEEEC-CCCCCEEEEE
Q 001386 1018 LRPTTSCLHVYPHAIAAH-PLKPTQFAVG 1045 (1088)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~-p~d~~~l~~~ 1045 (1088)
-.+.+++|. | +.+.|++.
T Consensus 225 ---------~~~t~~~fgg~-~~~~L~vT 243 (246)
T PF08450_consen 225 ---------PRPTNCAFGGP-DGKTLYVT 243 (246)
T ss_dssp ---------SSEEEEEEEST-TSSEEEEE
T ss_pred ---------CCEEEEEEECC-CCCEEEEE
Confidence 146778994 5 54555444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-07 Score=92.19 Aligned_cols=299 Identities=13% Similarity=0.131 Sum_probs=193.3
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
|...|+.+..+ ..+++++++-||.++.|.-..- +|..+.. ....|...+.+++.+.+|.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i----------------sGvEfVK---hFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI----------------SGVEFVK---HFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc----------------cceeehh---hhHHHHHHHHhhhcccccee
Confidence 56666665544 4567899999999999963210 1111111 11136778889999999999
Q ss_pred EEEEe--CCcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCC--cEEEEEeCCCeEEEEEcCCce-eeeee-ccccCCe
Q 001386 813 LFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN--NVIAIGMDDSTILIYNARSSE-VISKL-EGHSKRV 885 (1088)
Q Consensus 813 l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~--~~lasg~~dg~i~lwd~~~~~-~~~~l-~~h~~~V 885 (1088)
+.+.. |..++++|+++...+..++... ....++..++.|. .+.++...+|.+.|+|-.... ....+ .-|..+|
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV 147 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV 147 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce
Confidence 99865 6889999998876664443222 1222333444111 233344567899999976543 33333 4499999
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeeeee---eec---CCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEE
Q 001386 886 TGLVFSDALNILVSSGGDAQIFVWDVDGWG-IQTCRS---LQT---PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 957 (1088)
Q Consensus 886 ~~l~~s~dg~~las~s~Dg~i~iwd~~~~~-~~~~~~---~~~---~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~v 957 (1088)
.++.+++-+..++|....|.|.-|.....- ...... ++. +-+.........++.|+|+|..+.+ +.|.+|++
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 999999999999999999999999988410 000000 000 0011111135789999999999999 78899999
Q ss_pred EEcCcceeeeeeecC-------------------------------C-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 958 YEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 958 wd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
++..+|+.++.+-.. | ...-+.++|...|.+|+.|+-=| |+|.++.+
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 999999877653111 2 23445678888999999887665 89999999
Q ss_pred CceEEEecccccc----------------CCCCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001386 1006 LEVQCRILSTAYL----------------RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 1006 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
+.+.+.+...... +.........+ .+.+.+ |+.+++++-.-..++++
T Consensus 307 n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 307 NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence 9887654311100 00000000111 234677 78999999999999998
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-05 Score=88.95 Aligned_cols=309 Identities=10% Similarity=0.089 Sum_probs=170.5
Q ss_pred EEEEEecCCeEEEEECCCCCceEEecCCCC-ce-E-----EEE--EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGL-GC-T-----RMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v-~-----~~~--~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
.++.++.+|.+.-+|.++++.......... .. . .+. ..-++..++.++. ++.++.+|..+|+.+-..
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE----KGQVYALNAEDGEVAWQT 146 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----CCEEEEEECCCCCCcccc
Confidence 566667777777788777776665443321 00 0 000 0113445555543 556999999999987766
Q ss_pred eccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCC---CceEEEecCCCEEEEEeCCCcEEE
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE---NPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
.... ........ .+..++.++.++.+.-+|..+|+.+........... ..+-.. .+..++.++.+|.+..
T Consensus 147 ~~~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 147 KVAG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSA 219 (394)
T ss_pred cCCC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEE
Confidence 5432 11111112 245677788899999999999999988765321100 011111 1335677778889988
Q ss_pred EeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec
Q 001386 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1088)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 728 (1088)
+|..+++......... +.+.. ..-++++.
T Consensus 220 ~d~~~G~~~W~~~~~~-------------------------------~~~~~-------~~~~~~~~------------- 248 (394)
T PRK11138 220 VLMEQGQLIWQQRISQ-------------------------------PTGAT-------EIDRLVDV------------- 248 (394)
T ss_pred EEccCChhhheecccc-------------------------------CCCcc-------chhccccc-------------
Confidence 8888776543221100 00000 00000000
Q ss_pred CCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec
Q 001386 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 808 (1088)
Q Consensus 729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1088)
...+ .+ .+..++.++.+|.+..+|...++. +|....+. ...+.. .
T Consensus 249 ----~~sP----~v--~~~~vy~~~~~g~l~ald~~tG~~---------~W~~~~~~---------------~~~~~~-~ 293 (394)
T PRK11138 249 ----DTTP----VV--VGGVVYALAYNGNLVALDLRSGQI---------VWKREYGS---------------VNDFAV-D 293 (394)
T ss_pred ----CCCc----EE--ECCEEEEEEcCCeEEEEECCCCCE---------EEeecCCC---------------ccCcEE-E
Confidence 0000 11 133455566677777776544432 33322111 011122 2
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeE
Q 001386 809 NDAYLFSASGGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 887 (1088)
Q Consensus 809 dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~ 887 (1088)
++..++...+|.+..+|..+|+.+....... ....+.++. + ..|+.++.||.+++.|..+|+.+...+-....+.+
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s 370 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS 370 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence 3444444458999999999998766543211 122333332 3 46778899999999999999988777543333332
Q ss_pred -EEECCCCCEEEEEeCCCcEEEEEc
Q 001386 888 -LVFSDALNILVSSGGDAQIFVWDV 911 (1088)
Q Consensus 888 -l~~s~dg~~las~s~Dg~i~iwd~ 911 (1088)
..+ .+..|+.++.||.|..++.
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 222 2457888899998887764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=102.89 Aligned_cols=296 Identities=13% Similarity=0.149 Sum_probs=187.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCC--CEEEEEecCCCCcE-EEEEEeCCCcEEEEe
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQI-SVITCGDDKTIKVWD 471 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~l-~l~s~s~d~~i~vwd 471 (1088)
-.+++.++..+|.|+-+|.++.-| +.+-|+...- .+.. +-.|.. .|-.+.|+|....- .+++.+ ...-.+|+
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~--~ppr-~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwn 97 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPF--TPPR-WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWN 97 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCC--CCce-eeeccCcchhcceecccCCCCceeEEecC-cchhhhhh
Confidence 457788999999999999999888 6666776432 2211 222332 46677888765432 445444 44556899
Q ss_pred CCCC---ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccC-CCEEEE
Q 001386 472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN-GRRLFS 546 (1088)
Q Consensus 472 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~-g~~l~~ 546 (1088)
+... ..-..+.+|...|+.+.|++.. ...+++++.|-.+..||+++..... ....-......+.|+.. +..+++
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 7643 3346678999999999998753 3589999999999999999876544 33333445566788764 445554
Q ss_pred EeeCCCCceeEEEEeCCCC-ceeEEEeccccccccEEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCC
Q 001386 547 CGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1088)
.. ...|.+||.+.| ..+..+++|. ..++.+.|..- ...+.+.+.||+|+.||............... ..
T Consensus 177 sh-----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~p 247 (1081)
T KOG0309|consen 177 SH-----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FP 247 (1081)
T ss_pred cc-----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Cc
Confidence 33 234999999865 5677788876 78888888653 35678899999999999875432222211111 23
Q ss_pred CceEEEecCC--CEEEEEeCCCcEEEE---------eCCC-CCcccccccccCcceeeeecCCCcceeccccCCceeecC
Q 001386 625 NPRICFNKNG--TLLAVIANENRIKIL---------ETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1088)
Q Consensus 625 v~~v~~s~~~--~~l~~~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 692 (1088)
|..-.+-|-| .++.-.-.+..+.++ +..+ .+.+..+.+|.+.|....|-..+.. .+
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~------------~~ 315 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC------------DG 315 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc------------cC
Confidence 4555555532 222222122233333 3332 2567778888888766655432211 11
Q ss_pred CCCCCCCcccccccCccceeccccc
Q 001386 693 DPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 693 ~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
+.....-.+++-+.|.++++|.+..
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCccceeEEEeecCCceEeeeccH
Confidence 1122234578999999999998653
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-06 Score=81.50 Aligned_cols=148 Identities=11% Similarity=-0.040 Sum_probs=106.0
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
+.++++|+|++++++.+....|..|.+...............+..=.+..|+.... .++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 78899999999999999999999999986543322223344555567889998887 7999999999999999865433
Q ss_pred E-----EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC--------ceEEEEEccCCCEEE
Q 001386 479 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLF 545 (1088)
Q Consensus 479 ~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~g~~l~ 545 (1088)
. +-..|.+.+..+.|++.+--.+|+..-.-+.+.+.|+++......+..... .+....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 224588999999998654445677766778899999998775443322221 255556666665555
Q ss_pred EEe
Q 001386 546 SCG 548 (1088)
Q Consensus 546 ~~~ 548 (1088)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-07 Score=89.41 Aligned_cols=254 Identities=13% Similarity=0.189 Sum_probs=158.4
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCce-----eEEEecCCCC------------CeEEEEEcCCC-CcEEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPHD-NNVIAI 857 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~sp~d-~~~las 857 (1088)
....|+++.|...|.++++|. +|.|.+|.-+... ....+++|.. .|..+.|-.+. ...+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 567799999999999999998 7889999765432 2333555542 35666665422 235556
Q ss_pred EeCCCeEEEEEcCCcee-------------------------------------e----ee-e-ccccCCeeEEEECCCC
Q 001386 858 GMDDSTILIYNARSSEV-------------------------------------I----SK-L-EGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~~-------------------------------------~----~~-l-~~h~~~V~~l~~s~dg 894 (1088)
.+.|.+|++|.+....+ + .+ . .+|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67899999998743200 0 00 1 3577789999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC--ccCCCCeEEEEEcCCCCEEEE--EeCCeEEEEEcCccee-ee--
Q 001386 895 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--MTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC-LK-- 967 (1088)
Q Consensus 895 ~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~fs~dg~~l~~--~~d~~i~vwd~~~~~~-~~-- 967 (1088)
..++++ .|-.|.+|+++-..... .+-....+ ......|++..|+|....+.. ++.|.|++-|++.... ..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sF--nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSF--NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCCce--EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 988876 46679999987533111 11111111 111135789999998766555 6779999999884321 11
Q ss_pred ----e--------eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc-eEEEeccccc----cCCCCccccccc-
Q 001386 968 ----Q--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAY----LRPTTSCLHVYP- 1029 (1088)
Q Consensus 968 ----~--------~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~----~~~~~~~~~~~~- 1029 (1088)
. ++.+-...|..+.||++|+++++-+. -+|++||+...+ ++..+..+.- +...+-.+.++.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 0 11122567889999999999997643 589999987653 3333321111 011111233333
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 1030 HAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 1030 ~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
..+.|+. |...+.+|+-.+...++-
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecC-Ccccccccccccceeeec
Confidence 5677886 456666676666555554
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-07 Score=89.76 Aligned_cols=119 Identities=21% Similarity=0.299 Sum_probs=90.5
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCce---eEEEecCCC-----CCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 796 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
.|...+.++.|..|.+.++++.+=.|-+|++.--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999986432 233344454 3478899999888889999999999999
Q ss_pred EcCCcee----------------eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 868 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 868 d~~~~~~----------------~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~ 915 (1088)
|++...+ +.-+.+-...|..+.|+++|+++++-+. -+|+|||+...+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9984321 1112223456888999999999997554 579999998743
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.7e-06 Score=78.59 Aligned_cols=199 Identities=14% Similarity=0.104 Sum_probs=134.4
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEE-ecCCCCCeE---EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTAT---SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~i~---~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
...+||.|+ .|...+|...+.+.... ...+...|+ ..+-+ .--+..++.|.++++.++.-+.....+....-
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcccceeecccc
Confidence 344677764 78999999986654332 233333332 22222 23455677888888888775543322221212
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 962 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~ 962 (1088)
.+.++++|+|++++++.++...|..|.++............... ..-.+..|+.....+|+ ..||++.|||++.
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 38899999999999999999999999998755333331111111 12467899999999988 5899999999986
Q ss_pred ceeee----eeecCCCcCEEEEEEeeCCC--EEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 963 LTCLK----QWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 963 ~~~~~----~~~~~h~~~v~~l~fs~dg~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
..... ...+.|.+.++.+.||+-|. +|+..-.-+.+.|-|+.++.-...+.+.
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 54332 23456899999999998664 3555556688999999999877766533
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.4e-06 Score=91.56 Aligned_cols=184 Identities=12% Similarity=0.073 Sum_probs=118.5
Q ss_pred EEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEEcCCceeeee
Q 001386 804 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISK 877 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~i~lwd~~~~~~~~~ 877 (1088)
+-++|||+.+...+ .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34567887775554 5778899999888777765332 456789999 788888776432 222222222111111
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--e
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 951 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~ 951 (1088)
+.-. .+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+.+||||++++++ .
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCC
Confidence 1100 00 133457887665 367799999887 22 1222233322 35679999999999994 5
Q ss_pred CCeEEEEEcCccee------------eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 952 ETHLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 952 d~~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
++++.|.|+++.+. ..+... .......+|.++|....|..-|..|..|++..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 78999999998653 222222 44556789999998888888999999999987
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-06 Score=87.50 Aligned_cols=214 Identities=13% Similarity=0.161 Sum_probs=145.1
Q ss_pred cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC--C-ceeEEeccCCccEEEEeeeeeCCceEEEEEec-CCeEEEE
Q 001386 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--G-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAW 514 (1088)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw 514 (1088)
-|...|+.+.-+.. + ++.+++.||.++.|--.. | +.+..+..|-+.|.+++. +-++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~--S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV--SYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc--cccceeEeeccCcccceeEE
Confidence 47777887766543 4 799999999999997332 1 234556678888888877 447778888777 9999999
Q ss_pred ECCCCCceEEecCCCCceEEEEEccCCC--EEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccccccEEEEEEeCCCC
Q 001386 515 LYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKD 591 (1088)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1088)
|+.+-.....+....-+-.+-.+...|. -+++.+. -.++.+.++|..... ....+.+. |..+|.++.+++.+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkkl--H~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKL--HFSPVKKIRYNQAGD 157 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceeccc--ccCceEEEEeecccc
Confidence 9987665433222222212222333332 2233322 235668999977554 23333322 248999999999999
Q ss_pred EEEEEeCCCcEEEEEcCC------CeeeEEEeCC-------CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001386 592 QILAAGDDHVIKIWDMNK------VQLLTTIDAG-------GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~------~~~~~~~~~~-------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
.+++....|.|.-|.... .+....++.. .......++.|+|+|..+.+-+.|..|++++..+++.++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999999873 1122222111 112345789999999999999999999999999998776
Q ss_pred ccc
Q 001386 659 AAG 661 (1088)
Q Consensus 659 ~~~ 661 (1088)
.+.
T Consensus 238 eiD 240 (558)
T KOG0882|consen 238 EID 240 (558)
T ss_pred hhh
Confidence 654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=83.87 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=122.0
Q ss_pred CCCEEEEE-eCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-cccc---C
Q 001386 809 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K 883 (1088)
Q Consensus 809 dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l-~~h~---~ 883 (1088)
++..++++ .++.+..||..+|+.+..+............ .+..+++++.++.++.+|..+|+.+... .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 44555555 5899999999999999887753321122222 2345666778889999999999998874 3221 1
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcc--CCCCeEEEEEcCCCCEEEEEeCCe-EEEEEc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA 960 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fs~dg~~l~~~~d~~-i~vwd~ 960 (1088)
.........++..++.+..++.|..+|+++|+..-........+... ....+..-....++..+++..++. +.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 11223333347888888889999999999987544333322221110 001122333344555555556675 555 99
Q ss_pred CcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001386 961 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 961 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~ 1011 (1088)
.+++.+.+.. ...+.. ....++..|+.++.++.|..||+.+|+.+..
T Consensus 191 ~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 191 ATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 9999664322 122222 2457788888888999999999999997643
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-05 Score=87.38 Aligned_cols=241 Identities=15% Similarity=0.201 Sum_probs=142.8
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001386 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
+.|.++.|..+.+.++.+...|.|.+-|.++......-.... .|.+++||||+..++..+..+++.+.... -.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~---GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN---GISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC---ceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 579999999999999999999999999888765544333333 48999999999999999998888775432 11110
Q ss_pred ccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEE
Q 001386 659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 738 (1088)
Q Consensus 659 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~ 738 (1088)
....+.+ ..+.+..+.+|++...-
T Consensus 145 E~~L~~d------~~~~sk~v~VGwGrkeT-------------------------------------------------- 168 (1265)
T KOG1920|consen 145 EKPLDAD------DERKSKFVNVGWGRKET-------------------------------------------------- 168 (1265)
T ss_pred ccccccc------cccccccceecccccce--------------------------------------------------
Confidence 0000000 00000000000000000
Q ss_pred EEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec-cCCCCCCCCeeEEEEecCCCEEEEEe
Q 001386 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSAS 817 (1088)
Q Consensus 739 ~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1088)
.|... .|.....+ .+.... .....-.+.=+.++|--||+++|+..
T Consensus 169 --qfrgs---------~gr~~~~~-----------------------~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 169 --QFRGS---------EGRQAARQ-----------------------KIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred --eeecc---------hhhhcccc-----------------------cccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 00000 00000000 000000 00000122334688999999999853
Q ss_pred -----C-CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCC---ceeeeeeccccCCe
Q 001386 818 -----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGHSKRV 885 (1088)
Q Consensus 818 -----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---~dg~i~lwd~~~---~~~~~~l~~h~~~V 885 (1088)
+ ..|++||-+ |..-.+-....+.-.+++|-| .|.++|+-. .|+.|.+|.-+. |+....+.....+|
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 4 679999987 554433333344557899999 788888743 455799988542 33333444455669
Q ss_pred eEEEECCCCCEEEE---EeCCCcEEEEEcCCCc
Q 001386 886 TGLVFSDALNILVS---SGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 886 ~~l~~s~dg~~las---~s~Dg~i~iwd~~~~~ 915 (1088)
..++|+.++..||+ ......|++|-+.+..
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 99999999999998 5555669999998854
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-06 Score=93.01 Aligned_cols=308 Identities=10% Similarity=0.109 Sum_probs=170.3
Q ss_pred ceeeeecCCCCeEEEEEcc----cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 337 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
-+...|+|... ++|+++. .|.|.|+- ++|++-+... -.-.+++++|+|..-.||
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------------------~P~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--------------------YPVHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--------------------cceehhhhccChHHHHHh
Confidence 34567889887 7787764 47888884 6676544211 112355699999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE--eccC--CccE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV 488 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~--~~~~--~~~v 488 (1088)
.|..-|.+.+|...+.+.-. ....|..+|.-+.||++|. .++++..-|.+.+|....-..+.. +-.| ...+
T Consensus 76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 99999999999988765322 4457999999999999999 899999999999998763222221 1122 2334
Q ss_pred EEEeeeeeCCce------EEEEEecCCeEE-EEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001386 489 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1088)
Q Consensus 489 ~~~~~~~~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 561 (1088)
+-++|.-+.++. ..+..+.+..+- .++++......... -.=.|+|..++.++. +++|+-.|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvd 218 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVD 218 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEc
Confidence 444444333321 122223332222 33332111111000 012367777777664 44466665
Q ss_pred CCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC-C----------------------------Cee
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-K----------------------------VQL 612 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~----------------------------~~~ 612 (1088)
- .|+.....+... . ..+-|.+...-+++.-.+-++.++-.. + |-+
T Consensus 219 q-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred C-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence 3 333333332211 0 001111111111111111111111100 0 100
Q ss_pred e--EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC----------cccccccccCcceeeeecCCCccee
Q 001386 613 L--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN----------SVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 613 ~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
. ..+.. .....+.|++++..+..++.|...|.+.+|.-.... .+.........|+.+.|.|.....+
T Consensus 293 r~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 293 RKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred cCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence 0 00101 112357899999999999999999999999654331 1222333456788888988777666
Q ss_pred ccccCCceee
Q 001386 681 AGIANGSVSV 690 (1088)
Q Consensus 681 ~~~~~~~~~~ 690 (1088)
+.+....+.+
T Consensus 372 vn~~~~v~ll 381 (1416)
T KOG3617|consen 372 VNTEEDVVLL 381 (1416)
T ss_pred hhhhhheeee
Confidence 6665544444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-05 Score=78.82 Aligned_cols=251 Identities=15% Similarity=0.182 Sum_probs=156.0
Q ss_pred EEEEEEecCCceEEEecc----------ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC---CCCCCeeE
Q 001386 737 ISRLTYNNGGQAIFALAS----------NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS---NSQEAVPC 803 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~ 803 (1088)
...++.+|+++.+++... ...|.+||..+- .......++.. ........
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL------------------~~~~EI~iP~k~R~~~~~~~~~ 99 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL------------------SPTGEIEIPPKPRAQVVPYKNM 99 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT------------------EEEEEEEETTS-B--BS--GGG
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC------------------cccceEecCCcchheecccccc
Confidence 345778899998876432 345667765432 22333333321 01123345
Q ss_pred EEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC-Cceeeeee-
Q 001386 804 FALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISKL- 878 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~-~~~~~~~l- 878 (1088)
+++|.||+++.+.. ...|.|.|+...+.+.++..+.+ .. .+ |.+++-+.+-+.||++.-..+. .|+...+.
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-~~--iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-WL--IY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-EE--EE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-EE--EE-ecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 78999999999886 56799999999999988874432 11 12 2133457788899999998887 45543221
Q ss_pred ---ccccCC-eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCccCCCCeEEEEEcCCCCEEE
Q 001386 879 ---EGHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD------GVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 879 ---~~h~~~-V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
..-..+ +..-+++..+..++..+.+|.|+--|+............... +-.. +.-.-+++++..+.|.
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP--GG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP--GGWQLIAYHAASGRLY 253 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE---SSS-EEEETTTTEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC--cceeeeeeccccCeEE
Confidence 111122 223344555666666889999999999887655544444332 1111 3456789988776665
Q ss_pred E-E---eCC-------eEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEEec
Q 001386 949 L-V---HET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 949 ~-~---~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
+ . .++ .|-++|+.+++.+..+... .++.++..|.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 5 2 222 4888899999999887653 3577999999887 444444 57899999999999998876
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-07 Score=92.01 Aligned_cols=168 Identities=16% Similarity=0.105 Sum_probs=126.1
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d 417 (1088)
+.++||-+-.-+-++.+.+..|-+-|++||.... +. ..+.|.++.|...+.++..|..+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence 3446664332233445556788999999986432 22 56789999999999999999999
Q ss_pred CEEEEEEccCCCc--ccceeEeccCCCCEEEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCce---eEEeccCCccEEEE
Q 001386 418 HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 491 (1088)
Q Consensus 418 g~i~vwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~ 491 (1088)
|.|...|+..+.. .... .---|...|+++.... +++ +|.+.+.+|.|++||.+--++ +.++.||...-..+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999986521 1111 1225889999998777 555 788899999999999987666 88999997766666
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 529 (1088)
-++-.+....+++++.|-..|+|.++.+....++....
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 56656666789999999999999999888777665543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=83.16 Aligned_cols=209 Identities=14% Similarity=0.204 Sum_probs=125.1
Q ss_pred ceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~ 416 (1088)
|+.+.|+-+- .|+++..++.+.....-++.+.. .|+......++. .+..|.++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~--~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFK--VLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCcee--eeeccCCCCCcccccccCCceEecCC
Confidence 6667777654 57888888887777666554432 121111111111 13345555555555556788999999
Q ss_pred CCEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeccCCccEEE
Q 001386 417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
||.+.+.+.+.-..+. ..+. .|.+ -.+......++ .+.+++ .-+..+.|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 1222 11222333344 233222 1223456665543322111112234888
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
++-+|... +.+++|+.||.+-+||++...... .+..|..++..+-|+| ++..|++++. ++.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88887654 689999999999999999875543 5667888999999999 6778888876 44599999764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.9e-05 Score=83.30 Aligned_cols=267 Identities=13% Similarity=0.179 Sum_probs=150.0
Q ss_pred cCCCCeEEEEE--------cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 343 spdg~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
||||+++|+.- +..+.+.|||+.+++.... ......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 78999655522 1236789999999765532 1125678899999999999998
Q ss_pred eCCCEEEEEEccCCCcccceeEecc-------C---------CCCEEEEEecCCCCcEEEEEEeCCCc------------
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT------------ 466 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~l~l~s~s~d~~------------ 466 (1088)
. ++.|.+++..+++..+. +..| - -+.-..+.|||||+++.++... +..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence 5 56799999887743321 1222 0 1123568899999953322221 111
Q ss_pred -----------------------EEEEeCCCCceeE-Ee----ccCCccEEEEeeeeeCCceEEEEE--ecCC---eEEE
Q 001386 467 -----------------------IKVWDAVTGSRTY-SF----EGHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA 513 (1088)
Q Consensus 467 -----------------------i~vwd~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~~~l~s~--~~dg---~i~i 513 (1088)
+.|+|+.+++... .. ..-...+..+.|.+ ++..|+.. ..+. .+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 2344555554321 11 12233455566643 44423332 2222 2666
Q ss_pred EECCCCCceEEecCC-CCc---eEEEEEc-cCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEE-EEEEe
Q 001386 514 WLYDSLGARVDYDAP-GLG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS-VVHFD 587 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~-~~~---v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~ 587 (1088)
+|..++......... ... .....|. +++..++..+. ++|-..|++++..++... .+.... ..|. .+.++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~---~~V~~i~~~d 289 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGD---WEVTSILGWD 289 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SS---S-EEEEEEEE
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCc---eeecccceEc
Confidence 677766554433222 222 2245554 88887777776 777889999998888744 333222 4564 46788
Q ss_pred CCCCEEEE-EeC----CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 588 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 588 ~~~~~l~~-~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
++++.++. +.. ...++.-++..+..+..+...... ...+.|||++++++....
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 88777664 443 234555566623445555544332 148999999999876654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0012 Score=64.05 Aligned_cols=135 Identities=14% Similarity=-0.009 Sum_probs=88.4
Q ss_pred eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccc
Q 001386 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1088)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1088)
.+++.|+..+.+.--|..++.......... .+.+-+.- -|++++.+..+ +.++..+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy~----g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCYS----GGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEcc----CcEEEEEecchhheeeeeehh---h
Confidence 467777888888877777776655433222 23222221 56678888763 449999999998777776544 2
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEEeCCCcE
Q 001386 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 646 (1088)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 646 (1088)
--......+++..+.+|+.|++.+..|..+..++...+..+.. ..+-+..| ++.+. .+...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly-~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLY-AAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEE-EEeccceE
Confidence 2233456788999999999999999999999998887765543 23344455 44433 33333433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-07 Score=63.42 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 872 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 872 ~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
|+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-06 Score=95.34 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=132.6
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeE
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 887 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~ 887 (1088)
++..++.|+ ...+..+|+.+.+..+...-..+.++-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 444566665 678899999998888777655555655555 6789999999999999999999999999999999976
Q ss_pred EEECCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC--CCEEEEEeCCeEE
Q 001386 888 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 956 (1088)
Q Consensus 888 l~~s~dg~~las~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d--g~~l~~~~d~~i~ 956 (1088)
+.. .|+.|++||. |.-|+|||+..-. ...+++.+.+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr--al~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR--ALSPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhh--ccCCcccccC-------chhhhhcccccceEEEEeccccee
Confidence 555 6899999975 4568999998722 1222333322 245677775 3444457889999
Q ss_pred EEEcCcce-e--eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 957 IYEAEELT-C--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 957 vwd~~~~~-~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
+-|..+.. . -.......+..+..+++|++|..++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99944322 2 1112222355699999999999999999999999998
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-05 Score=87.13 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=90.7
Q ss_pred EecCCCEEEEEeCCcEEEEEcCC----c-eeEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEEcCCcee-----
Q 001386 806 LSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEV----- 874 (1088)
Q Consensus 806 ~s~dg~~l~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~i~lwd~~~~~~----- 874 (1088)
+.++|++... .+++|.+.|..+ + +.+..+. -......+++|| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457776665 467899999988 3 4444443 456678899999 6776655 45588999999988542
Q ss_pred -------eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC------ceeeeeeeecCCCCccCCCCeEEEEE-
Q 001386 875 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW------GIQTCRSLQTPDGVMTLAPSETHIQF- 940 (1088)
Q Consensus 875 -------~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~f- 940 (1088)
+.+.+--.+ -...+|.++|....|...|..|..|++... +. ....+....-|.. +-++.-
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~----pgh~~~~ 434 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQ----PGHNHAS 434 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc-CCcceecccCCCc----cceeeec
Confidence 333333233 345789999998888999999999999862 11 1123333332222 334444
Q ss_pred -----cCCCCEEEEE
Q 001386 941 -----HKDQTRFLLV 950 (1088)
Q Consensus 941 -----s~dg~~l~~~ 950 (1088)
.|||++|++.
T Consensus 435 ~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 435 MGETKEADGKWLVSL 449 (635)
T ss_pred CCCcCCCCCCEEEEc
Confidence 7899999983
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-05 Score=78.48 Aligned_cols=285 Identities=12% Similarity=0.124 Sum_probs=156.0
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEEeCCCC---
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 621 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 621 (1088)
..++++|..+++.+..+..- -...+..+|+++.+++++ ..-.|.+||..+-.+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 35999999999988777753 344567899999998754 334699999999988887665432
Q ss_pred --CCCCceEEEecCCCEEEEEeC--CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCC
Q 001386 622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1088)
Q Consensus 622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 697 (1088)
.......+++.|++++.+... ...|.|.|+..++.+..+....- ..+-|. .
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~--------------------~- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPS--------------------G- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEE--------------------E-
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEec--------------------C-
Confidence 123456888999998877654 46788888887766554432211 011111 0
Q ss_pred CCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCc
Q 001386 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPR 777 (1088)
Q Consensus 698 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 777 (1088)
.+.+.+-+.||.+....++............-......-+..-+++..+..++-.+-+|.|+--++....... ..
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-----~~ 221 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-----GK 221 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-----EE
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-----cC
Confidence 0112333344444433333111111111111111122223334455555555556667777766665443211 11
Q ss_pred ccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe----C-------CcEEEEEcCCceeEEEecCCCCCeEEEE
Q 001386 778 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----G-------GVISLYIVMTFKTILTIMPPSPTATSLA 846 (1088)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d-------g~i~iwd~~~~~~~~~~~~~~~~i~~l~ 846 (1088)
-|.+.+..... ... ..+.-.-+++++....|.+.- + ..|.++|+.+++.+..+.. ...+.+++
T Consensus 222 ~~~~~t~~e~~-~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~ 295 (342)
T PF06433_consen 222 PWSLLTDAEKA-DGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIA 295 (342)
T ss_dssp EEESS-HHHHH-TTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEE
T ss_pred cccccCccccc-cCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEE
Confidence 12221100000 000 012223467777655555432 1 1389999999999998873 34577999
Q ss_pred EcCCCCcEEEEE-eCCCeEEEEEcCCceeeeeecc
Q 001386 847 FNPHDNNVIAIG-MDDSTILIYNARSSEVISKLEG 880 (1088)
Q Consensus 847 ~sp~d~~~lasg-~~dg~i~lwd~~~~~~~~~l~~ 880 (1088)
.+.++..+|++. ..++.+.+||..+|+.+.++++
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 999666577654 4579999999999999988874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00044 Score=66.93 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=94.4
Q ss_pred eecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEE
Q 001386 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1088)
Q Consensus 341 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i 420 (1088)
..-+|.+.+++.|+..+.+.--|..+|+..-... -+..|.+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcE
Confidence 3445667789999999999999999998664311 12233332222 47889999999999
Q ss_pred EEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCce
Q 001386 421 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500 (1088)
Q Consensus 421 ~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 500 (1088)
++-+.++|+....+..+.. -=......+++. ++..++.|++.+..|..+..++...+...+...+-++.+- ++
T Consensus 76 Yfl~~~tGs~~w~f~~~~~---vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~- 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILET---VKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG- 148 (354)
T ss_pred EEEEecchhheeeeeehhh---hccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc-
Confidence 9999999976654332221 112234566777 8999999999999999999999887644333333333221 22
Q ss_pred EEEEEecCCeEEE
Q 001386 501 FIFSISVDGKIKA 513 (1088)
Q Consensus 501 ~l~s~~~dg~i~i 513 (1088)
.|..+...|.|.-
T Consensus 149 sly~a~t~G~vla 161 (354)
T KOG4649|consen 149 SLYAAITAGAVLA 161 (354)
T ss_pred eEEEEeccceEEE
Confidence 3444444454443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-05 Score=80.74 Aligned_cols=251 Identities=12% Similarity=0.151 Sum_probs=148.9
Q ss_pred eecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
++.+|+..|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999776 78889999999999999976555 45556 78999999999877 8899999999999
Q ss_pred EeCCCCce-eEEecc--CCccEEEEeeeee----CCceEEEEEecCCeEEEEECCCCCc--eEEec-CCCCceEEEEEcc
Q 001386 470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA 539 (1088)
Q Consensus 470 wd~~~~~~-~~~~~~--~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~s~ 539 (1088)
||++..+- +..+.+ ...+|..++..+. +.|.+++..+.+ +..|++..... ..... ...+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 222222 2334444332211 122344444433 44565543222 11122 2244566777777
Q ss_pred CCCEEEEEeeCCCCceeEE----EEeCCCCceeEEEe-cc---cccc-ccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCC
Q 001386 540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ-GL---QLQH-NSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~-~~---~~~~-~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1088)
-.+.++....+...-..++ --|-.+|..+-.-+ ++ ...+ ..-..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6677766655432211111 11222333221111 11 0000 00111222345566655 55668899999999
Q ss_pred CeeeEEEeCCCCCCCCceEEEec-C-CCEEEEEeCCCcEEEEeCC
Q 001386 610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 652 (1088)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iwd~~ 652 (1088)
++.++++.... +|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998663 355555443 3 34565555 4588888654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-05 Score=88.26 Aligned_cols=283 Identities=11% Similarity=0.162 Sum_probs=159.4
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
..+.|.++.|.-++.. ++.+..+|.|.+-|.++....- ...-...|.+++||||++.+|
T Consensus 67 gd~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEE
Confidence 3469999999999884 6777888999999988876443 233568899999999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEec---cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccCCccE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPV 488 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~---~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~~v 488 (1088)
..+..+++.+-+-. -..+... .+. ...+....+-|-...++ +-|+ .|...--+.... +.+.....+ ..=
T Consensus 126 liT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~ 198 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHK 198 (1265)
T ss_pred EEeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCC
Confidence 99988877664331 1111100 010 00011222333222221 1111 111111110000 000000111 112
Q ss_pred EEEeeeeeCCceEEEEE-----ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 489 YSLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
++++| .+||+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++..+
T Consensus 199 ~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 199 TSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred ceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 34555 6788888873 233789999876 3332222233334567999999999998876544 4468888744
Q ss_pred CCceeEEEeccc-cccccEEEEEEeCCCCEEEE---EeCCCcEEEEEcCCCeeeE--EEeCCCCCCCCceEEEecCC-CE
Q 001386 564 EGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLLT--TIDAGGGLPENPRICFNKNG-TL 636 (1088)
Q Consensus 564 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~-~~ 636 (1088)
|-.-..+.... .....+..++|+.++..|++ ......|++|-+.+..... .+.... ..-+.|+|.. ..
T Consensus 275 -GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~----~~~~~W~p~~~~~ 349 (1265)
T KOG1920|consen 275 -GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ----KALLMWDPVTEKT 349 (1265)
T ss_pred -CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc----cccccccCCCcee
Confidence 32222221111 01134899999999999888 5555669999987754432 222222 1227888832 34
Q ss_pred EEEEeCCCcEEEEeCC
Q 001386 637 LAVIANENRIKILETP 652 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~ 652 (1088)
+.+...+|...+++..
T Consensus 350 L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 350 LHVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEEecCCcEEEEEEE
Confidence 4444466766665544
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.2e-07 Score=83.37 Aligned_cols=134 Identities=23% Similarity=0.266 Sum_probs=95.7
Q ss_pred HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHH
Q 001386 38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQ 117 (1088)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1088)
...++++|++||++.|++.+....+--....+ .+.|.|++|+|+|||..++..+|+.+.|+++.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 67899999999999999999876321111112 48999999999999999999999999999997665434466777777
Q ss_pred hhccccccc--ccccccccCCChHHHHHHHHHHHhhcccCccccccccCCCcc-hHHHHHHHHHHHHHH
Q 001386 118 LLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1088)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 183 (1088)
++...+..+ ...+..+. ....|.++.+.+.+.+-.... +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 777665544 22223221 236788888888887655332 44 467888888776554
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.1e-07 Score=61.65 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEe
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd 363 (1088)
.+++++.+|.+.|++|+|+|++. ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 45788999999999999999998 799999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.4e-06 Score=78.41 Aligned_cols=195 Identities=14% Similarity=0.193 Sum_probs=118.7
Q ss_pred CCcEEEEEeCCCeEEEEEcCCce-eeeeecc-ccCCeeEEEECCCCCEEEEEe-----CCCcEEEEEcCCCceeeeeeee
Q 001386 851 DNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 923 (1088)
Q Consensus 851 d~~~lasg~~dg~i~lwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~las~s-----~Dg~i~iwd~~~~~~~~~~~~~ 923 (1088)
-+.-++++..||.+.+++.+.-. ...+... |.+. .+...-..+..+.+++ .-+..+.|+++..+ .....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~---t~~~~ 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK---TLIPS 175 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc---ccccc
Confidence 35678999999999999877511 1111111 2221 1122223344444332 11335677766422 11111
Q ss_pred cCCCCccCCCCeEEEEEcCCCCEEEE-E-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEee-CCCEEEEEeCCCcEEE
Q 001386 924 TPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 1000 (1088)
Q Consensus 924 ~~~~~~~~~~~v~~~~fs~dg~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~s~dg~v~v 1000 (1088)
. .....|.+++-.|..+.+++ | .||.+.+||.+.......++..|..++..+-|-| ++..|++++.||.+--
T Consensus 176 ~-----~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 176 K-----KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred c-----cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 1 11124888999998777776 4 6789999999999888888899999999999998 7789999999999999
Q ss_pred EEcCCCceEEEec---cccccCCCCcccccc--------ceEE-EECCCCCCEEEEEeCCCcEEEEe
Q 001386 1001 HEASNLEVQCRIL---STAYLRPTTSCLHVY--------PHAI-AAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 1001 wd~~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~-~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
||..+--+-+... ...|+...+-..++. ..++ +|+- -|..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 9988643322211 112222211111011 0111 1332 456899999999998875
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00038 Score=76.96 Aligned_cols=307 Identities=12% Similarity=0.096 Sum_probs=156.4
Q ss_pred ccCCCEEEEEeeCC-----CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 538 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 538 s~~g~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888877643211 1235589999999876554443 2 5678889999999998886 57899999887754
Q ss_pred eEEEeCCCC---------------CCCCceEEEecCCCEEEEEeCC-CcEEEEeCCCCCcccccccccCcceeeeecCCC
Q 001386 613 LTTIDAGGG---------------LPENPRICFNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 613 ~~~~~~~~~---------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
.+....... ...-..+.||||+++||....| ..|..+.+........ .-..+..+.+.
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~~~~~YP--- 149 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEVESIRYP--- 149 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EEEEEE-----
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCCcccccccC---
Confidence 433221100 1123578999999999887643 4444433221100000 00011111111
Q ss_pred cceeccccCCceeecCCCCCCCCcccccccCccc--eeccccccCCCcceeeecCC--ccccccEEEEEEecCCceEEEe
Q 001386 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS--EVEKPLFARPSECQSLLLPS--KVKANKISRLTYNNGGQAIFAL 752 (1088)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i--~vw~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~ 752 (1088)
..|...-.+ .++++..++.. .+..+. .....-+..+.|+++++.++..
T Consensus 150 -------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 150 -------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred -------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcEEEEE
Confidence 112222222 33444322221 222221 2245678899999999844433
Q ss_pred cc--c-cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe-cCCCEEEEEe--CCc--EEEE
Q 001386 753 AS--N-GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--GGV--ISLY 824 (1088)
Q Consensus 753 ~~--d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~--dg~--i~iw 824 (1088)
-. + ....+..+ |..++.+.........+--.......+. +++..++..+ +|- |.++
T Consensus 202 ~~nR~q~~~~l~~~----------------d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 202 WLNRDQNRLDLVLC----------------DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEETTSTEEEEEEE----------------EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EcccCCCEEEEEEE----------------ECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 32 2 22333222 2233332221111111112223355665 7776666655 554 7777
Q ss_pred EcCCceeEEEecCCCCCeEE-EEEcCCCCcEEEEEeCCC----eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEE
Q 001386 825 IVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 899 (1088)
Q Consensus 825 d~~~~~~~~~~~~~~~~i~~-l~~sp~d~~~lasg~~dg----~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las 899 (1088)
+...+. ...+....-.|+. +.++++++.+..++..++ .++.-++.++..+..+....+.-..+.|||+|++++-
T Consensus 266 ~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 266 DLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp ETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred cccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 777665 3455555556744 678885555666776543 5666677723344555544333368999999999774
Q ss_pred E
Q 001386 900 S 900 (1088)
Q Consensus 900 ~ 900 (1088)
.
T Consensus 345 ~ 345 (353)
T PF00930_consen 345 T 345 (353)
T ss_dssp E
T ss_pred E
Confidence 3
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0018 Score=68.73 Aligned_cols=278 Identities=13% Similarity=0.132 Sum_probs=138.2
Q ss_pred eeecCCCCeEEEEEcccC--cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC-CCeEEEEECCCCCEEEEEeC
Q 001386 340 MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~las~~~ 416 (1088)
=+|.+||++||.++..|| .+.+-|+.+++..+ |+... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 368999998888888776 46677778887654 33222 22334677899999887767
Q ss_pred CCEEEEEEccCCCcccceeEeccCCCCEEEEEec--CCCCcEEEEEEe----------------------CCCcEEEEeC
Q 001386 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA 472 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~s----------------------~d~~i~vwd~ 472 (1088)
...|+--|+.+.+.. . .+.....-+....|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 778999999997632 2 233444445445553 4555 332221 1234555677
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCe-----EEEEECCCCCc-eEEecCC--CCceEEEEEccCCCEE
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGA-RVDYDAP--GLGCTRMAYSANGRRL 544 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~-~~~~~~~--~~~v~~~~~s~~g~~l 544 (1088)
.+|+....+. -...+..+.|+|.. ..+++-+..|- -|||-+++... ...+..+ ...+..=-|.|||..|
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~d--p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTD--PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTE--EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred CCCceeEEEe-cCccccCcccCCCC--CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 8877544443 45566777776643 33444333331 36776654332 2222222 2234555689999988
Q ss_pred EEEee-CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC----------------CcEEEEEc
Q 001386 545 FSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDM 607 (1088)
Q Consensus 545 ~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~ 607 (1088)
...+. .+..+..|.-+|+.+++....... ....-+..++||+.++-=+.| --|+++++
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 87554 344466788899998866443222 123344556888877663322 14667888
Q ss_pred CCCeeeEEEeCC--------CCCCCCceEEEecCCCEEEEEeC-CCcEEEEe
Q 001386 608 NKVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 650 (1088)
Q Consensus 608 ~~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd 650 (1088)
..++........ .....-....|+|||+.++..++ .|...||-
T Consensus 328 ~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 328 EAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred ccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 876654322211 01112357899999998877665 56666554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0002 Score=79.37 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=160.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|.--+++..++ +++.|+.-|.+.+|+-.+|+..... ..+-.+.+..+..|++..++|.|+
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhhc
Confidence 666667777788 6899999999999998888755320 233556777888999999999999
Q ss_pred CCCEEEEEEccCCCcccceeE---eccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeccCCccE
Q 001386 416 SKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAPV 488 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~----~~~~~~~~~~~~v 488 (1088)
..|.|.++-+..+..-..... -..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+....+.|
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 999999998887443222111 123678999999999999 7999999999998877762 1122333345666
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCc--eEEEEEccC----CCEEEEEeeCCCCceeEEEEeC
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--CTRMAYSAN----GRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
..+... ++.+|++. .-+. .+++.+.......-..+... -...+|-|. .+-.+.++..+ .++|..
T Consensus 174 VQlD~~---q~~LLVSt-l~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-----~RlWea 243 (726)
T KOG3621|consen 174 VQLDYL---QSYLLVST-LTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-----LRLWEA 243 (726)
T ss_pred EEeecc---cceehHhh-hhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-----CceEEe
Confidence 666542 22333333 2222 23444333221111111111 223344443 33444554433 678876
Q ss_pred C-CCceeEEEeccc---------------------------cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE
Q 001386 563 S-EGAIKRTYQGLQ---------------------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 563 ~-~~~~~~~~~~~~---------------------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
. .|+.+++..-.. .+-+-.. +. .-.+..+++-++-| |+|+|.++.+.+.
T Consensus 244 d~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k-~~-~l~~~~vLa~te~G-iyv~d~~~~~v~l 320 (726)
T KOG3621|consen 244 DFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSK-SS-TLHSDRVLAWTEVG-IYVFDSNNSQVYL 320 (726)
T ss_pred ecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccce-eE-EeecceEEEeecce-EEEEEeccceEEE
Confidence 5 344444332110 0000011 11 11223455555545 8888887655444
Q ss_pred EEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
-..... .|..+ +..++-|.+-..|+.+++..+.+.
T Consensus 321 ~se~~~---DI~dV--s~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 321 WSEGGH---DILDV--SHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred eecCCC---ceeEE--eecCceEEEEecCCceeEEEeehh
Confidence 332221 23333 344666777777777777766654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-05 Score=87.81 Aligned_cols=188 Identities=12% Similarity=0.126 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001386 840 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~ 919 (1088)
..++|++++ +++++-|+.+|.|++++... .. .....|+.. ..+|.+++|||.||+|.|-.+.+++....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777885 47999999999999999763 33 333345554 56899999999999999999988653332
Q ss_pred eeeecCCCCccCCCCeEEEEEcCC-----CCEEEEEeCCeEEEEEcCcceee-eeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEELTCL-KQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~d-----g~~l~~~~d~~i~vwd~~~~~~~-~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
..++ .++.+++++|| .+.+++|+...+.++.-.-.... ........++|.++.|- |.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 2222 25889999998 56677755544777764321111 11122337889999985 66888776
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 994 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 994 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.+| |+|||+.++..+..+.+....+. ....+..+.|.+ .+.|+.| ...+|.+..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 665 99999999999988875542221 234455688887 3556655 66688888887
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.8e-06 Score=83.42 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhhhhcCcHHHHHHHHHhcCCC--------hhHHHHHHHhcCccHHHHHHhhccC-ccccCccccchhhhH
Q 001386 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE 75 (1088)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (1088)
+.-+-|+|+.||..+||..+|..|-++|.+. -++..++++|++|+...|+...+.- ..+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 3457899999999999999999999999985 2478899999999999998877542 1111 122237799
Q ss_pred HHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhccccc
Q 001386 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDI 124 (1088)
Q Consensus 76 l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 124 (1088)
++.|.|+||+..+++.+|+.+.++++.|......+.++....++.++..
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999987677888888888887544
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-06 Score=85.45 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=102.6
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l 411 (1088)
.++.|.+++|...+. ++..|..+|.|...|+..+..=. .| |. .---|...|+++..-. ++.+|
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~-----~~----~a------~rlyh~Ssvtslq~Lq~s~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN-----GW----CA------QRLYHDSSVTSLQILQFSQQKL 314 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC-----Cc----ce------EEEEcCcchhhhhhhccccceE
Confidence 456899999999887 89999999999999998762110 00 00 0122889999998877 88999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe--cCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
.+.+.+|+|++||..--++.+....+.||...-..+-+ .+... .+++++.|...+||.++.|..+.++...
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecccCceeeccCCC
Confidence 99999999999999876664455578899765444443 33344 7888999999999999999999887643
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00065 Score=78.46 Aligned_cols=248 Identities=10% Similarity=0.106 Sum_probs=142.1
Q ss_pred CEEEEE-eCCcEEEEEcCCceeEEEecCCCCC-----e-EEEEEcCCCCcEEEEEe---------CCCeEEEEEcCCcee
Q 001386 811 AYLFSA-SGGVISLYIVMTFKTILTIMPPSPT-----A-TSLAFNPHDNNVIAIGM---------DDSTILIYNARSSEV 874 (1088)
Q Consensus 811 ~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-----i-~~l~~sp~d~~~lasg~---------~dg~i~lwd~~~~~~ 874 (1088)
..++.+ .++.|.-+|.++|+.+..+...... + .+..+. ++ +++.++ .+|.++-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 344444 4899999999999999887644321 1 122333 23 454554 368899999999998
Q ss_pred eeeeccccC--------------------Ce-eEEEECCCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 001386 875 ISKLEGHSK--------------------RV-TGLVFSDALNILVSSGGDA------------------QIFVWDVDGWG 915 (1088)
Q Consensus 875 ~~~l~~h~~--------------------~V-~~l~~s~dg~~las~s~Dg------------------~i~iwd~~~~~ 915 (1088)
+..+..... .| ...++.+.+..++.++.++ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877654211 01 1234445566777776665 68888998887
Q ss_pred eeeeeeeecCCCC--ccCCCC-eEEEEEcCCCC---EEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE
Q 001386 916 IQTCRSLQTPDGV--MTLAPS-ETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 988 (1088)
Q Consensus 916 ~~~~~~~~~~~~~--~~~~~~-v~~~~fs~dg~---~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 988 (1088)
..=.......... .....+ +..+. .-+|. .+++ +.+|.+...|..+|+.+...... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ce
Confidence 4422111111000 000000 11111 12343 3444 46889999999999988764322 11233333 23
Q ss_pred EEEE------------------eCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCc
Q 001386 989 VFTS------------------FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1050 (1088)
Q Consensus 989 l~s~------------------s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~ 1050 (1088)
++.+ ..+|.+.-.|+.+|+.+.+...........-+.......++. .+..+++++.||.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~ 417 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGY 417 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCe
Confidence 3332 236788889999999887766331110000000011111222 3478889999999
Q ss_pred EEEEeCCCCCCCccccCCCCc
Q 001386 1051 VYVIEPNEPGDTWAVLPPDEI 1071 (1088)
Q Consensus 1051 v~~w~l~~~~~~~~~~~~~~~ 1071 (1088)
|+.+|....+..|...-+...
T Consensus 418 l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 418 FRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred EEEEECCCCceeeEEECCCCc
Confidence 999999999999987654433
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=82.97 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=133.5
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCC-eeEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001386 846 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 918 (1088)
Q Consensus 846 ~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~las~s~Dg~-----i~iwd~~~~~~~~- 918 (1088)
+|++ ++..+|.|+.+|.|.+.+ ++-+.+..++++... |..+-...+..+|++.+.|+. |+||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 677999999999998887 335556788887777 444444444478999888764 8999998753222
Q ss_pred eeee---ecCC-CCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcC--cceeeeeee-cCCCcCEEEEEEeeCCCEEE
Q 001386 919 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE--ELTCLKQWF-PISSVPISQATFSCDCRMVF 990 (1088)
Q Consensus 919 ~~~~---~~~~-~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~--~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~ 990 (1088)
..++ .... .......++.+++.+.+-+.+|+| .+|.|..+.-+ ..+-.+... ..-..+|+.++|-.|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2333 2221 111123578999999999999998 67888887532 112122211 11278999999999998855
Q ss_pred EEeCCCcEEEEEcCCCce-EEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 001386 991 TSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1066 (1088)
Q Consensus 991 s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~~~~ 1066 (1088)
.+.+-..|.+|.+..... .+... . .++...|.+|++.. ..|++| .+..|.+|+....++-|+..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld-----~-----~G~~lnCss~~~~t-~qfIca-~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD-----N-----NGISLNCSSFSDGT-YQFICA-GSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec-----c-----CCccceeeecCCCC-ccEEEe-cCceEEEEcCCCcceeeeec
Confidence 555666899999984431 11111 1 12445677788622 235544 46788999998877666544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00012 Score=75.30 Aligned_cols=249 Identities=13% Similarity=0.103 Sum_probs=141.6
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+.|.+|..-|..++|||...-|+..++.+..|.|.|+.+...+.. +..| ..+++++|.-|
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDld 246 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLD 246 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccC
Confidence 467788889999999998876889999999999999999877654 2334 78999999986
Q ss_pred CC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC------CCCcEEEEEEeCCCcEEEEeCCC--Ccee
Q 001386 408 GS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA------PCKQISVITCGDDKTIKVWDAVT--GSRT 478 (1088)
Q Consensus 408 g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~------d~~~l~l~s~s~d~~i~vwd~~~--~~~~ 478 (1088)
.. +|..|..+|.|.|||+...+.......-.-...+|..++.-+ -|. +++..+.+ +..|++.- +...
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCCC
Confidence 54 566677889999999986653322111111223455544333 233 34444333 55676442 2222
Q ss_pred EEec-cCCccEEEEeeeeeCCceEEEEEecCCe------EEE-EECCCCCceEEec-CC-CC------ceEEEEEccCCC
Q 001386 479 YSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDYD-AP-GL------GCTRMAYSANGR 542 (1088)
Q Consensus 479 ~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~~-~~-~~------~v~~~~~s~~g~ 542 (1088)
..++ +..+...++..++..+ ..|++.-.+.. |-. -|...+..+.... .+ +. .-..+.-.++.+
T Consensus 323 ~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred cccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence 2222 1244555555544322 34444332110 000 0111111111000 00 00 011222345666
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEeCCCcEEEEEcC
Q 001386 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
+++..+. ....+.+||+.+++.++++.... +|..++.. -++.-++..-.|..++||..+
T Consensus 402 ~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 402 YIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 6666543 36679999999999999988654 67666653 334444444456677887654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.5e-05 Score=87.17 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=141.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
.++.|+....+..+|+.+++..+......+.|.-++. +++++.+|...|+|.+-|.++.+.+.++..|.+.+. .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence 4677888888889999999888777655656766653 668999999999999999999999999999998885 5
Q ss_pred EccCCCEEEEEeeCCC-----CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC-CCEEEEEeCCCcEEEEEcCC-
Q 001386 537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 609 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~- 609 (1088)
|+-.|+.|++||.+.. .+..|.+||++..+.+..+.-+. ++ .-+.|+|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 6678999999987653 25678999999887766665544 22 44567775 45778888999999988332
Q ss_pred Cee-eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.+ ......+.....+..+.++++|..++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 222 2222222223358899999999999999999999999843
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00021 Score=80.30 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=125.2
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
.+.+++++ +++++.|+.+|.+++++.+.... +. + .|... ..+|.++++
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~--------------~~-------~---~~s~~------~~~Gey~as 88 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK--------------TN-------F---DHSSS------ILEGEYVAS 88 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc--------------cc-------c---ccccc------ccCCceEEE
Confidence 44555554 66789999999999988654311 00 0 02111 558999999
Q ss_pred Ee-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEEcCC--ceeeeeeccccCCeeEE
Q 001386 816 AS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS--SEVISKLEGHSKRVTGL 888 (1088)
Q Consensus 816 ~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~----d~~~lasg~~dg~i~lwd~~~--~~~~~~l~~h~~~V~~l 888 (1088)
++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-.= .+.-..+..-.|+|.++
T Consensus 89 CS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i 166 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSI 166 (846)
T ss_pred ecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEE
Confidence 98 8999999998888777665 5578999999993 256888999998 77775321 11112455567899999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 001386 889 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 961 (1088)
Q Consensus 889 ~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~ 961 (1088)
.|. |.++|-++.+| |++||+.+++..... +.+...........++.|.++. .|+.|...+|++..++
T Consensus 167 ~W~--g~lIAWand~G-v~vyd~~~~~~l~~i--~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 167 KWR--GNLIAWANDDG-VKVYDTPTRQRLTNI--PPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK 233 (846)
T ss_pred Eec--CcEEEEecCCC-cEEEeccccceeecc--CCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence 995 88999888888 899999986543321 1111111111233466776654 4667777788888877
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00078 Score=76.43 Aligned_cols=203 Identities=12% Similarity=0.132 Sum_probs=130.5
Q ss_pred eecCCCCeEEEEEcccCcEEEEecCCCcce-eeeceeeeeeccccccceeeeecCCCCC-eEEEEECCCCCEEEEEeCCC
Q 001386 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 341 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~l~~s~dg~~las~~~dg 418 (1088)
+|++.+. .+|.|+.+|.|.+.+ ++..+ +. +..+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln--~s~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILN--SSFQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDE 87 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEec--ccceeeeh-------------------heecchhhhhHhhcccCceEEEEEeecC
Confidence 4667777 689999999887776 32222 21 3334444 44444444446777776554
Q ss_pred -----EEEEEEccCCC------cccceeEecc-----CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe--CC--CCcee
Q 001386 419 -----IVQLYAYHGGS------DARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--AV--TGSRT 478 (1088)
Q Consensus 419 -----~i~vwd~~~~~------~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd--~~--~~~~~ 478 (1088)
.++||+++.-+ ++... .+.. ...++.+++.+.+-+ .+|.|-.+|.|..+. +. .|...
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~-ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~ 164 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEH-RIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQ 164 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeee-eeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccce
Confidence 59999997432 12111 1112 356789999999977 789999999998874 22 22222
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
.-......+|+.+++.. ++..++.......|.+|.+..... ...+..++....|.+|++....+++++ ...+
T Consensus 165 ~~~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l 237 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFL 237 (933)
T ss_pred eeeccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceE
Confidence 22233567999999854 445544455567899999986553 334777888899999988777566665 3459
Q ss_pred EEEeCCCCceeEEEe-ccc
Q 001386 558 VEWNESEGAIKRTYQ-GLQ 575 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~-~~~ 575 (1088)
+.|+......-..+. |+.
T Consensus 238 ~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 238 YFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEEcCCCcceeeeecCCCe
Confidence 999988666655555 444
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0022 Score=70.49 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=82.5
Q ss_pred eEEEEEcC-CCCEEEEE-----eCC----eEEEEEcCccee--eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 935 ETHIQFHK-DQTRFLLV-----HET----HLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 935 v~~~~fs~-dg~~l~~~-----~d~----~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
..++.||- +...+.+. .+| .-.+|++...+. +..........|.+++++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46778876 34444441 233 256777765543 3333345588999999999999999999999999999
Q ss_pred cCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1003 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
..++.....- ..+.|..++||| +|..+++|+.-|.+.+||+.-+.
T Consensus 288 ~~~~~t~~~k------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 288 TTRGVTLLAK------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCCeeeeee------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9888543221 124567799999 89999999999999999995444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0054 Score=69.98 Aligned_cols=252 Identities=14% Similarity=0.088 Sum_probs=139.1
Q ss_pred CceeeeecCCCCeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+...++||||++++.+-+..| +++|.|+.+|+.+... +.. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~------------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG------------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE------------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc------------------ccc--cccceEEEeCCCCEE
Confidence 4446789999996555545444 5999999999766421 111 112239999999888
Q ss_pred EEEeCCC-----------EEEEEEccCCCcccceeEeccCCCC--EEEEEecCCCCcEEEEEEeCC--CcEEEEeCCCC-
Q 001386 412 GVAYSKH-----------IVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 475 (1088)
Q Consensus 412 as~~~dg-----------~i~vwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~l~l~s~s~d--~~i~vwd~~~~- 475 (1088)
.....+. .|+.|.+.++..-. ...+...... ...+..++|++.+++.+.+.. ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7664332 37788887664321 1234343333 678899999996433333322 35778888775
Q ss_pred ---ceeEEeccCCccEEEEeeeeeCCceEEEEE---ecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccCCCEEEE
Q 001386 476 ---SRTYSFEGHGAPVYSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFS 546 (1088)
Q Consensus 476 ---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~ 546 (1088)
.....+......+....-+. ++.+++.. ...+.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23334433333333322221 33344433 2345677778777663 2244444443333444455666666
Q ss_pred EeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE--e--CCCcEEEEEcCCCeee
Q 001386 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--G--DDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s--~dg~i~iwd~~~~~~~ 613 (1088)
... .++...|++++...+.....+.... .+.|..+...++++.+... | .-+++..||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 554 3457789999998455555555443 3556666666666655442 2 3467888888887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.001 Score=77.20 Aligned_cols=222 Identities=14% Similarity=0.099 Sum_probs=120.3
Q ss_pred CCeEEEEEcCCCCcEEEEEe------CCC--eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCC-CcEEEEE
Q 001386 840 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 910 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~------~dg--~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~D-g~i~iwd 910 (1088)
..+...++|| +++.+|... .|. .+.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 677666554 243 55555642 3332223332 37889999999988887543 2233332
Q ss_pred cCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEE---EEcCccee-e---eeeecCCCcCEEEEEEe
Q 001386 911 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPISSVPISQATFS 983 (1088)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~v---wd~~~~~~-~---~~~~~~h~~~v~~l~fs 983 (1088)
-..........+............|..+.|||||..+|...+++|++ -....|+. + ..+..+-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21111000000000000001123699999999999999977788887 55555641 1 11122223446889999
Q ss_pred eCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 001386 984 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1063 (1088)
Q Consensus 984 ~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~ 1063 (1088)
.++.++ ++..++...+|.+.-.-......+...+. -...+++-.| ..++++..+|.+.+=.-......|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-------~~v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-------APVVAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-------CceEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999855 55555555566543332111111111111 1124566665 356666777744443334456789
Q ss_pred cccCCCCccCCCC
Q 001386 1064 AVLPPDEIVGDQP 1076 (1088)
Q Consensus 1064 ~~~~~~~~~~~~~ 1076 (1088)
..-+......+.|
T Consensus 575 ~ev~~l~g~~~~p 587 (591)
T PRK13616 575 REVPGLMGPRAAP 587 (591)
T ss_pred eECccccCCCccc
Confidence 8888777665544
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.3e-06 Score=64.76 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=43.0
Q ss_pred hHHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhhhhhhcCCCH
Q 001386 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1088)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~ 90 (1088)
++..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 478899999999999999999887443222223 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.8e-06 Score=49.94 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHhc
Q 001386 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1088)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1088)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00047 Score=76.57 Aligned_cols=197 Identities=19% Similarity=0.147 Sum_probs=119.5
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEccc---CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 400 (1088)
....+.+..-...+..-+|+|+++.+....-.. ..+.++|+.+++.....+ ..+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 444556666666888889999999654443222 359999999987665322 234445
Q ss_pred EEEECCCCCEEEEEe-CCCE--EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--EEEEeCCCC
Q 001386 401 RVVWSPDGSLLGVAY-SKHI--VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG 475 (1088)
Q Consensus 401 ~l~~s~dg~~las~~-~dg~--i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~--i~vwd~~~~ 475 (1088)
..+|||||++||.+. .||. |.+.|+.++... .+..-.+.-+.=.|+|||+. ++.+.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 578999999998774 4454 777788776522 23333333446789999997 3444555554 556676665
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecC-Ce--EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
... .+....+.-. ...+++||++++..+.. |. |.+.|+.+..... ...........++.++|+.+...+.
T Consensus 317 ~~~-riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 QVT-RLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cee-EeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEEEecc
Confidence 543 2222211111 23336788888877653 44 5566665555322 2222223345578889988887664
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0044 Score=71.64 Aligned_cols=249 Identities=13% Similarity=0.103 Sum_probs=140.3
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--CCCEEEEEe---------CC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SK 417 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--dg~~las~~---------~d 417 (1088)
.+..++.++.|.-+|..+|+.+-.... ..+...-..+.-+| .+..++.++ .+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~-----------------~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~ 174 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGN-----------------NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVR 174 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecC-----------------CCCcCcceEecCCCEEECCEEEEeccccccccCCCC
Confidence 356777889999999999997754221 11100000011111 124444443 36
Q ss_pred CEEEEEEccCCCcccceeEecc----------------CC-CCE-EEEEecCCCCcEEEEEEeCCC--------------
Q 001386 418 HIVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK-------------- 465 (1088)
Q Consensus 418 g~i~vwd~~~~~~~~~~~~~~~----------------h~-~~v-~~~~~s~d~~~l~l~s~s~d~-------------- 465 (1088)
+.+.-.|..+|+.+-....... +. ..| ...++.+.+. .++.++.++
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCC
Confidence 7888889998876543211100 00 011 1234444445 455565454
Q ss_pred ----cEEEEeCCCCceeEEeccCCccEE------EEeeee--eCCc---eEEEEEecCCeEEEEECCCCCceEEecCCCC
Q 001386 466 ----TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGL 530 (1088)
Q Consensus 466 ----~i~vwd~~~~~~~~~~~~~~~~v~------~~~~~~--~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 530 (1088)
.|.-.|+.+|+.+..+..-..... ...+.. .-++ ..++.++.+|.+...|.++++.+.......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~- 331 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE- 331 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence 799999999999877642111110 001100 0122 267888899999999999998877654321
Q ss_pred ceEEEEEccCCCEEEEEeeC--------------CCCceeEEEEeCCCCceeEEEecccccc-----ccEEEEEEeCCCC
Q 001386 531 GCTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKD 591 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~ 591 (1088)
..++.+| ..++..... ....+.+.-.|..+|+.+-......... .....-.....+.
T Consensus 332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~ 407 (488)
T cd00216 332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN 407 (488)
T ss_pred --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence 1233444 333332210 1225678889999998776665431000 0111111122467
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
.+++++.||.|+.+|..+|+.+...+....
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 888999999999999999999999876543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0033 Score=63.96 Aligned_cols=215 Identities=12% Similarity=0.116 Sum_probs=115.4
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-cCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 834 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 834 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
.+.+-...+..++|.|+++.++++....+.|..++.. |+.+.++.-. .+..-.|++..++.++++.-.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555566799999999667788889999999999974 7877766433 3568899999888887776678999999994
Q ss_pred CCc--eeee--eeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEcCc---ceeeee-e------ecCCCcCE
Q 001386 913 GWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEE---LTCLKQ-W------FPISSVPI 977 (1088)
Q Consensus 913 ~~~--~~~~--~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~-~i~vwd~~~---~~~~~~-~------~~~h~~~v 977 (1088)
... .... ..+..... ......+-.++|++.++.|.++.++ -..+|.+.. ...+.. . .......+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 422 1111 11121111 1122368999999988777776443 345555543 111111 0 11124567
Q ss_pred EEEEEeeCC-CEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001386 978 SQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 978 ~~l~fs~dg-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
.++++.|.. .+++.......|.++| ..|+.+..+........- ...--.+-.|+|+| +|++.++. .-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-~~~~~QpEGIa~d~-~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-SKDIPQPEGIAFDP-DGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-ccccCCccEEEECC-CCCEEEEc-CCceEEEe
Confidence 889998855 4556666778888899 778777665533311100 00111245699999 77765544 55555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00063 Score=74.59 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=82.3
Q ss_pred CCCeeEEEEec-CCCEEEEEe-----CCc----EEEEEcCCceeEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001386 798 QEAVPCFALSK-NDAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI 864 (1088)
Q Consensus 798 ~~~v~~~~~s~-dg~~l~~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~i 864 (1088)
+....++.||. +...+.+.. +|. -.+|++...+..+. --.....+.+++++| +...++.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 34456777776 333343331 332 46777765543221 124667899999999 88999999999999
Q ss_pred EEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 865 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.+||...+... +..+.-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998876332 2234456788999999999999999999999998753
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0034 Score=63.88 Aligned_cols=197 Identities=9% Similarity=0.086 Sum_probs=113.3
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+.|.+-.+++..++|.|+...|+|+....+.|...+. +|+.++..+ +.+ -+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 4566777789999999998779999999999998886 577776533 333 356888999888
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccce---e--Eec---cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC---Cc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQ---L--EID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 476 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~---~--~~~---~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~---~~ 476 (1088)
+.++++.-.++.+.+.++......... . .+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 888877667899999998543211111 1 111 24456899999999884 44455555556665443 22
Q ss_pred eeEEe--------ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC---------CceEEEEEcc
Q 001386 477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 539 (1088)
Q Consensus 477 ~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~ 539 (1088)
.+... ......+.++++++. .+++++.......|..+| ..++.+..+.... .....|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 22111 123455788888765 567888888889999998 4444433332222 2467899999
Q ss_pred CCCEEEEE
Q 001386 540 NGRRLFSC 547 (1088)
Q Consensus 540 ~g~~l~~~ 547 (1088)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0026 Score=70.01 Aligned_cols=282 Identities=13% Similarity=0.152 Sum_probs=146.4
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
.|+.+.|+++..-++++...|.|.+|.+..++...... ...-....+.+ +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~------------------------~~~~~~~~~~~-----~~ 53 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE------------------------QPPDLDYNFRR-----FS 53 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------------------------------S-------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC------------------------CCcccCccccc-----cc
Confidence 57889999998889999999999999987654311000 00000000000 00
Q ss_pred EeCCcEEEEEcCC---------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee--ecc----
Q 001386 816 ASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG---- 880 (1088)
Q Consensus 816 ~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~--l~~---- 880 (1088)
..++.-.+-|+.. ......+....+.|++++.|. =-++|+|..+|.+.|.|++....+.. +..
T Consensus 54 ~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~ 131 (395)
T PF08596_consen 54 LNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLS 131 (395)
T ss_dssp GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-
T ss_pred ccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccc
Confidence 0001111122211 122333444578999999984 45999999999999999988776644 222
Q ss_pred --ccCCeeEEEEC-----CCC---CEEEEEeCCCcEEEEEcCC-C-ceeeeeeeecCCCCccCCCCeEEEE-EcCC----
Q 001386 881 --HSKRVTGLVFS-----DAL---NILVSSGGDAQIFVWDVDG-W-GIQTCRSLQTPDGVMTLAPSETHIQ-FHKD---- 943 (1088)
Q Consensus 881 --h~~~V~~l~~s-----~dg---~~las~s~Dg~i~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~-fs~d---- 943 (1088)
....|+++.|+ .|+ -.|++|...|.+.+|.+.- . ..-..........+. ..|..+. |+.+
T Consensus 132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~~G~~ 208 (395)
T PF08596_consen 132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINADTGES 208 (395)
T ss_dssp SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETTT--B
T ss_pred cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECCCCCc
Confidence 23468888886 233 4588889999999998862 1 111111111111111 2344443 4322
Q ss_pred -----------------CCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEe-----eCCCEEEEEeCCCcEEEE
Q 001386 944 -----------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGTLSIH 1001 (1088)
Q Consensus 944 -----------------g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-----~dg~~l~s~s~dg~v~vw 1001 (1088)
..+++++++..++++...+.+...... ........+++- ..+..|++-..+|.|+++
T Consensus 209 a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 209 ALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp -B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred ccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 135666889999999999888776655 222333344452 356778888999999999
Q ss_pred EcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1002 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1002 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
.+...+.+........ .....+. ..++++ +|+.++-. ...++.++.+....
T Consensus 288 SLP~Lkei~~~~l~~~----~d~~~~~--~ssis~-~Gdi~~~~-gpsE~~l~sv~~~~ 338 (395)
T PF08596_consen 288 SLPSLKEIKSVSLPPP----LDSRRLS--SSSISR-NGDIFYWT-GPSEIQLFSVWGEG 338 (395)
T ss_dssp ETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE--SSSEEEEEEEES--
T ss_pred ECCCchHhhcccCCCc----ccccccc--ccEECC-CCCEEEEe-CcccEEEEEEEccC
Confidence 9999999988764321 1111222 245576 67755544 45566666665544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.012 Score=62.82 Aligned_cols=287 Identities=12% Similarity=0.028 Sum_probs=135.1
Q ss_pred EEEecCCceEEEecc-ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-
Q 001386 740 LTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS- 817 (1088)
Q Consensus 740 ~~~s~~g~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 817 (1088)
-+|.++|+.|+.++. +|.-.+|-++ +.++...+....+ . .......++|+.+.++...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lD----------------L~t~~i~QLTdg~---g-~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLD----------------LATGEITQLTDGP---G-DNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEE----------------TTT-EEEE---SS-----B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEE----------------cccCEEEECccCC---C-CCccceEEecCCCeEEEEEC
Confidence 367889977665554 6666665443 3333322211111 1 1122456778888876654
Q ss_pred CCcEEEEEcCCceeEEEecCCCCCeEEEEEc-CCCCcEEEEEeC----------------------CCeEEEEEcCCcee
Q 001386 818 GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PHDNNVIAIGMD----------------------DSTILIYNARSSEV 874 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~~~lasg~~----------------------dg~i~lwd~~~~~~ 874 (1088)
+..|+-.|+.+.+....+..+...+....|. ..|+..++-.-. ...|.--|+.+|+.
T Consensus 101 ~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 6689999999988777777666666555553 225555443211 23566678888876
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeC----CC-cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGG----DA-QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~----Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
...+. -..-+..+.|||...-++.-+. |. .-|||-+++.......+.+... ...+.+=-|+|||..|..
T Consensus 181 ~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 181 KVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-EEE
T ss_pred eEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCEEEE
Confidence 54444 4455778999996555444332 23 1377877654322222222211 235778899999998886
Q ss_pred -Ee-----CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC----------------cEEEEEcCCCc
Q 001386 950 -VH-----ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG----------------TLSIHEASNLE 1007 (1088)
Q Consensus 950 -~~-----d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg----------------~v~vwd~~~~~ 1007 (1088)
+. +..|.-+|..+++...... ......+--++||++++-=+.|. -|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~---~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLME---MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEE---E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEe---CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 31 3357888888886543211 22455666688999877544442 45667887776
Q ss_pred eEEEecc-ccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1008 VQCRILS-TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1008 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
...-..- ..|.....+..... ....|+|++...|+++...|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~h-Php~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTH-PHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT-----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCC-CCCccCCCCCEEEEECCCCCCccEEEE
Confidence 5422220 11111110011111 237899944345556666676555543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0012 Score=73.51 Aligned_cols=119 Identities=11% Similarity=0.070 Sum_probs=89.1
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCc-ceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
+.--+++..+++++.|++.|.+++|+-..+.......+.... +....+ +++..+++.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v----------------------s~~e~lvAa 93 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV----------------------SSVEYLVAA 93 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe----------------------cchhHhhhh
Confidence 445566778899999999999999998887554433322333 333333 356677788
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
|+..+.|.++.+....+.....+.--+..|...|++++|++++..+++|.+.|.|.+-.++.
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 88888888888777666655555555555889999999999999999999999999887765
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.7e-05 Score=52.80 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhhhcCcHHHHHHHHHhcCCC
Q 001386 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1088)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1088)
.++++.++|+|||...||.+||++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.057 Score=62.71 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=42.9
Q ss_pred CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc
Q 001386 819 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 881 (1088)
Q Consensus 819 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h 881 (1088)
|.|.-+|+.+++.............+.... .+.+++.++.+|.++.+|.++|+.+..++-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457888888988887765333222222222 3447777888999999999999999877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.012 Score=65.97 Aligned_cols=198 Identities=17% Similarity=0.165 Sum_probs=110.2
Q ss_pred EEEecCCCEEEEEeCC------------cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 804 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
++.+|.|..+|...+. .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 5667777777776544 58999876 566666554448999999997 54 455667899999999863
Q ss_pred ce------eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-eeeee-ecCCCCccC--CCCeEE-EEE
Q 001386 872 SE------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSL-QTPDGVMTL--APSETH-IQF 940 (1088)
Q Consensus 872 ~~------~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~-~~~~~-~~~~~~~~~--~~~v~~-~~f 940 (1088)
.. .+....-....+....+..+|-.+. ..++.+.+ +...... ..+.+ ..+...... ...... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~--v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYV--VNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEE--EeCccccchhhccccCCCcccccccccccccceEe
Confidence 22 1111111222233333444552233 33443333 3322111 00111 111100000 000111 345
Q ss_pred cCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 941 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 941 s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
+.+....+. ..++.+.+.+....+. . ...+++..+++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 555555444 4555666444332211 1 124689999999999999999999999999877777776665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.009 Score=66.53 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=146.7
Q ss_pred CeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEEcCCcee
Q 001386 800 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEV 874 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~i~lwd~~~~~~ 874 (1088)
....+++++++..+.... ++.|.+.|..+.+........ .....++++| +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345678888888665554 688999998877766665422 2667899999 5655555444 68999999999988
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--e
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 951 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~ 951 (1088)
+.....-..+ ..++++|+|..+..+. .++.|.+.|..+..... . ..............++++|||.++.+. .
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccccCCCCceEEECCCCCEEEEEecc
Confidence 8775544444 8899999999766554 78999999977643221 1 100001111235689999999977763 2
Q ss_pred C--CeEEEEEcCcceeeeeeec-CCCcCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCceEEEeccc
Q 001386 952 E--THLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 952 d--~~i~vwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
+ +.+...|..++........ +-. ....+.++|+|+++.+... .+.+.+-|..+......+...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 2 5899999998887776222 222 5667899999999888744 489999999998887766533
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0022 Score=71.27 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=109.2
Q ss_pred EEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe---CC-CeEEEEEcCCceee--eeeccccCCeeEEEECCCC
Q 001386 821 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVI--SKLEGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 821 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---~d-g~i~lwd~~~~~~~--~~l~~h~~~V~~l~~s~dg 894 (1088)
+.+-|.. +.....+......+..-+|+| +++.++... .. ..++++++.+++.. ..+.++. ..-+|||||
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG 249 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDG 249 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCC
Confidence 4444544 555556665566777788999 666655432 22 36999999987643 3344444 457899999
Q ss_pred CEEEEEe-CCCc--EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC--C--eEEEEEcCcceeee
Q 001386 895 NILVSSG-GDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T--HLAIYEAEELTCLK 967 (1088)
Q Consensus 895 ~~las~s-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d--~--~i~vwd~~~~~~~~ 967 (1088)
+.|+.+. .||. |.+.|+.++... .+....+. -..-.|+|||+.++-.+| | .|.+++...+...+
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcce---ecccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 9987654 5665 555666664411 12222222 236789999999998655 3 48888888776543
Q ss_pred eeecCCCcCEEEEEEeeCCCEEEEEeCC-Cc--EEEEEcCCCce
Q 001386 968 QWFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1008 (1088)
Q Consensus 968 ~~~~~h~~~v~~l~fs~dg~~l~s~s~d-g~--v~vwd~~~~~~ 1008 (1088)
....+ +.-....+||||++++..+.. |. |.+.++.++.-
T Consensus 321 iT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 321 LTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 32322 222277899999999877743 44 67777777664
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0082 Score=66.16 Aligned_cols=255 Identities=14% Similarity=0.138 Sum_probs=133.9
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCccee------e------------eceeeeeeccccc------cceeee
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------I------------RNFKVWDIGACSM------LFKTAL 391 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~------~------------~~~~~~d~~~~~~------~~~~~~ 391 (1088)
.|+.+.|+++-.. ||+|...|.|.||.+...+.-. . .+-.+-|+..... ..+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6889999998764 7889999999999886442221 0 0112334432111 123345
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEecc------CCCCEEEEEec---CCCC---cEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS---APCK---QISVI 459 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~------h~~~v~~~~~s---~d~~---~l~l~ 459 (1088)
+....++|++++.| |=.++|+|+.+|.+.|.|+.....+.. ..+.. ....|+++.|+ .++. .+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 667999999999999999977654432 12333 33468888886 2222 24788
Q ss_pred EEeCCCcEEEEeCC--C-Ccee----EEeccCCccEEEEeeeeeCCc-------------------eEEEEEecCCeEEE
Q 001386 460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 513 (1088)
Q Consensus 460 s~s~d~~i~vwd~~--~-~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 513 (1088)
+|...|.+.+|.+. . +... .....+.++|..+......+| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2222 122246677766654311111 22445556788999
Q ss_pred EECCCCCceEEecCCCCceEEEEEc-----cCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc-cccccEEEEEEe
Q 001386 514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFD 587 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~ 587 (1088)
+...+.+...........+..+++- ..+..|++... ++.++++.+..-+.+....... .....+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776655544332344445553 24555555543 5569999998887777766532 011223445566
Q ss_pred CCCCEEEEEe
Q 001386 588 TAKDQILAAG 597 (1088)
Q Consensus 588 ~~~~~l~~~s 597 (1088)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666554443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0084 Score=67.01 Aligned_cols=223 Identities=10% Similarity=0.071 Sum_probs=116.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+......+..+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33455668889999999999994 6777777773321 21 1123455788998665 56666688899963
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
--+.+....+.. ...+..+-. |.+|...+ ++.|.+||+.+.+.+..+... +|..+.|+++|.+++..+.
T Consensus 96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcC-CcccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 223333233331 123333321 45555554 448999999999888877755 3889999999999999873
Q ss_pred CCceeEEEEeCCCC-----------ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe--eeEEEeC
Q 001386 552 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDA 618 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~ 618 (1088)
..+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++-+ -.|+ .+..+.
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-
Confidence 23666654322 0222222212 46888888766 44444444 66653 3333 233332
Q ss_pred CCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
.++.-+.+.++.+.+.....++.+..+.+..
T Consensus 233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 1356677778777888888888888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.015 Score=64.98 Aligned_cols=219 Identities=16% Similarity=0.164 Sum_probs=118.8
Q ss_pred CCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 798 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
...+..+.++|+|++++++++|...|+.....+.... +....++|.+ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3457789999999999999999999998554444322 3345688988 565 55566688899963323333223
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 957 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~v 957 (1088)
+... ..+..|.. |.+|...+.+ .|.+||+.+++ .+....-. .|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 23444443 8888877665 79999999854 33333221 368999999999999988888888
Q ss_pred EEcCcc-----------eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE--EEeccccccCCCCcc
Q 001386 958 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ--CRILSTAYLRPTTSC 1024 (1088)
Q Consensus 958 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~~~~~~~ 1024 (1088)
++.... ..+.... .-...|.+.+|-.| .++-.+.. .++. +.+|+.- +.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred EEecchhcccccccCchhceEEEE-EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-----------
Confidence 886644 0111111 11567888888776 33333333 6665 5555532 2221
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1025 ~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
..++. +.+.| ..+.+.....|+.|..+.+..
T Consensus 233 ~~~yl--lgy~~-~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYL--LGYLP-KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EE--EEEET-TTTEEEEE-TT--EEEEE--H
T ss_pred CceEE--EEEEc-cCCEEEEEECCCCEEEEEECH
Confidence 11333 44555 347788888999999888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.028 Score=55.82 Aligned_cols=254 Identities=17% Similarity=0.162 Sum_probs=142.6
Q ss_pred EEEEEEeCCCCE-EEEEeCCCc-EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC-----CcEEEEeCCC
Q 001386 581 VSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPE 653 (1088)
Q Consensus 581 v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~ 653 (1088)
-..++|+|.... ++.+-.-|+ ..++|..+.+...++........--.-+|||||.+|...-.| |.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 345677776543 344555554 567899888877777654333223346799999998876544 6788888774
Q ss_pred CC-cccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcc
Q 001386 654 SN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732 (1088)
Q Consensus 654 ~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 732 (1088)
+- .+..+..
T Consensus 150 ~fqrvgE~~t---------------------------------------------------------------------- 159 (366)
T COG3490 150 GFQRVGEFST---------------------------------------------------------------------- 159 (366)
T ss_pred ccceeccccc----------------------------------------------------------------------
Confidence 31 1111111
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEE-EccCCCCCC-CCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTL-STEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
|.-....+.+.+||+.++.+.. -|... ++...+... +.+.+.-+.+..+|..+....++...+...|+.++..+||
T Consensus 160 ~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC
Confidence 2223345667777776654432 23322 222222111 1223344556667776666666655577889999999999
Q ss_pred CEEEEEe-CCc-----EEEEEcCCceeEEEecCC-------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 811 AYLFSAS-GGV-----ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 811 ~~l~~~~-dg~-----i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
..++.+. .|. --+=-...++.+.-+... ...|-+++....++-..++.-..+...+||..+|.++..
T Consensus 238 tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 238 TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 9887764 211 111112233443333322 245778888874555555555666888999999987654
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
-.- ..+..++- ...-++..+.+|.+.++.
T Consensus 318 a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 318 AAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ccc--ccccccee--ccCceEEecCCceEEecc
Confidence 321 11222332 233355556677777763
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.039 Score=62.94 Aligned_cols=247 Identities=13% Similarity=0.111 Sum_probs=126.8
Q ss_pred CeEEEEECCCCCEEEEE-eCCC----EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-C--------
Q 001386 398 SVNRVVWSPDGSLLGVA-YSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-D-------- 463 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~-~~dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~-------- 463 (1088)
.+...++||||+++|.+ +..| .++++|+++|+.+... +... ....+.|.+|++. ++.+.. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44468899999999976 3333 5999999999654321 2211 1123999999985 233332 2
Q ss_pred -CCcEEEEeCCCCcee--EEeccCCcc--EEEEeeeeeCCceEEEEEecC----CeEEEEECCCC----CceEEecCCCC
Q 001386 464 -DKTIKVWDAVTGSRT--YSFEGHGAP--VYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL----GARVDYDAPGL 530 (1088)
Q Consensus 464 -d~~i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~~~ 530 (1088)
...|+.|.+.++..- ..+...... ...+.. +.++++++..+.. ..+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 224788888776433 344444333 334444 6677776654433 23677777764 22333333333
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce---eEEEeccccccccEEEEEEeCCCCEEEEE-eCCC--cEEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIKI 604 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg--~i~i 604 (1088)
.+....-.. +..++..+..+...+.|...++..... ...+..+. ....+..+. ..+++|+.. ..++ .|++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVS--LFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEE--EETTEEEEEEEETTEEEEEE
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEE--EECCEEEEEEEECCccEEEE
Confidence 333222222 444443333444567788888877652 22444333 011344444 345555553 3343 5888
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC----CCcEEEEeCCCCCc
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 656 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~~ 656 (1088)
+++..+.....+..... ..|..+...+++..+..... -+++..||+.+++.
T Consensus 354 ~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 99984555555554332 12344444455544433222 25677788887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0035 Score=72.95 Aligned_cols=187 Identities=10% Similarity=0.077 Sum_probs=106.3
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 001386 799 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 861 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-------- 861 (1088)
..+.+.++||||+.+|... +. .|.+++.. +.. ..+.. ....+.-.|+| ||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999887764 33 35555542 222 33322 22478899999 77766665432
Q ss_pred ----CeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCccCCCC
Q 001386 862 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 862 ----g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
+.+.+.++..++... ...+.|..+.|||||..+|... +|.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234444444443322 2356799999999999988776 477777 443444322211111111111 13
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEEcCc-ceeeeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEE
Q 001386 935 ETHIQFHKDQTRFLLVHETHLAIYEAEE-LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 999 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~d~~i~vwd~~~-~~~~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~ 999 (1088)
+.++.|..++.+++...++...+|.+.- |..... ..+ ...++.+++-+++ .++.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 5789999999976554444344454432 222221 222 2566777777753 455556666333
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.017 Score=57.41 Aligned_cols=231 Identities=15% Similarity=0.072 Sum_probs=136.1
Q ss_pred EEEEecCC-CEEEEEe-CCc-EEEEEcCCceeEEEecCCCCC--eEEEEEcCCCCcEEEEEeCC-----CeEEEEEcCCc
Q 001386 803 CFALSKND-AYLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 872 (1088)
Q Consensus 803 ~~~~s~dg-~~l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~d-----g~i~lwd~~~~ 872 (1088)
.++++|-- .-++.+. -|+ ..++|....+...++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 46777743 3445554 344 788999888777665533322 22347999 88888765433 68999999864
Q ss_pred -eeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEE--------------------EcCCCceeeeeeeecCCCCccC
Q 001386 873 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW--------------------DVDGWGIQTCRSLQTPDGVMTL 931 (1088)
Q Consensus 873 -~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iw--------------------d~~~~~~~~~~~~~~~~~~~~~ 931 (1088)
+.+.++..|.-....+.|.+||+.|+.+. |-|..- |-.+|.......+.....+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 56778888887888899999999998764 334333 2222221111111100111
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCC-----eEEEEEcCcceeeeeeecC------CCcCEEEEEEeeCCCEEEEEe-CCCcE
Q 001386 932 APSETHIQFHKDQTRFLLV-HET-----HLAIYEAEELTCLKQWFPI------SSVPISQATFSCDCRMVFTSF-VDGTL 998 (1088)
Q Consensus 932 ~~~v~~~~fs~dg~~l~~~-~d~-----~i~vwd~~~~~~~~~~~~~------h~~~v~~l~fs~dg~~l~s~s-~dg~v 998 (1088)
..|.+++..+||+.++.+ ..| -..|=-...|+.+.-+... -...|-+++..-+..+++..+ .-+..
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 358899999999887764 111 1111112223322221111 145667777776556655554 45567
Q ss_pred EEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 999 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 999 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
.+||..+|.++........ .+ ++- ...-|++.+.+|.+.+++
T Consensus 305 vi~da~tG~vv~~a~l~da--aG----------va~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEAALPDA--AG----------VAA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEeccccccc--cc----------cee---ccCceEEecCCceEEecc
Confidence 8899999998765442211 11 222 234577788899999883
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.035 Score=59.20 Aligned_cols=234 Identities=10% Similarity=0.130 Sum_probs=133.9
Q ss_pred cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEE
Q 001386 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 823 (1088)
Q Consensus 744 ~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~i 823 (1088)
..++.|+.|+.+| +.++++..... . ... .....|..+.+.++-+.+++-+|+.+.+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~----------------~-~~i------~~~~~I~ql~vl~~~~~llvLsd~~l~~ 60 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK----------------P-TRI------LKLSSITQLSVLPELNLLLVLSDGQLYV 60 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc----------------c-eeE------eecceEEEEEEecccCEEEEEcCCccEE
Confidence 3567788888888 88887621110 0 000 1334499999999999999889999999
Q ss_pred EEcCCceeEEEe--------------cCCCCCeEEEE--EcCCCCcEEEEEeCCCeEEEEEcCCc-----eeeeeecccc
Q 001386 824 YIVMTFKTILTI--------------MPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHS 882 (1088)
Q Consensus 824 wd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~lasg~~dg~i~lwd~~~~-----~~~~~l~~h~ 882 (1088)
+++......... ......+...+ -...+..+|+++. ...|.+|..... +....+. -.
T Consensus 61 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 61 YDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cC
Confidence 998765444311 11222344444 1222445555554 448888887653 3445554 34
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC----CCccCCCCeEEEEEcCCCCEEEEEeCCeEEEE
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD----GVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 958 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vw 958 (1088)
..+.+++|. ++.++.+..++ ..+.|+.++............ .......++..+.. +++.+|++ .+..-...
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv 213 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFV 213 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEE
Confidence 678999998 55677776655 789999976533221111110 00000012333333 34555554 34433344
Q ss_pred EcCcceeee-eeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 959 EAEELTCLK-QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 959 d~~~~~~~~-~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
|. .|+..+ .... =...+.++++. ..||+..+. +.|.||++.+|+++..+.
T Consensus 214 ~~-~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 214 NK-NGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred cC-CCCcCcccEEE-cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 43 454433 1111 13455666664 447776554 569999999999987776
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.22 Score=56.00 Aligned_cols=135 Identities=17% Similarity=0.250 Sum_probs=78.0
Q ss_pred EEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-c
Q 001386 805 ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-S 882 (1088)
Q Consensus 805 ~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h-~ 882 (1088)
.++.+....+... ++.+.+.+-...+. +. ..+++..+++|| +++++|.-..+|.+.+.+..-.+.+..+.-. .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3444554444443 55566444333211 22 346899999999 8999999999999999987666666555533 3
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
.....+.|.-++..++.- ...|.+..... ..+.|.-++..++...-..++|..-..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455667775443333322 22333333221 134555555555555444478877666
Q ss_pred ceeeee
Q 001386 963 LTCLKQ 968 (1088)
Q Consensus 963 ~~~~~~ 968 (1088)
-+.+..
T Consensus 316 ~~~l~~ 321 (410)
T PF04841_consen 316 HEFLQR 321 (410)
T ss_pred eEEEEE
Confidence 666555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=3.8e-05 Score=83.51 Aligned_cols=203 Identities=12% Similarity=0.174 Sum_probs=126.8
Q ss_pred CCCceeeeecCCCC-eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEE
Q 001386 334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1088)
Q Consensus 334 ~~~V~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l 411 (1088)
+..+.|++.+-+.. -++++|..+|.|-+-.+....-. ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 34788888765433 58999999999998877543211 1122556888999999999 78888
Q ss_pred EEEe----CCCEEEEEEccCC--CcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEecc
Q 001386 412 GVAY----SKHIVQLYAYHGG--SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEG 483 (1088)
Q Consensus 412 as~~----~dg~i~vwd~~~~--~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~-~~~~~~ 483 (1088)
|+|- .|..+.|||+.++ ...... .+. +-.....+++|..+.+ ++.+|...+.+.++|++.... ...+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 8873 3556999999987 221111 122 2334566889987777 788888888999999873221 1111
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEE-CCCCCceEE-ecCCC----CceEEEEEccCCCE-EEEEeeCCCCcee
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVD-YDAPG----LGCTRMAYSANGRR-LFSCGTSKEGESF 556 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~-~~~~~----~~v~~~~~s~~g~~-l~~~~~~~~~~~~ 556 (1088)
.+..+..+.+.|- .+.++++-. ||.|.+|| ...-+.... +.... ..+..++|.|-..- +++... ..++
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT 268 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence 2223334444331 223555544 99999999 433332221 11111 24788999996543 333332 2567
Q ss_pred EEEEeCC
Q 001386 557 LVEWNES 563 (1088)
Q Consensus 557 i~iwd~~ 563 (1088)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8888875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.13 Score=57.42 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=159.6
Q ss_pred CeEEEEECCCCCEEEEEeCCC-EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 398 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~dg-~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
....++..+++..+....... .+..-+..... ... ....-...-..++.++++.. ..+....++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-VTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccce-eee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 455678888886655543222 34444433111 111 11111133457788888886 45555567899999988887
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEec---CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
......... ....+++. ++++.+..+.. ++++.+.|-.+............+ ..++++|+|..++... ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVD--PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEEC--CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 776664332 34455664 45545554444 688888888877776664333334 7899999999888876 34
Q ss_pred ceeEEEEeCCCCceeEEEecc--ccccccEEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
++.|.+.|..+....+ -... .........+.++|+|.++...... +.+...|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 6779999977665553 1100 1011345678899999977775443 58999999988877763222222 34678
Q ss_pred EEecCCCEEEEEeCC-CcEEEEeCCCCCcccccc
Q 001386 629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 661 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~ 661 (1088)
.++|+|+.+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999998888554 889998888776555433
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0069 Score=71.32 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=101.9
Q ss_pred CCcEEEEE-eCCCeEEEEEcCCceeeeeeccccCC-eeEEEECC-----CCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001386 851 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSD-----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 923 (1088)
Q Consensus 851 d~~~lasg-~~dg~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~ 923 (1088)
+.++|+.. .....|+-.|+..|+.+..+..|... |..++-.. +...-..|-.+..+..||..-.. ..++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 45555543 35678999999999999999988754 55543321 12233446667779999987532 11121
Q ss_pred cCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 924 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 924 ~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
............+|++-+.+|...+.+.+|.||+|| +.|....+.+++-+.+|.+|..+.||++|++.+ +..+.++++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 111111112357889999999888888999999999 456666666777789999999999999988554 667777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.036 Score=58.70 Aligned_cols=220 Identities=13% Similarity=0.075 Sum_probs=126.4
Q ss_pred EEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec--
Q 001386 804 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-- 879 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~-- 879 (1088)
..|.++...|+... .+.|.-|+..+++. ..+..+......+.+.. ++ .|+++ .. .+++++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~-~~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIAC-EH-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEE-cc-ccEEEeccCCceeEEeccc
Confidence 35667777666665 78899999886643 23332333333344444 44 44433 23 36777776665532221
Q ss_pred --c-ccCCeeEEEECCCCCEEEEEeC-----C----CcEEEEEcC-CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCE
Q 001386 880 --G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 946 (1088)
Q Consensus 880 --~-h~~~V~~l~~s~dg~~las~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~ 946 (1088)
+ -....+.+...|+|.+.++... . ..=.+|-++ .+. ..+...++.. .-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCE
Confidence 1 1245677888999998886544 1 112455555 222 1222222111 2468999999987
Q ss_pred EEEE--eCCeEEEEEcCc--cee----eeeeecCCCcCEEEEEEeeCCCEEEEEeCCC-cEEEEEcCCCceEEEeccccc
Q 001386 947 FLLV--HETHLAIYEAEE--LTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAY 1017 (1088)
Q Consensus 947 l~~~--~d~~i~vwd~~~--~~~----~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~ 1017 (1088)
|..+ ..+.|.-|++.. +.. .......+.+..-.++...+|.+-+++-.+| .|.+|+-. |+++..+....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~- 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV- 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-
Confidence 7774 447788887652 221 1122223356677788888998876555554 89999988 99988877432
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeC
Q 001386 1018 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1047 (1088)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~ 1047 (1088)
.++.+++|--.+.+.|++.+.
T Consensus 255 ---------~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 255 ---------KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ---------CCCccceEeCCCcCEEEEEec
Confidence 234456665324455444443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.11 Score=55.38 Aligned_cols=228 Identities=14% Similarity=0.070 Sum_probs=129.3
Q ss_pred CCCeEEEEEcccCcEEEEecCCC-cceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Q 001386 345 VQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1088)
Q Consensus 345 dg~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vw 423 (1088)
.++ .|+.|+.+| +.++++... ..... .+...|..+...|+-+.|++-+ |+.+.++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 355 578888888 999998322 22211 1233499999999888777764 4899999
Q ss_pred EccCCCccccee-----------EeccCCCCEEEEE--ecCCCCcEEEEEEeCCCcEEEEeCCCC-----ceeEEeccCC
Q 001386 424 AYHGGSDARQQL-----------EIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 485 (1088)
Q Consensus 424 d~~~~~~~~~~~-----------~~~~h~~~v~~~~--~s~d~~~l~l~s~s~d~~i~vwd~~~~-----~~~~~~~~~~ 485 (1088)
++..-....... ........+...+ =...+.. .++.+. .+.|.+|.+... +..+.+. -.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cC
Confidence 987654332110 0111223444444 1122332 444444 558888877653 3445554 34
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC------------CceEEEEEccCCCEEEEEeeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------------LGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
..+.+++|. +..++.|..+ ...+.|+.++.....+.... .++..+. -+++.+|++...
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~~~---- 208 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCYDN---- 208 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEecc----
Confidence 677888885 2356666644 47778888665544332211 1222222 344566655321
Q ss_pred ceeEEEEeCCCCceeE--EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 554 ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
+-++=-..|+..+ .+.- . ..+..+++. ..++++.+. +.|.||++.++++++.+...
T Consensus 209 ---~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 209 ---IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ---eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 3333334454443 2222 1 344555553 467777766 45999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.46 Score=55.28 Aligned_cols=197 Identities=11% Similarity=0.087 Sum_probs=119.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCC-ccEEE----------EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYS----------LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
.++.++.++.|.-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+.-.|.++++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 46667778889999999999887765321 11111 112 1236778889999999999998887765
Q ss_pred cCCCCc-eEEEEEcc---CCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEeccccc----------------------
Q 001386 526 DAPGLG-CTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ---------------------- 577 (1088)
Q Consensus 526 ~~~~~~-v~~~~~s~---~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 577 (1088)
...... -..+.-+| ++ .++++.... ..++.|+-+|..+|+.+-.+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432111 00111112 34 444443211 12567999999999887665432210
Q ss_pred ------cccE-EEEEEeCCCCEEEEEeCC-----C-----------cEEEEEcCCCeeeEEEeCCCCC-------CCCce
Q 001386 578 ------HNSV-SVVHFDTAKDQILAAGDD-----H-----------VIKIWDMNKVQLLTTIDAGGGL-------PENPR 627 (1088)
Q Consensus 578 ------~~~v-~~~~~~~~~~~l~~~s~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 627 (1088)
...+ ..+++.+....++.+..+ + .|.-.|+++|+....++...+. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 0111 134666666777765522 2 5677888999988877653221 01111
Q ss_pred EEEecCCC---EEEEEeCCCcEEEEeCCCCCccc
Q 001386 628 ICFNKNGT---LLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 628 v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
+.+..+|+ .++.+..+|.+.+.|..+++.+.
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 22334676 78899999999999999997753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00011 Score=80.23 Aligned_cols=202 Identities=12% Similarity=0.108 Sum_probs=129.7
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce--EEecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
+.+++.....+...++.|..+|.|-+-.++..... .....+...+++++|++ |...||+|-.....+..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 34444433444457888888999988877654432 34455666899999988 6778888765556677899999987
Q ss_pred C--ceeE--EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEec-CCCEEE
Q 001386 565 G--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLLA 638 (1088)
Q Consensus 565 ~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 638 (1088)
+ .+.. .+.+. ......+++|-.+.+.+++|.....+.++|++. ......+. +..+..+..+| .+.+++
T Consensus 139 ~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 139 LLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCcee
Confidence 7 2221 12221 124566889998889999999999999999873 11122221 12356788888 777877
Q ss_pred EEeCCCcEEEEeCCCC--Cccccccccc----CcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 639 VIANENRIKILETPES--NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~--~~~~~~~~~~----~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
+-. ||.|.+||..-+ ..+..+.... +.+..+++.|.. .|.+.+..-..++|++
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr--------------------tglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR--------------------TGLLAVLSRDSITIRL 271 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC--------------------cchhhhhccCcceEEE
Confidence 666 899999994321 2233222222 247788888753 3444444445567888
Q ss_pred cccc
Q 001386 713 EKPL 716 (1088)
Q Consensus 713 w~~~ 716 (1088)
+++.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 8743
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.092 Score=55.69 Aligned_cols=223 Identities=15% Similarity=0.100 Sum_probs=134.0
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
.-.|.|+...++.+--..+.|.-|+..+|+... +. +.+.+.++..-.++..|+++ ..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~-~~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIAC-EHG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEE-ccc
Confidence 335778888777777778999999998775432 11 33444555555555555554 333
Q ss_pred EEEEEEccCCCcccceeEec-cC-CCCEEEEEecCCCCcEEEEEEeCC------------CcEEEEeCCCCceeEEeccC
Q 001386 419 IVQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~-~h-~~~v~~~~~s~d~~~l~l~s~s~d------------~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+.+++.+++.....+.... +. ....+.+...|+|. +.+ +... |.++..|. .+..++.+..+
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~ 161 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD 161 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCc
Confidence 6778876665422221111 11 23567788899998 333 3322 22333443 56666666665
Q ss_pred CccEEEEeeeeeCCceEEEEE-ecCCeEEEEECCCC-----Cc--eEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 485 GAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSL-----GA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~-----~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
-..-+.++|+| |++.++.+ +..+.|.-|++... .. ........+..-.++...+|.+-+++... ...
T Consensus 162 ~~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~ 236 (307)
T COG3386 162 LTIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGR 236 (307)
T ss_pred EEecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---Cce
Confidence 56667888855 55555554 44588888877631 11 12222334455567788888877544321 235
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEe
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 597 (1088)
|..|+.. |+.+..+.... ..+.+++|. ++.+.|++.+
T Consensus 237 v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 9999998 99999888875 567777775 4556655544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.99 Score=54.52 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=118.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCcc--------EEEEeeeee--------------CCceEEEEEecCCeEEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 514 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~~--------------~~~~~l~s~~~dg~i~iw 514 (1088)
.++.++.++.|.-.|..+|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666677788888888888888776432211 112222211 133478888899999999
Q ss_pred ECCCCCceEEecCCCC------------ceEEEEEcc--CCCEEEEEeeCCC------CceeEEEEeCCCCceeEEEecc
Q 001386 515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 515 d~~~~~~~~~~~~~~~------------~v~~~~~s~--~g~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
|.++++....+...+. ....+.-+| .+..+++++...+ ..+.|+-+|..+|+.+-.+..-
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998887765532211 000111122 2345555543222 2578999999999988766421
Q ss_pred cc--------------ccccE-EEEEEeCCCCEEEEEe------------------CCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 575 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 575 ~~--------------~~~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
.. ....+ ...++.++...++.+. ..+.|.-.|.++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 00 00111 2344555545544422 124566778888988877764211
Q ss_pred C-------CCCceEEEec-CCC---EEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 622 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+....
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 0 0011122332 553 78899999999999999998776543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=65.88 Aligned_cols=101 Identities=15% Similarity=0.279 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHhcCCCh----------hHHHHHHHhcCccHHHHHHhhccC-ccccCccccchhhh
Q 001386 6 KDLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYF 74 (1088)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1088)
+.+..+|..++...|+.+.+..|-+|+|... ++..+-.+|.+|+-+.|++.+..- ..+.+. ..++-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence 4468999999999999999999999999864 378889999999999999998763 223322 224889
Q ss_pred HHHHhhhhhhhcCCCHH--HHHHHHHhhccccCCCC
Q 001386 75 EIRKQNFFEALDGHDIA--KALNILKKDLKDFAPGN 108 (1088)
Q Consensus 75 ~l~~q~~lEll~~~~~~--~a~~~l~~~l~~~~~~~ 108 (1088)
.|..+.|++++..|... +|+...|+.++|+....
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 99999999999998877 99999999999996443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.1 Score=57.40 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=57.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEE-EcCCC----------------Cc-EEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA-FNPHD----------------NN-VIAI 857 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~-~sp~d----------------~~-~las 857 (1088)
....+.+++.+|++++.|+.+ -|.|.++|+.++..++..++-.+.-..-. ..... .. +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 445688999999999888876 48999999999988888776554321111 10001 11 3445
Q ss_pred EeCCCeEEEEEcCCceeeeeec
Q 001386 858 GMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
+-.-|.|.||++++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887766554
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0021 Score=70.69 Aligned_cols=94 Identities=20% Similarity=0.380 Sum_probs=73.3
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeE-EEEECCCCCEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGV 413 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-~l~~s~dg~~las 413 (1088)
..|..+.|+|.-. ++|.+..+|.|.+..++ -+++.+ +.-|+..++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEEE
Confidence 4789999999988 89999999999998887 444433 333666676 9999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1088)
|-.||+|++-|+++|..+... ...-...|.++-|.+
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998765532 223345677777763
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.036 Score=60.57 Aligned_cols=181 Identities=11% Similarity=0.128 Sum_probs=102.4
Q ss_pred CCEEEEEeC-----------CcEEEEEcCCc----eeEEEe--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001386 810 DAYLFSASG-----------GVISLYIVMTF----KTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 810 g~~l~~~~d-----------g~i~iwd~~~~----~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~ 872 (1088)
..++++|.. |.|.++++... ..+..+ ....++|++++-- +++ |+++. .+.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence 567887741 77999999884 122221 2245788888776 344 44443 578999999887
Q ss_pred e-eeeeecc-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 873 E-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 873 ~-~~~~l~~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
+ .+..-.- ....+.++.. .+.+++.|+....+.++..+..... ...+..-... ..++++.|-+|++.++++
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~-l~~va~d~~~----~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNK-LILVARDYQP----RWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEE
T ss_pred ccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCE-EEEEEecCCC----ccEEEEEEecCCcEEEEE
Confidence 7 4332221 2224555544 4669999998888888866542211 1122211111 258899998776655554
Q ss_pred -eCCeEEEEEcCc-------ce-eeeeeecCC-CcCEEEE---EEee--CCC------EEEEEeCCCcEEEE
Q 001386 951 -HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA---TFSC--DCR------MVFTSFVDGTLSIH 1001 (1088)
Q Consensus 951 -~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~l---~fs~--dg~------~l~s~s~dg~v~vw 1001 (1088)
.+|.+.++.... +. .+.....-| +..|+++ .+.| .+. .++.++.+|.|.+.
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 668899887762 11 222212122 5677777 4445 222 37788899998843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.25 Score=51.37 Aligned_cols=206 Identities=17% Similarity=0.131 Sum_probs=114.4
Q ss_pred CeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCceeeee-eccccCCeeEEEECCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001386 841 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 915 (1088)
Q Consensus 841 ~i~~l~~sp~d~~~lasg~---~dg~i~lwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd-~~~~~ 915 (1088)
.+.+.++++ +++.+|... ....++++... ..... +.+. .+..-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 666665544 33355555433 32222 2333 678889999988877777677777774 23322
Q ss_pred eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcC---cc--eeee---eeecCCCcCEEEEEEe
Q 001386 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCLK---QWFPISSVPISQATFS 983 (1088)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~----d~~i~vwd~~---~~--~~~~---~~~~~h~~~v~~l~fs 983 (1088)
.. ...+...... ..|..+.+||||..+|... +++|.+--+. .+ ..+. .........++.+.|.
T Consensus 100 ~~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 11 1112222111 1599999999999999843 5677766543 33 1111 1111225688999999
Q ss_pred eCCCEEEEEeCCCc-EEE-EEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 984 CDCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 984 ~dg~~l~s~s~dg~-v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
+++.+++.+...+. +.. .....+.. ..+. .. ......++++-++ .. +.+.+++.+.- ...+.
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~-~~l~-~~-------~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~ 238 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPS-TPLP-SV-------NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGA 238 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCcc-cccC-CC-------CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCC
Confidence 99988776654433 333 33333321 1110 00 1112233444343 33 44555665554 66777
Q ss_pred CccccCCCCcc
Q 001386 1062 TWAVLPPDEIV 1072 (1088)
Q Consensus 1062 ~~~~~~~~~~~ 1072 (1088)
.|...+.....
T Consensus 239 ~W~~v~~~~~~ 249 (253)
T PF10647_consen 239 SWREVPGGVGD 249 (253)
T ss_pred cceEccCCCCC
Confidence 78776655543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=1 Score=54.46 Aligned_cols=245 Identities=9% Similarity=0.032 Sum_probs=122.5
Q ss_pred CCeEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----Cc
Q 001386 397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 466 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~ 466 (1088)
-.+..+.|||||++||.+.+. ..|++-|+.+|+.+.. .+.+ .-..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~---~~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN---VEPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC---cceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 346678999999999987432 3589999998864321 1222 11469999999863 3333222 36
Q ss_pred EEEEeCCCC--ceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCC--CCceEEecCCCCceEEEEEcc
Q 001386 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 539 (1088)
Q Consensus 467 i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~ 539 (1088)
|..+++.++ +....+........ +......++.+++..+.. +.+.+++.+. ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 788888888 33334443333333 222224355555544433 4688888533 222222222222222222 2
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCC-CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEe
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 617 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~ 617 (1088)
.+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444333334455555655 2322 2333331 123677777773 34555566677655554432 23334433
Q ss_pred CCCCCCCCceEEEe--cCCC-EEEEEeC---CCcEEEEeCCCC
Q 001386 618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 654 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 654 (1088)
.... ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1111 012222333 3333 3333332 366777777664
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.16 Score=55.94 Aligned_cols=84 Identities=12% Similarity=0.244 Sum_probs=58.2
Q ss_pred CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC-----------------CE
Q 001386 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ 592 (1088)
Q Consensus 530 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~ 592 (1088)
..+.+++.+|++++.++. |.-+.|.++|+.++..++..+|.. ...+.-+.....+ .+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357789999998877764 446679999999999999998876 2222211111111 12
Q ss_pred EE-EEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 593 IL-AAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 593 l~-~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
|+ -+-.-|.|.||++++|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 22 2567899999999999988887653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.089 Score=57.43 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=101.9
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC----CCEEEEEeC----------CCEEEE
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGVAYS----------KHIVQL 422 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d----g~~las~~~----------dg~i~v 422 (1088)
+.|+|.|..+.+.+....+. -..+-..+..+.|..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 45788888888877654432 0111123334445443 578888752 288999
Q ss_pred EEccCC----CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEe-ccCCccEEEEeeeee
Q 001386 423 YAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSF-EGHGAPVYSLCPHAK 496 (1088)
Q Consensus 423 wd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~-~~~~~~v~~~~~~~~ 496 (1088)
+++... ..++.... ....++|++++-- ++. ++.+. .+.|.+|++...+ ....- ......+.++.. .
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~ 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--F 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--E
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--c
Confidence 999984 22332222 2457889998766 333 33333 4789999998887 43222 212335666654 2
Q ss_pred CCceEEEEEecCCeEEEEECCCCCc-eE--EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 497 ENIHFIFSISVDGKIKAWLYDSLGA-RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 497 ~~~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
+ .+++.|...+.+.++.++.... .. .-......++++.|-++++.++++- ..+.+.++...
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYN 202 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-
T ss_pred c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEEC
Confidence 2 4899999888888876654332 22 2223345688888887777555553 24446665443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0035 Score=69.02 Aligned_cols=92 Identities=15% Similarity=0.286 Sum_probs=78.6
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeE-EEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 798 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT-SLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
...+.-+.|+|.-.++|.+. +|.+.+..++ .+.+.++..|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45677899999999999997 8999999998 899999998887777 999999 8999999999999999999998877
Q ss_pred eeec-cccCCeeEEEEC
Q 001386 876 SKLE-GHSKRVTGLVFS 891 (1088)
Q Consensus 876 ~~l~-~h~~~V~~l~~s 891 (1088)
..+. .-..+|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 6532 244567788886
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.002 Score=43.89 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.7
Q ss_pred ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 872 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 872 ~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
++.+..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.27 Score=53.61 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=122.0
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCcee---EEEe----cCCCCCeEEEEEcCC---CCcEEEEEeCC--------
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 861 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---d~~~lasg~~d-------- 861 (1088)
..++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46789999999998887799999999 44443 2222 123356799999992 24444444422
Q ss_pred CeEEEEEcCCc-------e-eeeeecc---ccCCeeEEEECCCCCEEEEEeCCCc-----------EEEEEcCC-Cceee
Q 001386 862 STILIYNARSS-------E-VISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQT 918 (1088)
Q Consensus 862 g~i~lwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~dg~~las~s~Dg~-----------i~iwd~~~-~~~~~ 918 (1088)
..|.-|....+ + ++..+.. .......|+|.|||.+.++.+..+. =+|+.++. ++...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24444544433 1 1222222 2233467999999988777765442 01122211 00000
Q ss_pred eeeee---------cCCCCccCCCCeEEEEEcCC-CCEEEE--EeCCeEEEEEcCcceee--------------------
Q 001386 919 CRSLQ---------TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTCL-------------------- 966 (1088)
Q Consensus 919 ~~~~~---------~~~~~~~~~~~v~~~~fs~d-g~~l~~--~~d~~i~vwd~~~~~~~-------------------- 966 (1088)
..... ...|. .-...++|.|. |++.++ +.+..=.|--+..|.--
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00000 00011 12568999999 777776 44433222222222110
Q ss_pred -------eeeecCCCcCEEEEEEee-------CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEE
Q 001386 967 -------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1032 (1088)
Q Consensus 967 -------~~~~~~h~~~v~~l~fs~-------dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
..+...+...+..+.|-. .|.++++.-..+.|....+.++.......... . ....++..+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~---~~~~r~~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL---G---GFGGRPRDV 311 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC---T---TSSS-EEEE
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc---c---cCCCCceEE
Confidence 000112345666777754 45566655556677777777554332222111 1 112256789
Q ss_pred EECCCCCCEEEEEeCCCcEE
Q 001386 1033 AAHPLKPTQFAVGLTNGEVY 1052 (1088)
Q Consensus 1033 ~~~p~d~~~l~~~~~dg~v~ 1052 (1088)
++.| ||.++++...+|.|+
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 9999 899999988899875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=1.6 Score=52.72 Aligned_cols=244 Identities=10% Similarity=0.009 Sum_probs=122.1
Q ss_pred CceeeeecCCCCeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+..+.+||||++++.+.+.+| +|++-|+.+|+.+... +. ..-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------------i~---~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------------LD---NVEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------------cc---CcceEEEEeeCCCEE
Confidence 5778899999996544444433 5889999888644210 11 111459999999888
Q ss_pred EEEeCC------CEEEEEEccCCCcccceeEeccCCCCEE-EEEecCCCCcEEEEEEe-CCCcEEEEeCC--CCceeEEe
Q 001386 412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 481 (1088)
Q Consensus 412 as~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~s-~d~~i~vwd~~--~~~~~~~~ 481 (1088)
+.+..+ ..|..+++.++..-.. ..+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776542 3578888888731111 12333233333 33445588853322222 23578888843 34432222
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCC-CCceEEecC-CCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
....+....+. + . ++.+++....+ ..|...++.. .+....+.. ....+..+.+. ++.|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 22222222222 1 1 22333332222 2344444442 222223333 23367777776 4455544432 44666
Q ss_pred EEEEeCCCCceeEEEe-ccccccccEEEEEEe--CCCC-EEEEEe---CCCcEEEEEcCCCe
Q 001386 557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 611 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 611 (1088)
+++++..++. +..+. ... ..+..+.++ +++. .+++.+ .-+.+..+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 8888865443 33332 111 123333344 3444 333332 34678888887764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.024 Score=66.88 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=98.2
Q ss_pred CCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc-EEEEeeeee---CCceEEEEEecCCeEEEEECCCCCceEE----
Q 001386 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVD---- 524 (1088)
Q Consensus 453 ~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~---- 524 (1088)
.+.++|........|+-.|+++|+.+..+..|... |..++.... -+..-.+.|-.+..+..||.+-......
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34434555556688999999999999999887654 776654211 0123467788888999999987543221
Q ss_pred -ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEE
Q 001386 525 -YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 525 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1088)
.-.......|++-+.+| +||+|+. .|.|++||.-..+....+.+.. .+|..+..+.||+++++.+. ..+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence 11233467788877777 5555654 3449999954444444455555 89999999999999988774 4555
Q ss_pred EEEc
Q 001386 604 IWDM 607 (1088)
Q Consensus 604 iwd~ 607 (1088)
+++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.018 Score=62.13 Aligned_cols=144 Identities=9% Similarity=0.107 Sum_probs=102.5
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001386 854 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 926 (1088)
Q Consensus 854 ~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~--l-----as~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 926 (1088)
++.++.....++--|++.|+.+..++-|.. |+-+.+.|+.+. | +.|=.|..|.-||..-..... +....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---l~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---LAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---eeeee
Confidence 444555566789999999999999998877 777888886532 2 124457778889987433211 11112
Q ss_pred CCcc-CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 927 GVMT-LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 927 ~~~~-~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
++.- ......|.+-..+|..++.+.+|.|++||- .+....+.+++-+.+|..+..+.||++|+.. .+.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 2211 112366777778888777789999999997 7888888888889999999999999998854 4666666654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.072 Score=45.63 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=49.1
Q ss_pred eEEEEEcC---CCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 842 ATSLAFNP---HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 842 i~~l~~sp---~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
|+++++.. ++.+-|++|+.|..|++|+-. +.+..+.. .+.|++++-... ..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 55666544 234689999999999999744 56666663 455788777766 5678888999998887644
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.19 Score=54.30 Aligned_cols=238 Identities=11% Similarity=0.087 Sum_probs=112.6
Q ss_pred CCceEEEec-cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe---C--
Q 001386 745 GGQAIFALA-SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---G-- 818 (1088)
Q Consensus 745 ~g~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---d-- 818 (1088)
+.++|+..+ ..+.|.|.|+.+... .+++..+.....+... ..-.....+..-|+|..++++- +
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr------~P~l~KvIe~~ev~~k-----~g~s~PHT~Hclp~G~imIS~lGd~~G~ 154 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPR------KPRLHKVIEPEEVFEK-----TGLSRPHTVHCLPDGRIMISALGDADGN 154 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TT------S-EEEEEE-HHHHHHH-----H-EEEEEEEEE-SS--EEEEEEEETTS-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCC------CCceEeeeCHHHHHhh-----cCCCCCceeeecCCccEEEEeccCCCCC
Confidence 455666655 678999999876544 3333332222111100 0011223345567998888873 2
Q ss_pred --CcEEEEEcCCceeEEEecCCCC---CeEEEEEcCCCCcEEEEEeC--------------------CCeEEEEEcCCce
Q 001386 819 --GVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGMD--------------------DSTILIYNARSSE 873 (1088)
Q Consensus 819 --g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~~--------------------dg~i~lwd~~~~~ 873 (1088)
|.+.++|-++.+.......... .-..+-+.| ..+.+++... ..++.+||+.+.+
T Consensus 155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 4589999998888777654332 335677788 6777777532 3489999999999
Q ss_pred eeeeecccc--CCeeEEEECC--CCCE-EEEEeCCCcEEEE-EcCCCceeeeeeeecCCCCc------c-------CCCC
Q 001386 874 VISKLEGHS--KRVTGLVFSD--ALNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVM------T-------LAPS 934 (1088)
Q Consensus 874 ~~~~l~~h~--~~V~~l~~s~--dg~~-las~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~------~-------~~~~ 934 (1088)
.++++.--. ....-|.|.. +..+ ++.+.-..+|..| .-+.++-.....+....... . ...-
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 998886422 2345677754 4444 3333344444444 33555544444554443210 0 0135
Q ss_pred eEEEEEcCCCCEEEEE--eCCeEEEEEcCcce---eeeeeecCC---------------CcCEEEEEEeeCCCEEEEEeC
Q 001386 935 ETHIQFHKDQTRFLLV--HETHLAIYEAEELT---CLKQWFPIS---------------SVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~---~~~~~~~~h---------------~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
|+.+..|.|.++|.++ ..|.|+.||++... ...+...+- .+...-+..|-||+.|.+.++
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 7999999999999996 57899999998643 333322220 234577889999998876543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.18 Score=52.36 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=91.9
Q ss_pred CCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE-cCCceee
Q 001386 799 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 875 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd-~~~~~~~ 875 (1088)
..+.+.++|+|++.+|... ++.-.+|-...+.....+. ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688899999999888766 5554444444444333332 234788889999 677777777677667763 3333321
Q ss_pred -eeecc--ccCCeeEEEECCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCccCCCCeEEEEEcCCCC
Q 001386 876 -SKLEG--HSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 945 (1088)
Q Consensus 876 -~~l~~--h~~~V~~l~~s~dg~~las~s---~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~fs~dg~ 945 (1088)
..+.. -.+.|..+.+||||..+|... .++.|.+=-+...... ....+..... ....+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCCCE
Confidence 11221 122899999999999988766 3577777766533221 1111122211 123689999999999
Q ss_pred EEEEE
Q 001386 946 RFLLV 950 (1088)
Q Consensus 946 ~l~~~ 950 (1088)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88884
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.73 E-value=1 Score=49.03 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=39.7
Q ss_pred cEEEEEEeC-------CCCEEEEEeCCCcEEEEEcCCCeeeE-EEeCCCCC-CCCceEEEecCCCEEEEEeCCCcEE
Q 001386 580 SVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLT-TIDAGGGL-PENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 580 ~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
.+..+.|.. .|.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455666653 34455555556777777776443322 22211222 2578999999999888888788764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.1 Score=47.22 Aligned_cols=157 Identities=12% Similarity=0.058 Sum_probs=82.9
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 001386 837 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 916 (1088)
Q Consensus 837 ~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~ 916 (1088)
...+.+..+..++ |+++++++..-....-||--...-...-..-..+|.++.|+||+.+.+.+ ..|.|+.=+.....
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~- 218 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG- 218 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE-
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc-
Confidence 3456788888898 89999888655555567654221111122245789999999998876644 88888887722211
Q ss_pred eeeeeeecCC-CCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeec--CCCcCEEEEEEeeCCCEEEEEe
Q 001386 917 QTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 917 ~~~~~~~~~~-~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
....... ......-.+..++|.+++...|++..+.+. .....|+.-..-.. .-......+.|..+.+-++ .+
T Consensus 219 ---~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG 293 (302)
T PF14870_consen 219 ---ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG 293 (302)
T ss_dssp ---EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred ---cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence 1111100 000111247899999999999998888653 44555554443322 2256788999987755555 45
Q ss_pred CCCcEEEE
Q 001386 994 VDGTLSIH 1001 (1088)
Q Consensus 994 ~dg~v~vw 1001 (1088)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78887655
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.038 Score=59.84 Aligned_cols=144 Identities=10% Similarity=0.086 Sum_probs=95.9
Q ss_pred CCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceE-----EEEEecCCeEEEEECCCCCc-eE-Ee
Q 001386 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF-----IFSISVDGKIKAWLYDSLGA-RV-DY 525 (1088)
Q Consensus 453 ~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~~~dg~i~iwd~~~~~~-~~-~~ 525 (1088)
...+++.++.....++-.|++.|+.+..+..+.. |+-+.+.+...+.. -+.|-.|..|.-||.+-... .. ..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3444677777778899999999999999987766 55555554433322 34566788899999885443 11 11
Q ss_pred cC----CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 526 DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 526 ~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
.. ......|.+-..+| ++++++..++ |++||.-.......+++.. .+|..+..+.+|+++++.+. ..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd----IRLYdri~~~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~-ty 493 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGD----IRLYDRIGRRAKTALPGLG---DAIKHVDVTADGKWILATCK-TY 493 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCc----EEeehhhhhhhhhcccccC---CceeeEEeeccCcEEEEecc-cE
Confidence 11 12245666666666 5666665443 9999974444445566666 89999999999999888764 34
Q ss_pred EEEEE
Q 001386 602 IKIWD 606 (1088)
Q Consensus 602 i~iwd 606 (1088)
+.+-+
T Consensus 494 LlLi~ 498 (644)
T KOG2395|consen 494 LLLID 498 (644)
T ss_pred EEEEE
Confidence 44444
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0094 Score=40.33 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=33.5
Q ss_pred ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001386 829 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 829 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd 868 (1088)
++....+..|...+.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345666777888999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.4 Score=44.96 Aligned_cols=186 Identities=9% Similarity=0.098 Sum_probs=114.7
Q ss_pred CCeeEEEEecCCCEEEEEe-C--CcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001386 799 EAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
.-...+.|..+|.++-+.+ . ..|+.+|+.+++......-+. ----.++.. ++++...--.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3456788888888877776 3 469999999998876654333 233455555 456777778899999999999998
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCC
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 953 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~ 953 (1088)
+.++.- .+.=..++ .||+.|+.......|.++|-.+-+......+... +... ..+.-+-+- +|...|-. ...
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-g~pv--~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-GRPV--SNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET-TEE-----EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC-CEEC--CCcEeEEEE-cCEEEEEeCCCC
Confidence 888863 45567777 4666676666666788898876543332222211 1111 235556664 56655554 556
Q ss_pred eEEEEEcCcceeeeeeecC-----------C---CcCEEEEEEeeCCCEEEEEe
Q 001386 954 HLAIYEAEELTCLKQWFPI-----------S---SVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 954 ~i~vwd~~~~~~~~~~~~~-----------h---~~~v~~l~fs~dg~~l~s~s 993 (1088)
.|...|..+|++...+-.. + ..-...+|+.|.+..+.+.+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7888899999988764210 1 34578899988766555443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.27 Score=57.83 Aligned_cols=195 Identities=9% Similarity=-0.026 Sum_probs=102.2
Q ss_pred CCcEEEEEeCC------CeEEEEEcCCcee--eeeeccccCCeeEEEECCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001386 851 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 917 (1088)
Q Consensus 851 d~~~lasg~~d------g~i~lwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~las~s~Dg-----~i~iwd~~~~~~~ 917 (1088)
++.+.++|+.+ ..+..||..+..- +..+.........+ .-+|++.+.||.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 67788888854 3578899877642 22222112222222 23678888888764 4788998875432
Q ss_pred eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe-C-----------------------CeEEEEEcCcceeeeeeecCC
Q 001386 918 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E-----------------------THLAIYEAEELTCLKQWFPIS 973 (1088)
Q Consensus 918 ~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~-d-----------------------~~i~vwd~~~~~~~~~~~~~h 973 (1088)
....+...... . .+..-+|+..+.|+ + ..+..||..+.+-...... .
T Consensus 381 ~~~~mp~~r~~------~--~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~ 451 (557)
T PHA02713 381 MLPDMPIALSS------Y--GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-W 451 (557)
T ss_pred ECCCCCccccc------c--cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-C
Confidence 22221111111 1 12233677766642 2 2477888776543211111 1
Q ss_pred CcCEEEEEEeeCCCEEEEEeCC------CcEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001386 974 SVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1046 (1088)
Q Consensus 974 ~~~v~~l~fs~dg~~l~s~s~d------g~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~ 1046 (1088)
......-+..-+|+..+.|+.+ ..+..||..+ .+.... . .++.. .....++.. ++.+.++||
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~-~---~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI-T---TTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-c---ccCcc-----cccceeEEE--CCEEEEEee
Confidence 1112222334467777777654 2467788887 454321 1 11111 111223333 579999999
Q ss_pred CCC--cEEEEeCCCCCCCccccCCC
Q 001386 1047 TNG--EVYVIEPNEPGDTWAVLPPD 1069 (1088)
Q Consensus 1047 ~dg--~v~~w~l~~~~~~~~~~~~~ 1069 (1088)
.|| ++..||+.. .+|....|-
T Consensus 521 ~~~~~~~e~yd~~~--~~W~~~~~~ 543 (557)
T PHA02713 521 YESYMLQDTFNVYT--YEWNHICHQ 543 (557)
T ss_pred ecceeehhhcCccc--ccccchhhh
Confidence 999 777788744 458755443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.18 Score=59.19 Aligned_cols=202 Identities=7% Similarity=-0.035 Sum_probs=100.4
Q ss_pred CCCcEEEEEEeCC------CcEEEEeCCCCcee--EEeccCCccEEEEeeeeeCCceEEEEEecCC-----eEEEEECCC
Q 001386 452 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 518 (1088)
Q Consensus 452 d~~~l~l~s~s~d------~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 518 (1088)
++. +++.||.+ ..+..||+.+..-. ..+.........+.+ ++...+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 55666643 34778888776432 111111111122222 556777787764 377888775
Q ss_pred CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC-------------------ceeEEEEeCCCCceeEEEeccccccc
Q 001386 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 579 (1088)
Q Consensus 519 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1088)
..=...-..+.......+..-+|+..+.||.++.. ...+..||+.+.+-...-.-.. .
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 43222111111111111223367776766643211 2458889988775533222111 1
Q ss_pred cEEEEEEeCCCCEEEEEeCC------CcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC--cEEEEe
Q 001386 580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 650 (1088)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iwd 650 (1088)
........-++...+.|+.+ ..+..||..+ .+....-...........+ .-++++.++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE--EECCEEEEEeeecceeehhhcC
Confidence 11111122345555666643 2467899887 4544332222221111222 23688899999888 677788
Q ss_pred CCCCCccccccccc
Q 001386 651 TPESNSVDAAGVLS 664 (1088)
Q Consensus 651 ~~~~~~~~~~~~~~ 664 (1088)
..+.+.......|.
T Consensus 532 ~~~~~W~~~~~~~~ 545 (557)
T PHA02713 532 VYTYEWNHICHQHS 545 (557)
T ss_pred cccccccchhhhcC
Confidence 88776554444443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.4 Score=48.63 Aligned_cols=172 Identities=7% Similarity=0.071 Sum_probs=112.8
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEE
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 956 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~ 956 (1088)
+.+-...|.+++|+|+.+.|++......-.||=...|+.....++..... ...+.+..+|.+.++ -.++.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-------pE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-------PETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-------hhHeEEecCCEEEEEehhcceEE
Confidence 44545569999999999999998888877777666766555544444332 346888888888888 4677888
Q ss_pred EEEcCcceeeeeee--------cCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccc
Q 001386 957 IYEAEELTCLKQWF--------PIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1027 (1088)
Q Consensus 957 vwd~~~~~~~~~~~--------~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1088)
++.+..+....... ..+ +...-.++|+|.+..|+.+=.-.-+.|+.+..+.-.-..... ..+.. ...+
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~-~~~~~--~~~~ 230 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS-LDPTA--DRDL 230 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc-cCccc--ccce
Confidence 88776553221111 112 667788999999999998888888888877644311111100 00000 1112
Q ss_pred cc---eEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1028 YP---HAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1028 ~~---~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
+. ..+.|++..+++|+-+..++.+...++...
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 22 346788878899999988888888777443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.37 Score=56.51 Aligned_cols=235 Identities=11% Similarity=0.016 Sum_probs=124.3
Q ss_pred CCCEEEEEeCC------CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC------CcEEEEeCCC
Q 001386 407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 474 (1088)
Q Consensus 407 dg~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d------~~i~vwd~~~ 474 (1088)
.+..+++|+.+ ..+..+|..+++-.. ...+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666665 358888888774221 11222 222233444443 44 77888888 3577888887
Q ss_pred CceeE--EeccCCccEEEEeeeeeCCceEEEEEecCCe-----EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
++-.. .+...........+ +|.+.+.|+.||. |-.||..+.+-...-.-....-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76332 12211111111111 6678899999875 6677766544322221222112222233467777777
Q ss_pred eeCCCCc--eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc-----EEEEEcCCCeeeEEEeCCC
Q 001386 548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~ 620 (1088)
|.++..+ ..+..||+.+.+....-.-.. ...... ++ .-++...+.|+.|+. |..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7655432 678899998876543332222 001112 22 234566667776653 7778888776655432222
Q ss_pred CCCCCceEEEecCCCEEEEEeCCC-----cEEEEeCCCCC
Q 001386 621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 655 (1088)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 655 (1088)
... ..-...-+++..++|+.|| +|..||..+++
T Consensus 512 ~rs--~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 512 PRS--AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccc--cccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 211 1111223577778888775 46666665553
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.13 Score=44.07 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=64.8
Q ss_pred ceeeee---cCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 337 V~~v~~---spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
|+++++ ..||+.-|++|+.|..|+||+=. +.+... . -.+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-------------------~-e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-------------------T-ETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-------------------e-cccceEEEEEcCC-CEEEE
Confidence 555555 45666779999999999999854 333321 1 3467888777765 67899
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe---cCCCCcEEEEEEeCCCcEE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF---SAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~---s~d~~~l~l~s~s~d~~i~ 468 (1088)
+..+|+|-+|+-... +- ..+... .++++++ ..||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999998876331 11 222222 3555544 334443 577887787764
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.073 Score=62.82 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.7
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
-+..+|.|++.|.+-..|+.+. +++...-..-.++|++++|+.||+ .++.|-.+|.|.+||..+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999988888764 222212223457999999999999 788899999999999999999999988888
Q ss_pred cEEEEeeee-eCCceEEEEEecCCeEEEEEC
Q 001386 487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 516 (1088)
Q Consensus 487 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 516 (1088)
+.+.+-+.. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765543 334456788777776 4543
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.21 E-value=2.7 Score=46.60 Aligned_cols=277 Identities=13% Similarity=0.106 Sum_probs=153.5
Q ss_pred CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-----CCCEEEEEeCC
Q 001386 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFSASGG 819 (1088)
Q Consensus 745 ~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~l~~~~dg 819 (1088)
+...+++|+..|.++||+-..+... ....+.+.. -..+|..++.-+ +...||+-.-.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~-------------~~~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ-------------PEDLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC-------------CccEEEEEe-----cCCcEEEEEeccccCCCCcceEEEecCC
Confidence 3457889999999999986433221 001122222 345666665432 44577777788
Q ss_pred cEEEEEcCC--ce-------eEEEecCCC--CCeEEEEEcCC----CCcEEEEEeCCCeEEEEEcCCceeeeeeccccCC
Q 001386 820 VISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 884 (1088)
Q Consensus 820 ~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~----d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~ 884 (1088)
++.+|.+.. |. .+..+..|. .....++.-|. +..++.+=+.||.+.+|+-+.-.....+.+ .--
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 888888731 11 122222232 22333443332 246899999999999999776555555554 222
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCC---C-c-----------------eeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 885 VTGLVFSDALNILVSSGGDAQIFVWDVDG---W-G-----------------IQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 885 V~~l~~s~dg~~las~s~Dg~i~iwd~~~---~-~-----------------~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
...+++.+.-..+++++.+..+.-|.... . + ......+..-+.. -.|..+.++..
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~----l~i~v~~~~~~ 252 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA----LDIQVVRFSSS 252 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee----EEEEEEEcCCC
Confidence 34477888888899999888888887532 0 0 0000111111111 12344445555
Q ss_pred CCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEE-EEEee----CCC---EEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 944 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ-ATFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 944 g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~----dg~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
...+++-.+.++.+.+.. |.......- .....+ ..|.. ++. .+++++.++++.||.=.+....+...
T Consensus 253 ~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~-- 327 (418)
T PF14727_consen 253 ESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP-- 327 (418)
T ss_pred CceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC--
Confidence 556666666777777764 544333221 122222 22222 222 48889999999999755554443332
Q ss_pred cccCCCCccccccceE--EEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1016 AYLRPTTSCLHVYPHA--IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1016 ~~~~~~~~~~~~~~~~--~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
..|++ ++.-++-..++++-+.+|.+.+-=|-...
T Consensus 328 -----------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 328 -----------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred -----------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 11222 33222235788889999999887664433
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=2.5 Score=46.11 Aligned_cols=158 Identities=10% Similarity=-0.004 Sum_probs=87.8
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 001386 882 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 961 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~ 961 (1088)
.+.+.++.+.|++.+++++ ..|.+.. ..+.+. .....+..... ..+..+.+.++++.++++..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999998776654 4564432 212211 11222222111 25889999999999888877766533344
Q ss_pred cceeeeeeecC---CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCC
Q 001386 962 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1038 (1088)
Q Consensus 962 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d 1038 (1088)
.|+.-.....+ ....+..+.+.+++..++ ++.+|.|. ...+.|+.-.........+. ....+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-------~~~~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-------NFYKIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-------ceEEEEEeC--
Confidence 44433221111 134578899999887665 44677554 45555553322221111111 123344553
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 001386 1039 PTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1039 ~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
++..+.++..|.|..|+-..
T Consensus 313 ~~~~~~~G~~G~il~~~~~~ 332 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGSA 332 (334)
T ss_pred CCceEEECCCceEEEecCCC
Confidence 34556678899998887543
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.17 E-value=4.4 Score=48.59 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=64.1
Q ss_pred EEEecCCCEEEEEeCCcEEEEEcCCceeEEEe--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE--EEcCCceeeeeec
Q 001386 804 FALSKNDAYLFSASGGVISLYIVMTFKTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKLE 879 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~i~l--wd~~~~~~~~~l~ 879 (1088)
.++.|-..++.+|-+..+++||+...+..+.. +.....|+.+.+ .+..+++|...-.|.. |+-...++ ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 46677777888888999999999877665543 323456777777 4567777776665655 44443443 3343
Q ss_pred cc--cCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 880 GH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 880 ~h--~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
.. ...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 21 2235555554 44566766666666555554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.06 E-value=2.5 Score=44.75 Aligned_cols=231 Identities=11% Similarity=0.042 Sum_probs=110.8
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-e
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-I 875 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~-~ 875 (1088)
...++.|..+ ..++++..+ +.+...+.|+.-..+. .-......+.... ++..++ ++..|.|+.= ...|+. .
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 3566777543 445555444 4444444444433332 1122333344333 333333 3455654432 222322 1
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeE
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 955 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i 955 (1088)
.....-.+.+..+.-++||+++++++.-....-||-.... ......... ..|..+.|+||+.+.+++..+.|
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~~ 209 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQI 209 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcEE
Confidence 2233445778999999999999987666656677755321 222222211 36999999999999888888888
Q ss_pred EEEE-cCcceeeeee-ec--CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceE
Q 001386 956 AIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031 (1088)
Q Consensus 956 ~vwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
+.=+ ....+..... .+ .....+..++|.+++...++| ..|++ +...+.|+--.+-......+.. ...
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n-------~~~ 280 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSN-------LYR 280 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS----------E
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCCccceECccccCCCCc-------eEE
Confidence 8877 3333332221 11 124458999999988777755 45544 4566777655444433333322 244
Q ss_pred EEECCCCCCEEEEEeCCCcEEEE
Q 001386 1032 IAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 1032 ~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
+.|.+ ++.-++-+.+|.|.-|
T Consensus 281 i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEcC--CCceEEECCCcEEEEe
Confidence 66654 2455556688887665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.3 Score=43.39 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=112.8
Q ss_pred eccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC-CccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
+.+-...+.++.|+|+.+ .|++......-.||=..+|+.+.++.-. -.....+.+ -.++.++++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEE
Confidence 345556699999999999 5666666666667766789988877421 112223333 34667888888888888887
Q ss_pred CCCCCceEE-------ec---CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccc----ccc
Q 001386 516 YDSLGARVD-------YD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQ----HNS 580 (1088)
Q Consensus 516 ~~~~~~~~~-------~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~----~~~ 580 (1088)
++....... +. ..+.....++|+|....|..+-.-. -..|+.|+..... .......+... -..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~--P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN--PIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC--CcEEEEEecCCcccccccccCcccccceEeec
Confidence 766543221 11 1244678899999999988875422 3334455422211 11111111100 145
Q ss_pred EEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeeeEEEeCCCCC-------CCCceEEEecCCCE
Q 001386 581 VSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGL-------PENPRICFNKNGTL 636 (1088)
Q Consensus 581 v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~v~~v~~s~~~~~ 636 (1088)
+.++.|++..+.+++ +.+++.+.-.|.. |..+..+....+. +..-.++..++|.+
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 778888876555555 5566777777764 4445555443321 22334555555543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.62 Score=55.49 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=70.0
Q ss_pred EEEEEcccCcEEEEecCCCcc-eeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQK-LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~ 427 (1088)
+++.|++.|.+-..|+.+.-. .. | -..-.++|++++|+.||+.++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~------~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH------Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh------c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 578888888888888765311 10 0 122468999999999999999999999999999999
Q ss_pred CCcccceeEeccCCCCEEE---EEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 428 GSDARQQLEIDAHVGNVND---LAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~---~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
++.++. +..|..+.+. +.+..++. .++++..-|. +|.+
T Consensus 162 ~k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred Ccceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 887774 4445444443 44455555 6778777775 5653
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.2 Score=48.37 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=103.7
Q ss_pred ceEEEEEe-cCCeEEEEECCCCC----ceEEecC---CC----CceEEEEEccCCCEEEEEeeC--CCCceeEEEEeCCC
Q 001386 499 IHFIFSIS-VDGKIKAWLYDSLG----ARVDYDA---PG----LGCTRMAYSANGRRLFSCGTS--KEGESFLVEWNESE 564 (1088)
Q Consensus 499 ~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~---~~----~~v~~~~~s~~g~~l~~~~~~--~~~~~~i~iwd~~~ 564 (1088)
.++|+..+ ..++|.+.|+.+.. ....+.. .. ..-..+-.-|+|+.++++-.+ +++.+-+.+.|-.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 35666665 67889999987432 1222221 00 112234455899998876554 34556788999988
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEe--------------------CCCcEEEEEcCCCeeeEEEeCCCCCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1088)
.+..............-..+.+.|..+.+++.. ...++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888877765442223445677888888888754 235799999999999999987643222
Q ss_pred CceEEEecC--CCEEEEE-eCCCcEEEE-eCCCCCc----cccccc-----------------ccCcceeeeecCCCcce
Q 001386 625 NPRICFNKN--GTLLAVI-ANENRIKIL-ETPESNS----VDAAGV-----------------LSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 625 v~~v~~s~~--~~~l~~~-~~dg~i~iw-d~~~~~~----~~~~~~-----------------~~~~v~~~~~~p~~~~~ 679 (1088)
...+.|..+ ..+-.++ ....+|..| ....+.- +..+.. ...-++.+.+
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i------- 319 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI------- 319 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-------
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE-------
Confidence 345666543 3332222 233344443 3333311 000000 0111233333
Q ss_pred eccccCCceeecCCCCCCCCcc-cccccCccceecccccc-CCCcceeeecCCc------------cccccEEEEEEecC
Q 001386 680 GAGIANGSVSVNEDPKEDVKPE-ISVEAENKSEVEKPLFA-RPSECQSLLLPSK------------VKANKISRLTYNNG 745 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~------------~~~~~i~~~~~s~~ 745 (1088)
+.|.++| ++.-.+|.++.||+.-. .+.....+.+... .-.+....+..|-|
T Consensus 320 ---------------SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~D 384 (461)
T PF05694_consen 320 ---------------SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLD 384 (461)
T ss_dssp ----------------TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TT
T ss_pred ---------------ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccC
Confidence 3445554 56777899999996543 2222222222211 12234567888999
Q ss_pred CceEEEecc
Q 001386 746 GQAIFALAS 754 (1088)
Q Consensus 746 g~~l~~~~~ 754 (1088)
|++|....+
T Consensus 385 GkRlYvTnS 393 (461)
T PF05694_consen 385 GKRLYVTNS 393 (461)
T ss_dssp SSEEEEE--
T ss_pred CeEEEEEee
Confidence 998877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.27 Score=54.55 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCceeeeeeccccCCeeEEEECCC----CCEEEEEeCCCcEEEEEcCC
Q 001386 840 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~--~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d----g~~las~s~Dg~i~iwd~~~ 913 (1088)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..|+ .|..+.|+|- -..|...-....|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 5678899984 444444432 333333222 23444443 4899999984 33444456778899999873
Q ss_pred Cc--eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEE
Q 001386 914 WG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 990 (1088)
Q Consensus 914 ~~--~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 990 (1088)
.. ..+...-+..+-......--..+.|+|....|++ ...+.-.++++......-..-....+.|.|.+|..||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 22 2222222222111111112357889999999988 44444345565533322222223478899999999999887
Q ss_pred EEeCC-CcEEEEEcCCC
Q 001386 991 TSFVD-GTLSIHEASNL 1006 (1088)
Q Consensus 991 s~s~d-g~v~vwd~~~~ 1006 (1088)
++-.. =.-++||-...
T Consensus 172 VAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEeCCeEEEEEecCchh
Confidence 66443 24578985544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.68 E-value=2.9 Score=50.58 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeEEEecCCCCC--------eEEEEEcC---------------CCCcEEEEEeCCCeEE
Q 001386 809 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 865 (1088)
Q Consensus 809 dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~sp---------------~d~~~lasg~~dg~i~ 865 (1088)
++.++++..++.|.-.|..+|+.+.++...... .+.+++-. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788888899999888776533211 12233321 0234788899999999
Q ss_pred EEEcCCceeeeeeccccCCee-------------EEEECC--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001386 866 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 866 lwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--dg~~las~s~----------Dg~i~iwd~~~~~~~~~~ 920 (1088)
-.|.++|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|..+|+..=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 22221 111122 1335555542 688999999998754322
Q ss_pred eeecCC-------CCcc--CCCCe-EEEEEcCCCCEEEEE-------------------eCCeEEEEEcCcceeeeeeec
Q 001386 921 SLQTPD-------GVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 971 (1088)
Q Consensus 921 ~~~~~~-------~~~~--~~~~v-~~~~fs~dg~~l~~~-------------------~d~~i~vwd~~~~~~~~~~~~ 971 (1088)
...... +..- ....+ ..+++.++...+... ..+.|.-.|.+||+..-.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 111000 0000 00011 234555555544431 124577889999998877654
Q ss_pred CC--------CcCEEEEEEee-CCC---EEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 972 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 972 ~h--------~~~v~~l~fs~-dg~---~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
-| .....-+.+.. ||+ .|+.++.+|.+.+.|-.+|+.+....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 33 11122223333 664 78899999999999999999987643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.67 E-value=2.4 Score=41.48 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=62.4
Q ss_pred EEEEecCCceEEEecc-ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001386 739 RLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 817 (1088)
Q Consensus 739 ~~~~s~~g~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1088)
.++|+.+.+.+....+ +-.|.-||++...-.. ...-.+++++..+.. ..-..-.+++..+|.+.++.-
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~--snr~~i~dlrk~~~~---------e~~~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL--SNRKVIFDLRKSQPF---------ESLEPDGMTIDTEGNLYVATF 230 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccc--cCcceeEEeccCCCc---------CCCCCCcceEccCCcEEEEEe
Confidence 5667766665554443 5667667743322111 112223444433211 112223456666787766664
Q ss_pred -CCcEEEEEcCCceeEEEecCCCCCeEEEEEcC
Q 001386 818 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 849 (1088)
Q Consensus 818 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 849 (1088)
.++|.-.|..+|+.+.++.-+...|++++|--
T Consensus 231 ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 78999999999999999999999999999964
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.63 E-value=3.1 Score=42.50 Aligned_cols=192 Identities=11% Similarity=0.051 Sum_probs=110.0
Q ss_pred ccEEEEEEecCCceEEEecccc--ceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 735 NKISRLTYNNGGQAIFALASNG--VHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
.-...+.|..+|..+-+.+..| .++.++ ..+|+......++ ...--..+++..|.-+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d------------------~~tg~~~~~~~l~---~~~FgEGit~~~d~l~ 103 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVD------------------LETGKVLQSVPLP---PRYFGEGITILGDKLY 103 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEE------------------TTTSSEEEEEE-T---TT--EEEEEEETTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEE------------------CCCCcEEEEEECC---ccccceeEEEECCEEE
Confidence 3456788888888888887766 444444 4455544444443 2334456666666555
Q ss_pred EEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-----CCeeE
Q 001386 813 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRVTG 887 (1088)
Q Consensus 813 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~-----~~V~~ 887 (1088)
..+..++...+||.++.+.+.++.- .+.-..++. |++.|+.......++++|..+.+....+.-.. ..++-
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 5566689999999999999988863 345566663 56677777667789999998876665554321 23444
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC-------CCccCCCCeEEEEEcCCCCEEEEEeC
Q 001386 888 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLVHE 952 (1088)
Q Consensus 888 l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fs~dg~~l~~~~d 952 (1088)
+.|- +|...|=.=....|..-|..+|+.....-+..+. .......-...+|+.|+...+.+...
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5554 5555554444445666677776644432222111 11111235789999988777766443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.9 Score=46.49 Aligned_cols=139 Identities=13% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCeeEEEEecCCCEEEEEe------------C-CcEEEEEcCC--ce--eEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001386 799 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD 861 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 861 (1088)
.....|+|.++|+++++.. . +.|.+++-.+ |+ ....+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4566899999999887752 1 2677776432 32 2234443445568899998 67 444 4444
Q ss_pred CeEEEEEcCC-------ce-eeeeecc----ccCCeeEEEECCCCCEEEEEeCC-------------------CcEEEEE
Q 001386 862 STILIYNARS-------SE-VISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 910 (1088)
Q Consensus 862 g~i~lwd~~~-------~~-~~~~l~~----h~~~V~~l~~s~dg~~las~s~D-------------------g~i~iwd 910 (1088)
...++.|... .+ ++..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333435432 11 2222322 23447789999999887766521 3344444
Q ss_pred cCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 911 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.++++. +.+. .+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence 444331 1121 2222 2568999999999887
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.93 Score=53.22 Aligned_cols=236 Identities=11% Similarity=0.071 Sum_probs=130.9
Q ss_pred ecCCCEEEEEe-C------CcEEEEEcCCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCC-C-----eEEEEEcCCc
Q 001386 807 SKNDAYLFSAS-G------GVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSS 872 (1088)
Q Consensus 807 s~dg~~l~~~~-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~d-g-----~i~lwd~~~~ 872 (1088)
+..+.++++|+ . ..+..||..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..+.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33455566665 3 3488899887643322221 22234455555 56899999999 3 7788888775
Q ss_pred e--eeeeeccccCCeeEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC
Q 001386 873 E--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 945 (1088)
Q Consensus 873 ~--~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~ 945 (1088)
+ .+..+...........+ +|.+.|+||.||. +..||..+.+... ....... .-...+..-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~---va~m~~~-----r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP---VAPMLTR-----RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccc---cCCCCcc-----eeeeEEEEECCE
Confidence 4 22333322222222222 6888899999864 7777777654222 2211110 122334445677
Q ss_pred EEEEE-eC------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC-----cEEEEEcCCCceEEEec
Q 001386 946 RFLLV-HE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 946 ~l~~~-~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg-----~v~vwd~~~~~~~~~~~ 1013 (1088)
..++| .+ ..+..||..++.-.......-...-.. .-+-++...+.|+.|+ +|..||..+.+....-.
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 77773 23 358889988776433211111111112 3344777888888776 37778888877653311
Q ss_pred cccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCccccCC
Q 001386 1014 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1068 (1088)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~l~~~~~~~~~~~~ 1068 (1088)
.... .....++-. ++.+.++|+.|| +|..||. ...+|...++
T Consensus 509 ----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~ 555 (571)
T KOG4441|consen 509 ----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTE 555 (571)
T ss_pred ----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCC
Confidence 1111 011112222 568899999998 6777866 4456876655
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.06 Score=38.30 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~ 426 (1088)
-...|.+++|+|...+||.++.+|.|.++.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34679999999999999999999999999993
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.035 Score=39.49 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.5
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcc
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 369 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~ 369 (1088)
..|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 4799999999999 8999999999999998 6554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.46 E-value=3.6 Score=49.40 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=56.7
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEcCC-ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
..-.|..+.++|+|+++|..+...|.|..+.. +.....+.+....|.|=.+.= +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 44578999999999999998877777766642 111111221112222222111 11111
Q ss_pred eeeccccCCeeEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q 001386 876 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~d---g~~las~s~Dg~i~iwd~~~ 913 (1088)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1123456788888885 47888888899999999975
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.048 Score=52.81 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=68.6
Q ss_pred EEEEE-eCCcEEEEEcCCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-CCeeEE
Q 001386 812 YLFSA-SGGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 888 (1088)
Q Consensus 812 ~l~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~-~~V~~l 888 (1088)
-+++| ++|.|.+|...-...... +..-...|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34445 599999998873222111 111222333333222255689999999999999999999888888888 566666
Q ss_pred EECCCCCEEEEE--eCCCcEEEEEcCC
Q 001386 889 VFSDALNILVSS--GGDAQIFVWDVDG 913 (1088)
Q Consensus 889 ~~s~dg~~las~--s~Dg~i~iwd~~~ 913 (1088)
..+..+++++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666667777777 7777788888765
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=5.2 Score=43.66 Aligned_cols=154 Identities=11% Similarity=0.031 Sum_probs=89.2
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEE-EEcCCceeeee-eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILI-YNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 916 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~l-wd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~ 916 (1088)
...+.++.+.| ++.++++| ..|.+.. ++ ..++.-.. -..-...++++.+.++++.++. +..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688999999 77776655 4565543 22 11221111 1223457899999999987765 4567654323343321
Q ss_pred eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeee--cCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 917 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
...+..+... ....+..++|.+++..++++.+|.+. .....|+.-.... ..-......+.|..+++.++ .+.
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 1111111110 11247889999999988888888665 3445454433321 11134577888887777666 457
Q ss_pred CCcEEEEE
Q 001386 995 DGTLSIHE 1002 (1088)
Q Consensus 995 dg~v~vwd 1002 (1088)
.|.|..|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 88888776
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.3 Score=47.38 Aligned_cols=113 Identities=12% Similarity=0.184 Sum_probs=78.4
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEe--cCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWD--VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
+.++|+.|.+.+..+-+.+-+|.-|| ..+|...... .++|+.+. +++.. +. ...++..-+|.+.+++.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~--~i~dlrk~-~~~e~--~~-----PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK--VIFDLRKS-QPFES--LE-----PDGMTIDTEGNLYVATF 230 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcc--eeEEeccC-CCcCC--CC-----CCcceEccCCcEEEEEe
Confidence 57889988888888888888998888 7788766432 24555433 22222 11 12244466889999998
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~ 463 (1088)
..++|...|..+|+.+. ++.-....|++++|-..+-.++.+++..
T Consensus 231 ng~~V~~~dp~tGK~L~---eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILL---EIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred cCcEEEEECCCCCcEEE---EEEcCCCceEEEEecCCCccEEEEEehh
Confidence 99999999999998776 4555578999999976543435555554
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.76 E-value=8.6 Score=42.78 Aligned_cols=280 Identities=11% Similarity=0.127 Sum_probs=142.5
Q ss_pred cCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-----CCCEEEEEeCC
Q 001386 343 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGVAYSK 417 (1088)
Q Consensus 343 spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-----dg~~las~~~d 417 (1088)
+++++..+++||.+|.++||+...+..... ...+-..-+.+|-.++.-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~---------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE---------------DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc---------------cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344555789999999999999955441110 0000122346777776542 2345555 466
Q ss_pred CEEEEEEccCCCcc------cceeEeccCCCC--EEEEEecC----CCCcEEEEEEeCCCcEEEEeCCCCceeEEecc--
Q 001386 418 HIVQLYAYHGGSDA------RQQLEIDAHVGN--VNDLAFSA----PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-- 483 (1088)
Q Consensus 418 g~i~vwd~~~~~~~------~~~~~~~~h~~~--v~~~~~s~----d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~-- 483 (1088)
..+.||.+...... ..+..+..|.-. ...++.-| .++. .+..=+.||.+.+++-+.-...+.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 67888888422111 111122333322 22222212 2233 778889999999998554333333333
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-----------------------eEEecCCCC--ceEEEEEc
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----------------------RVDYDAPGL--GCTRMAYS 538 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s 538 (1088)
..+++ ++.+.. +.+++++.+..+..|....... ...+..... .+..+.++
T Consensus 176 lPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 23444 443333 4788888888888886531110 001111111 23333344
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC----CC---CEEEEEeCCCcEEEEEcCCCe
Q 001386 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT----AK---DQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 539 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
.....+++-+ +..+.+.+. +|......+- . ..+...+.|.. ++ ..++.++.++++.||.- .+
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~ 319 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TT 319 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--Ce
Confidence 3333444433 445777765 4544333222 2 02222222221 22 24888999999999874 34
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
++.........-.+.-..|..-...+++-+.+|.+.+-=+.+..
T Consensus 320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 44443332111011112222335588888899999987666553
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.61 E-value=7.5 Score=46.77 Aligned_cols=31 Identities=13% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCceEEEecC---CCEEEEEeCCCcEEEEeCCCC
Q 001386 624 ENPRICFNKN---GTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 624 ~v~~v~~s~~---~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
.|..+.|+|. +..|++-+.|+++|+||+...
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 3567788874 578888888999999998754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.15 Score=49.54 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=66.1
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEE-ecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~-~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
-+..+++|+.+|.|.+|+...-..... ....-...|.++. -..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d--~~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSD--RVCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHH--hhhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence 357889999999999999873211111 0111222333332 233344 67888899999999999988887777776
Q ss_pred -ccEEEEeeeeeCCceEEEEE--ecCCeEEEEECCC
Q 001386 486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 518 (1088)
Q Consensus 486 -~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~ 518 (1088)
.++...... ..+.++..+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 444444432 233456666 6677777776653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.34 E-value=11 Score=42.42 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=42.2
Q ss_pred EEEEcCCCCEEEEEeC--CeEEEEEcCcc--eeeeeeecCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 937 HIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 937 ~~~fs~dg~~l~~~~d--~~i~vwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
-++|+|....+|++++ +.|.||.+... ..++++.-..+.+...++|-.|+-.|+..+.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 5899999999999755 67999987643 2344444445777888999888877665543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.4 Score=47.68 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=104.3
Q ss_pred EEEecCCCEEEEEeC-----------CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001386 804 FALSKNDAYLFSASG-----------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~ 872 (1088)
++..|-|.-+|+..+ -.|+||++. |..+..+.-..+.+..+.|+. + .-|++-..+|+++||++..
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g- 113 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG- 113 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-
Confidence 444555555555532 237888875 555555443444888999996 4 4566678999999999863
Q ss_pred eeeee--e--ccccCCeeEEEECCCCCEEEEEeCCCcEE-EEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC--
Q 001386 873 EVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT-- 945 (1088)
Q Consensus 873 ~~~~~--l--~~h~~~V~~l~~s~dg~~las~s~Dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~-- 945 (1088)
+.+.. . +.....|..+.|..+|-.+.+ .+|.+. +-+.+... ...+....+... .-.+...-++++
T Consensus 114 e~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~---~~~~~diP~~~~---~~~~Wt~~~~~~~~ 185 (829)
T KOG2280|consen 114 EFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK---LRKMPDIPYNEL---PKSCWTVFQPHRQS 185 (829)
T ss_pred hhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch---hhhCCCCCCccC---CCcceeEecCCCcc
Confidence 32222 1 122334555555556644443 334333 33333211 111111111111 112222222221
Q ss_pred EEEEEeCC--eEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 946 RFLLVHET--HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 946 ~l~~~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
.++..-+- ...++...++......+......+..+..||+.++|+--..+|.|.+-+.+..+..+.+...
T Consensus 186 ~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 186 TILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred eeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 11111110 11222222221111111111367888999999999999999999999999998888887733
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.19 E-value=7.9 Score=39.99 Aligned_cols=207 Identities=13% Similarity=0.112 Sum_probs=117.5
Q ss_pred CeeEEEEecCCCEEEEEe-CCcEEEEEcC-------CceeEEEecC-----CCCCeEEEEEcCCCCcE------------
Q 001386 800 AVPCFALSKNDAYLFSAS-GGVISLYIVM-------TFKTILTIMP-----PSPTATSLAFNPHDNNV------------ 854 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-dg~i~iwd~~-------~~~~~~~~~~-----~~~~i~~l~~sp~d~~~------------ 854 (1088)
....++++|.+.+-++.. .+...+||.. ....+.++.. .....+.+.|+. ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 346799999987777665 6789999986 1222333332 123567787775 2223
Q ss_pred EEEEeCCCeEEEEEcCCcee-----eeeecc-ccCCee-EEEECCC--CCEEEEE-eCCCcEEEEEcCCCceeeeeee--
Q 001386 855 IAIGMDDSTILIYNARSSEV-----ISKLEG-HSKRVT-GLVFSDA--LNILVSS-GGDAQIFVWDVDGWGIQTCRSL-- 922 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~~~-----~~~l~~-h~~~V~-~l~~s~d--g~~las~-s~Dg~i~iwd~~~~~~~~~~~~-- 922 (1088)
++.+++||+|.=|...-+.. ...+.. ..+.|+ .+++... +.+|..+ -..++|.++|-.-......-..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 45678999999998533221 122221 123343 4565533 4555444 4678899988654221100000
Q ss_pred -ecCCCCccCCCCeEEEEEcCCCCEEEE-E-------------eCCeEEEEEcCcceeeeeee-cCCCcCEEEEEEee--
Q 001386 923 -QTPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC-- 984 (1088)
Q Consensus 923 -~~~~~~~~~~~~v~~~~fs~dg~~l~~-~-------------~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~-- 984 (1088)
..+.+... ..+. .-.+++.++ + .-|.|-+||.. |..++++. .+.-.....|+..|
T Consensus 183 P~iPagyAP-----FnIq-nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 183 PALPAGYAP-----FNVQ-NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCC-----cceE-EECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 00111110 0110 012333333 2 23579999976 66666542 33344556667654
Q ss_pred ----CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 985 ----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 985 ----dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
.|.+|+---.||+|.++|..+|..+..+..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 677888777899999999999998877763
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.097 Score=60.35 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=84.7
Q ss_pred ecccCCCCceeeeec----CCCCeEEEEEcccCcEEEEecC--CCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~s----pdg~~lla~g~~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.++|-+++|-.++|- |.+.. + -|...|||+. .|+......+. ....-...+.-+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~~-~-----vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGRR-L-----VGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV 186 (1283)
T ss_pred HHhcCCCCcccccccccCChHHHH-H-----hhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence 345777788888883 44431 2 2788899986 34433221111 122233444556
Q ss_pred EECC---CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEE-----------ecCCCCcEEEEEEeCCCcEE
Q 001386 403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-----------FSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 403 ~~s~---dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~d~~~l~l~s~s~d~~i~ 468 (1088)
.|.| +..++..+-.+++|++.++++... . .+.+|...+..++ .||||+ .++.+..||.++
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG 260 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence 6655 678888888889988877776432 1 3557887777665 489999 899999999988
Q ss_pred EEeCC-----CCceeEEeccCC
Q 001386 469 VWDAV-----TGSRTYSFEGHG 485 (1088)
Q Consensus 469 vwd~~-----~~~~~~~~~~~~ 485 (1088)
+|.+. .-+|++..+.|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 88653 334666677776
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.4 Score=50.25 Aligned_cols=153 Identities=8% Similarity=-0.005 Sum_probs=73.4
Q ss_pred CceEEEEEecC-----CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC--ceeEEEEeCCCCceeEE
Q 001386 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~ 570 (1088)
++...+.|+.+ ..+..||..+..-......+.......+..-+++..+.||....+ ...+..||+.+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45677777765 246677766543222111111111111223456666666632221 24588899887654332
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
-.... .... .++ ...++..++.|+.+ ..+.+||..+++....-..... .....+..-++++++.|+.
T Consensus 422 ~~~p~-~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence 21111 0011 122 22345555666532 2388889887765433221111 1111122236777777765
Q ss_pred C-----CcEEEEeCCCCC
Q 001386 643 E-----NRIKILETPESN 655 (1088)
Q Consensus 643 d-----g~i~iwd~~~~~ 655 (1088)
+ ..+.+||..+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467778777653
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=9.5 Score=42.58 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=108.3
Q ss_pred EecCCCEEEEEeCCcEEEEEcCCceeEEEecCCC--CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-
Q 001386 806 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 882 (1088)
Q Consensus 806 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~- 882 (1088)
..-+++.++...+|.|.-.|..+++.+....... ..+..-.+.. +|+ +..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3446666666668888888888888665443221 2233333333 565 7778899999999998999887776555
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 960 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~--d~~i~vwd~ 960 (1088)
-.+..-..-.++..++ ++.++.+.-.+-.+++..-.......... .+..-....++..++... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222332222 23566666666665543221111110000 011111134444444433 456777788
Q ss_pred CcceeeeeeecCCCcCEE---EEEEee-----CCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 961 EELTCLKQWFPISSVPIS---QATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 961 ~~~~~~~~~~~~h~~~v~---~l~fs~-----dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
.+|.........+...-+ ...... .+.-+..++.++.+...+..+|+.+.+....
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 788777663221111100 011111 1222356777888999999999999887743
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.7 Score=50.56 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=76.8
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec-cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC----
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---- 517 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---- 517 (1088)
...-+.-|.-++ ..+.-+...++.|||...+.....-. ...+.|.++.|...++++.+++.+..+.|.++--.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 34444445589999998887554332 35789999999999999999999999999998431
Q ss_pred -CCC----ceE--EecC-CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 518 -SLG----ARV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 518 -~~~----~~~--~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
... ... .+.. ..++|....|.++|..++.++ +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 111 111 1222 335788999999998887764 24778774
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=93.52 E-value=10 Score=40.17 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=104.3
Q ss_pred eeEEEEecCCCEEEEEeC-------------CcEEEEEcCCceeEEEecCC------CCCeEEEEEcCCCC----cEEEE
Q 001386 801 VPCFALSKNDAYLFSASG-------------GVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI 857 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~d-------------g~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~----~~las 857 (1088)
|..+.+.+++++-+.-+. -+|.+||+.+++.++++.-+ .+....+++...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665554321 15889999999988876532 34567777765222 24443
Q ss_pred Ee-CCCeEEEEEcCCceeeeeeccc-------------------cCCeeEEEECC---CCCEEEEEeCCCcEEEEEcCCC
Q 001386 858 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 858 g~-~dg~i~lwd~~~~~~~~~l~~h-------------------~~~V~~l~~s~---dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.. ..+.|.|+|+.+++.-+.+..+ ...+..++.+| ||++|....-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 3358999999998754444322 12366677765 777777666544 356665542
Q ss_pred ceeee-----e----eeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcce---eeeeee-cCC-CcCEEE
Q 001386 915 GIQTC-----R----SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQ 979 (1088)
Q Consensus 915 ~~~~~-----~----~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~---~~~~~~-~~h-~~~v~~ 979 (1088)
..... . .++.. |... .....++++++|.+..+ ...+.|..|+..+.- ....+. ... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 11110 0 01111 0000 13567899999998888 577899999988621 111111 122 456788
Q ss_pred EEEee--CCCEEEEE
Q 001386 980 ATFSC--DCRMVFTS 992 (1088)
Q Consensus 980 l~fs~--dg~~l~s~ 992 (1088)
+.+.+ +|.+.+..
T Consensus 239 ~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEE-T--TS-EEEEE
T ss_pred eeeccccCceEEEEE
Confidence 88888 77666554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.50 E-value=1 Score=54.01 Aligned_cols=146 Identities=8% Similarity=0.058 Sum_probs=94.9
Q ss_pred CCCeeEEEEecCCCEEEEEe--CC-cEEEEEcCCceeEE-----EecCC------CCCeEEEEEcCCCCcEEEEEeCCCe
Q 001386 798 QEAVPCFALSKNDAYLFSAS--GG-VISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST 863 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~--dg-~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~d~~~lasg~~dg~ 863 (1088)
.-.+..+...+|+...++.. +| .|..||+.+...-. .+..| .....++.|.|.=....++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44667778888887766654 33 58999987543221 12222 1234677787743345566778899
Q ss_pred EEEEEcCCce-eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 864 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 864 i~lwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
|++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|.-.-.......+....+ ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence 9888765432 223333 4456899999999999999999999988876653222222222222 24799999988
Q ss_pred CCCEEEE
Q 001386 943 DQTRFLL 949 (1088)
Q Consensus 943 dg~~l~~ 949 (1088)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.2 Score=45.86 Aligned_cols=145 Identities=8% Similarity=0.057 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc--eeeeee-ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001386 842 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 918 (1088)
Q Consensus 842 i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~ 918 (1088)
.+.+-|.. .++.|+ +...|.+.=|-+... ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 35566654 333333 333444555544321 111222 2356799999999999999999999999999985433111
Q ss_pred eeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 919 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 919 ~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
..... +......|...+|+.. .-+|...+..+-+|.+.....-......|...|.-..|.++.+.++-++
T Consensus 103 ~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQE----CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHH----hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 11111 1111124788888877 6667666777777776644433334566788888889999887754443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=3.3 Score=49.02 Aligned_cols=188 Identities=10% Similarity=-0.003 Sum_probs=93.8
Q ss_pred cCCCEEEEEe-C------CcEEEEEcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCce
Q 001386 808 KNDAYLFSAS-G------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSE 873 (1088)
Q Consensus 808 ~dg~~l~~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~i~lwd~~~~~ 873 (1088)
.++..++.|+ + ..+..||..+.+-... +..+......+++ ++++++.|+.++ .+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666664 2 2477888776543221 1111122222222 677888888763 57788887654
Q ss_pred e--eeeeccccCCeeEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC
Q 001386 874 V--ISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 945 (1088)
Q Consensus 874 ~--~~~l~~h~~~V~~l~~s~dg~~las~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~ 945 (1088)
- ...+.........+ .-++++.+.||.+ ..+..||..+.+-.....+ +... ..+.+...+++
T Consensus 370 W~~~~~lp~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r------~~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNPCVV--NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISH------YGGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccceEE--EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Cccc------cCceEEEECCE
Confidence 2 22222111111112 2366777777732 3578889887543221111 1111 11223334666
Q ss_pred EEEEEe-C--------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceE
Q 001386 946 RFLLVH-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1009 (1088)
Q Consensus 946 ~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~ 1009 (1088)
..+.|. + ..+.+||..+++-...........-.++ ...+++.++.|+.+ +.|.+||..+....
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 666642 1 2388899887653222111111111111 22377777777654 46888888877643
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.1 Score=51.83 Aligned_cols=118 Identities=19% Similarity=0.351 Sum_probs=78.8
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC--CC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS--PD 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s--~d 407 (1088)
+...-....-+.-|.-++ +.++.+...++.|||...+....... + ...+.|.++.|. ||
T Consensus 25 ~~T~i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~-----------------f-~~~~~I~dLDWtst~d 85 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEES-----------------F-SEDDPIRDLDWTSTPD 85 (631)
T ss_pred EecCCCCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeee-----------------e-cCCCceeeceeeecCC
Confidence 333334566666666676 56666666789999999887554422 2 357889999996 58
Q ss_pred CCEEEEEeCCCEEEEEEc-----cCC-C---cccceeEeccCC-CCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 408 GSLLGVAYSKHIVQLYAY-----HGG-S---DARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~-----~~~-~---~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
|+.+.+.+..+.|.+|.- ... . .++.+ .+..|+ .+|.+..|.++|. ++.|+ .+.+.|+|
T Consensus 86 ~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G~---LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 86 GQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI-DISSHTPHPIGDSIWLKDGT---LVVGS-GNQLFVFD 154 (631)
T ss_pred CCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE-EeecCCCCCccceeEecCCe---EEEEe-CCEEEEEC
Confidence 999988889999988743 111 1 12222 234454 5899999999997 44343 45688887
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.02 E-value=27 Score=42.42 Aligned_cols=121 Identities=12% Similarity=-0.040 Sum_probs=75.6
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-ceEEEeccc
Q 001386 938 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1015 (1088)
Q Consensus 938 ~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~ 1015 (1088)
.+..|-..++++|....+++||+-..+.++.....+ ...|+.+++ .+..+++|.....|.++..... ..+..+. .
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence 466677778888888999999999888777655444 556666665 4567888876666665444433 2222332 1
Q ss_pred cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCccccCCCC
Q 001386 1016 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070 (1088)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~~~~~~~~ 1070 (1088)
... .-+..++.+- |.+.++.|..=|.+.+-.++..-.+-....|.+
T Consensus 1016 D~~-------pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~ 1061 (1205)
T KOG1898|consen 1016 DPV-------PRHVTALELL--DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTE 1061 (1205)
T ss_pred CCc-------cceeeEEEEe--cCCceeeccccCcEEEEECCCcchhhhccCCcc
Confidence 111 1223334333 567899999989999988876555444444433
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.8 Score=47.40 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=71.0
Q ss_pred CcCEEEEEEeeCCCEEEEEeCCCcEEEEE---------cCCCc--eEEEeccccccCCCCccccccceEEEECCCC--CC
Q 001386 974 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1040 (1088)
Q Consensus 974 ~~~v~~l~fs~dg~~l~s~s~dg~v~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d--~~ 1040 (1088)
.-.|..+..|+.|..++-++.+|.+.++= +..|+ ..|+..+.....- .+...+....++|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-tss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-TSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-ccCCceeeeeccccCCccCCc
Confidence 34577888899999999999998655432 33442 3344332211100 11233455678899943 35
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCccccCCCCccCCCCCCCccC
Q 001386 1041 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEG 1082 (1088)
Q Consensus 1041 ~l~~~~~dg~v~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1088)
.|..-..|..+++|++++..-.|..+++.-+.++....-|=|
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~Si~sFG 223 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVSILSFG 223 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCCcCCCCccceeeccC
Confidence 677788999999999999998999888877776655544433
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.90 E-value=3.7 Score=45.62 Aligned_cols=147 Identities=9% Similarity=0.071 Sum_probs=77.6
Q ss_pred CCeeEEEECCCCCEEEEEe-----------CCC-cEEEEEcCC--CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 883 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s-----------~Dg-~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
.....|+|.++|+++++-. ..+ .|.+++-.. ++......+.. +. .....++|.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--EL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CC----CCccceeEecCC-EEE
Confidence 3456789999998877653 123 566665432 22222222221 11 135789999999 555
Q ss_pred EEeCCeEEEE-EcCc-------ceeeeeeecC----CCcCEEEEEEeeCCCEEEEEeCC-------------------Cc
Q 001386 949 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSFVD-------------------GT 997 (1088)
Q Consensus 949 ~~~d~~i~vw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~s~s~d-------------------g~ 997 (1088)
+. ...|..| |... .+.+..-+.. +......++|.|||.+.++-+.. |.
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 43 4445544 4431 1122221211 23457789999999876655521 33
Q ss_pred EEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCC
Q 001386 998 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1049 (1088)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg 1049 (1088)
|.-++..+++.. .+. . .--.+..++|+| +|+++++-..++
T Consensus 166 i~r~~pdg~~~e-~~a------~----G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 166 LFRYNPDGGKLR-VVA------H----GFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEEecCCCeEE-EEe------c----CcCCCccceECC-CCCEEEEccCCC
Confidence 444444444321 111 1 112356689999 788877654444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.8 Score=46.40 Aligned_cols=158 Identities=10% Similarity=0.078 Sum_probs=97.0
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeE-EEec-CCCC----CeE-EEEEcCCCCcEEEEEeCCCeEEEE-E
Q 001386 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 868 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~sp~d~~~lasg~~dg~i~lw-d 868 (1088)
....+..+-..|||+.+.+-+..++.++++.+.... +++. ...+ .|+ ++..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 455677888999999999988889999998754322 1111 1111 122 222233 67788889999988877 4
Q ss_pred cCCc-e----eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 869 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 869 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
+..+ . .+..++-...++.-+.--.+.+-+++-+..|++.++.....+ .+-..... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~-----~lL~~~~~----~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK-----LLLFERAY----QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc-----ceehhhhh----cCcceeeeCcc
Confidence 4332 2 112222222333333333344557778888888887655422 11111111 13678999999
Q ss_pred CCEEEEEeCCeEEEEEcCcce
Q 001386 944 QTRFLLVHETHLAIYEAEELT 964 (1088)
Q Consensus 944 g~~l~~~~d~~i~vwd~~~~~ 964 (1088)
+.++++-..++++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999877543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.29 E-value=8.6 Score=37.79 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=68.2
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcC--CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC------eEEEE---E
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---N 868 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------~i~lw---d 868 (1088)
....++.+..+.++++++...|.+|++. ..+...++..- +.|..++++. .|++|++--.+. .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 4445555554555555678889999987 44556666644 7899999999 799999853322 55664 2
Q ss_pred cC--Cceee-eeeccc---------------------cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 869 AR--SSEVI-SKLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 869 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.. ..+.+ .++-|| +.++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22 11111 122232 23566777766444444454 456999998763
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.25 E-value=4.2 Score=47.82 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=94.8
Q ss_pred CCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEE
Q 001386 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 889 (1088)
Q Consensus 810 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~ 889 (1088)
+.+++++..+.|.||+........ ...++..+...| .+ +...|+.+..|- ..|+ |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788999999999999986432211 001112222222 11 122343333332 1122 33333
Q ss_pred EC--CCCCEEEEEeCCCcEEEEEcCCCc---------ee--eeeeeecCCCCccCCCCeEEEEEc--CCCCEEEEEeCC-
Q 001386 890 FS--DALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET- 953 (1088)
Q Consensus 890 ~s--~dg~~las~s~Dg~i~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~~~fs--~dg~~l~~~~d~- 953 (1088)
.. -+...|+.|.+||.|.+|.+++-- .. ..+..-.+.-+.......+++++. ...++||+++++
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 32 245678888889999999763200 00 000000011111122468999998 888889987554
Q ss_pred eEEEEEcCc--ceeeeeeecCCCcCEEEEEEeeCC---C---EEEEEeCCCcEEEEEc
Q 001386 954 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 954 ~i~vwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~s~s~dg~v~vwd~ 1003 (1088)
.|.||-... .+........|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 566665443 222111122357889999998744 2 7888889999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.98 E-value=17 Score=37.68 Aligned_cols=214 Identities=11% Similarity=0.105 Sum_probs=122.6
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCC------CCc-eeEEecc-----CCccEEEEeeeeeC------Cc----e
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TGS-RTYSFEG-----HGAPVYSLCPHAKE------NI----H 500 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~------~~~-~~~~~~~-----~~~~v~~~~~~~~~------~~----~ 500 (1088)
.-+.|+|+|.+. +-++...-+...+||.. ..+ .+-++.. .....+.+.|+... ++ .
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 66666667889999976 122 2333332 12345555554221 11 2
Q ss_pred EEEEEecCCeEEEEECCCCCc-----eEEecCC-CC-ceEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCcee--E
Q 001386 501 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP-GL-GCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 569 (1088)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~-~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 569 (1088)
.++.+++||+|.-|...-... ...+... .. -...+++.. .+.+|+.+-. ..++|.++|-.-.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478889999999997432222 2223221 22 234455543 3667766643 2566888885433221 0
Q ss_pred EEeccc--ccccc-----------EEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec----
Q 001386 570 TYQGLQ--LQHNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 632 (1088)
Q Consensus 570 ~~~~~~--~~~~~-----------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 632 (1088)
.+.... ..-.+ |+...-.++++.=+.+..-|.|-+||. .|+.++++...+....-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 011100 00000 111111222222333445578999997 578888887666666667788766
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 001386 633 --NGTLLAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 633 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
.+.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 467777777799999999998876665553
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.97 E-value=11 Score=36.40 Aligned_cols=175 Identities=15% Similarity=0.073 Sum_probs=95.5
Q ss_pred EEEEEeCCC--cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEE
Q 001386 457 SVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1088)
Q Consensus 457 ~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 534 (1088)
++.+.+.-| .|++||+.+|+.+.+-.-....+..=-.....| .+-.-.-.+|.-..+|.++.+....+...+.. +
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W- 134 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W- 134 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence 566655443 699999999998865542211111111111112 23334456788888988887776655544432 1
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc--ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
....|++.|+.+ +|..+++.-|+++.....+...... .-..++-+.|- +|...+-.=.+..|...+.++|+.
T Consensus 135 -gLt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 -GLTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred -eeecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 234566666665 4466788888876554444332110 01233444443 344444444455566667777777
Q ss_pred eEEEeCCC----------CCCCCceEEEecCC-CEEEEE
Q 001386 613 LTTIDAGG----------GLPENPRICFNKNG-TLLAVI 640 (1088)
Q Consensus 613 ~~~~~~~~----------~~~~v~~v~~s~~~-~~l~~~ 640 (1088)
+..+...+ +....+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66554321 12235678888876 455554
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.86 E-value=16 Score=37.06 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=126.8
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001386 841 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 841 ~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~ 920 (1088)
.-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345577788 78888888888888888888888766555555556778888999887765443 34445555544222
Q ss_pred eeecCCCCccCCCCeEEEEEcCCCCEEEEEeCC----------eEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEE
Q 001386 921 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 990 (1088)
Q Consensus 921 ~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~----------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 990 (1088)
+.....+.. .......|.++|++-.++..| .|++|+.. .......++..|||..-+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 222222222 357789999999999886432 35555543 244566789999999888
Q ss_pred EEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCcc
Q 001386 991 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1064 (1088)
Q Consensus 991 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~~ 1064 (1088)
+.-.++.|..-|-.++... .+.....+..+ +..+--+| -|..-++....|.++.+|.+... |.
T Consensus 205 aslagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdp-ig~~wittwg~g~l~rfdPs~~s--W~ 267 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WI 267 (353)
T ss_pred EeccccceEEcccccCCcc-eecCCCccccc-------ccccccCc-cCcEEEeccCCceeeEeCccccc--ce
Confidence 7777888888887777322 22212211222 12243456 57888888888899988886644 64
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.69 E-value=10 Score=47.12 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=95.3
Q ss_pred eCCCeEEEEEcCCceeeeeeccccCCeeEEEE--------CCCCCEEEEEeCCCcEEEEEcCCCceeeeee-----eecC
Q 001386 859 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS-----LQTP 925 (1088)
Q Consensus 859 ~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~--------s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~-----~~~~ 925 (1088)
+.|+.+.+|+..++.....+.+-+..|..|.. -|.=++|...+.--.|.++-+.-.+...... ++..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998878888887777777654 3333555555555567777665433211111 1111
Q ss_pred CCCccCCCCeEEEEEcCCCCEEEEEeCCeEE--EEEcCcc---e-eee----------------eeecCCCcCEEEEEEe
Q 001386 926 DGVMTLAPSETHIQFHKDQTRFLLVHETHLA--IYEAEEL---T-CLK----------------QWFPISSVPISQATFS 983 (1088)
Q Consensus 926 ~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~--vwd~~~~---~-~~~----------------~~~~~h~~~v~~l~fs 983 (1088)
.. +..|.++....+|+.+.+|.||.|+ +|...+| + |-. ++...+..+|..++..
T Consensus 176 ~d----g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VD----GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cC----CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 11 1358899999999999999998544 2233322 1 111 1112457789999998
Q ss_pred eCCCEEEEEeCCCcEEEEEcCC-Cce
Q 001386 984 CDCRMVFTSFVDGTLSIHEASN-LEV 1008 (1088)
Q Consensus 984 ~dg~~l~s~s~dg~v~vwd~~~-~~~ 1008 (1088)
..-..+.+-+..|+|++|++.. |..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred cccceeeeeccCceEEEEEccCCCcc
Confidence 8778889999999999999988 443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.2 Score=47.86 Aligned_cols=103 Identities=11% Similarity=0.149 Sum_probs=74.4
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
..++|.++.||+|.+ ++|+--.+.+|.+.+....+....... . .+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~------~---------ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ------E---------CKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH------H---------hccCcceeEEEEEecC-eeEE
Confidence 345999999999998 899999999999999854443321110 0 1223456889999865 7788
Q ss_pred EEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 455 (1088)
.....| +.+|-+...+ +..+..+.|...|.-..|.++.+-
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccce
Confidence 777777 7888776543 333345678889999999999884
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=27 Score=38.95 Aligned_cols=151 Identities=9% Similarity=0.036 Sum_probs=85.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCc--eeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~ 920 (1088)
..+..++ ++.+++.|..-..++-||-... +.+ ... ....++++.|.+++..++++ .+|.+ +|..+.++.-...
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~-~~~-~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPH-NRA-SARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCCCCcceEEe-cCC-CccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 4455667 6777776654433333442211 111 222 34568999999999888755 56654 4444443211000
Q ss_pred eeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeee--cCCCcCEEEEEEeeCCCEEEEEeCCCcE
Q 001386 921 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVDGTL 998 (1088)
Q Consensus 921 ~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~s~s~dg~v 998 (1088)
.+...... .....+..+.|.+++..++++..|.+.... ..|+.-.... ..-......+.|.++++-.++| .+|.|
T Consensus 317 ~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 317 DFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred ceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 11111100 001248899999999999999888776654 3444322222 2224578899998877766654 78877
Q ss_pred EEE
Q 001386 999 SIH 1001 (1088)
Q Consensus 999 ~vw 1001 (1088)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.45 E-value=15 Score=41.29 Aligned_cols=272 Identities=16% Similarity=0.083 Sum_probs=135.4
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|.++.|.-.|. +-.|+.|| +..+|..+|+.+..... ....+|..+..+-.| .|.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RLWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cEEEEe
Confidence 789999999997 34556655 66777777776643110 012456656555545 456677
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccCC--ccEEEEe
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC 492 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~--~~v~~~~ 492 (1088)
.+| |.+.+.++.+..... ..-..+.|..+.=..+|. +-.|+..|..+ .....+...... +-|. ..|.++.
T Consensus 224 dqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeeccccee-EecCCCCccccccccCCcccccccee
Confidence 777 788777763211100 011223454444444444 44455554332 233333322222 2222 2333333
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCceeEE
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1088)
. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcEEEE
Confidence 3 3343 456666666666543321111111111122222222222 111111111 122355666677777766
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
..... ...|+.+++..+ ..+-.++...-+..|+..+ +..+...... ....|..+.=.|+++ |..|+.+|.++.
T Consensus 370 v~q~R--g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 44433 456777777774 4555566554466677666 3333333322 223577777788887 777888776553
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.73 Score=31.74 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=27.0
Q ss_pred CCeEEEEECCC-C--CEEEEEeCCCEEEEEEccCC
Q 001386 397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 428 (1088)
Q Consensus 397 ~~V~~l~~s~d-g--~~las~~~dg~i~vwd~~~~ 428 (1088)
++|.++.|||+ + ++||.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58999888899999999863
|
It contains a characteristic DLL sequence motif. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=10 Score=43.96 Aligned_cols=185 Identities=11% Similarity=-0.016 Sum_probs=92.2
Q ss_pred cCCCEEEEEe-C-----CcEEEEEcCCceeEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCce--ee
Q 001386 808 KNDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VI 875 (1088)
Q Consensus 808 ~dg~~l~~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~--~~ 875 (1088)
.++.++++|+ + ..+..||..+.+-.. .+.........++ - ++.+.++|+.++ .+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556664 2 247778877654222 2221222222222 2 678888888643 68888876543 22
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d 952 (1088)
..+.........++ -+|++.+.||.++ .+..||..+..-.....+.... -...+..-+|+..++|
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--
Confidence 33322121122222 3677888887654 4678888765432221111111 1122334566666665
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCce
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1008 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~ 1008 (1088)
|.+.+||..+++=.......+...-.++ ..-+|+..+.|+.+ .+|.+||..+++.
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 3567788776542211111111111122 23477777778754 3466777666553
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.06 E-value=10 Score=36.61 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=60.5
Q ss_pred CCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeE--EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC
Q 001386 809 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 809 dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
+|.++.+.+ ...|++||+.+++.+..-.-....+. .+.-. +..+.+---.+|.-.++|..+-+++..+. -.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666654 45699999999998876543322221 11111 33455556678999999999988877665 233
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
.=..++ .|+.-|+.++...+++.-|-++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 334444 3555566655555566655544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.25 Score=57.18 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=100.3
Q ss_pred CcEEEEEcC--CceeEEEe-----cCCCCC---eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEE
Q 001386 819 GVISLYIVM--TFKTILTI-----MPPSPT---ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 888 (1088)
Q Consensus 819 g~i~iwd~~--~~~~~~~~-----~~~~~~---i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l 888 (1088)
|.+.+||+. .|+....+ ...... |.-+-|-+ +.-++..+..+++|++....+... ..+.+|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 567788765 34332222 222223 33333445 557888888899999877665432 5556687766665
Q ss_pred E-----------ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC-------C--EEE
Q 001386 889 V-----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-------T--RFL 948 (1088)
Q Consensus 889 ~-----------~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg-------~--~l~ 948 (1088)
+ .||||..+|.++.||.++.|.+.-......+|+..-+.|.. .+-.|.-|.... . +++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 4 58999999999999999999876433333444443333332 122222244332 2 233
Q ss_pred EEeC--CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE------------EEEEeCCCcEEEEEc
Q 001386 949 LVHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM------------VFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 949 ~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~------------l~s~s~dg~v~vwd~ 1003 (1088)
++.| ..+++|.....+|+-.+. ...|..|. -+||+. +++-+-+++|.+|.-
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 3444 458999988887763322 22333333 233331 233455778888853
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.02 E-value=19 Score=38.22 Aligned_cols=167 Identities=11% Similarity=0.074 Sum_probs=91.2
Q ss_pred cEEEEeCCCCceeEEecc------CCccEEEEeeeeeCC----ceEEEEEecCCeEEEEECCCCCceEEecCCC------
Q 001386 466 TIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 529 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 529 (1088)
.|.+||+.+++.++++.- ..+.+..+.+...+. +...++-+..+-|.++|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889999998877643 245677777765332 3445555556789999998876544332211
Q ss_pred -------------CceEEEEEcc---CCCEEEEEeeCCCCceeEEEEeCCC-----Cc---------eeEEEeccccccc
Q 001386 530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 579 (1088)
Q Consensus 530 -------------~~v~~~~~s~---~g~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~ 579 (1088)
..+..++.+| +|+.|+.....+ -.+|.+.+ .. .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1255566654 666776655322 12222211 10 11111 111 13
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC---eeeEEEeCCCC-CCCCceEEEec--CCCEEEEE
Q 001386 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDAGGG-LPENPRICFNK--NGTLLAVI 640 (1088)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~~ 640 (1088)
....++++++|..+++--..+.|..|+..+. +....+..... ......+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 4567888899988888889999999998761 12222222222 33445677777 55544443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.85 Score=31.44 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCC--cEEEEEeCCCeEEEEEcCC
Q 001386 840 PTATSLAFNPHDN--NVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 840 ~~i~~l~~sp~d~--~~lasg~~dg~i~lwd~~~ 871 (1088)
+.+.++.|||..+ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 6999998999999999985
|
It contains a characteristic DLL sequence motif. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.36 E-value=12 Score=33.52 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=68.5
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-----CCCEEEE
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGV 413 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-----dg~~las 413 (1088)
.-.|..... -|++++.-|.|.|.+.......... .-....+-.-...|++++-.+ +...|+.
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~------------~~~~i~~LNin~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR------------QDSDISFLNINQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc------------ccCceeEEECCCceEEEEEEecCCCCCcCEEEE
Confidence 334555555 4777778899999988654322110 000001222456788876544 3456777
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC---CCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
|+.. .+..||+.....+. ++.-...|.++.+-. .... +++.|+ +..|.-+|.+..+...
T Consensus 70 Gt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~-l~ivGG-ncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 70 GTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP-LVIVGG-NCSIQGFDYEGNEIFW 131 (136)
T ss_pred eccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc-EEEECc-eEEEEEeCCCCcEEEE
Confidence 6554 59999999876543 334456777777622 1122 444444 6778878754444333
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.10 E-value=36 Score=37.98 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=103.9
Q ss_pred EEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc-cEE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVY 489 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~v~ 489 (1088)
+.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 333467777777777777643211111 1111222223333776 77788899999999889999887765551 111
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC---CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.-.+ ..+ ..+..++.+|.+...|..++.......... ..+..-....++. ++.+..+ - +..+.-.|..+|.
T Consensus 147 ~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 147 SPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred cCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCc
Confidence 1111 112 244444467888888877777766544332 1111111122332 3333221 1 3357777777787
Q ss_pred eeEEEecccccc-ccEEEEEEeC-----CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 567 IKRTYQGLQLQH-NSVSVVHFDT-----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 567 ~~~~~~~~~~~~-~~v~~~~~~~-----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
..-......... ..+....... .+..++.++.++.+...|..+|+.+......
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 765543222000 0010000000 1223456777888999999999999888754
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=14 Score=42.81 Aligned_cols=148 Identities=9% Similarity=-0.018 Sum_probs=72.3
Q ss_pred CceEEEEEecCC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 498 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
++...+.|+.++ .+..||..+.+-......+.......+..-+|+..+.||.++. ...+..||+.+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 556777777543 5777876543222111111111112223346666666665332 3557789988765443211111
Q ss_pred cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC-----CcEEEEe
Q 001386 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 650 (1088)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd 650 (1088)
.......+ .-++...+.| |.+.+||..+++....-..... ....-+.--++++.++|+.+ ..+..||
T Consensus 397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 00111112 2344444445 3577899887765543322211 11222223367788888754 3566777
Q ss_pred CCCC
Q 001386 651 TPES 654 (1088)
Q Consensus 651 ~~~~ 654 (1088)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 6654
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.33 Score=44.48 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=48.0
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhccccccccccccc
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSK 132 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 132 (1088)
++|.++-+.||||+.+|..++|..|+++.-..+.....+..++|+.+....+..+++....
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~ 89 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKL 89 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHH
Confidence 9999999999999999999999999998655554445567788877777776666654333
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.89 E-value=4.6 Score=48.85 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=67.1
Q ss_pred CCeeEEEEecCC--CEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001386 799 EAVPCFALSKND--AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 876 (1088)
Q Consensus 799 ~~v~~~~~s~dg--~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~ 876 (1088)
....++.|.|.- ..++.-.|+.|++..+.-......--......+|++|+| .|+.+++|...|++.-|... ++...
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceee
Confidence 345566777643 233344588888887654332222222446789999999 89999999999999988754 44333
Q ss_pred eecc----ccCCeeEEEECCCCCEEEEEe
Q 001386 877 KLEG----HSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 877 ~l~~----h~~~V~~l~~s~dg~~las~s 901 (1088)
.+.+ ....|.+|+|-....+|++-+
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEEec
Confidence 3322 247899999987777777543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.78 E-value=17 Score=39.54 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=90.7
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCe------EEEEEcCC--c--ee-----eeeeccccC--------CeeEEEECCCCC
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EV-----ISKLEGHSK--------RVTGLVFSDALN 895 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~------i~lwd~~~--~--~~-----~~~l~~h~~--------~V~~l~~s~dg~ 895 (1088)
-+.+..+.+.+.++. +++.+++|. ++.+++.. + .. ...+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788889863454 444566666 66665543 1 11 111222222 344788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeecCC---------CCccCCCCeEEEEEcCCCCEEEEE------eCC-
Q 001386 896 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD---------GVMTLAPSETHIQFHKDQTRFLLV------HET- 953 (1088)
Q Consensus 896 ~las~s~D------g~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~fs~dg~~l~~~------~d~- 953 (1088)
++++.=.+ ..|+.++.+ |...... ..+. ........+.+++++|||+.|.+. .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~--~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF--PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceE--ccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 88876666 667777766 3322111 1111 112233578999999999955542 232
Q ss_pred -e-------EE--EEEcCc-ceeeeeee---cC-----CCcCEEEEEEeeCCCEEEEEe-----CCCcEEEEEcCC
Q 001386 954 -H-------LA--IYEAEE-LTCLKQWF---PI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASN 1005 (1088)
Q Consensus 954 -~-------i~--vwd~~~-~~~~~~~~---~~-----h~~~v~~l~fs~dg~~l~s~s-----~dg~v~vwd~~~ 1005 (1088)
. ++ .||..+ +.....+. .. ....++.+.+-+|+++|+.-= ....++|+.+..
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 1 44 455554 32333321 11 357889999999999776432 234566665443
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=89.65 E-value=62 Score=40.09 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=104.6
Q ss_pred CCCCCeEEEEEc---CC---CCcEEEEEeCCCeEEEEE------cCC---------ceeeeeeccc---cCCeeEEEECC
Q 001386 837 PPSPTATSLAFN---PH---DNNVIAIGMDDSTILIYN------ARS---------SEVISKLEGH---SKRVTGLVFSD 892 (1088)
Q Consensus 837 ~~~~~i~~l~~s---p~---d~~~lasg~~dg~i~lwd------~~~---------~~~~~~l~~h---~~~V~~l~~s~ 892 (1088)
....+|..++|+ .. ..++|++ -....+.|+. +.. ..++..+..+ ..+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 355688888888 21 2245554 4455677776 111 1233444322 23567899998
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCCceeeeeeee---cCCCCc-cC---CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcce
Q 001386 893 -ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ---TPDGVM-TL---APSETHIQFHKDQTRFLLVHETHLAIYEAEELT 964 (1088)
Q Consensus 893 -dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~---~~~~~~-~~---~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~ 964 (1088)
+.+.||.....|...||++..........+. ...|.. .. ...-..+.|.++-+.|+++....+.++|+.+..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 4468999999999999999332222111111 112221 10 123457889999999999999999999999887
Q ss_pred eee-eeecCCCcCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCC
Q 001386 965 CLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 965 ~~~-~~~~~h~~~v~~l~fs~dg-~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
... .........|..+.-+++. .+++.- +...|...++.+.
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 644 2233346789999988873 333333 3456877788774
|
These proteins are found in fungi. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=89.45 E-value=17 Score=37.14 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=79.5
Q ss_pred EEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC---CceeEEEeccccccccEEEEEEeCC
Q 001386 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1088)
+||+.+.+...........+.+-++-+||+++.+++. .++...+++++..+ ..........-.....-..+..-+|
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 5676665544333333334455567789998888774 34666788888654 1111111110111223344556689
Q ss_pred CCEEEEEeCCC-cEEEEEcCC-CeeeEEE---e---CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 590 KDQILAAGDDH-VIKIWDMNK-VQLLTTI---D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 590 ~~~l~~~s~dg-~i~iwd~~~-~~~~~~~---~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
|+.++.|+... +..+|.... ......+ . ......--..+...|+|++++.+..+ -.|||..+++.+..+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 99999987664 345555422 1111111 1 01111122467788999999988765 4556877775544444
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.36 E-value=8 Score=47.94 Aligned_cols=172 Identities=14% Similarity=0.187 Sum_probs=101.1
Q ss_pred ccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
....+|+.++..+. |...=..+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-..
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 55778888877776 4434444555554443 3335679999999999665542 233334
Q ss_pred CeEEEE--------ECCCCCEEEEEeCCCEEEEEEccCCCcccce------eEeccCCCCEEEEEecCCCCcEEEEEEeC
Q 001386 398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1088)
Q Consensus 398 ~V~~l~--------~s~dg~~las~~~dg~i~vwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~s~ 463 (1088)
.|..+. |-|.=++|.+...--.|.++-+.-.+.-... ..+.-....|+++....+|+ ++. +|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence 444443 3333455555555555777765433221111 12222345789999888998 444 556
Q ss_pred CCcEEEEeC----CCC---c-e----------------eEEec-cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC
Q 001386 464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1088)
Q Consensus 464 d~~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1088)
|| .+|.+ ..| + | +-.+. .+..+|..+.+. .....+.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--cccceeeeeccCceEEEEEccC
Confidence 66 44432 111 1 1 11122 456789988884 3446888899999999999875
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.1 Score=30.51 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=23.4
Q ss_pred cccCCCCceeeeecCCCCeEEEEEccc--CcEEEE
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 362 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~d--g~i~iw 362 (1088)
+......-...+|||||++++.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344455778899999999888887777 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.29 E-value=23 Score=34.95 Aligned_cols=146 Identities=12% Similarity=0.164 Sum_probs=87.0
Q ss_pred cEEEEEeCCCeEEEEEcCC--ceeeeeeccccCCeeEEEECCCCCEEEEEeCCC------cEEE---EEcCCCceeeeee
Q 001386 853 NVIAIGMDDSTILIYNARS--SEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFV---WDVDGWGIQTCRS 921 (1088)
Q Consensus 853 ~~lasg~~dg~i~lwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg------~i~i---wd~~~~~~~~~~~ 921 (1088)
..|..+...+.|.+|++.. .+.+.+|..- +.|..+.++..|.+|+|-=.+. .+|+ |+....+.... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v-~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV-R 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE-E
Confidence 4555556778899999983 4566677644 7899999999999999874322 4555 44331111000 0
Q ss_pred eecCCCC------------------ccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCccee-ee-----ee---ecCC-
Q 001386 922 LQTPDGV------------------MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LK-----QW---FPIS- 973 (1088)
Q Consensus 922 ~~~~~~~------------------~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~-~~-----~~---~~~h- 973 (1088)
.... || .+....+.+++.-|-..-|++|.++++.+|.+..... .. .+ ...|
T Consensus 107 vRia-G~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRIA-GHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEEc-ccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 0000 10 0111356788888887788888899999998775544 11 00 1112
Q ss_pred -CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 974 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 974 -~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
+-.+..++|. +.|+|..+ +-.++|..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 3335566665 45888665 5567776653
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.68 E-value=48 Score=37.53 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=41.7
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
++...-+..+.|+|.|||+ +|++--..|.|++++..++....... +.........+....|+|+||-
T Consensus 24 ~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~------------l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFT------------LPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeec------------CCceeccCCCCceeeEEECCCc
Confidence 3344445889999999997 67665446999999866654221111 0110011136778999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=88.66 E-value=33 Score=39.60 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--CCCCccCCCCeEE
Q 001386 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMTLAPSETH 937 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~ 937 (1088)
..+...++|.. |.++..+.........+...++|.+++..+ ..++.+|+.... .....+.. ...|. .
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~~~l~~~~~~~HH-------D 194 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWEYDLPGGYYDFHH-------D 194 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEEEE--TTEE-B-S--------
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEeeecCCccccccc-------c
Confidence 44566666644 555555443222222266778998887665 678888887532 22222211 11133 4
Q ss_pred EEEcCCCCEEEEEe--------------CCeEEEEEcCcceeeeeeecC-C-------------------------CcCE
Q 001386 938 IQFHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPI 977 (1088)
Q Consensus 938 ~~fs~dg~~l~~~~--------------d~~i~vwd~~~~~~~~~~~~~-h-------------------------~~~v 977 (1088)
+..-|+|++|+.+. +..|..+| .+|+.+..+... | -..+
T Consensus 195 ~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~ 273 (477)
T PF05935_consen 195 IDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHI 273 (477)
T ss_dssp EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--E
T ss_pred cEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcccc
Confidence 77889999998754 23567777 777777664211 1 1347
Q ss_pred EEEEEee-CCCEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001386 978 SQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1016 (1088)
Q Consensus 978 ~~l~fs~-dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 1016 (1088)
.++.+.+ |+..++++-.-..|...|..++++...+....
T Consensus 274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 8899988 55555555444588889999999988877544
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.64 E-value=30 Score=35.18 Aligned_cols=226 Identities=10% Similarity=0.092 Sum_probs=124.7
Q ss_pred CCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCC
Q 001386 695 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEV 774 (1088)
Q Consensus 695 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 774 (1088)
.+||..-+++...+.+--.|..++ +...+.+. ....-..+...|||..-++-+..+..++
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tG---ev~~ypLg---~Ga~Phgiv~gpdg~~Witd~~~aI~R~-------------- 129 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATG---EVETYPLG---SGASPHGIVVGPDGSAWITDTGLAIGRL-------------- 129 (353)
T ss_pred CCCCceEEecCccccceecCCCCC---ceEEEecC---CCCCCceEEECCCCCeeEecCcceeEEe--------------
Confidence 455555555555555544444322 22222222 2344456677788776555444332222
Q ss_pred CCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCC----------cEEEEEcCCceeEEEecCCCCCeEE
Q 001386 775 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG----------VISLYIVMTFKTILTIMPPSPTATS 844 (1088)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~i~~ 844 (1088)
+.++.. +.++.++............|.+.|.+-+++..| .|++|+... ......
T Consensus 130 -----dpkt~e-vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyG 193 (353)
T COG4257 130 -----DPKTLE-VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYG 193 (353)
T ss_pred -----cCcccc-eEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcc
Confidence 222222 344445444456677889999999999988643 344444332 234567
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCce--eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001386 845 LAFNPHDNNVIAIGMDDSTILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 922 (1088)
Q Consensus 845 l~~sp~d~~~lasg~~dg~i~lwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~ 922 (1088)
++..| ||..-++.-.+..|-..|..++. .+-.-.+....-..+--+|.|+.-+|....+.+.-+|-.... ....
T Consensus 194 i~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s---W~ey 269 (353)
T COG4257 194 ICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS---WIEY 269 (353)
T ss_pred eEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---ceee
Confidence 88889 78777777777778777777662 222222212234455667888888887777777777766533 2222
Q ss_pred ecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcce
Q 001386 923 QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 964 (1088)
Q Consensus 923 ~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~ 964 (1088)
..+.... .-.++.....++.-+. ...+.|.-+|-.+.+
T Consensus 270 pLPgs~a----rpys~rVD~~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 270 PLPGSKA----RPYSMRVDRHGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred eCCCCCC----CcceeeeccCCcEEeeccccCceeecCcccce
Confidence 2222211 2446666666665554 344556556655433
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.56 E-value=41 Score=36.62 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=86.5
Q ss_pred CCCCeeEEEEec-CCCEEEEEeCCc------EEEEEcCC--c--eeE-----EEecCCCC--------CeEEEEEcCCCC
Q 001386 797 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 852 (1088)
Q Consensus 797 ~~~~v~~~~~s~-dg~~l~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~sp~d~ 852 (1088)
.-.....+.+.+ ++.++++.++|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345677889984 566666665555 55444432 1 111 11222221 334788866 78
Q ss_pred cEEEEEeCC------CeEEEEEcCCceeeeeec---------------cccCCeeEEEECCCCCEEEEEeC-----CC--
Q 001386 853 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 904 (1088)
Q Consensus 853 ~~lasg~~d------g~i~lwd~~~~~~~~~l~---------------~h~~~V~~l~~s~dg~~las~s~-----Dg-- 904 (1088)
.++++.-.+ ..|+.++.. |+.+..+. ..+....+|+++|||+.|.++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877666 788888876 65544331 13456889999999997666543 22
Q ss_pred c-------EEEEEcCCCc---eeeeeeeecCC-CCccCCCCeEEEEEcCCCCEEEE
Q 001386 905 Q-------IFVWDVDGWG---IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 905 ~-------i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
. ++|+..+... ......+.... ........++.+.+-+|+++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 5565555321 11222222221 00001236899999999998888
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.47 E-value=23 Score=39.07 Aligned_cols=152 Identities=9% Similarity=0.066 Sum_probs=92.4
Q ss_pred EEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC------CceEEEEEecCCeEEEEECC
Q 001386 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYD 517 (1088)
Q Consensus 444 v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~ 517 (1088)
+.-+....+...+++..|+....++-.|++.|+.+..+..|...+. .+.|.. +.+.| .|-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvV--qy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVV--QYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCccee--ecCCchhHHhcCccceE-EeecccceEEeccc
Confidence 3334444444555677788888899999999999999987776643 333321 12234 44555555555665
Q ss_pred CCCceEEecCCCC-----ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE
Q 001386 518 SLGARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 518 ~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1088)
............. ...+.. ....-++++++..++ |++||.-.-+....+++.. ..|..+..+.+|++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ 617 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKH 617 (776)
T ss_pred ccCCceeeeeehhccccccccccc-cccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcE
Confidence 5443222221111 222222 234457888776444 9999976555555566655 78999999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 001386 593 ILAAGDDHVIKIWDM 607 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~ 607 (1088)
+++.+.. .+.+-|+
T Consensus 618 ilaTCk~-yllL~d~ 631 (776)
T COG5167 618 ILATCKN-YLLLTDV 631 (776)
T ss_pred EEEeecc-eEEEEec
Confidence 9887753 4555554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.46 E-value=22 Score=42.10 Aligned_cols=111 Identities=14% Similarity=0.285 Sum_probs=71.6
Q ss_pred CeeEEEEec--CCCEEEEEe-CCcEEEEEcCC-------c----e---------eEEEecCCCCCeEEEEEc--CCCCcE
Q 001386 800 AVPCFALSK--NDAYLFSAS-GGVISLYIVMT-------F----K---------TILTIMPPSPTATSLAFN--PHDNNV 854 (1088)
Q Consensus 800 ~v~~~~~s~--dg~~l~~~~-dg~i~iwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--p~d~~~ 854 (1088)
.|+-+.+.. +...|+.+. ||.|.+|.+++ . + +...+. -...+.+++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 455554443 445566665 89999997632 1 0 001111 23467889998 6 6789
Q ss_pred EEEEeCCCeEEEEEcCCc--ee-eeeeccccCCeeEEEECCCC---C---EEEEEeCCCcEEEEEcC
Q 001386 855 IAIGMDDSTILIYNARSS--EV-ISKLEGHSKRVTGLVFSDAL---N---ILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~--~~-~~~l~~h~~~V~~l~~s~dg---~---~las~s~Dg~i~iwd~~ 912 (1088)
||+++....|.||-+... +. ...-..|...|-+|+|-++. . +|++++-.|.+.+|++.
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 999998888888866542 11 11111266779999997643 2 78889999999998883
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.39 E-value=26 Score=42.76 Aligned_cols=250 Identities=10% Similarity=0.034 Sum_probs=116.6
Q ss_pred EEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCC
Q 001386 740 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 819 (1088)
Q Consensus 740 ~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg 819 (1088)
.++..-|..+..|+.+|.+.+|.+........... +.... ..... -+..+|..+...+.-..+.+-+|+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~------~~~~~-~~~~~----~~kk~i~~l~~~~~~~~ll~l~ds 88 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL------VTETV-KFEKE----FSKKPINKLLVCASLELLLILSDS 88 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh------hcchh-HHhhh----hccchhHHHhhcchhcchheecCC
Confidence 34455678899999999999999876544221111 00000 00001 135677777777777788888899
Q ss_pred cEEEEEcCCceeEEEecCCCCCeEEEEEc--CC-CC--cEEEEEeCC-C-eEEEEEcCCceeeeeeccccCCeeEEEECC
Q 001386 820 VISLYIVMTFKTILTIMPPSPTATSLAFN--PH-DN--NVIAIGMDD-S-TILIYNARSSEVISKLEGHSKRVTGLVFSD 892 (1088)
Q Consensus 820 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s--p~-d~--~~lasg~~d-g-~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~ 892 (1088)
.|.++++.+.+..... .+-..+...+.. +- .+ .+.++.+.- . ....|+-+.+-.+..--+-.....+++|
T Consensus 89 qi~~~~l~~~~~~~~~-~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-- 165 (877)
T KOG2063|consen 89 QIAVHKLPELEPVPSG-TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW-- 165 (877)
T ss_pred cceeeecCcccccccc-cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc--
Confidence 9999988776652111 111111111110 00 11 122222211 1 2223333333222211111111222222
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCccee-eeeeec
Q 001386 893 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LKQWFP 971 (1088)
Q Consensus 893 dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~-~~~~~~ 971 (1088)
.|..+.++-.+....+|.-.++........... .. ..-..+.--+++..++.+.|+...+-|.. |.. .+....
T Consensus 166 ~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~-~~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~-G~~~~~~~l~ 239 (877)
T KOG2063|consen 166 CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMD-NE----SRKPLIKSLSDQSELLLGKDNIGVVVDLN-GIIAQRGTLV 239 (877)
T ss_pred cceeEEEeecceeEEEecCCCccccceeeeccc-cc----cCCCeEEEecCCceEEEccCceEEEEecC-CcccCCCceE
Confidence 344444443333334444443321111111110 00 01224555567777888888877777744 333 211110
Q ss_pred CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 972 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 972 ~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
- .....++.. +.-|+++- .++.|.||+..++.++.++.
T Consensus 240 w-s~~P~~v~~--~~PYlIa~-~~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 240 W-SEVPLSVVV--ESPYLIAL-LDRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred e-cccchhhcc--cCceEEEE-ccccEEEEeccCHHHhhccc
Confidence 0 111112221 34466654 46699999999998887774
|
|
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.48 Score=43.95 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=41.3
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhccccccccc
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~ 128 (1088)
++|.++-+.||+|+..|..++|..|+.+.-..+.....+..++|..+....+..+++
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~ 96 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENE 96 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccH
Confidence 899999999999999999999999999966555444455567776655555444333
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=48 Score=37.00 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=82.7
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcce
Q 001386 885 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 964 (1088)
Q Consensus 885 V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~ 964 (1088)
...+..++||.+++.+..-..++-||-... ....+..... ..++.+.|.+++..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 445667888887776554333333443321 0111222211 2578999999999999987777543 344443
Q ss_pred e-----eeeeecC-CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCC
Q 001386 965 C-----LKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1038 (1088)
Q Consensus 965 ~-----~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d 1038 (1088)
. ....... ....+..+.|.+|+..+++ +..|.+... .+.|+.-.........+. .+| .+.|.+ +
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-~ 381 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD-D 381 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC-C
Confidence 1 2211111 1345889999988776665 467766655 355554333221111111 133 577765 3
Q ss_pred CCEEEEEeCCCcEEEE
Q 001386 1039 PTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 1039 ~~~l~~~~~dg~v~~w 1054 (1088)
+...+.+.+|.|.-|
T Consensus 382 -~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 -KKGFVLGNDGVLLRY 396 (398)
T ss_pred -CceEEEeCCcEEEEe
Confidence 456667788888765
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.97 E-value=45 Score=36.34 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=54.4
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCcee-eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe------CCeEEEEEc
Q 001386 893 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 960 (1088)
Q Consensus 893 dg~~las~s~Dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~------d~~i~vwd~ 960 (1088)
++.+++.|+.++ .+..+|+.+.+.. ....+...... .-...+..-+++..+.+. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777543 4666777664421 01111111110 011122233566666642 135888898
Q ss_pred CcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCc----EEEEEcCCCceE
Q 001386 961 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEVQ 1009 (1088)
Q Consensus 961 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~----v~vwd~~~~~~~ 1009 (1088)
.+.+-...............+...+++..+.|+.++. +.+||..+....
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 7654222110011122233344557777788876642 467888877643
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=87.83 E-value=2.9 Score=40.53 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.7
Q ss_pred CCeEEEEECCCC------CEEEEEeCCCEEEEEEccC
Q 001386 397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 397 ~~V~~l~~s~dg------~~las~~~dg~i~vwd~~~ 427 (1088)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 4788889999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.75 E-value=2.2 Score=42.98 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=51.4
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeee-e-eecCCCCc----cCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 890 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-S-LQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 890 ~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~-~-~~~~~~~~----~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
+..++.+|+..+.+|.+++||+.+.+..... . ........ .....|..+.++.+|.-+++-.+|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 4457889999999999999999997643322 1 11111100 122468999999999999887778889998663
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=87.71 E-value=13 Score=42.72 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=52.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
...-++++.-+|.|.-++.+..||+|++|+......-+ +-....+-..+.|...| ++++..|..+.-|. +.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~d 83 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-ED 83 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-cc
Confidence 34567888888999999999999999999987654322 11223344556676554 56667787777786 45
Q ss_pred CceeEEe
Q 001386 475 GSRTYSF 481 (1088)
Q Consensus 475 ~~~~~~~ 481 (1088)
|-..+.|
T Consensus 84 gvvqqqf 90 (1636)
T KOG3616|consen 84 GVVQQQF 90 (1636)
T ss_pred Ccchhhc
Confidence 5433333
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.70 E-value=15 Score=46.29 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=43.3
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCce
Q 001386 935 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1008 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~ 1008 (1088)
+.+..+......+.....+.+-+|+.........+...+... +.++..++++..||.+.+||...|..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 344444444455554555556666655444333333222111 88999999999999999999999866
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=87.64 E-value=87 Score=39.32 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=17.0
Q ss_pred ccccEEEEEEecCCceEEEeccc
Q 001386 733 KANKISRLTYNNGGQAIFALASN 755 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~d 755 (1088)
+-..+.+++.+|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 45677899999999976654444
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=87.55 E-value=61 Score=37.46 Aligned_cols=192 Identities=12% Similarity=0.145 Sum_probs=90.2
Q ss_pred EEEEE---eCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCc--
Q 001386 457 SVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-- 531 (1088)
Q Consensus 457 ~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 531 (1088)
++++. .......+.| ..|.....+......... +...++|.+++... +.+..+|+. ++...........
T Consensus 117 ~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp EEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred EEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 45555 2344566666 555555444322111111 33356776666544 778888775 3333333333321
Q ss_pred -eEEEEEccCCCEEEEEee---------CCCCceeEEEEeCCCCceeEEEecccc------------------------c
Q 001386 532 -CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL------------------------Q 577 (1088)
Q Consensus 532 -v~~~~~s~~g~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------------~ 577 (1088)
=..+..-|+|++|+.+.. ...-+..|..+| .+|+.+..+..... .
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D 269 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD 269 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence 234667799999988772 111233466777 77777766432110 0
Q ss_pred cccEEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeEEEeCCCCCCCC-ceEEEec------------------CCCEE
Q 001386 578 HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTLL 637 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~l 637 (1088)
--.++++.+.+....|+..+. -..|...|..+++....+..+.....- ....+.| -|++-
T Consensus 270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~ 349 (477)
T PF05935_consen 270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHT 349 (477)
T ss_dssp S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EE
T ss_pred ccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccc
Confidence 124788999995555555555 448888998899988888665332211 1111111 24555
Q ss_pred EEEeCCC---cEEEEeCCCCC
Q 001386 638 AVIANEN---RIKILETPESN 655 (1088)
Q Consensus 638 ~~~~~dg---~i~iwd~~~~~ 655 (1088)
+.-..+| .|.++|-...+
T Consensus 350 ~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 350 AHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp EEE-TTS---SEEEEE--TTG
T ss_pred eEEcCCCCeEEEEEEECCCCC
Confidence 6666667 78888876554
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=41 Score=39.74 Aligned_cols=189 Identities=10% Similarity=0.005 Sum_probs=100.6
Q ss_pred CeeEEEEecCCCEEEEEe-CC-cEEEEEcCCcee----EEEecCCCCCeEEEEEcCCCCcEEEEEeC--CC--eEEEEEc
Q 001386 800 AVPCFALSKNDAYLFSAS-GG-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 869 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-dg-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg--~i~lwd~ 869 (1088)
.+.++++|+++..+|... ++ .+.+..+..+.. ..... .....+.-.|.+ ++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence 677899999999888776 33 466655533332 11111 123456667777 44 3333322 22 2555543
Q ss_pred CCceee--eeeccccC-CeeEEEECCCCCEEEEEeC---CCcEEEEEcCCCcee---eeeeeecCCCCccCCCCeEEEEE
Q 001386 870 RSSEVI--SKLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDGWGIQ---TCRSLQTPDGVMTLAPSETHIQF 940 (1088)
Q Consensus 870 ~~~~~~--~~l~~h~~-~V~~l~~s~dg~~las~s~---Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~f 940 (1088)
+|+.. .. ....+ .|..+..|+||..+|.... .+.|.|=-+...... .........+ ...+.+++|
T Consensus 441 -~G~~~~V~~-~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~----l~~v~~~~W 514 (599)
T PRK13613 441 -DGEPVEVRT-PELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE----LEDVTDMSW 514 (599)
T ss_pred -CCcEEEeec-cccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC----CCccceeEE
Confidence 44432 11 12333 7999999999988776543 355666555432211 1111111111 124889999
Q ss_pred cCCCCEEEEE--eCCeEEEE--EcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEeCCCcE
Q 001386 941 HKDQTRFLLV--HETHLAIY--EAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 998 (1088)
Q Consensus 941 s~dg~~l~~~--~d~~i~vw--d~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s~dg~v 998 (1088)
..++.+++.+ .++...+| ++..... .....+.-..+..++-..+.. .|+.+..++.|
T Consensus 515 ~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~-~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 515 AGDSQLVVLGREEGGVQQARYVQVDGSTP-PASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred cCCCEEEEEeccCCCCcceEEEecCCcCc-ccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 9999988864 23233444 4442222 111122345567777776666 44443555554
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.09 Score=56.54 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=95.8
Q ss_pred EEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-
Q 001386 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS- 817 (1088)
Q Consensus 739 ~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 817 (1088)
...+-+.+..++.++.+..+..||-.. ...... ........+++..+|..+++..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-------------------q~~le~-----n~tg~aldm~wDkegdvlavlAe 94 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-------------------QVILEL-----NPTGKALDMAWDKEGDVLAVLAE 94 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-------------------ceeccc-----CCchhHhhhhhccccchhhhhhh
Confidence 445667777788888887777776221 111111 1234455677878887776664
Q ss_pred -CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCE
Q 001386 818 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 896 (1088)
Q Consensus 818 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 896 (1088)
.+.+.+||+++......-.+....-.-+.|++ +...++.|...|.+.|++-.+.+.+.....|..+++++++.+.+ +
T Consensus 95 k~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~ 172 (615)
T KOG2247|consen 95 KTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-Y 172 (615)
T ss_pred cCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-e
Confidence 68899999986432221111111112278999 88999999999999999998877766666699999999999886 4
Q ss_pred EEEEeCCCcEEE
Q 001386 897 LVSSGGDAQIFV 908 (1088)
Q Consensus 897 las~s~Dg~i~i 908 (1088)
.+.++.|.++.+
T Consensus 173 vil~dcd~~L~v 184 (615)
T KOG2247|consen 173 VILCDCDNTLSV 184 (615)
T ss_pred eeecCcHHHHHH
Confidence 555666655443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=56 Score=36.49 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=19.2
Q ss_pred EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
+.+||..+.+....-..... .....+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788777654322211111 11223344456677777653
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.82 E-value=4.2 Score=41.05 Aligned_cols=73 Identities=10% Similarity=-0.037 Sum_probs=55.3
Q ss_pred EEEcCCCCEEEE-EeCCeEEEEEcCcceeeeee------ec-------CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 938 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 938 ~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
+.+..++.+|++ +.+|.+++||+.+++++... .. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 345567777776 89999999999999876543 22 3467889999999998887665 688999998
Q ss_pred CCCceEEE
Q 001386 1004 SNLEVQCR 1011 (1088)
Q Consensus 1004 ~~~~~~~~ 1011 (1088)
+-+..+.-
T Consensus 95 ~L~~W~~v 102 (219)
T PF07569_consen 95 DLGCWIRV 102 (219)
T ss_pred ccceeEEe
Confidence 87766543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.20 E-value=42 Score=39.33 Aligned_cols=199 Identities=12% Similarity=0.103 Sum_probs=99.5
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe----ccCCccEEEE
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF----EGHGAPVYSL 491 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~----~~~~~~v~~~ 491 (1088)
.-..|+|+++.+. .+... +-.|. .+-.+.|+.+.. |+....||++.++++-. +.+... ......|..+
T Consensus 62 a~~~I~If~~sG~-lL~~~--~w~~~-~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 62 ARPYIRIFNISGQ-LLGRI--LWKHG-ELIGMGWSDDEE---LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVEC 133 (829)
T ss_pred cceeEEEEecccc-chHHH--HhcCC-CeeeecccCCce---EEEEeccceEEEeecch-hhhcccccccccccCceeEE
Confidence 3345899998753 33321 22343 788999998876 77788999999999643 322221 1122334444
Q ss_pred eeeeeCCceEEEEEecCCeEEEE-ECCCCCceEEecC-CCC--ceEEEEEccCCCE---EEEEeeCCCCceeEEEEeCCC
Q 001386 492 CPHAKENIHFIFSISVDGKIKAW-LYDSLGARVDYDA-PGL--GCTRMAYSANGRR---LFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~-~~~--~v~~~~~s~~g~~---l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.+.. +| ++.-..+|.+.+- +...... ..... +.. +..|-+..+++.. ++-... .--..+..-+..+
T Consensus 134 ~~f~--~G--Vavlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~ 206 (829)
T KOG2280|consen 134 RFFH--NG--VAVLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESR 206 (829)
T ss_pred EEec--Cc--eEEEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceeccc
Confidence 3322 33 3334444554433 2222111 11111 111 1122222222211 111100 0000011111111
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
.+.. .+... ...+..+..+|+.++++--...|.|.+-+.+..+.+..+....+.. -..++|.-+.
T Consensus 207 ~q~~-~~~~~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgnd 271 (829)
T KOG2280|consen 207 VQLH-ALSWP---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGND 271 (829)
T ss_pred cccc-ccCCC---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecCC
Confidence 1111 11111 1467888999999999999999999999988888777776443322 2356666544
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.2e+02 Score=39.44 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=88.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.|-..++.|.-+|+|.+ +=. .|+.++.||..++. |... -..-..+++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCe-EEe--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence 45567788888888885 332 56888888877653 2110 01133456666666677776
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC------ce--eEEecc
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG 483 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~------~~--~~~~~~ 483 (1088)
| .++. .|-|+..+..-. ..-..+.+...+++|+- .+.++.....+.+|++... ++ ...+.+
T Consensus 418 A---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2221 234555543211 12235777888899983 3566665667799987753 11 123333
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1088)
......++.+ +++ .|+.+..+|.++.=++..
T Consensus 487 G~a~A~~VgL--s~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGL--SND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheee--cCC--eEEEEeCCCCEEeccccc
Confidence 3335555665 333 688888899888776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=85.92 E-value=60 Score=35.75 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=43.8
Q ss_pred CCCEEEEEe--CCcEEEEEcCC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC-----------CeEEEEEcCC
Q 001386 809 NDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-----------STILIYNARS 871 (1088)
Q Consensus 809 dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----------g~i~lwd~~~ 871 (1088)
++++.+.+. ...+..+|+.. +..+..+......-.+++. - ++++.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~-~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-I-DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE-E-CCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 555555554 34577777632 2222222211111112222 2 67788888753 2577888876
Q ss_pred ceeeeeeccccCCeeE-EEE-CCCCCEEEEEeCC
Q 001386 872 SEVISKLEGHSKRVTG-LVF-SDALNILVSSGGD 903 (1088)
Q Consensus 872 ~~~~~~l~~h~~~V~~-l~~-s~dg~~las~s~D 903 (1088)
.+-...-......... .+. .-++++.+.|+.+
T Consensus 95 ~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 95 NSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 5422111011111111 112 3477888888764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.59 E-value=3.1 Score=44.65 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=95.4
Q ss_pred ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee-eee-ccccC----Cee-EEEECCCCCEEEEEe
Q 001386 829 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKL-EGHSK----RVT-GLVFSDALNILVSSG 901 (1088)
Q Consensus 829 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~dg~~las~s 901 (1088)
++.+..+......+..+-..| |++.+..-+. .++.|+++.+...- .++ ....+ .|+ .+..-..|.-|..++
T Consensus 210 ~e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 344445666667888899999 8988887665 68889988764321 111 11111 122 222233566678888
Q ss_pred CCCcEEEE-EcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEE
Q 001386 902 GDAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQ 979 (1088)
Q Consensus 902 ~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 979 (1088)
.||.|.-| |+..+.......++...-. ..++..+.=-...+-++. ...|++.++.....+.+-.-. --..+.-
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~ 362 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQL 362 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcce
Confidence 99988877 4433221111111111100 011222211112222333 455666666544443332111 1235677
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 980 ATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 980 l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
+++||++.+|++- +.|.++++.+++....-++
T Consensus 363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 363 VAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred eeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence 8999999999864 5678999999887654333
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=85.37 E-value=60 Score=35.29 Aligned_cols=70 Identities=9% Similarity=-0.068 Sum_probs=35.6
Q ss_pred CceEEEEEecC-----CeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
++.+.+.|+.. ..+..||+.+.+=...-..+. ......+...+++..+.++.++.....+..||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 44566666642 357777776544222111111 12222333456667777665432223467889887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.08 E-value=64 Score=35.36 Aligned_cols=199 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred ecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCc--
Q 001386 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV-- 820 (1088)
Q Consensus 743 s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~-- 820 (1088)
.|...+++.....+-+.+|+++ |+.+.....-..+.-.-...+.+.-...-|+++++..
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~-------------------Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g 125 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLD-------------------GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDG 125 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETT-------------------S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCC
T ss_pred CcccceEEEEeCCCCEEEEcCC-------------------CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCC
Q ss_pred ---EEEEEcC-CceeEEEecCCCCCe---------EEEEEcCCCCc-EEEEEeCCCeEEEEEcCC-------ceeeeeec
Q 001386 821 ---ISLYIVM-TFKTILTIMPPSPTA---------TSLAFNPHDNN-VIAIGMDDSTILIYNARS-------SEVISKLE 879 (1088)
Q Consensus 821 ---i~iwd~~-~~~~~~~~~~~~~~i---------~~l~~sp~d~~-~lasg~~dg~i~lwd~~~-------~~~~~~l~ 879 (1088)
|++|.+. ....+..+.....++ .|+.-+|.++. ++++...+|.+..|.+.. ++++++|.
T Consensus 126 ~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp T-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC--CccCCCCeEEEEEcCCCCEEEEE--eCCeE
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG--VMTLAPSETHIQFHKDQTRFLLV--HETHL 955 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~fs~dg~~l~~~--~d~~i 955 (1088)
.-+ .+..++......+|..+-+|.-|.-|+.+.........+....+ ....-+.+.-..-.....||+++ .+++.
T Consensus 206 ~~s-Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 206 VGS-QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -SS--EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred CCC-cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Q ss_pred EEEEcC
Q 001386 956 AIYEAE 961 (1088)
Q Consensus 956 ~vwd~~ 961 (1088)
.||+..
T Consensus 285 ~Vy~r~ 290 (381)
T PF02333_consen 285 AVYDRE 290 (381)
T ss_dssp EEEESS
T ss_pred EEEecC
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.97 E-value=24 Score=39.84 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=60.7
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC------CEEEEE--e--
Q 001386 882 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-- 951 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg------~~l~~~--~-- 951 (1088)
-...+.|+|.|||++|++--..|.|++++-.++.......+..... .........++|+|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 3456889999999888876556999998866543211111110000 0012468899999884 234332 1
Q ss_pred -------CCeEEEEEcCcc--ee--eeeeecC----CCcCEEEEEEeeCCCEEEEEeCC
Q 001386 952 -------ETHLAIYEAEEL--TC--LKQWFPI----SSVPISQATFSCDCRMVFTSFVD 995 (1088)
Q Consensus 952 -------d~~i~vwd~~~~--~~--~~~~~~~----h~~~v~~l~fs~dg~~l~s~s~d 995 (1088)
...|.-|.+... .. ...++.+ ....-..++|.|||.+.++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444554321 11 1111211 12334567899999876655543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.86 E-value=16 Score=40.22 Aligned_cols=151 Identities=9% Similarity=0.087 Sum_probs=88.5
Q ss_pred EEEEcCCCCcEEE-EEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCC--------CEEEEEeCCCcEEEEEcCC-
Q 001386 844 SLAFNPHDNNVIA-IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL--------NILVSSGGDAQIFVWDVDG- 913 (1088)
Q Consensus 844 ~l~~sp~d~~~la-sg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg--------~~las~s~Dg~i~iwd~~~- 913 (1088)
.+..+.++..+|. .|.....++--|+.-|+.+..+.-|... -+.|.|+. +.|+-.|..+ |.--|-.-
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~ 547 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRAR 547 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEeccccc
Confidence 3334433555544 4555668888899999999999988774 57787743 4455444444 32223221
Q ss_pred CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEE
Q 001386 914 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 992 (1088)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~ 992 (1088)
|........+...+... ..+..- ....++|+ +..|-|++||-- |....+.+++-+..|..+..+.+|+++++.
T Consensus 548 gNKi~v~esKdY~tKn~----Fss~~t-TesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 548 GNKIKVVESKDYKTKNK----FSSGMT-TESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred CCceeeeeehhcccccc----cccccc-ccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEe
Confidence 11111111111111111 222222 33456666 667889999954 444455566778899999999999998766
Q ss_pred eCCCcEEEEEcC
Q 001386 993 FVDGTLSIHEAS 1004 (1088)
Q Consensus 993 s~dg~v~vwd~~ 1004 (1088)
+. .++.+-|+.
T Consensus 622 Ck-~yllL~d~~ 632 (776)
T COG5167 622 CK-NYLLLTDVP 632 (776)
T ss_pred ec-ceEEEEecc
Confidence 54 466666654
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.23 E-value=6.4 Score=38.10 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCeeEEEECCCC------CEEEEEeCCCcEEEEEcCC
Q 001386 883 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 883 ~~V~~l~~s~dg------~~las~s~Dg~i~iwd~~~ 913 (1088)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 5688999999999998775
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.65 E-value=94 Score=35.39 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
...+|.++.+...|.+ -+|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 3478889999988854 5567888 888898888755421 122335677777777776 66677555 67776554
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=82.25 E-value=29 Score=36.48 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=64.0
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe------cCCeEEEEECCCCCceEEec----CCCCceEEE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYD----APGLGCTRM 535 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~ 535 (1088)
.|++||..+.+-..--.+-.+.|.++.|. .+.++++.|. ....+..||+.+..-...-. .-.+++..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 58999988776655555567889999985 3446666664 35568889887664322222 123567777
Q ss_pred EEc-cCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 536 AYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 536 ~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
.+. .|+..+..++....+...|..||-.....+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 664 355555544444566778888886554443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=81.95 E-value=78 Score=33.96 Aligned_cols=239 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred EecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCc-
Q 001386 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV- 820 (1088)
Q Consensus 742 ~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~- 820 (1088)
+..++++++.|+.+|...+ +..........-+ +...|+++.+.+.-+.|++-+++.
T Consensus 9 ~~~~~~~lL~GTe~Gly~~-------------------~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Lsgk~~ 65 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVL-------------------NISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMISGKKP 65 (302)
T ss_pred cccCCcEEEEEeCCceEEE-------------------EcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEeCCcc
Q ss_pred -EEEEEcCCcee----------------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc--
Q 001386 821 -ISLYIVMTFKT----------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-- 881 (1088)
Q Consensus 821 -i~iwd~~~~~~----------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h-- 881 (1088)
++.+++..... .. .-++......++........++++....+|.++.......-.....+
T Consensus 66 ~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~ 144 (302)
T smart00036 66 QLYSHPLSALVEKKEALGSARLVIRKNVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKF 144 (302)
T ss_pred eEEEEEHHHhhhhhhccCCccccccccceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccc
Q ss_pred ------cCCeeEEEECCC--CCEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCc-cCCCCeEEEEEcCCCCEEEEE
Q 001386 882 ------SKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVM-TLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 882 ------~~~V~~l~~s~d--g~~las~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~-~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
..++..+..+++ ...+..|+..+...+.++.. ................ . ++....+..+ .++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~---p~~i~~l~~~--e~Llc 219 (302)
T smart00036 145 LFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLK---PISVVQVPRD--EFLLC 219 (302)
T ss_pred cccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccC---ceEEEEECCC--eEEEE
Q ss_pred eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 951 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 951 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
.|....+-|....+..+.....=.....++++... +|+.-..++ |.|+++.+++++..+
T Consensus 220 ~~~~~v~Vn~~G~~~~r~~~l~w~~~p~~~~~~~p--yll~~~~~~-ievr~l~~~~l~q~i 278 (302)
T smart00036 220 YDEFGVFVNLYGKRRSRNPILHWEFMPESFAYHSP--YLLAFHDNG-IEIRSIKTGELLQEL 278 (302)
T ss_pred ECcEEEEEeCCCCccccceEEEcCCcccEEEEECC--EEEEEcCCc-EEEEECCCCceEEEE
|
Unpublished observations. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1088 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-09 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 9e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-09 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-09 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-08 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 7e-08 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-08 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-08 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 8e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-08 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-08 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 9e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-07 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-07 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-05 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 7e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 8e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-05 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 7e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.8 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.72 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.72 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.72 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.7 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.7 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.65 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.6 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.6 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.57 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.54 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.53 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.52 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.5 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.5 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.38 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.36 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.34 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.32 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.32 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.31 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.31 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.3 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.29 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.28 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.27 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.26 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.25 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.23 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.21 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.2 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.19 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.19 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.18 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.16 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.16 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.16 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.14 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.14 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.13 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.11 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.05 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.04 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.99 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.98 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.98 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.94 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.85 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.85 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.78 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.78 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.77 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.76 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.71 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.69 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.68 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.67 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.66 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.65 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.63 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.63 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.58 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.58 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.58 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.54 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.51 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.51 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.51 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.49 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.48 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.42 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.41 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.41 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.41 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.38 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.38 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.35 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.33 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.31 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.31 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.3 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.3 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.25 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.25 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.24 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.23 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.21 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.19 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.04 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.98 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.98 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.95 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.92 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.87 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.84 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.82 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.82 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.81 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.75 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.69 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.65 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.64 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.64 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.6 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.57 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.53 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.52 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.47 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.35 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.35 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.26 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.18 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.16 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.01 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.98 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.93 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.92 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.88 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.87 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.86 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.82 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.82 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.79 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.75 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.71 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.65 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.64 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.61 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.5 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.47 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.36 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.34 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.16 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.07 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.98 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.98 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.74 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.58 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.49 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.47 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.44 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.14 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.71 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.35 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.97 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.81 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.44 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 92.65 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.57 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 92.0 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 91.5 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.61 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 90.58 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 90.51 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.89 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 89.81 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 89.71 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.17 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 88.91 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 85.44 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.39 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-69 Score=646.86 Aligned_cols=567 Identities=22% Similarity=0.341 Sum_probs=484.6
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
.+.|+||++.|++++|||||+ +||+|+.|++|+|||. +++++.+ +.+|.+.|.+++|+|
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 366999999999999999999 6899999999999995 6766654 788999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
||++||+++.|++|+|||+. ++.+ ..+.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence 99999999999999999975 4433 37889999999999999999 89999999999999954 455667788999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.+..+.+. +++..+++++.++.+++|+.. .........+...+.+++++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFS--PDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEEC--TTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeee--cCCccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 99999884 466789999999999999854 3445566678889999999999999999975 556999995 677
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcE
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1088)
.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.|
T Consensus 213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEE
Confidence 888888887 89999999999999999999999999996 567777777654 468999999999999999999999
Q ss_pred EEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceee
Q 001386 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1088)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 726 (1088)
++|+... +....+
T Consensus 287 ~~w~~~~-~~~~~~------------------------------------------------------------------ 299 (577)
T 2ymu_A 287 KLWNRNG-QLLQTL------------------------------------------------------------------ 299 (577)
T ss_dssp EEEETTS-CEEEEE------------------------------------------------------------------
T ss_pred EEEeCCC-cEEEEE------------------------------------------------------------------
Confidence 9999642 221111
Q ss_pred ecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE
Q 001386 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806 (1088)
Q Consensus 727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1088)
.+|...|.+++|+|+++.+++++.|+.+++|+..... +.. +. +|...+.+++|
T Consensus 300 ----~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-------------------~~~--~~--~~~~~v~~~~~ 352 (577)
T 2ymu_A 300 ----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-------------------LQT--LT--GHSSSVWGVAF 352 (577)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-------------------EEE--EC--CCSSCEEEEEE
T ss_pred ----ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-------------------eEE--Ee--CCCCCEEEEEE
Confidence 1266778899999999999999999999999864321 111 11 47889999999
Q ss_pred ecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCe
Q 001386 807 SKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 885 (1088)
Q Consensus 807 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V 885 (1088)
+|+++++++++ ++.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v 429 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 429 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCE
T ss_pred CCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCe
Confidence 99999999998 899999995 5788889999999999999999 8999999999999999995 578889999999999
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcce
Q 001386 886 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 964 (1088)
Q Consensus 886 ~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~ 964 (1088)
++++|+||+++|++++.|++|++||.... .+....+|.. .|.+++|+||+++|++ +.|+.|++||. +++
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~~-~~~ 499 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 499 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEET-TSC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCC
Confidence 99999999999999999999999997652 2333344443 7999999999999999 57899999995 577
Q ss_pred eeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001386 965 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1044 (1088)
Q Consensus 965 ~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~ 1044 (1088)
++.. +.+|...|++++|||||++|++++.||.|++||. +++.+..+..+ .-...+++|+| |+++|++
T Consensus 500 ~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h----------~~~v~~~~fs~-dg~~l~s 566 (577)
T 2ymu_A 500 LLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH----------SSSVWGVAFSP-DGQTIAS 566 (577)
T ss_dssp EEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC----------SSCEEEEEECT-TSSCEEE
T ss_pred EEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC----------CCCEEEEEEcC-CCCEEEE
Confidence 7776 5589999999999999999999999999999996 57777666511 12346799999 8999999
Q ss_pred EeCCCcEEEEe
Q 001386 1045 GLTNGEVYVIE 1055 (1088)
Q Consensus 1045 ~~~dg~v~~w~ 1055 (1088)
++.||+|++||
T Consensus 567 ~~~D~~i~~Wd 577 (577)
T 2ymu_A 567 ASSDKTVKLWN 577 (577)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCEEEEeC
Confidence 99999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-66 Score=624.72 Aligned_cols=576 Identities=15% Similarity=0.180 Sum_probs=476.6
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+++.+.+++|||||+ +||+++ +++|+|||+.+++.... +.+|...|++++|||||++|
T Consensus 16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence 4567889999999999 577876 57999999998876654 78899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEeccCCcc
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
|+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .+++++.+ +.|++|| +++.+..+.+|...
T Consensus 75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 999999999999998665432 236789999999999999999 67777754 3566776 67788889999999
Q ss_pred EEEEeeeeeCCce-EEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 488 v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
|.+++|+| ++. .|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. ++.|++||..+++
T Consensus 150 v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 150 MNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGT 223 (611)
T ss_dssp EEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred ceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCc
Confidence 99999965 444 6999999999999999888888889999999999999999999999986 5569999999999
Q ss_pred eeEEEe-------ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCC-CCCceEEEecCCCEEE
Q 001386 567 IKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLA 638 (1088)
Q Consensus 567 ~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~ 638 (1088)
.+..+. +|. +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... .....+.| ++..++
T Consensus 224 ~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 298 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV 298 (611)
T ss_dssp EEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred EeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence 888874 455 89999999999999999999999999999999999888754221 12234444 788999
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccccc
Q 001386 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 718 (1088)
+++.|+.+++|+...+.....+.+|...|.+++++ |+++++++++.|++|++|++...
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTC
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999888878888999999999997 67889999999999999998643
Q ss_pred CCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
.. ......+|...|.+++|++++ .+++++.|+.+++|+......... . ..... ..
T Consensus 357 ~~-----~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-------------~-~~~~~-----~~ 411 (611)
T 1nr0_A 357 IS-----NRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-------------K-AVANK-----LS 411 (611)
T ss_dssp CE-----EECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-------------S-CCEEE-----CS
T ss_pred ce-----eeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-------------c-eeeee-----cC
Confidence 21 112224588899999999776 588999999999998765432100 0 00001 23
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee--ee
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--IS 876 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~--~~ 876 (1088)
..+.+++++|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.++.. +.
T Consensus 412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 412 SQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp SCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeee
Confidence 456789999999988888899999999 344 55554 778899999999 899999999999999999987654 33
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCe
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 954 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~ 954 (1088)
. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|.. .|.+++|+|||++||+ +.|++
T Consensus 487 ~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~D~~ 559 (611)
T 1nr0_A 487 T-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSLDNS 559 (611)
T ss_dssp E-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEETTSC
T ss_pred c-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEECCCc
Confidence 4 67999999999999999999999999999999987 33211 001223443 7999999999999999 57899
Q ss_pred EEEEEcCcceeee-eeecCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 955 LAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 955 i~vwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 560 v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 560 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999876333 456789 89999999999998 9999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-63 Score=599.19 Aligned_cols=556 Identities=22% Similarity=0.346 Sum_probs=472.3
Q ss_pred CcCCCCCCCchhhhcccccCCcccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeece
Q 001386 296 NIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1088)
Q Consensus 296 ~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~ 375 (1088)
.++.|+|++.++.--- ......+++....++++|.+|++.|++++|||||+ +||+++.|++|+|||+ +++.+..
T Consensus 20 ~~~a~spdg~~las~~-~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~--- 93 (577)
T 2ymu_A 20 RGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT--- 93 (577)
T ss_dssp EEEEECTTSSCEEEEE-TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE---
T ss_pred EEEEECCCCCEEEEEe-CCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE---
Confidence 3567889888765432 12233455667788999999999999999999999 6899999999999996 5665544
Q ss_pred eeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc
Q 001386 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 376 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 455 (1088)
+.+|...|.+++|+||+++|++++.|+.+++|+..... .....+|...|..+.|+|++.
T Consensus 94 ----------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~- 152 (577)
T 2ymu_A 94 ----------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ- 152 (577)
T ss_dssp ----------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS-
T ss_pred ----------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc-
Confidence 77899999999999999999999999999999987643 235778999999999999999
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEE
Q 001386 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
.+++++.++.+++|+ ..+........|...|.++.+ .+++.++++++.||.|++||. +.+....+..+...|.++
T Consensus 153 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~ 227 (577)
T 2ymu_A 153 -TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF--SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 227 (577)
T ss_dssp -CEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEE--CTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred -cceecccccceeccc-cceeeeeeccCCCcceeeeee--cCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEE
Confidence 788999999999998 455666777889999999988 457789999999999999995 456667788899999999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
+|+|++++|++++. ++.|++||. +++.+..+.+|. ..|.+++|+|+++.+++++.|+.|++|+. +++.+..
T Consensus 228 ~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~ 298 (577)
T 2ymu_A 228 AFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQT 298 (577)
T ss_dssp EECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE
T ss_pred EECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEE
Confidence 99999999999876 456999995 567788888887 89999999999999999999999999996 4677777
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 695 (1088)
+..|. ..|.+++|+|+++++++++.|+.|++|+..... +..+
T Consensus 299 ~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~----------------------------------- 340 (577)
T 2ymu_A 299 LTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL----------------------------------- 340 (577)
T ss_dssp ECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE-----------------------------------
T ss_pred EecCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE-----------------------------------
Confidence 77654 468999999999999999999999999976321 1111
Q ss_pred CCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCC
Q 001386 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVP 775 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 775 (1088)
.+|...+.+++|+|+|+.+++++.+|.+++|+...
T Consensus 341 -----------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---------- 375 (577)
T 2ymu_A 341 -----------------------------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------- 375 (577)
T ss_dssp -----------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------
T ss_pred -----------------------------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------
Confidence 12566788999999999999999999999998432
Q ss_pred CcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcE
Q 001386 776 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 854 (1088)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 854 (1088)
..+.. +. +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++
T Consensus 376 ---------~~~~~--~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~ 440 (577)
T 2ymu_A 376 ---------QLLQT--LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQT 440 (577)
T ss_dssp ---------CEEEE--EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSE
T ss_pred ---------CEEEE--ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCE
Confidence 11222 11 3888999999999999999998 899999995 5788889999999999999999 8999
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCC
Q 001386 855 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
|++++.|+.|++||. +++.+..+.+|...|.+++|+||+++|++++.|++|++||... + +++.+.+|.. .
T Consensus 441 l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~ 510 (577)
T 2ymu_A 441 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---S 510 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---C
T ss_pred EEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---C
Confidence 999999999999996 5778889999999999999999999999999999999999754 2 3444455554 7
Q ss_pred eEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 935 ETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
|.+++|+|||++||+ +.|+.|++||. +++++.. +.+|.+.|++++|+|||++|++++.|++|++||
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999 57899999996 5777776 558999999999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-65 Score=668.27 Aligned_cols=620 Identities=14% Similarity=0.178 Sum_probs=513.4
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
....++.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 665 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAF 665 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred cceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEE
Confidence 34456789999999999999999 689999999999999999987765 7789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|||++||+++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.+++++..+.+|
T Consensus 666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h 742 (1249)
T 3sfz_A 666 SSDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742 (1249)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC
T ss_pred ecCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC
Confidence 9999999999999999999999997655 6789999999999999765558999999999999999999999999999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-------------CCceEEEEEccCCCEEEEEeeCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
...|.+++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++
T Consensus 743 ~~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--- 817 (1249)
T 3sfz_A 743 TNSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--- 817 (1249)
T ss_dssp SSCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE---
T ss_pred CCCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc---
Confidence 99999999955 6779999999999999999887765544321 23678899999999999987
Q ss_pred CCceeEEEEeCCCCceeEEEe-ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
++.+.+||..++.....+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..|.. .|.+++|
T Consensus 818 --~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~ 890 (1249)
T 3sfz_A 818 --KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMF 890 (1249)
T ss_dssp --TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEE
T ss_pred --CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEE
Confidence 3459999999998888776 455 8999999999999999999999999999999999999886644 6999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
+|+++++++++.||.|++|++.+......... .......+. +++..++.....+.+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVFQ----------------------ENETMVLAVDNIRGL 946 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEEE----------------------TTEEEEEEEESSSSE
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEEc----------------------CCCcEEEEecCCcce
Confidence 99999999999999999999764322211110 001111111 223333344444445
Q ss_pred eeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceee
Q 001386 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVN 790 (1088)
Q Consensus 711 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1088)
.++..... ... ......+.+++++|+++++++++.+|.+++|++..+.. ...
T Consensus 947 ~~~~~~~~---~~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~------------------~~~- 998 (1249)
T 3sfz_A 947 QLIAGKTG---QID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV------------------FSS- 998 (1249)
T ss_dssp EEEEESSC---CEE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC------------------EEE-
T ss_pred EEEecCcc---eEE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce------------------eee-
Confidence 55543211 111 11346799999999999999999999999998764432 221
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 001386 791 DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 869 (1088)
Q Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~ 869 (1088)
+ .+|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++||+
T Consensus 999 -~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 999 -G--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp -C--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEET
T ss_pred -c--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEEC
Confidence 1 14889999999999999999997 8999999999988764 557899999999999 55 5778999999999999
Q ss_pred CCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 870 ~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.+++.+..+.+|.+.|.+++|+||+++|++++.||+|++||+.+++ .+....+|.. .|.+++|+|||++|++
T Consensus 1073 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~lat 1144 (1249)
T 3sfz_A 1073 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGILLAT 1144 (1249)
T ss_dssp TTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSEEEE
T ss_pred CCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999999999999854 4445556554 7999999999999999
Q ss_pred -EeCCeEEEEEcCcceeeeee--------ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC
Q 001386 950 -VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1020 (1088)
Q Consensus 950 -~~d~~i~vwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1020 (1088)
+.|+.|++||+.+++.+..+ ..+|.+.|++++|||||++|++++ |.|++||+.+++.+..+..+.
T Consensus 1145 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~---- 1218 (1249)
T 3sfz_A 1145 GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG---- 1218 (1249)
T ss_dssp EETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS----
T ss_pred EeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC----
Confidence 57899999999999987764 256899999999999999999885 899999999998876554221
Q ss_pred CCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1021 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
-...+++|+| |+..|++++.||.|++|++.+
T Consensus 1219 ------~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1219 ------TNLKKIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp ------CCCCCCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred ------CcccEEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 1234588999 889999999999999999853
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-63 Score=597.77 Aligned_cols=574 Identities=11% Similarity=0.104 Sum_probs=457.0
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
..+.+.+.+++|+|||++||+++ ++.|++||+.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 88 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence 34678889999999999999997 5699999998876554 6889999999999999999 8999999999999999
Q ss_pred CCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCceEEecCCCCceEEEEEccCCC-EEE
Q 001386 473 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF 545 (1088)
Q Consensus 473 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~ 545 (1088)
.+++ ....+.+|.+.|.+++|+ +++++|++++.+ +.|++|| .+.....+..|...|.+++|+|++. .|+
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs--~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWD--SESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEEC--TTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred CCCcceeeEeecccCCceEEEEEC--CCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 7654 456788999999999995 577889988865 4677776 4556667788999999999999997 588
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-----C
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G 620 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~ 620 (1088)
+++. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+... .
T Consensus 165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence 8875 5569999999999999999888 89999999999999999999999999999999988887421 2
Q ss_pred CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccC---cceeeeecCCCcceeccccCCceeecCCCCCC
Q 001386 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1088)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 697 (1088)
+...|.+++|+|++++|++++.|++|++||+.+++....+..+.. ....+. .+
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 293 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT 293 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence 345799999999999999999999999999998876655543211 111111 24
Q ss_pred CCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCc
Q 001386 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPR 777 (1088)
Q Consensus 698 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 777 (1088)
+..+++++.|+.+++|+..... . .. ...+|...|.+++|+|+|++|++++.|+.|++|++..+..
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~---~-~~--~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~--------- 358 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGS---I-DQ--VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS--------- 358 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTE---E-EE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------
T ss_pred CCEEEEEeCCCcEEEEeCCCCC---c-ce--EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---------
Confidence 6789999999999999975332 1 11 1235889999999999999999999999999999764422
Q ss_pred ccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEE---ecCCCCCeEEEEEcCCCCcE
Q 001386 778 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNV 854 (1088)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~ 854 (1088)
... + ...|...|.++++++++.++..+.|+.+++|+..++..... .........+++|+| ++++
T Consensus 359 ---------~~~--~-~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 425 (611)
T 1nr0_A 359 ---------NRV--F-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDI 425 (611)
T ss_dssp ---------EEC--S-SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSC
T ss_pred ---------eee--c-ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcE
Confidence 111 1 12488899999999888655555599999999876543210 011234567899999 7877
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCC
Q 001386 855 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .+|.. .
T Consensus 426 ~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~~---~ 493 (611)
T 1nr0_A 426 AVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHPA---E 493 (611)
T ss_dssp EEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECSS---C
T ss_pred EEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCCC---c
Confidence 7776 567899998 344 55555 88899999999999999999999999999998754221 122 23433 7
Q ss_pred eEEEEEcCCCCEEEE-EeCCeEEEEEcCc-ceeeee-eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEE-
Q 001386 935 ETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC- 1010 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~-~~d~~i~vwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~- 1010 (1088)
|.+++|+|||++|++ +.|++|++||+.+ +++... ...+|...|.+++|||||++|++|+.|++|++|++.++....
T Consensus 494 v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~ 573 (611)
T 1nr0_A 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccc
Confidence 999999999999999 5789999999998 666554 344599999999999999999999999999999999876322
Q ss_pred EeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1011 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
... ..+. .-...+++|+| |+. |++|+.||+|++|+++
T Consensus 574 ~~~----~~h~----~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 574 IIK----GAHA----MSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EET----TSST----TSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred hhh----ccCc----ccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 111 0110 12356799999 677 9999999999999983
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=578.95 Aligned_cols=559 Identities=11% Similarity=0.158 Sum_probs=484.6
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC----cceeeeceeeeeeccccccceeeeecCCCCC-eEEEEEC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 405 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~l~~s 405 (1088)
..|.+.|.+++|||||+ +||+++ ++.|+|||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 36788999999999999 577776 789999999988 65544 7889999 9999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-----cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC----CcEEEEeCCC
Q 001386 406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 474 (1088)
Q Consensus 406 ~--dg~~las~~~dg~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d----~~i~vwd~~~ 474 (1088)
| |+++||+++.||.|++||+.+++ .......+..|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999997651 1123336778999999999999999 78888877 6788887 7
Q ss_pred CceeEEeccCCccEEEEeeeeeCCce-EEEEEecCCeEEEEECCCCCceEEecCCCC---ceEEEEEccC-CCEEEEEee
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 549 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-g~~l~~~~~ 549 (1088)
++.+..+.+|...|.+++|++ ++. .+++++.||.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 788899999999999999965 444 899999999999999999888888888888 9999999999 999999976
Q ss_pred CCCCceeEEEEeCCCCceeEEE-e---ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC--CC
Q 001386 550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 623 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 623 (1088)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 456999999999999888 5 666 899999999 999999999999999999999999998886521 12
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.+.++.|+ ++.++++++.||.|++||+.+++.+..+.+|...|.++++ |. +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence 45677775 8999999999999999999998888889999999998888 51 788
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~--------------- 405 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF--------------- 405 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC---------------
T ss_pred ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc---------------
Confidence 8999999999976 122 458899999999 6678899999999999998654321
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CC
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS 862 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg 862 (1088)
...+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++. ||
T Consensus 406 --------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~ 467 (615)
T 1pgu_A 406 --------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGN 467 (615)
T ss_dssp --------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTS
T ss_pred --------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCC
Confidence 126788999999999999889999999999999988887 88899999998 579999999 99
Q ss_pred eEEEEEcCCceee-eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CccCCCCeEEEEE
Q 001386 863 TILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQF 940 (1088)
Q Consensus 863 ~i~lwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~f 940 (1088)
.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.+++|
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~~~~~ 539 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KINAISW 539 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEEEEEE
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---ceeEEEE
Confidence 9999999998776 7788899999999999999999999999999999999865 3344444 443 7999999
Q ss_pred cC----------CCCEEEE-EeCCeEEEEEcCcc-eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 941 HK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 941 s~----------dg~~l~~-~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+| ++++|++ +.|+.|++||+.++ +++.. +.+|...|.+++|+||++ |++++.||+|++|++.++
T Consensus 540 sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 540 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp CCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred cCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 99 9999999 57899999999998 55555 678999999999999999 999999999999998753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-58 Score=572.21 Aligned_cols=631 Identities=11% Similarity=0.087 Sum_probs=466.5
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
...+|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+| |
T Consensus 12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g 69 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-G 69 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-T
T ss_pred cccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-C
Confidence 3458999999999999999 79999999999999988776543 223788999999999 8
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----------
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------- 478 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~---------- 478 (1088)
++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred CEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 899999999999999999987665 343 678999999999999 8999999999999999988764
Q ss_pred -EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC------------------CCceEEEEEcc
Q 001386 479 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA 539 (1088)
Q Consensus 479 -~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s~ 539 (1088)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred ccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 234679999999999763 34689999999999 9999998877766554 35799999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEE--Ee---ccc----------cccccEEEEEEeC----CC-CEEEEEeCC
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFDT----AK-DQILAAGDD 599 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~~----~~-~~l~~~s~d 599 (1088)
+|++|++++. ++.|++||+.+++.+.. +. .|. .+...|.+++|++ ++ ..+++|+.+
T Consensus 222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999986 45699999999987654 21 121 1235799999964 43 456667665
Q ss_pred -----CcEEEEEcC------------------CCeeeEEEeCCCCCCCCceEEEec----------CCCEEEEEeCCCcE
Q 001386 600 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI 646 (1088)
Q Consensus 600 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i 646 (1088)
+.+.+|++. +++....+... ....+..+.+.+ ++..+++++.||.|
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 378899852 22333444321 123466777755 34578899999999
Q ss_pred EEEeCCCCCccc-------ccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 647 KILETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 647 ~iwd~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
++|++.++.... .+..|...|+++++++. ..++|+.....
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~ 423 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSA 423 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEc---------------------------------CHHHHHHHHhc
Confidence 999997764322 23445566666666521 12334421110
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeecc---CCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDT---TDSN 796 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 796 (1088)
.... ..+..+|...+..++|+|+++.+++++.|++|++||+..+.... .+ .+...+ ...+
T Consensus 424 ~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~-----~~---------~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 424 AQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD-----NA---------SFEVNLSRTLNKA 486 (902)
T ss_dssp TBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT-----TB---------CEEEEHHHHTTCS
T ss_pred ccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC-----Cc---------eEEeechhhcCCC
Confidence 0000 11234567778889999999999999999999999987653210 00 011000 0124
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCc---------------------------------------------e
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF---------------------------------------------K 830 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~---------------------------------------------~ 830 (1088)
|...|.+++|+|||++||+|+ ||+|+|||+.++ +
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 888999999999999999998 899999999866 2
Q ss_pred eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-----eec-cccCCeeEEEEC-----CCC---CE
Q 001386 831 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---NI 896 (1088)
Q Consensus 831 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~dg---~~ 896 (1088)
++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++|+|| ||| ++
T Consensus 567 ~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred eeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 4677889999999999999 88 99999999999999999887653 343 899999999999 886 89
Q ss_pred EEEEeCCCcEEEEEc---CCCceeeeeeeecCCCCcc--CCCCeEEEE-Ec----------------------CCCCEEE
Q 001386 897 LVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KDQTRFL 948 (1088)
Q Consensus 897 las~s~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-fs----------------------~dg~~l~ 948 (1088)
|++++.|++|++||+ .+|+.. ..+.++.. ....|..++ |+ +++..|+
T Consensus 645 l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~ 719 (902)
T 2oaj_A 645 MVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI 719 (902)
T ss_dssp EEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE
T ss_pred EEEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEE
Confidence 999999999999999 555422 22222221 113566665 65 4555444
Q ss_pred EEeCCeEEEEEcCcceeeeeeecCCCcCEEEE---E------EeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccC
Q 001386 949 LVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR 1019 (1088)
Q Consensus 949 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 1019 (1088)
+ .+..|+||++.++++..... .|...+.++ . |+++|..|++++.||+|++|++.+++.+.........
T Consensus 720 ~-~~~~ir~~~~~~~k~~~k~~-~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~- 796 (902)
T 2oaj_A 720 T-GFDDIRLITLGKSKSTHKGF-KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI- 796 (902)
T ss_dssp E-CSSEEEEECTTCCCEEEEEC-SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC-
T ss_pred E-eccceEEEeCccccceeeEc-ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccc-
Confidence 4 48899999999999988764 566666666 5 7899999999999999999999999999887643211
Q ss_pred CCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 1020 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1020 ~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
....+ ...+|.+ +|..|.-. ...++.+..+...+.
T Consensus 797 ---~~~~~--~~~~~~~-~G~~~~~~-~~~e~~~~~~~~~~~ 831 (902)
T 2oaj_A 797 ---AAKYI--TESSVLR-NGDIAIRV-SEFQASLFSTVKEQD 831 (902)
T ss_dssp ---CHHHH--TTCEECT-TSCEEEEC-SSSEEEEEEEESCCC
T ss_pred ---ccccc--cceEEcC-CCCEEEEe-ChhheEEEEEEcCCC
Confidence 11111 1245676 67755544 444566666544443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-58 Score=606.56 Aligned_cols=590 Identities=16% Similarity=0.187 Sum_probs=498.6
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+.+|.+.|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999987655 6889999999999999999 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|+.+++++..+.+|...|.+++|++..++.++++++.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999988777789999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCceeEEEeccc----------cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++.|++||+.+++....+.... .....+.+++|+|++..+++++ ++.+.+||+.++..+..+...
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~- 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG- 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence 5569999999998877765322 1123678899999999999987 689999999999988887632
Q ss_pred CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCc
Q 001386 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1088)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1088)
+...+.+++|+|+++++++++.||.|++|++.++.....+.+|...|.+++++ |++..
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~ 896 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSS 896 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCE
Confidence 23468999999999999999999999999999999999999999999999997 57888
Q ss_pred ccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccC
Q 001386 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQ 780 (1088)
Q Consensus 701 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 780 (1088)
+++++.|+.+++|+.......... .......+.+.+++..++.....+.+.++.......
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 956 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI------------ 956 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE------------
T ss_pred EEEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcceE------------
Confidence 999999999999996532221111 112334566777777777777777777776433211
Q ss_pred CCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001386 781 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 859 (1088)
.. .+...+.+++++|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|++++
T Consensus 957 ------~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~ 1022 (1249)
T 3sfz_A 957 ------DY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSS 1022 (1249)
T ss_dssp ------EE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEEC
T ss_pred ------EE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEc
Confidence 11 1456799999999999999998 89999999999999999999999999999999 899999999
Q ss_pred CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
.||.|++||+.+++.+ .+.+|...|.+++|+|++ .+++++.||+|++||+.+++. .....+|.. .|.+++
T Consensus 1023 ~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~---~v~~~~ 1092 (1249)
T 3sfz_A 1023 EDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERDFTCHQG---TVLSCA 1092 (1249)
T ss_dssp SSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEEEECCSS---CCCCEE
T ss_pred CCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEEEcccCC---cEEEEE
Confidence 9999999999999876 456799999999999976 578899999999999998653 233344443 689999
Q ss_pred EcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecccccc
Q 001386 940 FHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1018 (1088)
Q Consensus 940 fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 1018 (1088)
|+||++++++ +.|+.|++||+.+++++.. ..+|...|++++|||||++|++++.||.|++||+.+++.+..+.+....
T Consensus 1093 ~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp ECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence 9999999999 5789999999999998877 5589999999999999999999999999999999999887665322211
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 001386 1019 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1062 (1088)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~ 1062 (1088)
.. ...+.....+++|+| |+.+|++++ |.|++|++......
T Consensus 1172 ~~-~~~~~~~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A 1172 EG-TATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSS 1211 (1249)
T ss_dssp ------CCSCCCEEEECT-TSSCEEEES--SSEEEBCSSSCBCC
T ss_pred cc-ccccCceEEEEEECC-CCCEEEECC--CeEEEEECCCCcee
Confidence 11 011223456799999 889998885 99999999776543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=548.25 Aligned_cols=555 Identities=11% Similarity=0.108 Sum_probs=466.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCC----CcccceeEeccCCCC-EEEEEecC--CCCcEEEEEEeCC
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 464 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~l~l~s~s~d 464 (1088)
...|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346889999999999999999998 789999999987 5443 78899999 99999999 999 89999999
Q ss_pred CcEEEEeCCCC--------ceeEEeccCCccEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCceEEecCCCCce
Q 001386 465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 532 (1088)
Q Consensus 465 ~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v 532 (1088)
|.|++||+.++ +.+..+..|...|.+++|+ +++.++++++.+ +.|++|| ..+....+..+...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD--FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEe--CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 6778888999999999995 577899999988 6888887 566778888999999
Q ss_pred EEEEEccCCC-EEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccc---cEEEEEEeCC-CCEEEEEeCCCcEEEEEc
Q 001386 533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 533 ~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~s~dg~i~iwd~ 607 (1088)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 6777765 5679999999999999999888 6 8999999999 999999999999999999
Q ss_pred CCCeeeEEE-e---CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccccc----CcceeeeecCCCcce
Q 001386 608 NKVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVT 679 (1088)
Q Consensus 608 ~~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~ 679 (1088)
.+++.+..+ . .+ ...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-------
T ss_pred CCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-------
Confidence 999999888 3 34 3468999999 99999999999999999999887777666553 22333332
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceE
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~ 759 (1088)
+++..+++++.++.+++|++..... ...+ .+|...|.+++| |+ +++++.||.++
T Consensus 307 ----------------~~~~~l~~~~~~g~i~~~d~~~~~~----~~~~--~~~~~~v~~~~~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 307 ----------------TGNGRIISLSLDGTLNFYELGHDEV----LKTI--SGHNKGITALTV-NP---LISGSYDGRIM 360 (615)
T ss_dssp ----------------EETTEEEEEETTSCEEEEETTEEEE----EEEE--CCCSSCEEEEET-TT---TEEEETTSCEE
T ss_pred ----------------CCCCeEEEEECCCCEEEEECCCCcE----EEEE--eCCCCCEEEEEe-cC---cEEECCCCeEE
Confidence 2578899999999999999764221 1122 348899999999 88 99999999999
Q ss_pred EEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC
Q 001386 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 760 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
+|++. ++. ..|...|.++++ +++..+++++ ++.+++||+.+++...
T Consensus 361 ~w~~~---------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~----- 407 (615)
T 1pgu_A 361 EWSSS---------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS----- 407 (615)
T ss_dssp ETTTT---------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-----
T ss_pred EEEch---------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-----
Confidence 99753 011 248899999999 5566677766 9999999987665432
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeC-CCcEEEEEcCCCcee
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQ 917 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~-Dg~i~iwd~~~~~~~ 917 (1088)
.+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++..
T Consensus 408 --~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~ 480 (615)
T 1pgu_A 408 --QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVS 480 (615)
T ss_dssp --CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEE
T ss_pred --CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccc
Confidence 678999999 88888877 88999999999999888887 88999999999 899999999 999999999985422
Q ss_pred eeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEee----------CC
Q 001386 918 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC----------DC 986 (1088)
Q Consensus 918 ~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~----------dg 986 (1088)
. ....++.. .|.+++|+|||++|++ +.|+.|++||+.+++++..+...|...|++++|+| |+
T Consensus 481 ~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 481 F----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp E----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred c----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCC
Confidence 1 34444443 7999999999999999 47899999999999999885544999999999999 99
Q ss_pred CEEEEEeCCCcEEEEEcCCC-ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 987 RMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 987 ~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
++|++++.||.|++||+.++ ..+..+.. +.....+++|+| |+. |++++.||+|++|++..
T Consensus 554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 554 DLVATGSLDTNIFIYSVKRPMKIIKALNA----------HKDGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEETTS----------STTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CEEEEEcCCCcEEEEECCCCceechhhhc----------CccceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 99999999999999999998 55555431 123457789999 778 99999999999999863
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-56 Score=549.85 Aligned_cols=596 Identities=9% Similarity=0.044 Sum_probs=435.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
..+|...|++++|+||+++||+|+.||+|+|||..+++... ...|...|.+++|+| ++ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999988765332 235888999999999 77 799999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce-----------EEecCCCCceEEEEEccC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 540 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 540 (1088)
+.+++++..+. |...|++++|+ +++.++++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTD--ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECC--TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEEC--CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999995 57789999999999999999877643 123557779999999996
Q ss_pred C-CEEEEEeeCCCCceeEEEEeCCCCceeEEEecc---------------ccccccEEEEEEeCCCCEEEEEeCCCcEEE
Q 001386 541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1088)
Q Consensus 541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1088)
+ ..+++++. ++.| +||+++++.++.+..+ ..|...|.+++|+|+|++|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777653 5668 9999999999888876 122367999999999999999999999999
Q ss_pred EEcCCCeeeEEEeC-----CC-----------CCCCCceEEEec----CC-CEEEEEeCC-----CcEEEEeCCCC----
Q 001386 605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPES---- 654 (1088)
Q Consensus 605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iwd~~~~---- 654 (1088)
||+.+++++..... +. +...|.+++|++ ++ .++++|+.+ +.+.+|++...
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 33 567777665 37888885311
Q ss_pred --------------Ccccccc-cccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 655 --------------NSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 655 --------------~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
+....+. .+...+..+.+.+..... +. ...+...+++++.|+.+++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~----------~~--g~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY----------FA--GCHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSH----------HH--HTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCC----------cC--CCCCceeEEEEcCCCcEEEEECCCCC
Confidence 1111111 123334444433210000 00 01244567788889999999974321
Q ss_pred CCcc-eeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 720 ~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
.... .........|...|+++++++.... +|+...... ..+. .+..+|.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~-----------~w~~~~~~~-------------~~~~------~~l~G~~ 435 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPNK-----------LWLGALSAA-------------QNKD------YLLKGGV 435 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEHH-----------HHHHHHHTT-------------BCCC------CSCCCSB
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCHH-----------HHHHHHhcc-------------cCCC------CcccCCc
Confidence 1000 0001112335678998888764332 232110000 0000 0112477
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeE----EE--ec-----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILI 866 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~i~l 866 (1088)
..+.+++|+|++++|++++ |++|++||+.++... .. +. +|...|.+++|+| |+++||+|+.||+|+|
T Consensus 436 ~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~l 514 (902)
T 2oaj_A 436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVL 514 (902)
T ss_dssp CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEE
Confidence 7788899999999999998 999999999887421 11 11 7889999999999 8999999999999999
Q ss_pred EEcCCc---------------------------------------------eeeeeeccccCCeeEEEECCCCCEEEEEe
Q 001386 867 YNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 867 wd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~s~dg~~las~s 901 (1088)
||+.++ +++..+.+|.+.|++|+||||| +||+|+
T Consensus 515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs 593 (902)
T 2oaj_A 515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAY 593 (902)
T ss_dssp EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEE
T ss_pred EEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEe
Confidence 999876 2467888999999999999999 999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCC-CCccCCCCeEEEEEc-----CCC---CEEEE-EeCCeEEEEEc---Ccceeeee
Q 001386 902 GDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELTCLKQ 968 (1088)
Q Consensus 902 ~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~fs-----~dg---~~l~~-~~d~~i~vwd~---~~~~~~~~ 968 (1088)
.|++|+|||+.++.......+.... +|.. .|++++|+ ||| ++|++ +.|++|++||+ .+|++...
T Consensus 594 ~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 594 AAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp TTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred CCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 9999999999886533221223343 5554 89999999 886 78888 57899999999 88888776
Q ss_pred eecCC-----CcCEEEEE-Ee----------------------eCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC
Q 001386 969 WFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1020 (1088)
Q Consensus 969 ~~~~h-----~~~v~~l~-fs----------------------~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1020 (1088)
+. +| .++|..++ |+ ++|..|+++ +..|+||++.++++........
T Consensus 671 ~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~---- 743 (902)
T 2oaj_A 671 LM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYP---- 743 (902)
T ss_dssp EE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSC----
T ss_pred ec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccc----
Confidence 43 44 46777776 76 455545443 8899999999998876653111
Q ss_pred CCccccccce-EEE------ECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 1021 TTSCLHVYPH-AIA------AHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1021 ~~~~~~~~~~-~~~------~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
..+..+ .+. |++ ++..|++++.||+|++|+++..+.
T Consensus 744 ----~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 744 ----LAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp ----EEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred ----eeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence 111111 135 677 788999999999999999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=487.20 Aligned_cols=482 Identities=15% Similarity=0.241 Sum_probs=384.7
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
..+++.+|++.|++++|||||+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 4578899999999999999999 689999999999999999987765 66799999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccC
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGH 484 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~ 484 (1088)
|+|++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.||.|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987655 6789999999999999999 7999999999999999987 667888999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC-CceEEEEEcc--CCCEEEEEeeCCCCceeEEEEe
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWN 561 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd 561 (1088)
...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999652 56799999999999999998887777666555 7899999999 9999999875 56799999
Q ss_pred CCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC--EEEE
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAV 639 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~ 639 (1088)
..+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. ++++
T Consensus 215 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~ 289 (814)
T 3mkq_A 215 YQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIAS 289 (814)
T ss_dssp TTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEE
T ss_pred CCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEE
Confidence 99999999999887 8999999999999999999999999999999999998886643 689999999987 4555
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
++ ++.+.+|++......
T Consensus 290 ~~-~~~~~~~~~~~~~~~-------------------------------------------------------------- 306 (814)
T 3mkq_A 290 GF-DNGFTVLSLGNDEPT-------------------------------------------------------------- 306 (814)
T ss_dssp EE-TTEEEEEECSCCSCC--------------------------------------------------------------
T ss_pred Ee-CCCEEEEEcCCCCce--------------------------------------------------------------
Confidence 54 667888887643211
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccce-EEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
+.++|+|..+++++.+... .++... ....|++..+............+.
T Consensus 307 --------------------~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 356 (814)
T 3mkq_A 307 --------------------LSLDPVGKLVWSGGKNAAASDIFTAV----------IRGNEEVEQDEPLSLQTKELGSVD 356 (814)
T ss_dssp --------------------EEECSSSEEEEECCTTSCTTCEEEEE----------CCSCCCCCSSSCBCCCCEEECCCS
T ss_pred --------------------eEECCCCCEEEECcccccceeeeeee----------cccccccccCccceeeeecCCCCc
Confidence 2233333333333222110 000000 000112222221111111111356
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
..+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++++++.+|.|++|+ .+
T Consensus 357 ~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~ 422 (814)
T 3mkq_A 357 VFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDETGQIKYYK--------NF 422 (814)
T ss_dssp SCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTTCCEEEEE--------TT
T ss_pred cCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CC
Confidence 77899999999999999999999999987654432 35678999999 899999999999999995 45
Q ss_pred ccccCCeeEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-----
Q 001386 879 EGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----- 950 (1088)
Q Consensus 879 ~~h~~~V~~l~~s~dg---~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~----- 950 (1088)
.+|...+.+++|+||| .+|++++.|++|++||+.+++ .+.....+. ..++|+|||++|+++
T Consensus 423 ~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v~~s~dg~~la~~~~~~~ 491 (814)
T 3mkq_A 423 KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDVIWSDNGELVMIVNTNSN 491 (814)
T ss_dssp EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEEEECTTSSEEEEEECCCS
T ss_pred CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEEEEcCCCCEEEEEEcCcc
Confidence 6688889999999998 689999999999999999865 333333332 389999999999997
Q ss_pred -eCCeEEEEEc
Q 001386 951 -HETHLAIYEA 960 (1088)
Q Consensus 951 -~d~~i~vwd~ 960 (1088)
.++.+.+|..
T Consensus 492 ~~~~~~~~~~~ 502 (814)
T 3mkq_A 492 GDEASGYTLLF 502 (814)
T ss_dssp SCSCSEEEEEE
T ss_pred cCCceEEEEEe
Confidence 6666666644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=459.88 Aligned_cols=465 Identities=15% Similarity=0.175 Sum_probs=381.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|.+.|.+++|+|||++||+++.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999987555 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEee
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 549 (1088)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999954 6779999999999999999887 55667788889999999999 8889999875
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
++.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEE
Confidence 5569999999888877777654 46899999999 999999999999999999999999999886644 6899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
++|+|+++++++++.||.|++||..+++....+..
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--------------------------------------------- 268 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--------------------------------------------- 268 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC---------------------------------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec---------------------------------------------
Confidence 99999999999999999999999987654433322
Q ss_pred ccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE-EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCc
Q 001386 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ 786 (1088)
Q Consensus 708 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1088)
+...+.+++|+|+|..+ ++.+.++.+.+|++...
T Consensus 269 -------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 303 (814)
T 3mkq_A 269 -------------------------GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND-------------------- 303 (814)
T ss_dssp -------------------------SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC--------------------
T ss_pred -------------------------CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC--------------------
Confidence 34567888899988753 66666777888874321
Q ss_pred ceeeccCCCCCCCCeeEEEEecCCCEEEEEeC-C---cEEE------EEcCCcee----EEEecCCCCCeEEEEEcCCCC
Q 001386 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-G---VISL------YIVMTFKT----ILTIMPPSPTATSLAFNPHDN 852 (1088)
Q Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-g---~i~i------wd~~~~~~----~~~~~~~~~~i~~l~~sp~d~ 852 (1088)
...+.++|+|+.++++.. . .+.. |++..+.. ...+..+...+.+++|+| ++
T Consensus 304 --------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg 368 (814)
T 3mkq_A 304 --------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NG 368 (814)
T ss_dssp --------------SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TS
T ss_pred --------------CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CC
Confidence 234778899999988762 1 1222 22333322 234455667889999999 89
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 853 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 853 ~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
+++++++ ||.+.+|++...... +.+.|.+++|+|||++|++++.||.|++|+.-. ++.
T Consensus 369 ~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~--- 426 (814)
T 3mkq_A 369 RFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT--- 426 (814)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---
T ss_pred CEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---
Confidence 9999998 899999998754432 456789999999999999999999999996432 222
Q ss_pred CCeEEEEEcCCC---CEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEE------eCCCcEEEEE
Q 001386 933 PSETHIQFHKDQ---TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS------FVDGTLSIHE 1002 (1088)
Q Consensus 933 ~~v~~~~fs~dg---~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~------s~dg~v~vwd 1002 (1088)
..+.+++|+||| ++|++ +.|+.|++||+.+++.+..+. .|.. .++|||||++|+++ +.++.+.+|.
T Consensus 427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID-VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES-SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe-cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 247788999998 45555 789999999999999888743 4443 89999999999999 5555555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-46 Score=421.31 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=267.4
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
.+|.+|.++|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 45789999999999999998 799999999999999999987765 7789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
|++||+|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++.++.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999887655 6789999999999999999 8999999999999999999999999999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccC--------------------CCEEEEE
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 547 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------g~~l~~~ 547 (1088)
|.++.+ .+++.++++++.||.|++||+.+......+..|...|.+++|+|+ |.+|+++
T Consensus 237 v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEE--CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 999988 457789999999999999999999999999999999999999996 6689988
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+. ++.|++||+.++.++..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++++..+..|.. .|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEE
Confidence 75 5569999999999999999988 8999999999999999999999999999999999999987754 6999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeC
Q 001386 628 ICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
++|+|++.+|++|+.||+|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=362.31 Aligned_cols=295 Identities=19% Similarity=0.272 Sum_probs=265.4
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 455688999999999999999999 799999999999999999987755 567999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCc-ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
|+|+|++||+|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 233446789999999999999875 7899999999999999999999999
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+|...|.+++|++ ++.++++|+.||.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+
T Consensus 182 ~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEEC
Confidence 9999999999954 6789999999999999999999999999999999999999999999999986 456999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
++++.+..+.... +...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+|.+|++|+.
T Consensus 256 ~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp TTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcC
Confidence 9998877765322 235799999999999999999999999999999999999987654 6999999999999999999
Q ss_pred CCcEEEEe
Q 001386 643 ENRIKILE 650 (1088)
Q Consensus 643 dg~i~iwd 650 (1088)
|+.|++||
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=360.30 Aligned_cols=295 Identities=15% Similarity=0.233 Sum_probs=265.8
Q ss_pred hhheeecccCCCCceeeeecCC----CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spd----g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
+.+.+.+.+|.+.|++++|+|+ +. +|++|+.|++|+|||+.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 3445677899999999999985 45 799999999999999987754321 1277899999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
.+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ ++++++.|+.|++||+.+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987655 6778889999999999999 89999999999999999999999
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.+..|...|.+++|+ +++++|++++.||.|++||+++++....+..+...|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYS--PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 999999999999994 57789999999999999999999988899999999999999999999999975 556999
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1088)
||+++++....+.+|. ..|.+++|+|++.+|++++.|++|++||+.+++++..+..+.. .|.+++|+|++++|++
T Consensus 233 wd~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVS 307 (321)
T ss_dssp EETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEE
Confidence 9999999999999988 8999999999999999999999999999999999999986644 6999999999999999
Q ss_pred EeCCCcEEEEeCC
Q 001386 640 IANENRIKILETP 652 (1088)
Q Consensus 640 ~~~dg~i~iwd~~ 652 (1088)
++.||.|++||.+
T Consensus 308 ~~~d~~i~vwd~p 320 (321)
T 3ow8_A 308 VGDDQEIHIYDCP 320 (321)
T ss_dssp EETTCCEEEEECC
T ss_pred EeCCCeEEEEeCC
Confidence 9999999999964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=363.49 Aligned_cols=298 Identities=17% Similarity=0.244 Sum_probs=267.7
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
....++|.+|.+.|++++|+|||+ +||+|+.||+|+|||..+++.... +..|...|.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~ 113 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA 113 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence 456788999999999999999998 799999999999999999887654 556889999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCc---ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
|+|+|.+||+|+.|+.+++|++..+.. ......+.+|...|.+++|+|++. .+++++.|++|++||+++++++..
T Consensus 114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence 999999999999999999999975421 223446778999999999999999 799999999999999999999999
Q ss_pred eccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
+.+|...|.++++++++++.+|++|+.||.|++||+++++....+..|...|.+++|+|++.+|++++. ++.|++|
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw 267 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY 267 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence 999999999999988878889999999999999999999999999999999999999999999999986 5569999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
|+++++.+..+..+. ....+.+++|+|++.++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+|++|+++
T Consensus 268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEE
T ss_pred ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEE
Confidence 999988777766443 234789999999999999999999999999999999988876644 69999999999999999
Q ss_pred eCCCcEEEEe
Q 001386 641 ANENRIKILE 650 (1088)
Q Consensus 641 ~~dg~i~iwd 650 (1088)
+.|++|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=352.39 Aligned_cols=293 Identities=18% Similarity=0.304 Sum_probs=256.8
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
...++|.+|++.|++++|||||+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 34578899999999999999999 789999999999999999987765 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~ 483 (1088)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++. ....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999997655 6889999999999999999 89999999999999999874 5577899
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-CCCCceEEEEEcc--CCCEEEEEeeCCCCceeEEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iw 560 (1088)
|...|.+++|+|. ++.+|++|+.||+|++||++.......+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999653 45799999999999999998877665554 4556888899886 7789999876 5679999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC--EEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1088)
|+++++++..+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence 999999999999988 899999999999999999999999999999999999998654 3688999999875 577
Q ss_pred EEeCCCcEEEEeCCC
Q 001386 639 VIANENRIKILETPE 653 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~ 653 (1088)
+|+.+ .+.+|++..
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 77665 567777653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-39 Score=351.04 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=259.1
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+..+|.+|++.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence 3457889999999999999977448999999999999999764432111 11237789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|||++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++++.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987655 6889999999999999999 89999999999999975 6778899999
Q ss_pred CccEEEEeeeeeC----CceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 485 ~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
...|.++.+.+.. ++..+++++.|+.|++||++..+....+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4558999999999999999998888889999999999999999999999986 5679999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC------CCCCCceEEEecCC
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 634 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 634 (1088)
|+.+++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++..+..+..+..+. ....+.+++|+|||
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999998888764 479999999999998888754 59999999888777765431 12357799999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 001386 635 TLLAVIANENRIKILETPES 654 (1088)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~ 654 (1088)
++|++|+.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=365.83 Aligned_cols=305 Identities=17% Similarity=0.260 Sum_probs=264.9
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+.++|.+|.+.|++++|+|+|+ +|++|+.|++|+|||+.+++.+.. +.+|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAF 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEE
T ss_pred EEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEE
Confidence 46688999999999999999998 699999999999999999987755 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCc----ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
+|+|++||+|+.|+.+++||+.+... ......+.+|.+.|.+++|+|++.. .+++|+.|++|++||+.+++++..
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999976431 1223357899999999999998654 699999999999999999999888
Q ss_pred e-----ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 481 F-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 481 ~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+ .+|...|.++++.+. ++.++++|+.||.|++||++. ......+..|...|.+++|+|++++|++++. +
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D 270 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----D 270 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----S
T ss_pred eecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----C
Confidence 7 679999999998643 567999999999999999984 4667788899999999999999999999976 5
Q ss_pred eeEEEEeCCCCceeEEEecccc----ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC--CCCCCCCceE
Q 001386 555 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPRI 628 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v 628 (1088)
+.|++||+++++.+..+..+.. +...+.+++|+|+|+++++|+.||.|++||..+++.+..+.. ..+...|.++
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 5699999999999888876541 113488999999999999999999999999999988877732 2334579999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
+|+|+|++|++|+.|++|++|++...+
T Consensus 351 ~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999999988654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=347.85 Aligned_cols=292 Identities=17% Similarity=0.274 Sum_probs=248.6
Q ss_pred ceeEEEeccccccccEEEEEEeCC----CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTA----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
...+...+|. +.|.+++|+|+ +.+|++|+.|++|++|++.+++........++...|.+++|++++.++++++
T Consensus 23 ~~~~~~~~H~---~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 23 ILFKQEQAHD---DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS 99 (321)
T ss_dssp EEEEETTSSS---SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred heeeecccCC---CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe
Confidence 3344555666 99999999875 5789999999999999998876544433334455799999999999999999
Q ss_pred CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCC
Q 001386 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1088)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 721 (1088)
.|++|++||+.+++.+..+.
T Consensus 100 ~D~~i~lWd~~~~~~~~~~~------------------------------------------------------------ 119 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSID------------------------------------------------------------ 119 (321)
T ss_dssp TTSEEEEEETTTTEEEEEEE------------------------------------------------------------
T ss_pred CCCcEEEEECCCCCEEEEEe------------------------------------------------------------
Confidence 99999999987553221110
Q ss_pred cceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCe
Q 001386 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAV 801 (1088)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1088)
.+...+
T Consensus 120 --------------------------------------------------------------------------~~~~~~ 125 (321)
T 3ow8_A 120 --------------------------------------------------------------------------AGPVDA 125 (321)
T ss_dssp --------------------------------------------------------------------------CCTTCC
T ss_pred --------------------------------------------------------------------------CCCccE
Confidence 133455
Q ss_pred eEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc
Q 001386 802 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 880 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~ 880 (1088)
.+++|+|++++|++++ ++.|++|++.+++....+..+...+.+++|+| ++++|++|+.||.|++||+.+++.+..+.+
T Consensus 126 ~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp CCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 6788999999999987 88999999999999889998999999999999 899999999999999999999999999999
Q ss_pred ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEE
Q 001386 881 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 959 (1088)
Q Consensus 881 h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd 959 (1088)
|..+|.+++|+|++++|++++.|++|++||+.+++ ......+|.. .|.+++|+|++++|++ +.|+.|++||
T Consensus 205 h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~---~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----LAGTLSGHAS---WVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-----EEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-----eeEEEcCCCC---ceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 99999999999999999999999999999999854 3344555654 7999999999999999 5789999999
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
+.+++++..+ .+|...|.+++|+|||++|++++.||+|++||.+
T Consensus 277 ~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 277 VGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999884 5799999999999999999999999999999964
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=359.93 Aligned_cols=286 Identities=18% Similarity=0.289 Sum_probs=266.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|..+|++++|+|++.+|++|+.||+|++||+.+++..+ .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66799999999999999999999999999999999997665 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.+++++..+.+|...|.+++|++ ++.+|++|+.|++|++||++++.....+..|...|.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 6679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC--------------------CCEEEEEeCCCcEEEEEcCCCe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|+.|++||+.+++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4559999999999999998888 89999999996 6789999999999999999999
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeec
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 691 (1088)
++..+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 9999987654 68999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccccccCccceeccc
Q 001386 692 EDPKEDVKPEISVEAENKSEVEKP 715 (1088)
Q Consensus 692 ~~~~~~~~~l~~~~~d~~i~vw~~ 715 (1088)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 56888999999999999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=348.41 Aligned_cols=306 Identities=15% Similarity=0.237 Sum_probs=249.5
Q ss_pred hheeecccCCC-CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
.++++|.+|.+ .|++++|||||+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 46788999988 999999999999 799999999999999988754321 112468999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc---eeEE
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS 480 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~---~~~~ 480 (1088)
|+|||++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++++.|++|++||+.++. ++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 23346889999999999999999 89999999999999998764 4567
Q ss_pred eccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc--eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
+.+|...|.+++|+| ++.+|++++.|+.|++||.+.... ...+..|...|.+++|+|+|++|++++. ++.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999955 667999999999999999987653 4577888999999999999999999986 55699
Q ss_pred EEeCCCC---------------ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe----eeEEE---
Q 001386 559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----LLTTI--- 616 (1088)
Q Consensus 559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~--- 616 (1088)
+||.... .++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+. ....+
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9996322 233344441 24789999999999999999999999999987643 11111
Q ss_pred eCCCCCCCCceEEEecCC-CEEEEEeCCCcEEEEeCCCCCccc
Q 001386 617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
....+...|.+++|+|++ .+|++++.||+|++|+..+++...
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 112344579999999987 599999999999999999876543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=344.42 Aligned_cols=286 Identities=14% Similarity=0.184 Sum_probs=262.2
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 78899999999999999999999999999999999987554 6778999999999999999 899999999999999
Q ss_pred CCCCc----eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 472 AVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 472 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
+.++. ....+.+|.+.|.++.|.+ ++ .+++++.|+.|++||++++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 98763 4567889999999999964 33 58999999999999999999988999999999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|+++++++++.||+|++||+.+++.+..+........|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 4569999999999999999888 8999999999999999999999999999999998888775554456899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
++|+|+|+++++|+.||.|++||..++.....+.+|...|.+++++ +++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999997 678899999999
Q ss_pred ccceecc
Q 001386 708 NKSEVEK 714 (1088)
Q Consensus 708 ~~i~vw~ 714 (1088)
++|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=338.44 Aligned_cols=295 Identities=18% Similarity=0.312 Sum_probs=260.6
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
....++.+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45677899999999999999999 689999999999999999886654 6789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|++++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++++..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 6789999999999999999 8999999999999999999999999999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
..+|.+++|+ +++.++++++.||.|++||+++.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999995 467899999999999999999888766554 45567999999999999999875 5569999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe--
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 641 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 641 (1088)
+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 9999999988873323344444457788999999999999999999999999987644 689999999999999997
Q ss_pred CCCcEEEEeCC
Q 001386 642 NENRIKILETP 652 (1088)
Q Consensus 642 ~dg~i~iwd~~ 652 (1088)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=350.16 Aligned_cols=294 Identities=13% Similarity=0.149 Sum_probs=238.4
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcc------cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..|...|++|+|||||+ +||+|+. |++|++|+..++........ ...+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence 57999999999999999 7889887 67899999888765432111 14458899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccc-eeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++++.|++|++||+.+++++..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 577899999999998875432 224558999999999999999 899999999999999999999999999
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe--cCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iw 560 (1088)
|...|++++|++..+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .++++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999965432 47899999999999999988766544 3455679999999985 56777765 4569999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 638 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 638 (1088)
|+++++.++.+.+|. ..|.+++|+|++ ++|++++.|++|+|||+.+++.+..+ .| ...|.+++|+| ++++|+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEE
T ss_pred ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEE
Confidence 999999999999888 899999999987 57889999999999999999887765 33 44699999998 899999
Q ss_pred EEeCCCcEEEEeCCCC
Q 001386 639 VIANENRIKILETPES 654 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~ 654 (1088)
+++.||+|++|++.+.
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=343.80 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=238.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccc-cceeeeecCCCCCeEEEEECCCCCE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM-LFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
.|...|.+++|||||+ +|++++ |+++++||.... +|+...... .........|...|.+++|+||+ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 5666899999999999 677776 788888874211 111100000 00011123367889999999985 6
Q ss_pred EEEEeCCCEEEEEEccCCCcccce-eEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998865432 23568999999999999999 899999999999999999999999999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CCCCceEEEEEccC-CCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
+++|++.. ..++++++.||+|++||+++.+....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 99996643 2588999999999999999988877654 34557899999995 456777764 5679999999999
Q ss_pred eeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC-EEEEEeCCC
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANEN 644 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg 644 (1088)
.+..+.+|. ..|.+++|+|++ ++|++|+.|++|++||+.+++++. +..| ...|.+++|+|+++ +|++++.|+
T Consensus 249 ~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 249 CVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCC
Confidence 999999988 899999999998 578999999999999999987654 4444 44799999999886 677999999
Q ss_pred cEEEEeCCCCC
Q 001386 645 RIKILETPESN 655 (1088)
Q Consensus 645 ~i~iwd~~~~~ 655 (1088)
+|++|++.+..
T Consensus 323 ~v~~w~v~~~~ 333 (344)
T 4gqb_B 323 QVVHHVVPTEP 333 (344)
T ss_dssp CEEEEECCC--
T ss_pred eEEEEECCCCC
Confidence 99999998653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=349.65 Aligned_cols=314 Identities=16% Similarity=0.216 Sum_probs=229.1
Q ss_pred ccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc------ccceEEEEccCCCCCCCCCC
Q 001386 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS------NGVHLMWRWPRNDLTLSTEV 774 (1088)
Q Consensus 701 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~------dg~v~iw~~~~~~~~~~~~~ 774 (1088)
++.+..+.....|++....+ ..|...|.+++|+|||++|++++. |+.+++|+..
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~---------- 78 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP---------- 78 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC----------
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC----------
Confidence 34445556778888643221 248889999999999999999987 4555555543
Q ss_pred CCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEE----EecCCCCCeEEEEEcCC
Q 001386 775 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPH 850 (1088)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~sp~ 850 (1088)
++...........+|...|.+++|+|++.+++++.+|+|+|||+.+++... ...+|...|++++|+|
T Consensus 79 --------~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 149 (357)
T 4g56_B 79 --------EGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS- 149 (357)
T ss_dssp --------C---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred --------CCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence 332221111112247888999999999988877779999999999877543 3457899999999999
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001386 851 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 929 (1088)
Q Consensus 851 d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 929 (1088)
++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++. ++++++.||+|++||+.+++..... ....+.
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~ 226 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---DFCASD 226 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---CCTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---eecccc
Confidence 899999999999999999999999999999999999999999885 7899999999999999886532211 111222
Q ss_pred cCCCCeEEEEEcCCC-CEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCC
Q 001386 930 TLAPSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 930 ~~~~~v~~~~fs~dg-~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|.+++|+|++ ++|++|+.||+|+|||+.++
T Consensus 227 ---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 227 ---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp ---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 368999999985 56777 4789999999999998877 55899999999999987 57999999999999999999
Q ss_pred ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 1007 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
+++..+. + .-...+++|+|.|+.+|++++.||+|++|++...+.
T Consensus 303 ~~~~~~~------H-----~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 303 EVFRDLS------H-----RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEEECC------C-----SSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred cEeEECC------C-----CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 8775432 1 124567999997889999999999999999976553
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=342.65 Aligned_cols=297 Identities=12% Similarity=0.156 Sum_probs=225.8
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
+...|.+++|+|||++|++++ |+.+++|+... .+|+................+...|.+++|+|++.+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL-----------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGI 96 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE-----------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee-----------eeeccccccCCcceeeeeeccCCCEEEEEEeCCCeE
Confidence 556799999999999777665 77788886321 111111000000000000125678999999999755
Q ss_pred EEEEeCCcEEEEEcCCceeEEE----ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEE
Q 001386 813 LFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 888 (1088)
Q Consensus 813 l~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l 888 (1088)
++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.|+++
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE
Confidence 4444499999999998876543 448999999999999 89999999999999999999999999999999999999
Q ss_pred EECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC-CCEEEE-EeCCeEEEEEcCccee
Q 001386 889 VFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTC 965 (1088)
Q Consensus 889 ~~s~dg-~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d-g~~l~~-~~d~~i~vwd~~~~~~ 965 (1088)
+|+|++ .+|++++.|++|++||+.+++..... .. ..+. ..+.+++|+|+ +++|++ +.|+.|++||+.++++
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--GC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--C-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred EecCCCCCceeeeccccccccccccccceeeee--ec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence 999998 47899999999999999986533211 11 1111 25889999995 567777 4689999999999999
Q ss_pred eeeeecCCCcCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001386 966 LKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1044 (1088)
Q Consensus 966 ~~~~~~~h~~~v~~l~fs~dg-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~ 1044 (1088)
+.. +.+|...|++++|+||| ++|++|+.|++|+|||+.++++.. .. . +.-...+++|+|++..+|++
T Consensus 250 ~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-----~-----H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 250 VLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-----A-----HRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp CEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-----C-----CSSCEEEEEECSSSTTEEEE
T ss_pred EEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-----C-----CCCCEEEEEEeCCCCeEEEE
Confidence 887 45899999999999998 579999999999999999998653 22 1 11345789999955567889
Q ss_pred EeCCCcEEEEeCCCCC
Q 001386 1045 GLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1045 ~~~dg~v~~w~l~~~~ 1060 (1088)
++.||+|++|++....
T Consensus 318 ~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EETTSCEEEEECCC--
T ss_pred EcCCCeEEEEECCCCC
Confidence 9999999999997643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=347.89 Aligned_cols=318 Identities=17% Similarity=0.156 Sum_probs=262.0
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
+..|+.....+.+.+.+|. +.|.+++|+|++++|++|+.||+|++||..+++....+..|.. .|.+++|+|++++
T Consensus 48 ~~~~~~~~~~~~~~l~gH~---~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~ 122 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHS---GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQS 122 (380)
T ss_dssp CCCCCCCCCEEEEEECCCS---SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSE
T ss_pred ccccccceeEEeecccccc---cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCE
Confidence 4457777788888999998 9999999999999999999999999999999999999987654 6899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|++++.|+.+++|++.+..... +...
T Consensus 123 las~~~d~~v~iw~~~~~~~~~---------------------------------------~~~~--------------- 148 (380)
T 3iz6_a 123 VACGGLDSACSIFNLSSQADRD---------------------------------------GNMP--------------- 148 (380)
T ss_dssp EEECCSSSCCEEEECCCCSSCC---------------------------------------CSST---------------
T ss_pred EEEeeCCCcEEEEECCCCcccc---------------------------------------CCcc---------------
Confidence 9999999999999987431100 0000
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSN 796 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1088)
....+ .+
T Consensus 149 -----------------------------------------------------------------------~~~~~--~g 155 (380)
T 3iz6_a 149 -----------------------------------------------------------------------VSRVL--TG 155 (380)
T ss_dssp -----------------------------------------------------------------------TCCBC--CC
T ss_pred -----------------------------------------------------------------------ceeec--cC
Confidence 00000 13
Q ss_pred CCCCeeEEEEecC-CCEEEEEe-CCcEEEEEcCCceeEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 001386 797 SQEAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 869 (1088)
Q Consensus 797 ~~~~v~~~~~s~d-g~~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~ 869 (1088)
|...+.++.|+|+ +..|++++ |++|++||+.+++.+..+ .+|...|.+++|++.++.++++|+.||+|++||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 6777778888886 45688887 899999999999998877 5788999999998767899999999999999999
Q ss_pred C-CceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 870 R-SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 870 ~-~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
+ +++.+..+.+|.+.|.+++|+|++++|++++.||+|++||+.+++......... .........|.+++|+|+|++|+
T Consensus 236 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp TTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC-SSSCCSSCSCSEEEECSSSSEEE
T ss_pred CCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc-cccccccCceEEEEECCCCCEEE
Confidence 8 457888999999999999999999999999999999999999876432211110 00011113589999999999999
Q ss_pred EE-eCCeEEEEEcCcceeeeee---ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 949 LV-HETHLAIYEAEELTCLKQW---FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 949 ~~-~d~~i~vwd~~~~~~~~~~---~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
++ .|+.|++||+.+++.+..+ ..+|...|.+++|+|||++|++|+.||+|++|++....
T Consensus 315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 95 7899999999999887664 26799999999999999999999999999999998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=351.66 Aligned_cols=327 Identities=15% Similarity=0.218 Sum_probs=266.9
Q ss_pred cCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEc----cCCCccc---ceeEecc----------CCCCEEEEEecCCCC
Q 001386 393 RDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCK 454 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~----~~~~~~~---~~~~~~~----------h~~~v~~~~~s~d~~ 454 (1088)
..|.+.|.+++|+|+|+ +||+|+.||.|++||+ .+++.+. ....+.. |...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34779999999999999 9999999999999999 8876200 1112222 688999999999999
Q ss_pred cEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCc---
Q 001386 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--- 531 (1088)
Q Consensus 455 ~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 531 (1088)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 78889999999999999999954 6789999999999999999998888877777666
Q ss_pred ------------eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC
Q 001386 532 ------------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1088)
Q Consensus 532 ------------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1088)
+.+++|++++. +++++. ++.|++||+.+++.+..+..|. ..|.+++|+|+++++++++.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETT
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCC
Confidence 89999999865 555554 5569999999999999998887 899999999999999999999
Q ss_pred CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcce
Q 001386 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 679 (1088)
+.|++||+.+++.+..+..
T Consensus 269 ~~i~i~d~~~~~~~~~~~~------------------------------------------------------------- 287 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFYG------------------------------------------------------------- 287 (425)
T ss_dssp SCEEEECSSSBSCSEEECC-------------------------------------------------------------
T ss_pred CEEEEEECCCCccceEecC-------------------------------------------------------------
Confidence 9999999887633332221
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceE
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~ 759 (1088)
T Consensus 288 -------------------------------------------------------------------------------- 287 (425)
T 1r5m_A 288 -------------------------------------------------------------------------------- 287 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC
Q 001386 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 760 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
|...|.+++|+|++ ++++++ ++.|++||+.+++.+..+..|
T Consensus 288 -------------------------------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 288 -------------------------------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp -------------------------------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred -------------------------------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence 33345555566665 555554 566666666666666777778
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce--------------------eeeeeccccC--CeeEEEECCCCCE
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDALNI 896 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~dg~~ 896 (1088)
...+.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|.+++|+|++++
T Consensus 330 ~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 330 GVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp TCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred CccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence 88899999999 78899999999999999998888 8899999977 9999999999999
Q ss_pred EEEEeCCCcEEEEEcC
Q 001386 897 LVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 897 las~s~Dg~i~iwd~~ 912 (1088)
|++++.||.|++||++
T Consensus 409 l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEESSSCCEEEECC
T ss_pred EEEEecCceEEEEeec
Confidence 9999999999999986
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=332.33 Aligned_cols=291 Identities=12% Similarity=0.232 Sum_probs=243.4
Q ss_pred eeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCC-----CeeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
+..++.+|. +.|.+++|+|++ ++|++++.|++|++|++.. +.++..+..|.. .|.+++|+|++++|+++
T Consensus 9 l~~~l~gH~---~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 9 LRGTLEGHN---GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH--IVQDCTLTADGAYALSA 83 (319)
T ss_dssp EEEEECCCS---SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS--CEEEEEECTTSSEEEEE
T ss_pred EEEEEcccc---ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc--cEEEEEECCCCCEEEEE
Confidence 455778888 999999999965 8999999999999999864 345566776644 68999999999999999
Q ss_pred eCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCC
Q 001386 641 ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1088)
Q Consensus 641 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 720 (1088)
+.|++|++||+.+++.+..+.
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~----------------------------------------------------------- 104 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFV----------------------------------------------------------- 104 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-----------------------------------------------------------
T ss_pred eCCCEEEEEECCCCCeeEEEc-----------------------------------------------------------
Confidence 999999999987553221110
Q ss_pred CcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCC
Q 001386 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEA 800 (1088)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1088)
+|...
T Consensus 105 ---------------------------------------------------------------------------~h~~~ 109 (319)
T 3frx_A 105 ---------------------------------------------------------------------------GHKSD 109 (319)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred ---------------------------------------------------------------------------cCCCc
Confidence 26677
Q ss_pred eeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCC-----CCcEEEEEeCCCeEEEEEcCCcee
Q 001386 801 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-----DNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~-----d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
|.+++|+|++.++++++ |++|++||+. ++.+..+.+|...|.+++|+|. ++.++++|+.|+.|++||+.+++.
T Consensus 110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 110 VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 88888888888888887 7888888886 5667788899999999999983 234899999999999999999999
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCe
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 954 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~ 954 (1088)
...+.+|...|.+++|+|+|++|++++.||+|++||+.+++.. .....+ ..|.+++|+|++.+|+++.++.
T Consensus 189 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~----~~v~~~~~sp~~~~la~~~~~~ 259 (319)
T 3frx_A 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQ----DEVFSLAFSPNRYWLAAATATG 259 (319)
T ss_dssp EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----EEEECC----SCEEEEEECSSSSEEEEEETTE
T ss_pred heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----EEecCC----CcEEEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999999999999999999999999986532 222222 2599999999999999998999
Q ss_pred EEEEEcCcceeeeeee-------cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 955 LAIYEAEELTCLKQWF-------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 955 i~vwd~~~~~~~~~~~-------~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+++|++..+..+..+. ..|...+.+++|||||++|++|+.||+|+|||+.++
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999999887766543 234678999999999999999999999999998775
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=379.40 Aligned_cols=523 Identities=13% Similarity=0.057 Sum_probs=378.0
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
+...+.+++|||+ + ||..+. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457899999964 3 454444 789999998886543 667999999999999999999
Q ss_pred EEeCC------CEEEEEEccCCCcccceeEeccCCCCE-------EEEEecCCCCcEEEEEEeCC------CcEEEEeCC
Q 001386 413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 473 (1088)
Q Consensus 413 s~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~s~d------~~i~vwd~~ 473 (1088)
+++.+ ..|++||+.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999988752 2577888888 9999999998 67777754 358888887
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEEec------------CCeEEEEECCCCCceEEecCCCCceEEEEEccCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 541 (1088)
+++.. .+..+. ...++|+ + | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~s--p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFA--D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEE--T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeC--C-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77654 333332 2345564 4 5 7787753 345667754444555556788889999999988
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC
Q 001386 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1088)
..++++.. ++.+.+|.... +.....+..+. .+...+|+|+|++++.+. ++.|++|++... .+..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCc
Confidence 44444432 23355565432 33445555444 355679999999998874 899999999544 344444321
Q ss_pred ---------CCCCCceEEEe-cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceee
Q 001386 621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1088)
Q Consensus 621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 690 (1088)
+...+.+++|+ |||+.+++++ ++.+.+|+...+.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 7889999877543211 00
Q ss_pred cCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccc-cEEEEEEecCCceEEEeccccceE-EEEccCCCC
Q 001386 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 768 (1088)
Q Consensus 691 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~dg~v~-iw~~~~~~~ 768 (1088)
.+.. .+..++|+ +|+.++.++.++.+. +|++....
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~- 370 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK- 370 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-
Confidence 1233 67788999 999898888777676 77654321
Q ss_pred CCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEE
Q 001386 769 TLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 847 (1088)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 847 (1088)
... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.+++|
T Consensus 371 ------------------~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 371 ------------------AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp ------------------EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred ------------------ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence 111 11 3667899999999999999987 789999999999988888788899999999
Q ss_pred cCCCCcEEEEEeCCC----------eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001386 848 NPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 917 (1088)
Q Consensus 848 sp~d~~~lasg~~dg----------~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~ 917 (1088)
|| |+++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+.......
T Consensus 429 Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~ 506 (1045)
T 1k32_A 429 SD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 506 (1045)
T ss_dssp CT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred CC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccc
Confidence 99 899888887654 99999999988 6778889888999999999999999999888888876533210
Q ss_pred ee-----eee--e---------------------cCCCC-------ccCCCCeEEEEEcCCCCEEEE------------E
Q 001386 918 TC-----RSL--Q---------------------TPDGV-------MTLAPSETHIQFHKDQTRFLL------------V 950 (1088)
Q Consensus 918 ~~-----~~~--~---------------------~~~~~-------~~~~~~v~~~~fs~dg~~l~~------------~ 950 (1088)
.. ..+ . ...+. ......+..++|+|||+++++ +
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~ 586 (1045)
T 1k32_A 507 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 586 (1045)
T ss_dssp CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHC
T ss_pred cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccc
Confidence 00 000 0 00010 001235789999999998875 1
Q ss_pred --eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 951 --HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 951 --~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
....+.+||+.+++.... . ..+..++|||||++|++++.+ .|++||+.+++
T Consensus 587 ~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 587 APEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 234789999998875433 2 568899999999999998866 89999999887
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=338.36 Aligned_cols=301 Identities=17% Similarity=0.273 Sum_probs=244.6
Q ss_pred hheeecccCCCCceeeee-----cC-CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCC
Q 001386 325 TVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~-----sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 398 (1088)
.+..+|.+|++.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCc
Confidence 456789999999999999 77 888 7999999999999999875432110 0112237899999
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|++|++||+. +...
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECK 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCce
Confidence 9999999999999999999999999999987655 6889999999999999999 89999999999999987 4444
Q ss_pred EEec---cCCccEEEEeeeeeCC--------ceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 479 YSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 479 ~~~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.... +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 4433 7889999999976431 268999999999999994 445566778899999999999999999999
Q ss_pred eeCCCCceeEEEEeCC-CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE--EEeCC-----
Q 001386 548 GTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG----- 619 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~----- 619 (1088)
+. ++.|++||+. .......+. +. ..|.+++|+|++.++++ +.|+.|++|++.+++... .+...
T Consensus 232 s~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 232 GK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp ET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred cC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 86 5679999994 444444443 22 56999999999887765 457889999998876554 33311
Q ss_pred ----CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 23446889999999999999999999999998643
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=343.58 Aligned_cols=303 Identities=15% Similarity=0.236 Sum_probs=247.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
+|.+.|.+++|||||+ +||+|+ +++++||++.+|+.+.......-. ..............+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999999 688876 689999999999876542110000 0000000111112344569999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
|+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ .+++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999886544 6889999999999999999 89999999999999999999888776 56778999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
++++. ++.++++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 88652 6789999999999999999988776655 467789999999999999999976 55699999875
Q ss_pred C------------ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 565 ~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
. .+...+.+|. ..|.+++|+|++.++++++.|+.|++||..+++.+..+..|.. .|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEEecC
Confidence 3 3455667777 8899999999999999999999999999999999999987754 689999886
Q ss_pred ------CCCEEEEEeCCCcEEEEeCCC
Q 001386 633 ------NGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 633 ------~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
++++|++|+.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=352.70 Aligned_cols=345 Identities=13% Similarity=0.174 Sum_probs=282.0
Q ss_pred eeecc--cCCCCceeeeecCCCCeEEEEEcccCcEEEEec----CCCcceeeeceeeeeeccccccce-eeeecCCCCCe
Q 001386 327 AQTLI--EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSV 399 (1088)
Q Consensus 327 ~~~l~--~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~----~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~h~~~V 399 (1088)
.+.+. .|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+...... .. ....+. .....+|.+.|
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~v 111 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII-AE---LRHPFALSASSGKTTNQV 111 (425)
T ss_dssp CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEE-EE---EECCCCCC------CBCE
T ss_pred hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccc-cc---ccccccccccccCCCCce
Confidence 34444 455899999999999845899999999999999 888732110000 00 000000 00123378899
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
.+++|+|++++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++.+.
T Consensus 112 ~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEE
Confidence 9999999999999999999999999 4444333 6789999999999999999 89999999999999999999999
Q ss_pred EeccCCcc---------------EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEE
Q 001386 480 SFEGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 480 ~~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 544 (1088)
.+..+... +.+++|.+. ..+++++.||.|++||++.......+..+...|.+++|+|++++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 99888776 888888653 368999999999999999998888888999999999999999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCC
Q 001386 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1088)
++++. ++.|++||+.+++.+..+.+|. ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.. .
T Consensus 263 ~~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~ 332 (425)
T 1r5m_A 263 LSASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--P 332 (425)
T ss_dssp EEEET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--C
T ss_pred EEEcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--c
Confidence 99975 4559999999999999998877 899999999999 999999999999999999999999886644 6
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCCC--------------------cccccccccC--cceeeeecCCCcceecc
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~~p~~~~~~~~ 682 (1088)
+.+++|+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|+
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------- 403 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN--------- 403 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC---------
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc---------
Confidence 8999999999999999999999999999877 6677777765 88888887
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
++++++++++.|+.+++|++.
T Consensus 404 -------------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 -------------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------------TTSSEEEEEESSSCCEEEECC
T ss_pred -------------CCCceEEEEecCceEEEEeec
Confidence 678889999999999999964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=336.37 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=260.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|...|.+++|+||+++||+|+.||+|++||..+++... .+..|...|.+++|+|++. .+++++.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999999886544 5778999999999999999 899999999999999
Q ss_pred CCCC------ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc--CCCE
Q 001386 472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 543 (1088)
Q Consensus 472 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~ 543 (1088)
+... .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...|.+++|+| +|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34567888999999999954 667999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
+++++. ++.|++||+++++.+..+.+|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 4559999999999999999888 899999999999999999999999999999998888776655444
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+ |+++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999888999999999999997 67889999
Q ss_pred cccCccceecc
Q 001386 704 VEAENKSEVEK 714 (1088)
Q Consensus 704 ~~~d~~i~vw~ 714 (1088)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=335.61 Aligned_cols=296 Identities=17% Similarity=0.204 Sum_probs=233.5
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeee-c-CCCCCeEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-R-DPGVSVNRV 402 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~h~~~V~~l 402 (1088)
.++++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++...... .+ . +|...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEE
Confidence 456789999999999999997 6899999999999999876421110 13 3 399999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCC----cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC-C--
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-G-- 475 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-~-- 475 (1088)
+|+|++++||+|+.|++|++||+..+. .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. +
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999996432 1233446889999999999999999 899999999999999943 2
Q ss_pred -ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC--CceEEecCCCCceEEEEEccC--CCEEEEEeeC
Q 001386 476 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS 550 (1088)
Q Consensus 476 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~ 550 (1088)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 46778899999999999965 6679999999999999998766 456678889999999999998 678998876
Q ss_pred CCCceeEEEEeCCCC--------ceeEEEec-cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee--eEEEeCC
Q 001386 551 KEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG 619 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~ 619 (1088)
++.|++||+.++ .....+.+ |. ..|.+++|++++ ++++++.||.|++|+..+++. ..... .
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~ 291 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-L 291 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-C
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-c
Confidence 556999998764 33444443 44 899999999764 899999999999999988742 32221 2
Q ss_pred CCCC-CCceEEEec--CCCEEEEEeCCCcEEEEeCCC
Q 001386 620 GGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 620 ~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
.+.. .|.+++|+| ++++|++++.||+|++|++..
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2233 689999999 789999999999999999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=329.02 Aligned_cols=269 Identities=19% Similarity=0.252 Sum_probs=241.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|.+.|.+++|+||+++||+++.||+|++||+.+++.++ .+..|..+|.+++|+|+++ ++++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 77899999999999999999999999999999999986555 6789999999999999999 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEcc-CCCEEEEEee
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 549 (1088)
+.+++++..+.+|...|.+++|+| ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999955 667999999999999999988744 457788999999999999 6789999876
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++++..+..|.. .|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEE
Confidence 5569999998887766665433 36788899986 678999999999999999999999999987754 6899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 675 (1088)
++|+|++++|++++.||+|++||..+++....+..+...+.+++++|.
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 999999999999999999999999999999999999999999998853
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=353.97 Aligned_cols=350 Identities=14% Similarity=0.200 Sum_probs=275.9
Q ss_pred CCceeeeecCCCCeEEEEE----------cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g----------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..|.+++|||+|+.++|+| +.|+.|+|||+.+++..... ....|...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence 4899999999998689999 88999999999988633110 02358899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCc-ccceeEeccCCCCEEEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCc------
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------ 476 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~s~d~~i~vwd~~~~~------ 476 (1088)
+|++++||+++.||.|++||+.+... ......+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.+++
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence 99999999999999999999987211 1234468899999999999998 66 79999999999999999887
Q ss_pred eeE---EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC------CCceEEEEEccCC-CEEEE
Q 001386 477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS 546 (1088)
Q Consensus 477 ~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g-~~l~~ 546 (1088)
... .+.+|...|.+++|++. ++.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 333 34679999999999654 2579999999999999999998888877776 6789999999998 57777
Q ss_pred EeeCCCCceeEEEEeCCCC-ceeEEEe-ccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
++.++ .++.|++||++++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+..
T Consensus 233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-- 306 (416)
T 2pm9_A 233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-- 306 (416)
T ss_dssp EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--
T ss_pred EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--
Confidence 76532 1236999999986 5666676 676 8999999999 899999999999999999999999999987654
Q ss_pred CCceEEEecCC-CEEEEEeCCCcEEEEeCCCCCccccccc--------------------ccCcceeeeecCCCcceecc
Q 001386 624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--------------------LSDNLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 624 ~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~p~~~~~~~~ 682 (1088)
.|.+++|+|++ .++++++.|+.|++|++.+......... +...+..+.+ +.... ..
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~ 383 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTW--YG 383 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCST--TC
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCcc--cc
Confidence 68999999998 8999999999999999998764433221 1111111111 00000 00
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
.....+.| +++|+++++++.|+.|++|++..
T Consensus 384 ~~~~~~~~----s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 384 EPSPAAHW----AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCSCCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred CCccceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence 01112334 68999999999999999999763
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=333.78 Aligned_cols=303 Identities=18% Similarity=0.259 Sum_probs=260.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 4456899999999999999985348999999999999999887644321 12237889999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~-~~~~~ 483 (1088)
+|||++|++++.|+.|++|+...+.... ....+...+..+.++++++ .+++++.|+.+++||+...... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999999876444 5667888999999999999 7999999999999998766543 44578
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|...+..++|.+.....++++++.|+.|++||+++.+....+..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999976 5679999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-------CCCCCCceEEEecCCCE
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL 636 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~ 636 (1088)
+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+... .+...|.+++|+|+|++
T Consensus 246 ~~~~~~~~~~~~----~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGGD----IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECSS----CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCCc----eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 999998887654 799999999865 566677999999999998887776532 34457899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCC
Q 001386 637 LAVIANENRIKILETPESN 655 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~ 655 (1088)
|++|+.||.|+|||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998774
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=333.19 Aligned_cols=324 Identities=13% Similarity=0.163 Sum_probs=273.6
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
|.+.|.+++|||||+ +++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 455899999999999 677777667666665444322211 446999999999999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEec--cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEEeccCCccE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 488 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~~v 488 (1088)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655554554 7999999999999999 89999999999999999887 567788899999
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999954 6789999999999999999999888888889999999999999999999875 556999999999888
Q ss_pred EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77753 3 68999999999999999999999999999988764 34333 346899999999999999999999999
Q ss_pred EeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec
Q 001386 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1088)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 728 (1088)
|++.+++.....
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999866433110
Q ss_pred CCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
.+...+.+++|+|+++++++++.||.+++|++
T Consensus 304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14567889999999999999999999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=332.44 Aligned_cols=299 Identities=16% Similarity=0.201 Sum_probs=239.9
Q ss_pred cccc-cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 732 ~~~~-~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
+|.. .+..++|+|+|++|++++.|+.|++|++..+.. .... ....+|...|.+++|+|++
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------------------~~~~-~~~~~h~~~v~~~~~sp~g 73 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------------------ICKS-VLSEGHQRTVRKVAWSPCG 73 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------------------EEEE-EECSSCSSCEEEEEECTTS
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------------------eeee-eeccccCCcEEEEEECCCC
Confidence 3666 899999999999999999999999999764321 1111 1112589999999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCc--eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeeccccCC
Q 001386 811 AYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR 884 (1088)
Q Consensus 811 ~~l~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~---~~~~~l~~h~~~ 884 (1088)
++|++++ |+++++||..++ +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+|...
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 9999998 899999999876 46788999999999999999 8999999999999999999875 456778899999
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCc-
Q 001386 885 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE- 962 (1088)
Q Consensus 885 V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~- 962 (1088)
|.+++|+|++++|++++.|++|++||+.+++. .+.....+|.. .|.+++|+|+|++|++ +.|++|++||...
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence 99999999999999999999999999987542 23444556654 7999999999999999 5789999999632
Q ss_pred --------------ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE----EEeccccccCCCCcc
Q 001386 963 --------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ----CRILSTAYLRPTTSC 1024 (1088)
Q Consensus 963 --------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~----~~~~~~~~~~~~~~~ 1024 (1088)
.+++..+...|...|.+++|++++..|++++.|+.|++|+..++... ..+.... .. +
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~--~ 301 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL---HQ--A 301 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE---TT--S
T ss_pred CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee---cc--c
Confidence 23344444458999999999999999999999999999998765321 1111000 01 1
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1025 ~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
+.-...+++|+|+++.+|++|+.||+|++|++.....
T Consensus 302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 2234578999995446999999999999999977654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=371.35 Aligned_cols=529 Identities=10% Similarity=0.021 Sum_probs=375.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC------CCcEE
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 468 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~------d~~i~ 468 (1088)
+...+.+.+||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|+.++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 557889999995 58888876 68999999987632 4778999999999999999 5666543 34799
Q ss_pred EEeCCCCceeEEeccCCccE-------EEEeeeeeCCceEEEEEecC------CeEEEEECCCCCceEEecCCCCceEEE
Q 001386 469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
+||+.+++ ...+..|...+ ..++|+ +||+++++++.+ ..|..|++..+........ ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~S--pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFD--PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEEC--TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCC--CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCC---Cccee
Confidence 99988876 57788888888 888885 466777777754 3577777766544332222 23467
Q ss_pred EEccCCCEEEEEeeCCC--------CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
+|+| | +++++..+.+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12234455433324445556666 88999999988 66667788899999986
Q ss_pred CC-CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCC
Q 001386 608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
.. +.....+..+. .+...+|+|||+.++.+. ++.|.+|+..... +..+..+...
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~-------------------- 286 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE-------------------- 286 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC--------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc--------------------
Confidence 53 44445554433 367789999999998884 7899999984321 1111110000
Q ss_pred ceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEe-cCCceEEEeccccceEEEEccC
Q 001386 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
. .... ..+...+..++|+ |||+.+++++ ++.+.+|++..
T Consensus 287 ---------------------~-------------~~~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 287 ---------------------S-------------PEDR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ---------------------B-------------CCSE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ---------------------c-------------cccc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 0 0000 0144567789999 9999888877 77888887543
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC-CeeEEEEecCCCEEEEEe-CCcEE-EEEcCCceeEEEecCCCCCe
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSAS-GGVIS-LYIVMTFKTILTIMPPSPTA 842 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~dg~~l~~~~-dg~i~-iwd~~~~~~~~~~~~~~~~i 842 (1088)
+.. .. +. .+.. .+..++|+ ||+.+++++ ++.+. +|++.+++.. .+.+|...+
T Consensus 327 ~~~-------------------~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~ 381 (1045)
T 1k32_A 327 TYV-------------------LK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNV 381 (1045)
T ss_dssp SBE-------------------EE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSE
T ss_pred Cce-------------------EE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccce
Confidence 211 11 11 2555 78899999 999999887 45687 8899877654 444777899
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC----------cEEEEEcC
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFVWDVD 912 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg----------~i~iwd~~ 912 (1088)
..++||| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++||+.
T Consensus 382 ~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 382 FAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9999999 899999999999999999999998888878999999999999999999887654 89999999
Q ss_pred CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCccee--------------------------
Q 001386 913 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC-------------------------- 965 (1088)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~-------------------------- 965 (1088)
+++. .....+.. .+..++|+|||++|+.+ .++...+|+......
T Consensus 461 ~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1045)
T 1k32_A 461 GRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 531 (1045)
T ss_dssp TTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred CCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcC
Confidence 8641 12222222 47889999999999984 445555555332211
Q ss_pred ----------------eeeeecCCCcCEEEEEEeeCCCEEEE-------------EeCCCcEEEEEcCCCceEEEecccc
Q 001386 966 ----------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRILSTA 1016 (1088)
Q Consensus 966 ----------------~~~~~~~h~~~v~~l~fs~dg~~l~s-------------~s~dg~v~vwd~~~~~~~~~~~~~~ 1016 (1088)
....+..|.+.+..++|+|||+++++ ......|.+||+.+++......
T Consensus 532 ~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--- 608 (1045)
T 1k32_A 532 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN--- 608 (1045)
T ss_dssp GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE---
T ss_pred ccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeec---
Confidence 01112346678999999999987775 1234578889999987542221
Q ss_pred ccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1017 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
....++|+| ||+.|++++.| .|++|++....
T Consensus 609 -----------~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 609 -----------NLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp -----------EEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred -----------CcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 134578999 89999988866 89999996644
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=323.68 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=232.5
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
+.+.++.+.+|. ..|.+++|+|+ +|++++.|++|++||+.++ +.+..+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677888888 89999999987 9999999999999999875 4455553322455799999999999999999
Q ss_pred CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCC
Q 001386 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1088)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 721 (1088)
.|++|++|+........ .
T Consensus 78 ~D~~v~iw~~~~~~~~~-~------------------------------------------------------------- 95 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT-F------------------------------------------------------------- 95 (330)
T ss_dssp TTSCEEEEEC--------C-------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc-c-------------------------------------------------------------
Confidence 99999999976321000 0
Q ss_pred cceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCe
Q 001386 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAV 801 (1088)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1088)
....+ .. + .+|...|
T Consensus 96 -----------------------~~~~~---------~~-------------------------------~--~~h~~~V 110 (330)
T 2hes_X 96 -----------------------EMDLL---------AI-------------------------------I--EGHENEV 110 (330)
T ss_dssp -----------------------CCEEE---------EE-------------------------------E--C----CE
T ss_pred -----------------------cceeE---------EE-------------------------------E--cCCCCcE
Confidence 00000 00 0 0377788
Q ss_pred eEEEEecCCCEEEEEe-CCcEEEEEcCC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc--ee
Q 001386 802 PCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EV 874 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~ 874 (1088)
.+++|+|++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||..++ ++
T Consensus 111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeE
Confidence 8888888888888887 78888888842 356778889999999999999 8999999999999999999876 67
Q ss_pred eeeeccccCCeeEEEECCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeecCCC-CccCCCCeEEEEEcCCCCEEE
Q 001386 875 ISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~d--g~~las~s~Dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
+..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ....+.....+ |. ..|.+++|++++.++.
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~~l~s 266 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNGLIAS 266 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTSCEEE
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCCEEEE
Confidence 8899999999999999998 77999999999999999975321 11123333333 43 3799999998775444
Q ss_pred EEeCCeEEEEEcCcce--eeeeeecCCCc-CEEEEEEee--CCCEEEEEeCCCcEEEEEcCC
Q 001386 949 LVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 949 ~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
.+.|+.|++||..+++ .......+|.. .|.+++|+| |+++|++|+.||+|++|++.+
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4789999999998874 34444567876 899999999 789999999999999999865
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=322.20 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=259.1
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 378999999999999999999999999999999999887554 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|+.+++++..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+..+...|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999955 6679999999999999999999988899999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 4569999999998887765433 36899999999999999999999999999999999999887654333334445
Q ss_pred e-cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccc--cC
Q 001386 631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 707 (1088)
Q Consensus 631 s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d 707 (1088)
+ +++.++++++.||.|++||+.+++.+..+.+|.+.|.+++++ |++..+++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678899999999999999999999999999999999999998 5567777775 68
Q ss_pred ccceecccc
Q 001386 708 NKSEVEKPL 716 (1088)
Q Consensus 708 ~~i~vw~~~ 716 (1088)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=326.53 Aligned_cols=292 Identities=12% Similarity=0.178 Sum_probs=230.9
Q ss_pred ceeEEEeccccccccEEEEEE-----eC-CCCEEEEEeCCCcEEEEEcCCC-------eeeEEEeCCCCCCCCceEEEec
Q 001386 566 AIKRTYQGLQLQHNSVSVVHF-----DT-AKDQILAAGDDHVIKIWDMNKV-------QLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
+....+.+|. ..|.+++| ++ ++++|++|+.|++|++||+.++ .+...+..|. ..|.+++|+|
T Consensus 12 ~~~~~l~gH~---~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~ 86 (343)
T 2xzm_R 12 VKRGILEGHS---DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN--HFVSDLALSQ 86 (343)
T ss_dssp EEEEEEECCS---SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS--SCEEEEEECS
T ss_pred eeeeeeccch---hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC--CceEEEEECC
Confidence 3456778888 89999999 66 8999999999999999999753 3455666554 4699999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
++.++++++.|++|++||+.+++.+..+.
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--------------------------------------------------- 115 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFV--------------------------------------------------- 115 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEE---------------------------------------------------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEc---------------------------------------------------
Confidence 99999999999999999987653221111
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeecc
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDT 792 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1088)
T Consensus 116 -------------------------------------------------------------------------------- 115 (343)
T 2xzm_R 116 -------------------------------------------------------------------------------- 115 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEe---cCCCCCeEEEEEcCCCC----------cEEEEE
Q 001386 793 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDN----------NVIAIG 858 (1088)
Q Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~----------~~lasg 858 (1088)
+|...|.+++|+|++++|++++ |++|++||+... ..... ..|...|.+++|+| ++ .+++++
T Consensus 116 ---~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~ 190 (343)
T 2xzm_R 116 ---GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASV 190 (343)
T ss_dssp ---CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEE
T ss_pred ---CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEE
Confidence 1555666677777777777666 677777776632 22222 26788999999999 55 799999
Q ss_pred eCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEE
Q 001386 859 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 938 (1088)
Q Consensus 859 ~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 938 (1088)
+.||.|++|| .+++....+.+|...|.+++|+|+|++|++++.||+|++||+...... ....... ..|.++
T Consensus 191 ~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~----~~v~~v 261 (343)
T 2xzm_R 191 GWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP----QREFDAG----STINQI 261 (343)
T ss_dssp ETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC----SEEEECS----SCEEEE
T ss_pred cCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc----ceeecCC----CcEEEE
Confidence 9999999999 456777889999999999999999999999999999999999543211 1111111 258999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCcceeee--eee----------cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 939 QFHKDQTRFLLVHETHLAIYEAEELTCLK--QWF----------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 939 ~fs~dg~~l~~~~d~~i~vwd~~~~~~~~--~~~----------~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+|+|++.+++++.|+.|++||+.+++... .+. .+|...|.+++|+|||++|++|+.||+|++|++.++
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 99999999999999999999998876544 221 267889999999999999999999999999998876
Q ss_pred c
Q 001386 1007 E 1007 (1088)
Q Consensus 1007 ~ 1007 (1088)
.
T Consensus 342 ~ 342 (343)
T 2xzm_R 342 A 342 (343)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=343.10 Aligned_cols=353 Identities=13% Similarity=0.129 Sum_probs=279.2
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.+++++|+|+|+ +|++|+.|+.|++||+.+++.... +..| ..+...+|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 566899999999 589999999999999998876543 3334 4555668899999999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
.||.|++||+.+++... .+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876544 5679999999999999999 899999999999999999999999999999999999954
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecC---CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1088)
++.+|++++.||.|++||+++.+....+.. +...+.++++.+.+...+ ..
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~~ 244 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------HE 244 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------GG
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------ee
Confidence 678999999999999999999888777764 445677777766542221 11
Q ss_pred ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeC
Q 001386 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILET 651 (1088)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~ 651 (1088)
.+ ...+.+++|+|+++++++++.||.|++||+.+++.+..+... +...+.+++|+|+++ +|++++.||.|++||+
T Consensus 245 ~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 245 IS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp GC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred cc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence 12 267888899999999999999999999999999888777542 234689999999999 9999999999999999
Q ss_pred CCCCc-ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCC
Q 001386 652 PESNS-VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 730 (1088)
Q Consensus 652 ~~~~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 730 (1088)
.+++. +..+..
T Consensus 321 ~~~~~~~~~~~~-------------------------------------------------------------------- 332 (420)
T 3vl1_A 321 RSPECPVGEFLI-------------------------------------------------------------------- 332 (420)
T ss_dssp TCTTSCSEEEEE--------------------------------------------------------------------
T ss_pred CCCcCchhhhhc--------------------------------------------------------------------
Confidence 87632 221111
Q ss_pred ccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
.+...+.++.+ ++++.+++++.||.+++|++....... .+....... . ...+...|.+++|+|++
T Consensus 333 -~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~------~~~~~~~~~-~------~~~~~~~v~~~~~s~~~ 397 (420)
T 3vl1_A 333 -NEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESER------PAIEFETPT-F------LVSNDDAVSQFCYVSDD 397 (420)
T ss_dssp -STTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCS------CEECTTSCE-E------ECCSSCCCCEEEEECCS
T ss_pred -cCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCc------cceeccCcc-E------EccCCcceEEEEEccCC
Confidence 03445666644 578889999999999999987643210 010111111 1 11378899999999999
Q ss_pred C----EEEEEeCCcEEEEEcCC
Q 001386 811 A----YLFSASGGVISLYIVMT 828 (1088)
Q Consensus 811 ~----~l~~~~dg~i~iwd~~~ 828 (1088)
+ +++++++|.+.+|+++.
T Consensus 398 ~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 398 ESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SSSCEEEEEETTTEEEEEESCC
T ss_pred CCcceEEEEcCCceEEEEeccC
Confidence 9 77777799999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=340.99 Aligned_cols=347 Identities=12% Similarity=0.111 Sum_probs=284.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++++.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345579999999999999999999999999887655 34455 4455567899999 89999999999999999999
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
....+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 9988899999999999955 6779999999999999999999998999999999999999999999999986 455
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
|++||+.+++.+..+..+..+...+.++++.+.+... ... .....+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999999877667889999988764322 001 11235788999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
+++++.||.|++||+.+++....+.
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~------------------------------------------------------- 286 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLP------------------------------------------------------- 286 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEcc-------------------------------------------------------
Confidence 9999999999999987543211000
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSN 796 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1088)
..
T Consensus 287 ------------------------------------------------------------------------------~~ 288 (420)
T 3vl1_A 287 ------------------------------------------------------------------------------SK 288 (420)
T ss_dssp ------------------------------------------------------------------------------CT
T ss_pred ------------------------------------------------------------------------------cc
Confidence 01
Q ss_pred CCCCeeEEEEecCCC-EEEEEe-CCcEEEEEcCCcee-EEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001386 797 SQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~-~l~~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~ 872 (1088)
|...|.+++|+|++. ++++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++.+.
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEECCT
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEeccCC
Confidence 566788888888887 788777 78888888887644 566665 56778888665 5789999999999999998873
Q ss_pred ---------eeeeeeccccCCeeEEEECCCCC---EEEEEeCCCcEEEEEcCC
Q 001386 873 ---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 873 ---------~~~~~l~~h~~~V~~l~~s~dg~---~las~s~Dg~i~iwd~~~ 913 (1088)
.....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22334667899999999999999 788888899999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=345.30 Aligned_cols=384 Identities=13% Similarity=0.147 Sum_probs=286.9
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeee-cCCCCCeEEEEECC-CCCEEEEEeC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYS 416 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~h~~~V~~l~~s~-dg~~las~~~ 416 (1088)
...|+|+++ .+++++ .|+ .+++.+.. + .+|.+.|.+++|+| ++++||+|+.
T Consensus 32 ~~~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~ 84 (437)
T 3gre_A 32 YKEFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSD 84 (437)
T ss_dssp CGGGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEET
T ss_pred hhhcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecC
Confidence 346899998 466554 377 44555543 4 78999999999999 9999999999
Q ss_pred CCEEEEEEccC---CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC---CCceeEEeccCCccEEE
Q 001386 417 KHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 417 dg~i~vwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~---~~~~~~~~~~~~~~v~~ 490 (1088)
||+|++||+.+ +...+....+ +|...|.+++|+|+++ ++++++.||.|++||+. +++.+..+.+| .+..
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~ 159 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRK 159 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEE
T ss_pred CceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEE
Confidence 99999999987 5533333333 5999999999999999 89999999999999994 77777776655 5666
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE--EccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
+.+.+.. +...+.++. +++++.++++++. ++.|++||+++++.+
T Consensus 160 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 160 INLKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERL 205 (437)
T ss_dssp EEGGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEE
T ss_pred EEccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeee
Confidence 6654321 122334444 6789999999875 556999999999999
Q ss_pred EEEec--cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe----cCCCEEEEEeC
Q 001386 569 RTYQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIAN 642 (1088)
Q Consensus 569 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~ 642 (1088)
..+.+ |. ..|.+++|+|+++++++++.||.|++||+++++++..+.... ...|.+++|+ |++.+|++++.
T Consensus 206 ~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 206 QIIENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEEECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEEST
T ss_pred EEEccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcC
Confidence 99988 55 899999999999999999999999999999999998886322 2368899665 46889999999
Q ss_pred CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCc
Q 001386 643 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 722 (1088)
Q Consensus 643 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 722 (1088)
||.|++||+.+++.+..+.++...+..+.++|.
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 314 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI----------------------------------------------- 314 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB-----------------------------------------------
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceeccc-----------------------------------------------
Confidence 999999999988877777766655554444432
Q ss_pred ceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCee
Q 001386 723 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 802 (1088)
Q Consensus 723 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1088)
++.+ .+. .+.+..|...|.
T Consensus 315 -----------------------~~~l----~~~----------------------------------~~~~~~~~~~v~ 333 (437)
T 3gre_A 315 -----------------------EKGL----EEL----------------------------------NFCGIRSLNALS 333 (437)
T ss_dssp -----------------------CSSG----GGC----------------------------------CCCCCCSGGGGC
T ss_pred -----------------------cccc----ccc----------------------------------eecccccCCceE
Confidence 1111 000 000112777899
Q ss_pred EEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCC---CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 803 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
+++|+ ++++|++++ |+.|++||+.+++....+.+|. .......+++ +..+++.. |+...+.....+
T Consensus 334 ~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~ 403 (437)
T 3gre_A 334 TISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDS 403 (437)
T ss_dssp CEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC----------
T ss_pred EEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcc
Confidence 99999 778899887 9999999999999999888764 3456667776 55555444 334445555667
Q ss_pred ccccCCeeEEEECCC--CCEEEEEeCCCcEEEEE
Q 001386 879 EGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 879 ~~h~~~V~~l~~s~d--g~~las~s~Dg~i~iwd 910 (1088)
..|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 789999999999998 78999999999999995
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=330.68 Aligned_cols=292 Identities=17% Similarity=0.217 Sum_probs=247.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCC------------------CCEEEEEecCCCCc
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 455 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~ 455 (1088)
+|...|.+++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+||++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987654 343332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEE
Q 001386 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999954 67899999999999999999887766655 44578999
Q ss_pred EEcc-CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 536 ~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+|+| +++++++++. ++.|++||..++..+..+... ..|...|.+++|+|+++++++++.|+.|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999 8999999986 455999999999888777311 123389999999999999999999999999999763
Q ss_pred ------------eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcc
Q 001386 611 ------------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1088)
Q Consensus 611 ------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 678 (1088)
.+...+..| ...|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 234455544 346899999999999999999999999999999999999999999999999864322
Q ss_pred eeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
.|++..+++++.|++|++|++.
T Consensus 367 ----------------~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 367 ----------------GPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp ----------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred ----------------CCCCCEEEEECCCCcEEECccc
Confidence 4788999999999999999965
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=348.75 Aligned_cols=337 Identities=15% Similarity=0.238 Sum_probs=267.0
Q ss_pred ccEEEEEEeCCCC-EEEEE----------eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 579 ~~v~~~~~~~~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3578899999987 88888 889999999999876332222222344699999999999999999999999
Q ss_pred EEeCCCCC----cccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcc
Q 001386 648 ILETPESN----SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 723 (1088)
Q Consensus 648 iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 723 (1088)
+|++.+.. ....+
T Consensus 93 vw~~~~~~~~~~~~~~~--------------------------------------------------------------- 109 (416)
T 2pm9_A 93 LYSTNEANNAINSMARF--------------------------------------------------------------- 109 (416)
T ss_dssp EECCSSTTSCCCEEEEC---------------------------------------------------------------
T ss_pred Eeecccccccccchhhc---------------------------------------------------------------
Confidence 99988521 11111
Q ss_pred eeeecCCccccccEEEEEEecC-CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCee
Q 001386 724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 802 (1088)
Q Consensus 724 ~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1088)
..|...|.+++|+|+ +.++++++.||.|++|++........ .+ ..... .....|...|.
T Consensus 110 -------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~------~~~~~-~~~~~~~~~v~ 169 (416)
T 2pm9_A 110 -------SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS------NY------TPLTP-GQSMSSVDEVI 169 (416)
T ss_dssp -------CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT------TC------CCBCC-CCSCCSSCCCC
T ss_pred -------cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc------cc------ccccc-ccccCCCCCee
Confidence 126677888899998 88889999999999998865541100 00 00000 01124788999
Q ss_pred EEEEecC-CCEEEEEe-CCcEEEEEcCCceeEEEecCC------CCCeEEEEEcCCCCcEEEEEeCCC---eEEEEEcCC
Q 001386 803 CFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIYNARS 871 (1088)
Q Consensus 803 ~~~~s~d-g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~~dg---~i~lwd~~~ 871 (1088)
+++|+|+ +.++++++ ++.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++||+.+
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 78899887 899999999999999998876 788999999994457999999999 999999998
Q ss_pred c-eeeeeec-cccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC-CEE
Q 001386 872 S-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-TRF 947 (1088)
Q Consensus 872 ~-~~~~~l~-~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg-~~l 947 (1088)
+ +.+..+. +|...|.+++|+| ++++|++++.||.|++||+.+++ .+....+|.. .|.+++|+|++ .+|
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~---~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-----QLSQFPARGN---WCFKTKFAPEAPDLF 321 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-----EEEEEECSSS---CCCCEEECTTCTTEE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-----cceeecCCCC---ceEEEEECCCCCCEE
Confidence 6 6778888 8999999999999 99999999999999999999865 2333334443 68999999999 788
Q ss_pred EE-EeCCeEEEEEcCcceeeeeee----------------------------------cCCCcCEEEEEEeeCCCEEEEE
Q 001386 948 LL-VHETHLAIYEAEELTCLKQWF----------------------------------PISSVPISQATFSCDCRMVFTS 992 (1088)
Q Consensus 948 ~~-~~d~~i~vwd~~~~~~~~~~~----------------------------------~~h~~~v~~l~fs~dg~~l~s~ 992 (1088)
++ +.|+.|++||+.++....... ..|...+.+++|||||++|+++
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~ 401 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQIT 401 (416)
T ss_dssp EECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBC
T ss_pred EEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEe
Confidence 88 578999999998876433210 1156778899999999999999
Q ss_pred eCCCcEEEEEcCCC
Q 001386 993 FVDGTLSIHEASNL 1006 (1088)
Q Consensus 993 s~dg~v~vwd~~~~ 1006 (1088)
+.||+|+||++.+.
T Consensus 402 ~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 402 PDGKGVSITNPKIS 415 (416)
T ss_dssp TTSSCBCCBCCCCC
T ss_pred CCCCeEEEEEeccC
Confidence 99999999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=317.43 Aligned_cols=321 Identities=12% Similarity=0.143 Sum_probs=262.1
Q ss_pred cCCCCCCCchhhhcccccCCcccCCCch-hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeece
Q 001386 297 IPDYSPKSSLKKEMFQSFGETSFSDFPK-TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1088)
Q Consensus 297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~-~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~ 375 (1088)
+..|+|++..+......... .....+. .......+|.+.|++++|+|+|+ ++++++ ||.|++||+.+++....
T Consensus 14 ~~~~s~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~--- 87 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDAL-IGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--- 87 (337)
T ss_dssp EEEECSSSCEEECCCCTTSS-SSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC---
T ss_pred EEEECCCCCEEEeecCCCcE-eccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceee---
Confidence 35677777776543322211 1122221 22233348999999999999999 688888 99999999998764422
Q ss_pred eeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc
Q 001386 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 376 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 455 (1088)
+......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+..|...|.+++|+|+++
T Consensus 88 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~- 154 (337)
T 1gxr_A 88 -----------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK- 154 (337)
T ss_dssp -----------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS-
T ss_pred -----------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCC-
Confidence 111113379999999999999999999999999999999987632 2336778999999999999999
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEE
Q 001386 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
++++++.|+.|++||+.+++.+..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+. +...+.++
T Consensus 155 -~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~ 230 (337)
T 1gxr_A 155 -VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSL 230 (337)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEE
Confidence 899999999999999999999999999999999999954 67899999999999999999887766654 56689999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
+|+|+++++++++. ++.|++||..+++.. .+..|. ..+.+++|+|+++++++++.||.|++||+.+++.+..
T Consensus 231 ~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 231 GYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 99999999999875 445999999988754 455565 8999999999999999999999999999999988866
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
... ...+.+++|+|++++|++++.||.|++|++
T Consensus 303 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 543 235899999999999999999999999986
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=357.36 Aligned_cols=298 Identities=18% Similarity=0.248 Sum_probs=252.3
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
...|.+|++.|++++|+|++..+|++|+.|++|+|||+.++...... ....+.+|...|.+++|+|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~ 440 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSS 440 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECT
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECC
Confidence 45688999999999999987558999999999999999876432110 1123788999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe---cc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EG 483 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~---~~ 483 (1088)
+|++|++|+.|++|+|||+.+++..+ .+.+|...|.+++|+|+++ .+++++.|++|++||.......... .+
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 515 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEG 515 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTS
T ss_pred CCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCC
Confidence 99999999999999999999986554 6789999999999999999 7999999999999997654333222 46
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|...|.+++|+++.....+++++.||.|++||++.......+..|...|.+++|+|+|++|++++. ++.|++||+.
T Consensus 516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~ 591 (694)
T 3dm0_A 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLA 591 (694)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETT
T ss_pred CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECC
Confidence 889999999987655578999999999999999999988899999999999999999999999986 5569999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC-----------------CCCCc
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPENP 626 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~ 626 (1088)
+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.
T Consensus 592 ~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 592 EGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp TTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred CCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence 99888776543 4799999999988777665 56699999999998887754311 11256
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 627 RICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+++|+|+|++|++|+.||.|++|++.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 89999999999999999999999985
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=329.51 Aligned_cols=329 Identities=16% Similarity=0.225 Sum_probs=281.3
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
..+.|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3556787 699999999999999999987765 77899999999997
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
+.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+.+++++..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999987554 688999999999996 45 69999999999999999999999999999
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.+++| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5678999999999999999999988899999999999999 8899999976 455999999999
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC-CCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
+.+..+.+|. ..+.++.++ ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998887 788877764 6799999999999999999999999987632 34468888885 68999999999
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.|++||+.+++.+..+..
T Consensus 383 ~v~iwd~~~~~~~~~~~~-------------------------------------------------------------- 400 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVT-------------------------------------------------------------- 400 (445)
T ss_dssp EEEEEETTTCCEEEEEEE--------------------------------------------------------------
T ss_pred eEEEEECCCCceeeeeec--------------------------------------------------------------
Confidence 999999998765443311
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccc----eEEEEccCC
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPRN 766 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~----v~iw~~~~~ 766 (1088)
.....+...|.+++|+|++..+++++.||. +.+||+...
T Consensus 401 ---~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 401 ---LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ---CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ---cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 001126678999999999999999999997 999997643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=316.83 Aligned_cols=298 Identities=15% Similarity=0.227 Sum_probs=239.4
Q ss_pred CCCCceeEEEeccccccccEEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCe-----eeEEEeCCCCCCCCceEEEecCCC
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFNKNGT 635 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1088)
.++.++..++++|. +.|++++|+|+ +++|++|+.|++|++||+.+++ +...+..| ...|.+++|+|+++
T Consensus 25 ~~~~~l~~tL~GH~---~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h--~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 25 TEQMTLRGTLKGHN---GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH--SHFVSDVVISSDGQ 99 (340)
T ss_dssp -CEEEEEEEECCCS---SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC--SSCEEEEEECTTSS
T ss_pred CCceEEEEEECCcc---CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC--CCCEEEEEECCCCC
Confidence 34455667889988 99999999998 5899999999999999987654 34555555 44799999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccc
Q 001386 636 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 715 (1088)
+|++++.|+.|++|+...........
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~------------------------------------------------------ 125 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFV------------------------------------------------------ 125 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE------------------------------------------------------
T ss_pred EEEEEcccccceEEeecccceeeeec------------------------------------------------------
Confidence 99999999999999877432111000
Q ss_pred cccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC
Q 001386 716 LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS 795 (1088)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1088)
T Consensus 126 -------------------------------------------------------------------------------- 125 (340)
T 4aow_A 126 -------------------------------------------------------------------------------- 125 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCcee-EEEecCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEEcCCc
Q 001386 796 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHD-NNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d-~~~lasg~~dg~i~lwd~~~~ 872 (1088)
.+...+....+++++.++++++ |+.+++||...... .....+|...+.+++|+++. ..++++++.|+.|++||+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~ 205 (340)
T 4aow_A 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence 0233445566667777777776 67788887765443 33456788999999999832 357889999999999999999
Q ss_pred eeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC
Q 001386 873 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952 (1088)
Q Consensus 873 ~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d 952 (1088)
+.+..+.+|.+.|++++|+|++++|++++.||+|++||+.+.+. +.....+. .+.+++|+|++.+++++.|
T Consensus 206 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~----~v~~~~~~~~~~~~~~~~d 276 (340)
T 4aow_A 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----LYTLDGGD----IINALCFSPNRYWLCAATG 276 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----EEEEECSS----CEEEEEECSSSSEEEEEET
T ss_pred ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----eeeecCCc----eEEeeecCCCCceeeccCC
Confidence 99999999999999999999999999999999999999998653 23333332 5899999999999998999
Q ss_pred CeEEEEEcCcceeeeeee--------cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 953 THLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~--------~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
+.|++||+.++..+..+. .+|...|++++|+|||++|++|+.||+|+|||+.+|.
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999887766542 3688999999999999999999999999999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=328.90 Aligned_cols=290 Identities=18% Similarity=0.239 Sum_probs=252.8
Q ss_pred hhheeecccCCCCc-eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V-~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.....+|.+|.+.| .++.| ++. ++++|+.||+|++||+.+++.+.. +.+|.+.|.++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l 168 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL 168 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence 34567889999886 56565 556 799999999999999999987765 77899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCce---
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR--- 477 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~s~d~~i~vwd~~~~~~--- 477 (1088)
+|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ +++ ++++++.|++|++||+.++..
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence 999988 99999999999999999987554 6889999999999994 566 899999999999999988763
Q ss_pred --------------------eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEE
Q 001386 478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1088)
Q Consensus 478 --------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 537 (1088)
+..+.+|...|.++.. ++.++++++.||.|++||+++.+....+..+...|.+++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 4567889999988843 5579999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 538 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
+|+++++++++. ++.|++||+.+++.+..+.+|. ..|.++.|+ +.++++++.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999986 4559999999999999999888 899999997 5899999999999999999988776664
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
.. ..+..++|+++++++++++ ||.|++||+.+++.+.
T Consensus 390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 32 2467899999999999998 8999999999876554
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.57 Aligned_cols=298 Identities=15% Similarity=0.138 Sum_probs=249.0
Q ss_pred hhheeecccCCCCceeeeecCCC-CeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
....+++.+|.+.|++++|+|+| + +|++|+.||.|+|||+.+++...... ..+|...|.++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~ 124 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM 124 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence 35567889999999999999999 6 79999999999999999887664311 34799999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 403 ~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ ++++++.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 33443333345568899999999999 8999999999999998 68889999
Q ss_pred ccCCccEEEEeeeeeCCce-EEEEEecCCeEEEEECCC----CCceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCCce
Q 001386 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES 555 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~ 555 (1088)
.+|...|.+++|++ ++. ++++++.||.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 99999999999965 556 899999999999999987 3344444 6888999999999 9999999975 55
Q ss_pred eEEEEeCCCCceeEEEeccccc--------------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
.|++||+.+++....+.+|... ...+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 6999999999887777755311 123445666777766 777999999999999999999987654
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
...+..++|+|++++|++++ |+.|++|++.+
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677789999999999997 89999999874
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=329.10 Aligned_cols=305 Identities=12% Similarity=0.110 Sum_probs=257.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+.++|.+|.+.|++++|+| + +|++|+.||+|+|||+.+++...... ....+.+|...|.+++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~ 70 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDV 70 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEE
Confidence 45678899999999999999 4 78999999999999999987211100 00116689999999999
Q ss_pred CCC----C---CEEEEEeCCCEEEEEEccCCCccc--ceeEeccC-----CCCEEEEEec----CCCCcEE-EEEEeCCC
Q 001386 405 SPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VITCGDDK 465 (1088)
Q Consensus 405 s~d----g---~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h-----~~~v~~~~~s----~d~~~l~-l~s~s~d~ 465 (1088)
+|+ | ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ . +++++.|+
T Consensus 71 ~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg 148 (397)
T 1sq9_A 71 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKG 148 (397)
T ss_dssp EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTS
T ss_pred ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCC
Confidence 999 9 999999999999999999887510 02367778 5899999999 9999 7 99999999
Q ss_pred cEEEEeCCC------CceeE-----Eec-------cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC
Q 001386 466 TIKVWDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1088)
Q Consensus 466 ~i~vwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1088)
.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++.+....+..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 999999998 77776 774 4889999999954 66 999999999999999999888888888
Q ss_pred ---C---CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec-------------cccccccEEEEEEeC
Q 001386 528 ---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVSVVHFDT 588 (1088)
Q Consensus 528 ---~---~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~ 588 (1088)
| ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+ |. ..|.+++|+|
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~ 301 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFND 301 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECS
T ss_pred cccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEEEEEECC
Confidence 7 88999999999999999998630 016799999999999999988 66 8999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeEEEe------CC-------------CCCCCCceEEEecCC----------CEEEE
Q 001386 589 AKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG----------TLLAV 639 (1088)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~----------~~l~~ 639 (1088)
++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++
T Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 99999999999999999999999999998 44 003469999999998 79999
Q ss_pred EeCCCcEEEEeCCCC
Q 001386 640 IANENRIKILETPES 654 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~ 654 (1088)
++.||.|++|++.++
T Consensus 382 ~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 382 VCLDRSIRWFREAGG 396 (397)
T ss_dssp EETTTEEEEEEEEC-
T ss_pred ecCCCcEEEEEcCCC
Confidence 999999999998765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=346.00 Aligned_cols=342 Identities=10% Similarity=0.057 Sum_probs=251.3
Q ss_pred hheeecccCCCCceeeeecCCC---------CeEEEE-------------------EcccCcEEEEecCCCcceeeecee
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFK 376 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg---------~~lla~-------------------g~~dg~i~iwd~~~~~~~~~~~~~ 376 (1088)
.+..++. +.+.|++|+|+|++ + +||+ ++.|++|+|||+.+++.....
T Consensus 125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~--- 199 (524)
T 2j04_B 125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK--- 199 (524)
T ss_dssp SCEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE---
T ss_pred cceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE---
Confidence 3333444 46689999999986 4 5665 446789999999887643210
Q ss_pred eeeeccccccceeeeecCCCCCeEEEEECCC------CCEEEEEeCCCEEEEEEccCCCcc--------cceeEeccCCC
Q 001386 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVG 442 (1088)
Q Consensus 377 ~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d------g~~las~~~dg~i~vwd~~~~~~~--------~~~~~~~~h~~ 442 (1088)
...+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++.. .....+.+|..
T Consensus 200 ------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~ 267 (524)
T 2j04_B 200 ------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS 267 (524)
T ss_dssp ------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred ------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence 0114568899999999997 579999999999999999877532 12346789999
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeccCCccEEEEeeeeeCCc-eEEEEEecCCeEEEEECCCCC
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLG 520 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 520 (1088)
.|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++++..++++ .+|++++.||+|++||+++.+
T Consensus 268 ~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 268 LITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp CEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred CEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 99999999864 59999999999999999874 45678999999999954435666 799999999999999998876
Q ss_pred ceEEecCCC--CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC
Q 001386 521 ARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 521 ~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
....+..+. ..+.+++|+|+++.+++++. +..|++||++++.++..+.+|. ..|.+++|+|++++|++|+.
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEET
T ss_pred cccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEEC
Confidence 655554443 35789999999999988864 5569999999999888888888 89999999999999999999
Q ss_pred CCcEEEEEcCCCeeeEEEeCC---CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC-CCCcccccccccCcceeeeecC
Q 001386 599 DHVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNP 674 (1088)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~p 674 (1088)
||+|++||+..+ .+...... .....+..++|+|++..+. ... .+.+|... ++..+..+.+|...|.+++|+|
T Consensus 418 Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 418 DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECC
T ss_pred CCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCC
Confidence 999999998654 22221110 0111356889999998553 222 33344333 4567778889999999999996
Q ss_pred CCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 675 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
.+ +.+..+++|+.+|.|+||++.
T Consensus 494 ~~-------------------~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 494 TS-------------------AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ST-------------------TTTTEEEEECTTSEEEEEECS
T ss_pred CC-------------------CccHHHHhhccCceEEEEEcc
Confidence 52 235689999999999999976
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=318.78 Aligned_cols=291 Identities=12% Similarity=0.111 Sum_probs=258.6
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
...|.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDC 84 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECT
T ss_pred cEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcC
Confidence 356889999999999999998 789999999999999999987765 778999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCCc-----
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS----- 476 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i~vwd~~~~~----- 476 (1088)
++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999999999999999999987665 344 888999999999999 78889888 999999988664
Q ss_pred ------eeEEeccCCc--cEEEEeeeeeCCceEEEEEecCCeEEEEECCC-CCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 477 ------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 477 ------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+++ ......+..+...|.+++|+|++++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 3455566666 899999955 677999999999999999998 66777888899999999999999999998
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC--------------cEEEEEcCCCeee
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQLL 613 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~~ 613 (1088)
+. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.+
T Consensus 237 ~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 237 SR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp ET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred cC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 75 55699999999999888873 3 6899999999999999999888 8999999999999
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
..+..+.. .|.+++|+|++++|++++.||.|++|++..+.
T Consensus 309 ~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 309 GRVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hheecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99987644 69999999999999999999999999998654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=323.06 Aligned_cols=319 Identities=18% Similarity=0.276 Sum_probs=270.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ ++++|+.||+|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6789887533 355579999999999999999999987655 688999999999998 45 799999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.+++++..+.+|...|.++.+. +..+++++.||.|++||+.+.+....+..+...+.+++| +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999883 358999999999999999999999999999999999998 7889999876
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
++.|++||..+++.+..+.+|. ..+.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~-- 326 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGME-- 326 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEE--
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEE--
Confidence 4559999999999999999887 88999998 789999999999999999999999998876643 355554
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
++++++++++.||.|++||+.+++.+..+..+
T Consensus 327 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred EeCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 46779999999999999998765332211100
Q ss_pred eccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec
Q 001386 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND 791 (1088)
Q Consensus 712 vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1088)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCe--
Q 001386 792 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDST-- 863 (1088)
Q Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~-- 863 (1088)
..|...|.+++++ +.++++++ ||.|++||+.+++.+..+ ..|...|.+++|+| ++.++++|+.||+
T Consensus 359 ---~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~ 432 (445)
T 2ovr_B 359 ---NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEE 432 (445)
T ss_dssp ---TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSC
T ss_pred ---CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCc
Confidence 0155667777774 56888887 889999999999888887 46788999999999 8999999999997
Q ss_pred --EEEEEcCC
Q 001386 864 --ILIYNARS 871 (1088)
Q Consensus 864 --i~lwd~~~ 871 (1088)
|.|||+..
T Consensus 433 ~~l~v~df~~ 442 (445)
T 2ovr_B 433 TKLLVLDFDV 442 (445)
T ss_dssp CEEEEEECCC
T ss_pred cEEEEEECCC
Confidence 99999874
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=310.27 Aligned_cols=293 Identities=20% Similarity=0.267 Sum_probs=255.8
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
....++|.+|.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 3567889999999999999 9998 689999999999999988876654 556899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ .+++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999877655555578899999999999 456 799999999999999 7788889999
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC-CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 557999999999999999 3445555555 788999999999999 777764 566999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.+++.+..+.+|. ..+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeC
Confidence 9999999999888 899999999999 699999999999999999999999987644 689999999998 667899
Q ss_pred CCcEEEEeCCCCCccc
Q 001386 643 ENRIKILETPESNSVD 658 (1088)
Q Consensus 643 dg~i~iwd~~~~~~~~ 658 (1088)
||.|++|++.+++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999775544
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=339.68 Aligned_cols=350 Identities=10% Similarity=0.047 Sum_probs=245.9
Q ss_pred CCCCeEEEEECCCC---------CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 395 h~~~V~~l~~s~dg---------~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
+.+.|.+++|+|++ ++||+|+.++. + -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 57899999999987 79999986642 0 01368888 789999999
Q ss_pred cEEEEeCCCCcee----EEeccCCccEEEEeeeee----CCceEEEEEecCCeEEEEECCCCCc-----------eEEec
Q 001386 466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 526 (1088)
Q Consensus 466 ~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 526 (1088)
+|+|||+.++++. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887753 456778899999999876 3467999999999999999986542 23566
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccccccEEEE--EEeCCC-CEEEEEeCCCcE
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 602 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i 602 (1088)
.|...|.+++|++++ .|++++. ++.|++||+.++. ....+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888875 5679999999764 456678887 899999 578887 899999999999
Q ss_pred EEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceecc
Q 001386 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 682 (1088)
++||+++++.+..+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999988777666543322478999999999999999999999999987654333322
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEE
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~ 762 (1088)
|...|.+++|+|+|+.|++++.||.|++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 566778888888888888888888888887
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcC-CceeEEEecCCCCC
Q 001386 763 WPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPSPT 841 (1088)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~~~~~ 841 (1088)
+..... ....+. ....+...+.+++|+|+++.+.. .+.+.+|+.. ++..+..+.+|...
T Consensus 426 ~~~~~~-----------~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 426 AARRLL-----------HGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp SCSSTT-----------TCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------CCCS
T ss_pred chHhhc-----------cccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCCCce
Confidence 543211 100000 00002234678999999986533 2233344332 46778889999999
Q ss_pred eEEEEEcCCCC---cEEEEEeCCCeEEEEEcCC
Q 001386 842 ATSLAFNPHDN---NVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 842 i~~l~~sp~d~---~~lasg~~dg~i~lwd~~~ 871 (1088)
|.+++|+| ++ .++|+|+.||.|+||++.-
T Consensus 486 V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 486 ITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 99999999 64 5999999999999999873
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=321.48 Aligned_cols=300 Identities=12% Similarity=0.205 Sum_probs=248.8
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcc---cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
|....+.+.+|.+.|.+++|+|++..++++|+. |+.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 344556678999999999999999878889987 999999999998765431 22589999
Q ss_pred EEEEECCC---CCEEEEEeCCCEEEEEEccCCC-cccceeEeccCCCCEEEEE------ecCCCCcEEEEEEeCCCcEEE
Q 001386 400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 400 ~~l~~s~d---g~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~l~l~s~s~d~~i~v 469 (1088)
.+++|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ .+++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999998 7999999999999999999887 333 6889999999995 578898 8999999999999
Q ss_pred EeCCCCc-eeEEeccCCc----cEEEEeeee--eCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc---
Q 001386 470 WDAVTGS-RTYSFEGHGA----PVYSLCPHA--KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 539 (1088)
Q Consensus 470 wd~~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--- 539 (1088)
||+.+++ .+..+..|.+ .+.++++.+ ++++.++++++.||.|++||+++.+... ...+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCC
Confidence 9999987 7788876655 788888422 4577899999999999999999877644 355677999999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe-----ccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcCCC---
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 610 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 610 (1088)
++.++++++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999875 5569999998877655554 666 8999999999998 8999999999999999754
Q ss_pred ----------------eeeEEEeCCCCCCCCceEEEecCCCEEE-EEeCCCcEEEEeCCCCC
Q 001386 611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 655 (1088)
Q Consensus 611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 655 (1088)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345566655 34699999999999998 79999999999998653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=322.56 Aligned_cols=342 Identities=15% Similarity=0.196 Sum_probs=270.3
Q ss_pred EEecCCCCce-EEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 523 VDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 523 ~~~~~~~~~v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
..+..|...+ .++.+ +++++++++. ++.|++||..+++.+..+.+|. ..|.+++|++++ .+++|+.||+
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~----dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTSC
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcC----CCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCCC
Confidence 3555666654 44444 6789999886 4559999999999999999888 999999999987 9999999999
Q ss_pred EEEEEcCCCeeeEEEeCCCCCCCCceEEEe--cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcce
Q 001386 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 679 (1088)
|++||+.+++.+..+..|.. .|.+++|+ +++.++++++.||.|++||+.++...........
T Consensus 185 i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-------------- 248 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-------------- 248 (464)
T ss_dssp EEEEETTTTEEEEEECCCSS--CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC--------------
T ss_pred EEEEECCCCcEEEEECCCCC--ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC--------------
Confidence 99999999999999886644 68999998 5789999999999999999987643322110000
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceE
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~ 759 (1088)
...+.+.+++...+.
T Consensus 249 ---------------------------------------------------------~~~~~~~~~~~~~~~-------- 263 (464)
T 3v7d_B 249 ---------------------------------------------------------YPLVFHTPEENPYFV-------- 263 (464)
T ss_dssp ---------------------------------------------------------SSEEESCGGGCTTEE--------
T ss_pred ---------------------------------------------------------cceEeeccCCCeEEE--------
Confidence 000011111110000
Q ss_pred EEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC
Q 001386 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 760 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
..+ .+|...+.++ ++++.++++++ |+.|++||+.+++.+..+.+|
T Consensus 264 ------------------------------~~~--~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 309 (464)
T 3v7d_B 264 ------------------------------GVL--RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309 (464)
T ss_dssp ------------------------------EEE--CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ------------------------------EEc--cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 001 1266666665 67899999998 899999999999999999999
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 918 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~ 918 (1088)
...|.+++|+| +++++++|+.||.|++||+.+++++..+.+|...|.+++|+ +++|++++.||+|++||+.++....
T Consensus 310 ~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 310 TDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp SSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence 99999999999 89999999999999999999999999999999999999997 5799999999999999999865322
Q ss_pred eeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcE
Q 001386 919 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 998 (1088)
Q Consensus 919 ~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v 998 (1088)
. .... ..+..++|++++++++++.|+.|++||+.+++.+.....+|...|.+++|+ ++.++++++.||.+
T Consensus 387 ~----~~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 387 S----YHHT-----NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQS 456 (464)
T ss_dssp E----EECT-----TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred e----ecCC-----CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence 1 1111 246789999999999998899999999999999988778899999999997 44455566667766
Q ss_pred EEEE
Q 001386 999 SIHE 1002 (1088)
Q Consensus 999 ~vwd 1002 (1088)
.+|-
T Consensus 457 ~i~~ 460 (464)
T 3v7d_B 457 FLEI 460 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=328.50 Aligned_cols=274 Identities=12% Similarity=0.181 Sum_probs=212.8
Q ss_pred Cchhheeec-ccCCCCceeeeecC-CCCeEEEEEcccCcEEEEecCC---CcceeeeceeeeeeccccccceeeeecCCC
Q 001386 322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1088)
Q Consensus 322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~lla~g~~dg~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 396 (1088)
.....+.++ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence 345677778 89999999999999 998 799999999999999987 432110 0012499
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEcc---CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~---~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
..|.+++|+|++++|++|+.||.|++||+. +++... .+.+| .+..+.|+|++
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~-------------------- 166 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG-------------------- 166 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence 999999999999999999999999999995 554333 34444 67777777643
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC--CCCceEEEEEccCCCEEEEEeeCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+...+.++.+...+++.++++++.||.|++||+++.+....+.. |...|.+++|+|++++|++++.
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 234 (437)
T 3gre_A 167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-- 234 (437)
T ss_dssp ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence 23344455554567888999999999999999999998888877 6789999999999999999986
Q ss_pred CCceeEEEEeCCCCceeEEEe-ccccccccEEEEEEe----CCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC-----
Q 001386 552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----- 621 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----- 621 (1088)
++.|++||+++++.+..+. .+. ..|.+++|+ +++.++++++.||.|++||+.+++.+..+..+..
T Consensus 235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 4569999999999988886 555 689999665 4677999999999999999999999988886532
Q ss_pred -------------------CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 622 -------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
...|.+++|+ ++++|++++.|+.|++||+.+++.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 1225555665 455666666666666666655433
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=322.77 Aligned_cols=295 Identities=16% Similarity=0.213 Sum_probs=247.4
Q ss_pred eecccCCCCceeeeecCC---CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spd---g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..+.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence 445699999999999984 44456666667899999999887664321 1113347899999999
Q ss_pred CCC----CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 405 s~d----g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
+|+ |++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| +++ ++++++.||.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999987655 6779999999999999 777 89999999999999999999998
Q ss_pred Ee---ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec----------------------------CC
Q 001386 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------------------------AP 528 (1088)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~ 528 (1088)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+. .+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 78999999999955 67899999999999999998765433222 37
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce--------------eEEEeccccccccEEEEEEeCC--CCE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 592 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~ 592 (1088)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+.+|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 7889999998 778888865 56799999988754 66777776 78999999999 999
Q ss_pred EEEEeCCCcEEEEEcCCCee----eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 593 ILAAGDDHVIKIWDMNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+++++.||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999998764 3466666445679999999999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=329.38 Aligned_cols=304 Identities=17% Similarity=0.191 Sum_probs=239.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
...+...+|...|+||+|||.+..+||+|+.||+|+|||+.+++...... +.+|.+.|++++|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f 172 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKF 172 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEE
Confidence 34456678999999999999654489999999999999999886543211 5689999999999
Q ss_pred CC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 405 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 405 s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+| |+.+|++|+.||+|++||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+
T Consensus 173 ~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~ 248 (435)
T 4e54_B 173 NPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRM 248 (435)
T ss_dssp CSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBC
T ss_pred eCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEec
Confidence 98 789999999999999999987532 22222233445688999999999 89999999999999975 567788899
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE---EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
|...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++|
T Consensus 249 h~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iw 323 (435)
T 4e54_B 249 HKKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVY 323 (435)
T ss_dssp CSSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEE
T ss_pred ccceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEE
Confidence 99999999997643 2488999999999999998766443 33567789999999999999999986 4559999
Q ss_pred eCCCCceeEEEecccccc---ccEEEEEEeCCCCEEEEEe------------CCCcEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 561 NESEGAIKRTYQGLQLQH---NSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
|+.++.....+..|.... ..+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|
T Consensus 324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v 402 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGI 402 (435)
T ss_dssp ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCC
T ss_pred ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcE
Confidence 999998888877664111 1233456777777776654 34679999999999988875432 2357
Q ss_pred ceE-EEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 626 PRI-CFNKNGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 626 ~~v-~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
.++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 403 SSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 776 6999999999876 78999999998754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=313.75 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=246.8
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCc--ceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+..|.++|++++|+|||+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456888999999999999 78999999999999999886 4433 6679999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---e-EEecc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEG 483 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~---~-~~~~~ 483 (1088)
+++|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ ++++++.|+.|++||+.++.. . ....+
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999998876433 224568999999999999999 899999999999999998873 3 33367
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECC------------------CCCceEEecCCCCceEEEEEccCCCEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
|...|.+++|++ ++.++++++.||.|++||++ .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999955 67899999999999999954 5566777778888999999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC--Ceee----------
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 613 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 613 (1088)
+++. ++.|++||+.+++.+..+..|. ..+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9975 5569999999999999999887 899999999999887777 899999999987 4310
Q ss_pred ----------------------------EEEeCCCCCCCCceEEEe-cCC---CEEEEEeCCCcEEEEeCCCC
Q 001386 614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 654 (1088)
Q Consensus 614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iwd~~~~ 654 (1088)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1344578999866 566 99999999999999998764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=315.22 Aligned_cols=203 Identities=13% Similarity=0.127 Sum_probs=172.7
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001386 797 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 873 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~ 873 (1088)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |++++++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556789999999999988664 6899999999999999886 778899999999 89999999855 56777777776
Q ss_pred eee--eeccccCCeeEEEECCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 874 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 874 ~~~--~l~~h~~~V~~l~~s~dg~~las~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++......... .....++.. .|++++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCCC---CeEeEEECCCCCce
Confidence 543 4467999999999999999999999887 6889998876533222 223334443 79999999999999
Q ss_pred EE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 948 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 948 ~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++||+||.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 578999999999999999988899999999999999999999999999999999755
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=320.15 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=243.1
Q ss_pred eEEEEeCCCCceeEEEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeEEEeC-----------CCCCC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLP 623 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 623 (1088)
.+++|+...++....+.+|. ..|.+++|+| +++++++++.||.|++||+.+++....+.. ..+..
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 36778888888888888887 9999999999 999999999999999999998766554431 12345
Q ss_pred CCceEEEec-CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccc
Q 001386 624 ENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1088)
Q Consensus 624 ~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 702 (1088)
.|.+++|+| ++.++++++.||.|++||+.+++....+.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------------------- 139 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----------------------------------------- 139 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------------------------------------
Confidence 689999999 77899999999999999987543221110
Q ss_pred ccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCC
Q 001386 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPR 782 (1088)
Q Consensus 703 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 782 (1088)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceeeccCCCCCCCCeeEEEEec---CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEE
Q 001386 783 HGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAI 857 (1088)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~las 857 (1088)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| +++ ++++
T Consensus 140 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~ 204 (408)
T 4a11_B 140 --------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILAT 204 (408)
T ss_dssp --------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEE
T ss_pred --------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEE
Confidence 222344455554 445788776 88999999999999999999999999999999 566 6999
Q ss_pred EeCCCeEEEEEcCCce-eeeee---------------ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001386 858 GMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 921 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~ 921 (1088)
|+.||.|++||+.++. .+..+ .+|.+.|.+++|+|++++|++++.||.|++||+.+++......
T Consensus 205 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY 284 (408)
T ss_dssp EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC
T ss_pred EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc
Confidence 9999999999998765 33333 5799999999999999999999999999999999865322111
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1001 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vw 1001 (1088)
......... ...........+.+++++.++.|++||+.+++++.. +.+|...|.+++|+||+++|++++.||.|++|
T Consensus 285 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 285 GKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp CCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 111111111 122334445556666668999999999999999887 45899999999999999999999999999999
Q ss_pred EcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1002 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1002 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
|+.+++.+....... ....+.|.+...+...+.|+.+.+|+.+.
T Consensus 362 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 362 VPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EECC-----------------------------------------------------
T ss_pred eCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCcc
Confidence 999998775543111 11223333456677888999999998753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=324.24 Aligned_cols=303 Identities=13% Similarity=0.120 Sum_probs=232.1
Q ss_pred eEEEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEEeCCCc
Q 001386 568 KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENR 645 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~ 645 (1088)
.....+|. ..|++++|+| +++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++.+|++++.||+
T Consensus 112 ~~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 34445555 7899999999 46789999999999999999887766666555566899999998 7899999999999
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
|++||+.++....
T Consensus 189 v~iwd~~~~~~~~------------------------------------------------------------------- 201 (435)
T 4e54_B 189 TRLQDFKGNILRV------------------------------------------------------------------- 201 (435)
T ss_dssp EEEEETTSCEEEE-------------------------------------------------------------------
T ss_pred EEEeeccCCceeE-------------------------------------------------------------------
Confidence 9999986321000
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 805 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1088)
+... ..+...+.+++
T Consensus 202 ------------------------~~~~-----------------------------------------~~~~~~~~~~~ 216 (435)
T 4e54_B 202 ------------------------FASS-----------------------------------------DTINIWFCSLD 216 (435)
T ss_dssp ------------------------EECC-----------------------------------------SSCSCCCCCEE
T ss_pred ------------------------Eecc-----------------------------------------CCCCccEEEEE
Confidence 0000 01334567789
Q ss_pred EecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee---eeccc
Q 001386 806 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS---KLEGH 881 (1088)
Q Consensus 806 ~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~---~l~~h 881 (1088)
|+|++++|++|+ +|.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|+|||+.+++... ...+|
T Consensus 217 ~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h 295 (435)
T 4e54_B 217 VSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295 (435)
T ss_dssp EETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC
T ss_pred ECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec
Confidence 999999999998 8999999986 566778889999999999999555689999999999999998876443 34679
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-----------
Q 001386 882 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----------- 950 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~----------- 950 (1088)
...|++++|+|||++|++++.||+|+|||+.+++............ .....+..+.|+|++..++++
T Consensus 296 ~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 9999999999999999999999999999999876433221111100 000123345666666666553
Q ss_pred --eCCeEEEEEcCcceeeeeeecCCCcCEEEE-EEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 951 --HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 951 --~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.++.|++||..+++++..+..+|...|.++ +|+|||++|++|+ |++|+||++.+|+..
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999999888899999887 6999999999875 889999999998753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=315.07 Aligned_cols=307 Identities=16% Similarity=0.167 Sum_probs=244.3
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCE
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 636 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 636 (1088)
+|+.........+.+|. ..|.+++|+|++ +++++++.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 34455666777888887 899999999999 999999999999999999998888887545556799999999 7899
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|++++.|+.|++||+.+. ....+.
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~------------------------------------------------------- 157 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFA------------------------------------------------------- 157 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEE-------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEe-------------------------------------------------------
Confidence 999999999999998731 100000
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSN 796 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1088)
. ...
T Consensus 158 -----------------------------------~-----------------------------------------~~~ 161 (383)
T 3ei3_B 158 -----------------------------------K-----------------------------------------TDS 161 (383)
T ss_dssp -----------------------------------C-----------------------------------------CCC
T ss_pred -----------------------------------c-----------------------------------------cCC
Confidence 0 001
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEeCCCeEEEEEcCC---
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNARS--- 871 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~i~lwd~~~--- 871 (1088)
+...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.||.|++||+.+
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCc
Confidence 456788899999999999988 889999998 5778888999999999999999 677 999999999999999998
Q ss_pred -ceeeeeeccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--CCCCcc-------CCCCeEEEEE
Q 001386 872 -SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSETHIQF 940 (1088)
Q Consensus 872 -~~~~~~l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~~~~f 940 (1088)
+.++..+ +|.+.|.+++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+..++|
T Consensus 240 ~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 240 KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp TTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred ccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence 6666666 6999999999999 99999999999999999999866432211110 001110 0123445666
Q ss_pred cCCCCEEEEEeCCeEEEEEcCcceeeeeeecC-CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 941 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 941 s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
+|||++ ..+.|+.|++||+.+++++..+... |...+..++|+|||++|++|+ ||.|++||+.+
T Consensus 319 s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 319 YPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 677766 3357899999999999998886533 467788889999999999997 99999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=314.92 Aligned_cols=298 Identities=11% Similarity=0.126 Sum_probs=232.1
Q ss_pred CceeeeecCCCCeEEEEEccc-------CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 336 SPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
+|++++|+|||+ +||+|+.+ +.|+||++..+.......+ .......+.+|...|.+++++ +
T Consensus 16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~--~ 83 (365)
T 4h5i_A 16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS--K 83 (365)
T ss_dssp CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--T
T ss_pred CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--C
Confidence 899999999998 78888643 3599999987654322111 111222377899999888775 5
Q ss_pred CEEEEE-----------eCCCEEEEEEccCCCcccc-ee-----EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 409 SLLGVA-----------YSKHIVQLYAYHGGSDARQ-QL-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 409 ~~las~-----------~~dg~i~vwd~~~~~~~~~-~~-----~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+++| +.|+.+++|++.++..... .. ....+...+.+++|||||+.+.+++++.|++|+|||
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence 566665 3577899999987643211 11 122445668999999999965566777899999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE--EecCCCCceEEEEEccCCCEEEEEee
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
+.+++++..+. |...|.+++| +++|.++++++.+ .+.+|+..++.... ....+...+.+++|+|+++++++++.
T Consensus 164 ~~~~~~~~~~~-~~~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 164 PSDLTEKFEIE-TRGEVKDLHF--STDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp TTTTEEEEEEE-CSSCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEEeC-CCCceEEEEE--ccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999998886 7788999999 4578899998855 56666666666544 33456678999999999999999998
Q ss_pred CCCCceeEEEEeCCCCce----eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE-eCCCCCCC
Q 001386 550 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE 624 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 624 (1088)
++.....+++|+...+.. ...+.+|. ..|.+++|+|+|++|++|+.|++|+|||+.+++++..+ ..|. ..
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~~ 314 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--FA 314 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--SC
T ss_pred CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--CC
Confidence 776667889999877654 33455665 88999999999999999999999999999999999876 4454 46
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
|++++|+|||++||+++.|++|+||+++.+
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=312.22 Aligned_cols=298 Identities=16% Similarity=0.230 Sum_probs=246.5
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
...+|.+.+.+..+++++.. +++++.|+.|+|||+.+++..... ...|...|.+++|+|++
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~ 146 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDG 146 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTS
T ss_pred eCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCC
Confidence 34478777665555544553 566778999999999999876531 22388999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEEeccCCcc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAP 487 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~ 487 (1088)
++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+. .+..+..+.+|...
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 219 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred CEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCC
Confidence 999999999999999999987655 677999999999994 45 79999999999999999 56778889999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
|.+++|++ ++.+|++++.||.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.
T Consensus 220 v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 220 VCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCE
T ss_pred eeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCE
Confidence 99999965 7789999999999999999999888888899999999999998866655432 12367799999999999
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
+..+..+ ..+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.
T Consensus 297 ~~~~~~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 297 VNTVDAG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp EEEEECS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred EEEEeCC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 8888643 5899999999999999954 899999999999776666443344557999999999999999999999
Q ss_pred EEEEeCCCCCcccc
Q 001386 646 IKILETPESNSVDA 659 (1088)
Q Consensus 646 i~iwd~~~~~~~~~ 659 (1088)
|++|++.+++.+..
T Consensus 373 i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 373 LKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEECCC------
T ss_pred EEEEECCCCccccc
Confidence 99999998876554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=323.10 Aligned_cols=289 Identities=12% Similarity=0.055 Sum_probs=226.6
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC--cceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
...|.+.|++++|+|||+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 345667999999999999 7999999999999999987 44433 6789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc---eeEEecc-
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 483 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~---~~~~~~~- 483 (1088)
+++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++ +...+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999874444556789999999999999999 79999999999999999887 4778887
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC------------------CCceEEecCCCCceEEEEEccCCCEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
|...|.+++|++ ++.+|++++.||.|++||++. ......+ .|...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999955 678999999999999999853 2233344 7788899999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCce----eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe--ee------
Q 001386 546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LL------ 613 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~------ 613 (1088)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|+++++++++.++.+ +|+..... ..
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9975 55699999999987 77777777 899999999999999888776665 66654211 00
Q ss_pred ----------------------------EEEe---C-----------CCCCCCCceEEEecC-CC---EEEEEeCCCcEE
Q 001386 614 ----------------------------TTID---A-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 647 (1088)
Q Consensus 614 ----------------------------~~~~---~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 647 (1088)
..+. . ..+...|.++++.++ +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000 0 013446888886654 33 699999999999
Q ss_pred EEeC
Q 001386 648 ILET 651 (1088)
Q Consensus 648 iwd~ 651 (1088)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=309.55 Aligned_cols=289 Identities=16% Similarity=0.255 Sum_probs=244.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
..+.|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 47889999875 688875 8999999999998775422 567889999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccCCccEEEEeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~ 494 (1088)
.||+|+|||+.+++.++ .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 788999999998885 45 7999999999999998864 4567889999999999884
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCc----eEEecCCCCceEEEEEccCCCEE-EEEeeCCCCceeEEEEeCCCCceeE
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
+++.++++++.||.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++...
T Consensus 240 --~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred --CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 5778999999999999999987653 34567788899999999976654 44443 346789999999999998
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
.+..+. .+.++.|+++++.+++++ .|+.|+|||+.+++++..+.+|.. .|.+++|+|||++|++|+.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEE
Confidence 887655 788999999999998865 789999999999999999987754 799999999999999999999999
Q ss_pred EEeCCCCCcccccc
Q 001386 648 ILETPESNSVDAAG 661 (1088)
Q Consensus 648 iwd~~~~~~~~~~~ 661 (1088)
|||+.+........
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=296.45 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=211.4
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC--cceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
+.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|.+.|.+++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence 356789999999999999999 6999999999999999754 33332 7889999999999
Q ss_pred CCC--CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce--e
Q 001386 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--T 478 (1088)
Q Consensus 405 s~d--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~~--~ 478 (1088)
+|+ |++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. .
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence 874 899999999999999999987522 23357789999999999998 77 899999999999999987642 4
Q ss_pred EEeccCCccEEEEeeeeeC-----------CceEEEEEecCCeEEEEECCCCC----ceEEecCCCCceEEEEEccCC--
Q 001386 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG-- 541 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g-- 541 (1088)
..+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 6778999999999997752 35799999999999999998766 445678899999999999995
Q ss_pred -CEEEEEeeCCCCceeEEEEeCCCCc--ee-EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 542 -RRLFSCGTSKEGESFLVEWNESEGA--IK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
++|++++. ++.|++||..++. .. ..+. ...+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEEC----CCcEEEEEeCCCCCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78998876 5569999988753 12 2221 11223789999999999999999999999999976
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=310.33 Aligned_cols=343 Identities=12% Similarity=0.071 Sum_probs=252.8
Q ss_pred cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEE
Q 001386 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 526 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1088)
..+..+|.+++|+|++++|++++. ++.|++||..+++ .+..+.+|. ..|.+++|+|+++++++++.||.|+
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAY 77 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeC----CCEEEEEeCCCCcEEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEE
Confidence 447789999999999999999865 5669999999987 888888887 8999999999999999999999999
Q ss_pred EEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccc
Q 001386 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1088)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 683 (1088)
+||+.+++.........+...+.+++|+|+++++++++.|+.|++|++..+.......
T Consensus 78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---------------------- 135 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK---------------------- 135 (372)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----------------------
T ss_pred EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----------------------
Confidence 9999998877666554555679999999999999999999999999987543211000
Q ss_pred cCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
.....|...|.+++|+|+++.+++++.||.+++|++
T Consensus 136 --------------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 136 --------------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp --------------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred --------------------------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 000114455666666666666666666666666664
Q ss_pred cCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeE
Q 001386 764 PRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTAT 843 (1088)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 843 (1088)
..... .... .. .+.+ .....++.+..+..|...|.
T Consensus 172 ~~~~~-------------~~~~-----------~~--------~~~~-------------~~~~~~~~~~~~~~~~~~v~ 206 (372)
T 1k8k_C 172 YIKEV-------------EERP-----------AP--------TPWG-------------SKMPFGELMFESSSSCGWVH 206 (372)
T ss_dssp CCTTT-------------SCCC-----------CC--------BTTB-------------SCCCTTCEEEECCCCSSCEE
T ss_pred ccccc-------------cccc-----------cc--------cccc-------------cccchhhheEecCCCCCeEE
Confidence 32211 0000 00 0000 01345677788888999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC--Cceeeeee
Q 001386 844 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG--WGIQTCRS 921 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~--~~~~~~~~ 921 (1088)
+++|+| ++++|++++.||.|++||+.+++.+..+.+|..+|.+++|+|++++|+++ .|+.|++|++.. ++ ...
T Consensus 207 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~---~~~ 281 (372)
T 1k8k_C 207 GVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK---LSF 281 (372)
T ss_dssp EEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE---EEE
T ss_pred EEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce---EEE
Confidence 999999 88999999999999999999999999999999999999999999988877 899999999987 53 122
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEE---EcCcceee------eeeecCCCcCEEEEEEe-eCC---CE
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY---EAEELTCL------KQWFPISSVPISQATFS-CDC---RM 988 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vw---d~~~~~~~------~~~~~~h~~~v~~l~fs-~dg---~~ 988 (1088)
+.....+.. -..+....+++| +.. +... ..+..+|...|++++|. ++| .+
T Consensus 282 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~ 344 (372)
T 1k8k_C 282 GGRLDVPKQ----------------SSQRGLTARERFQNLDKK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ 344 (372)
T ss_dssp CCCCCCC------------------------CHHHHHHHCCCC-C---------CCCSSSSSSCEEEEEEEESTTTSCSE
T ss_pred eeccCcccc----------------chhhhcchhhhhhhcccc-cccccCccccccccccccCCcceeEEecCCCcceee
Confidence 222222111 011122334455 422 2222 33345899999999865 676 99
Q ss_pred EEEEeCCCcEEEEEcCCCce
Q 001386 989 VFTSFVDGTLSIHEASNLEV 1008 (1088)
Q Consensus 989 l~s~s~dg~v~vwd~~~~~~ 1008 (1088)
|++|+.||.|++|++.+++.
T Consensus 345 l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 345 FCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEEEETTSEEEEEEHHHHHH
T ss_pred EEEecCCCceEEEEecChhH
Confidence 99999999999999988754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=304.88 Aligned_cols=288 Identities=12% Similarity=0.144 Sum_probs=257.7
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
..+.+|...|++++|+|+|++||+++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3488999999999999999999999999999999999987655 6889999999999999999 8999999999999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC-----CeEEEEECCCCCc-----------eEEecCCCC--c
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G 531 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~ 531 (1088)
||+.+++++..+. +...|.+++|+ +++.++++++.+ |.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999888 88999999995 467899999999 9999999976542 223334444 8
Q ss_pred eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 532 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|++++|++++.|+.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999875 56699999998 78888888887 89999999999999999999999999999999
Q ss_pred eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC--------------cEEEEeCCCCCcccccccccCcceeeeecCCC
Q 001386 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
+.+..+... ..+..++|+|+++++++++.++ .+++||..+++.+..+.+|...|.+++++
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 3589999999999999999988 89999999999999999999999999998
Q ss_pred cceeccccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
|+++++++++.|+.+++|++..
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECcc
Confidence 5788899999999999999764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=310.42 Aligned_cols=316 Identities=11% Similarity=0.027 Sum_probs=246.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.-.+.|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|||
T Consensus 13 ~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg--- 64 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE--- 64 (588)
T ss_dssp CCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC---
T ss_pred HhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC---
Confidence 3346999999999999 799999999999 7555532 45799999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc-----
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA----- 486 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~----- 486 (1088)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||.++ ++..+. |..
T Consensus 65 ----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~ 130 (588)
T 2j04_A 65 ----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSR 130 (588)
T ss_dssp ----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTT
T ss_pred ----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccc
Confidence 4555555554332211 12 5688999999999999 799999999999999544 667777 665
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-------eEEe----cCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
.|.+++| ++||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. ++
T Consensus 131 sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~ 202 (588)
T 2j04_A 131 TYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NN 202 (588)
T ss_dssp CEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TC
T ss_pred cEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CC
Confidence 4999999 55889999999999999999998753 3444 5566799999999999 666654 55
Q ss_pred eEEEEeCCCCce---eEEEe-ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE-
Q 001386 556 FLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 630 (1088)
Q Consensus 556 ~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 630 (1088)
.+++||+.++.. .+++. +|. ..|.+++|+ ++.+++++ +++|++||+.+++.......| ...+..++|
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~ 274 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLN 274 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEET
T ss_pred eEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEee
Confidence 699999998774 35563 555 789999999 68888887 699999999988774444343 457999999
Q ss_pred -ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcc
Q 001386 631 -NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1088)
Q Consensus 631 -s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 709 (1088)
+|++..+++++.+|+ ++|.... +++ +|++..+++. |++
T Consensus 275 ~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~~ 313 (588)
T 2j04_A 275 HEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EKK 313 (588)
T ss_dssp TCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HHH
T ss_pred eCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CCE
Confidence 999999999999999 9999871 223 3667777765 899
Q ss_pred ceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc
Q 001386 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1088)
Q Consensus 710 i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 754 (1088)
+++|+...... . ...+...|.+++|||||+.+++++.
T Consensus 314 v~lW~~~g~~l---~-----~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 314 FKKWSTIWNEF---N-----NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHTTTTTTSS---S-----SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEECCCCce---e-----eeccceEEEEEEECCCCCEEEEEEe
Confidence 99999743321 1 1123567999999999998887764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=310.58 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=250.9
Q ss_pred eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC------ceEEecCCCCceEEEEEccC----C---CEE
Q 001386 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL 544 (1088)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~s~~----g---~~l 544 (1088)
...+.+|...|++++|++ .+|++++.||.|++||+.... ....+..+...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999965 599999999999999999888 67788889999999999999 9 999
Q ss_pred EEEeeCCCCceeEEEEeCCCCce-----eEEEeccccc--cccEEEEEEe----CCCCE-EEEEeCCCcEEEEEcCC---
Q 001386 545 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK--- 609 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~s~dg~i~iwd~~~--- 609 (1088)
++++. ++.|++||+.+++. ...+..|..+ ...|.+++|+ |++++ +++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99876 45599999999887 8888877322 3789999999 99999 99999999999999998
Q ss_pred ---CeeeE-----EEeC-----CCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCC
Q 001386 610 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 610 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-------------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence 66665 6643 3334568999999999 999999999999999875422111000
Q ss_pred cceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecccc
Q 001386 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 756 (1088)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 756 (1088)
.
T Consensus 226 ----------------------------------------------------------------------------~--- 226 (397)
T 1sq9_A 226 ----------------------------------------------------------------------------Q--- 226 (397)
T ss_dssp ----------------------------------------------------------------------------C---
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred ceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCC---CCCeeEEEEecCCCEEEEEe-C---CcEEEEEcCCc
Q 001386 757 VHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYIVMTF 829 (1088)
Q Consensus 757 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~-d---g~i~iwd~~~~ 829 (1088)
.+| ...|.+++|+|++++|++++ + +.|++||+.++
T Consensus 227 --------------------------------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 227 --------------------------------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp --------------------------------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred --------------------------------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 014 67788999999999999987 7 89999999999
Q ss_pred eeEEEecC-------------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec------cc---------
Q 001386 830 KTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH--------- 881 (1088)
Q Consensus 830 ~~~~~~~~-------------~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~------~h--------- 881 (1088)
+.+..+.. |...|.+++|+| ++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp CEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred cccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence 99999998 999999999999 89999999999999999999999999999 88
Q ss_pred ------cCCeeEEEECCCC----------CEEEEEeCCCcEEEEEcCCC
Q 001386 882 ------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 882 ------~~~V~~l~~s~dg----------~~las~s~Dg~i~iwd~~~~ 914 (1088)
...|.+++|+|++ ++|++++.||.|++|++.++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=329.42 Aligned_cols=211 Identities=19% Similarity=0.315 Sum_probs=183.9
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-----ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCe
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1088)
.+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|+ +++.+|++|+.||.
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--SDGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--CCCCEEEEEeCCCc
Confidence 57899999999999998654 8999999999999998764 3457889999999999995 57789999999999
Q ss_pred EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC
Q 001386 511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
|++||+.+......+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999888899999999999999999999999986 4569999987665544443333445889999999987
Q ss_pred --CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 591 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 591 --~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
..+++++.|++|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.+++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6899999999999999999999988887654 69999999999999999999999999988653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=317.72 Aligned_cols=330 Identities=10% Similarity=0.031 Sum_probs=249.1
Q ss_pred CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 528 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
-...|.+++|+|||+++|+++. +++|+ |...++.+ .+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~l---~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKDI---NCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSCC---SSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--ccccccee---cCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 3457899999999999999875 66687 76666544 5666 899999999998 4566555554
Q ss_pred CCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCc
Q 001386 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1088)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 687 (1088)
+. ...+.... ...|.+++|||+|.+||+++.||.|++|+... .+..+. |...+
T Consensus 75 ~~---~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 QQ---NGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp CS---SCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred CC---ceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 32 22222112 45799999999999999999999999999542 111111 11000
Q ss_pred eeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCC
Q 001386 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1088)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 767 (1088)
....+.+++|||||++|++++.||.|++|++..+.
T Consensus 128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 12458899999999999999999999999976542
Q ss_pred CCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCcee---EEEe-cCCCCCeE
Q 001386 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPSPTAT 843 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~-~~~~~~i~ 843 (1088)
... ++. ..+.+......+|...|.+++|+||| +++++.|++|++||+.+++. .+++ .+|...|.
T Consensus 163 l~~-----~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 163 ENT-----PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp TTC-----CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred ccc-----ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 100 000 00122221223588999999999999 55555699999999988773 3566 47888999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEE--CCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001386 844 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQTCRS 921 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~ 921 (1088)
+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 231 svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-------- 297 (588)
T 2j04_A 231 DLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-------- 297 (588)
T ss_dssp CEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS--------
T ss_pred EEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--------
Confidence 99998 37888887 699999999988874444489999999999 999999999999999 9999872
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
++|+||+..++.. |+++++|+...+. +. .+.+ ...|.+++|||||+.+|+++
T Consensus 298 ----------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~-~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 ----------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FN-NYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ----------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SS-SSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ----------------EEECCCceEEEEc-CCEEEEEECCCCc-ee-eecc-ceEEEEEEECCCCCEEEEEE
Confidence 5599999988886 9999999986555 33 2333 77799999999999999885
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=307.89 Aligned_cols=348 Identities=14% Similarity=0.129 Sum_probs=247.6
Q ss_pred hhheeecccCCCCceeeeecC-CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
......+.+|.+.|++++|+| +|+ +|++|+.||.|+|||+.+++.......... .........+|...|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~ 105 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETV 105 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEE
T ss_pred CcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEE
Confidence 345677889999999999999 998 799999999999999999876654221100 000011124699999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC---CCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 403 ~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
+|+| ++.+|++++.||.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++||+.+++.+
T Consensus 106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCC
T ss_pred EEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCccee
Confidence 9999 88899999999999999999987554 23 47788999999984 44 7899999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCce-EEEEEecCCeEEEEECCCCCc-eEEe---------------cCCCCceEEEEEccCC
Q 001386 479 YSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANG 541 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~---------------~~~~~~v~~~~~s~~g 541 (1088)
..+.+|...|.+++|++ ++. ++++++.||.|++||++.... ...+ ..+...|.+++|+|++
T Consensus 180 ~~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 180 HILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp EEECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred eeecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 99999999999999965 445 699999999999999987652 2222 4567789999999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc--ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
++|++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..|
T Consensus 258 ~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 258 LHLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp SEEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred CEEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence 99999986 45599999999877655443320 0112222233344567778888999999999999999999866
Q ss_pred CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCC
Q 001386 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1088)
.. .|.+++|+|++++|++++.||.|++|++.+++.+......... ..+. .....
T Consensus 334 ~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~ 387 (408)
T 4a11_B 334 YK--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFED 387 (408)
T ss_dssp SS--CEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred CC--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------cccce
Confidence 44 6999999999999999999999999999988765543322111 1111 12334
Q ss_pred cccccccCccceecccc
Q 001386 700 PEISVEAENKSEVEKPL 716 (1088)
Q Consensus 700 ~l~~~~~d~~i~vw~~~ 716 (1088)
...+.+.++.+++|+..
T Consensus 388 ~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 388 AWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------
T ss_pred eecccCccCceeecCCc
Confidence 45567778999999853
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=292.80 Aligned_cols=252 Identities=17% Similarity=0.299 Sum_probs=212.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~v 469 (1088)
+.+|...|.+++|+|||++||+|+.|++|+|||+.++.. +....+.+|.+.|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 233478899999999999874 77 8999999999999
Q ss_pred EeCCCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc--eEEecCCCCceEEEEEccC-----
Q 001386 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 540 (1088)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 540 (1088)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567888999999999998765578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEeeCCCCceeEEEEeCCCCc----eeEEEeccccccccEEEEEEeCCC---CEEEEEeCCCcEEEE
Q 001386 541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 605 (1088)
Q Consensus 541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iw 605 (1088)
+++|++++. ++.|++||+.++. ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 4569999998776 566777777 899999999985 889999999999999
Q ss_pred EcCCCe--ee-EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 606 DMNKVQ--LL-TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 606 d~~~~~--~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
|+.++. .. ..+........|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998743 12 2232233345689999999999999999999999999763
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=289.49 Aligned_cols=282 Identities=16% Similarity=0.269 Sum_probs=237.6
Q ss_pred ceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~ 416 (1088)
.++|+||+++ +||+|. |++|+|||+.+|+++.... +.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999987 678775 8999999999998876522 5678999999999999999999999
Q ss_pred CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccCCccEEEEeeee
Q 001386 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~ 495 (1088)
||+|++||+.+++.++ .+.+|...+.++.+. +. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA- 159 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc-
Confidence 9999999999997665 678999988876654 55 7999999999999998876 4557888999999999884
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCc----eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
+++.++++++.||.|++||+++.+. ......+...+.+++++|++..++.... +..++.|++||..........
T Consensus 160 -~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 160 -PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp -TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred -CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 5678999999999999999987653 3455567778999999998776654332 234678999999988877665
Q ss_pred eccccccccEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
... ..+..+.|+|++..+++++ .|+.|++||+.+++++..+..|.. .|.+++|+|++++|++++.||+|+||
T Consensus 238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 543 5799999999999988765 799999999999999999987654 79999999999999999999999999
Q ss_pred eCCCC
Q 001386 650 ETPES 654 (1088)
Q Consensus 650 d~~~~ 654 (1088)
|+.+.
T Consensus 312 d~~~~ 316 (318)
T 4ggc_A 312 RCFEL 316 (318)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 98754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-32 Score=302.21 Aligned_cols=299 Identities=16% Similarity=0.244 Sum_probs=243.3
Q ss_pred eecCCCCCeEEEEECCC----CCEEEEEeCCCEEEEEEccCCCcccceeEec--cCCCCEEEEEecCC----CCcEEEEE
Q 001386 391 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT 460 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~d----g~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~l~l~s 460 (1088)
+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+..+.... .|...|.+++|+|+ ++ ++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46689999999999984 4566666677799999999887665443332 26688999999999 55 7999
Q ss_pred EeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe---cCCCCceEEEEE
Q 001386 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 537 (1088)
Q Consensus 461 ~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~ 537 (1088)
|+.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999652 5679999999999999999998888777 678889999999
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec-------------------------cccccccEEEEEEeCCCCE
Q 001386 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 538 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~ 592 (1088)
+|++++|++++. ++.|++||+.+++....+.. ...+...|.+++|+ +++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 999999999986 45599999998765543332 00123889999998 779
Q ss_pred EEEEeCCCcEEEEEcCCCee--------------eEEEeCCCCCCCCceEEEecC--CCEEEEEeCCCcEEEEeCCCCCc
Q 001386 593 ILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
+++++.|+.|++||+.++.. +..+..+. ..|.+++|+|+ +++|++++.||.|++||+.+++.
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 99999999999999987644 66666554 36899999999 99999999999999999987654
Q ss_pred ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccccc
Q 001386 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1088)
Q Consensus 657 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1088)
..... ..+....+...
T Consensus 322 ~~~~~----------------------------------------------------------------~~~~~~~~~~~ 337 (366)
T 3k26_A 322 HKAKC----------------------------------------------------------------TTLTHHKCGAA 337 (366)
T ss_dssp GGCEE----------------------------------------------------------------EEECCTTCCSC
T ss_pred ccccc----------------------------------------------------------------eEEcccccCCc
Confidence 32100 00111113678
Q ss_pred EEEEEEecCCceEEEeccccceEEEEcc
Q 001386 737 ISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~v~iw~~~ 764 (1088)
|.+++|+|++++|++++.||.|++|++.
T Consensus 338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 IRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999999999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-31 Score=287.96 Aligned_cols=295 Identities=15% Similarity=0.191 Sum_probs=244.0
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.+....+.+|. ..|.+++| ++++++++++.||.|++||+.+++....+..+.. .|.+++|+|+++++++++.||
T Consensus 8 ~~~~~~l~~h~---~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATLKGHD---QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG--FLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEECCCS---SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSS--CEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHhhCCC---CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCc--cEEEEEECCCCCEEEEecCCC
Confidence 36677888888 99999999 9999999999999999999999998888887643 699999999999999999999
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.+++|++.........
T Consensus 82 ~i~~~~~~~~~~~~~~---------------------------------------------------------------- 97 (313)
T 3odt_A 82 MINGVPLFATSGEDPL---------------------------------------------------------------- 97 (313)
T ss_dssp CEEEEETTCCTTSCC-----------------------------------------------------------------
T ss_pred eEEEEEeeecCCCCcc----------------------------------------------------------------
Confidence 9999998743110000
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1088)
.. + ..|...|.++
T Consensus 98 ---------------------------------------------------------------~~--~--~~~~~~i~~~ 110 (313)
T 3odt_A 98 ---------------------------------------------------------------YT--L--IGHQGNVCSL 110 (313)
T ss_dssp ---------------------------------------------------------------CE--E--CCCSSCEEEE
T ss_pred ---------------------------------------------------------------cc--h--hhcccCEEEE
Confidence 00 0 0266677788
Q ss_pred EEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-cc
Q 001386 805 ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HS 882 (1088)
Q Consensus 805 ~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~-h~ 882 (1088)
++ ++.++++++ ++.|++|| .++....+..|...+.+++|+|.++.++++++.||.|++|| .++.+..+.. |.
T Consensus 111 ~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~ 184 (313)
T 3odt_A 111 SF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHN 184 (313)
T ss_dssp EE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCS
T ss_pred Ee--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCc
Confidence 87 566788877 88999999 67888888899999999999886788999999999999999 5566677777 99
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
..|.+++|+|++. +++++.||.|++||+.+++. +....+|.. .|.+++|+|++.+++.+.|+.|++||+.+
T Consensus 185 ~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~---~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 185 DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-----LRTYEGHES---FVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE-----EEEEECCSS---CEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh-----hhhhhcCCc---eEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 9999999999998 99999999999999998653 333334443 79999999999655557899999999999
Q ss_pred ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 963 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
++++..+ ..|...|.+++|+||++ +++++.||.|++|++.+++......
T Consensus 256 ~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 256 GSLKQVI-TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp CCEEEEE-ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred CceeEEE-eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 9988874 57889999999999998 5679999999999999988765443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=297.01 Aligned_cols=310 Identities=13% Similarity=0.157 Sum_probs=242.9
Q ss_pred eecCCCCCeEEEEECCCCCEEE-EEeC---CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC---CCcEEEEEEeC
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGD 463 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~la-s~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~s~ 463 (1088)
++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ ++++++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 4677999999999999996555 5555 89999999998875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEeCCCCc-eeEEeccCCccEEEEeeee----eCCceEEEEEecCCeEEEEECCCCC-ceEEecCCCC----ceE
Q 001386 464 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GCT 533 (1088)
Q Consensus 464 d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~ 533 (1088)
|+.|++||+.+++ .+..+.+|...|.++.+.+ ++++.+|++++.||.|++||++... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997743 5678899999999999999999887 5556655443 788
Q ss_pred EEE----EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC---CCCEEEEEeCCCcEEEEE
Q 001386 534 RMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 534 ~~~----~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~dg~i~iwd 606 (1088)
+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..+.+++|+| ++.++++++.||.|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 888 7899999999975 55699999999887544 4444 7899999999 999999999999999999
Q ss_pred cCCCeeeEEEe-----CCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCccee
Q 001386 607 MNKVQLLTTID-----AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 607 ~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
+.+++....+. .+ ...|.+++|+|+++ ++++++.||.|++||+..+........
T Consensus 241 ~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------ 300 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAH--KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS------------------ 300 (357)
T ss_dssp EEEEETTTEEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT------------------
T ss_pred CcCCCcccceeeeccCCC--cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC------------------
Confidence 98877665554 44 44699999999998 899999999999999986643322110
Q ss_pred ccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEE-EeccccceE
Q 001386 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHL 759 (1088)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~dg~v~ 759 (1088)
++...... +... .......|...|.+++|+|+++.++ +++.||.++
T Consensus 301 ----------------~g~~~~~~---~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 301 ----------------EGIEMGVA---GSVS--------------LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ----------------TSCCCCCC---CEEE--------------EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred ----------------CCCccccc---cccc--------------eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 11111000 0000 0011123778999999999999998 799999999
Q ss_pred EEEccC
Q 001386 760 MWRWPR 765 (1088)
Q Consensus 760 iw~~~~ 765 (1088)
+|++..
T Consensus 348 iw~~~~ 353 (357)
T 3i2n_A 348 VLIVTK 353 (357)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 999764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=310.82 Aligned_cols=301 Identities=13% Similarity=0.199 Sum_probs=233.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC------------CCe
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 399 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~------------~~V 399 (1088)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence 4677999999999999 799999999999999998763110000 0000111266788 889
Q ss_pred EEEEECCCC--CEEEEEeCCCEEEEEEccCCCccc------------------------------------ceeE-eccC
Q 001386 400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH 440 (1088)
Q Consensus 400 ~~l~~s~dg--~~las~~~dg~i~vwd~~~~~~~~------------------------------------~~~~-~~~h 440 (1088)
.+++|+|++ .+|++++.|++|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998743210 0001 3689
Q ss_pred CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC-CceeE-------EeccCCccEEEEeeeeeCCc-eEEEEEecCCeE
Q 001386 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 511 (1088)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i 511 (1088)
...|.+++|+|+++ ++++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999965 55 799999999999
Q ss_pred EEEECCCCCc----eEEecCCCC------------ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC-CceeEEEecc
Q 001386 512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 574 (1088)
Q Consensus 512 ~iwd~~~~~~----~~~~~~~~~------------~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 574 (1088)
++||+++... ...+..+.. .|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 8999999999999998863 5699999997 8888888887
Q ss_pred ccccc------------cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-----------------------
Q 001386 575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 619 (1088)
Q Consensus 575 ~~~~~------------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 619 (1088)
..... .+..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422110
Q ss_pred -------CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.....|..++|+|++++||+++.++ +++|...
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7777643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=296.98 Aligned_cols=253 Identities=15% Similarity=0.205 Sum_probs=205.2
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~- 406 (1088)
.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++..... ..+.+|.+.|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 45679999999999999999 799999999999999988753211 12778999999999986
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce---eEE
Q 001386 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 480 (1088)
Q Consensus 407 -dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~~---~~~ 480 (1088)
++++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999987532 23367899999999999998 66 799999999999999987642 345
Q ss_pred eccCCccEEEEeeeeeC---------------CceEEEEEecCCeEEEEECCCCC---ceEEecCCCCceEEEEEccCC-
Q 001386 481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 541 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g- 541 (1088)
+.+|...|.+++|++.. ++.+|++|+.|+.|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997642 14689999999999999997553 455677888999999999987
Q ss_pred ---CEEEEEeeCCCCceeEEEEeCCCCc----eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 542 ---RRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 542 ---~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
++|++++. ++.|++|++.+.. ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999875 5679999987631 223445555 889999999999999999999999999975
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=295.10 Aligned_cols=286 Identities=9% Similarity=0.057 Sum_probs=242.3
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
....+|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++..... ..+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCC
Confidence 34568999999999999999 6899999999999999988722110 014469999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEc-cCCCcccceeEecc--CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC---------
Q 001386 408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 474 (1088)
Q Consensus 408 g~-~las~~~dg~i~vwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~--------- 474 (1088)
++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ .+++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87753 35778 999999999999 77 899999999999999988
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-CC--ceEEecCCCCceEEEEEcc-CCCEEEEEeeC
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LG--ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 550 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~ 550 (1088)
++++..+. |...|.+++|++ ++ +++++.||.|++||++. .. .......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 77777777 889999999953 43 99999999999999988 44 3345556777899999999 9999999975
Q ss_pred CCCceeEEEEeCCCC------ceeEEEecccc------ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
++.|++|+.... +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 556999999887 78888888751 124899999999999999999999999999999999988876
Q ss_pred C-CCCCCCceEEEecCCCEEEEEeCCCc-EEEEe
Q 001386 619 G-GGLPENPRICFNKNGTLLAVIANENR-IKILE 650 (1088)
Q Consensus 619 ~-~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd 650 (1088)
+ .. .|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h~~--~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNED--SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSS--EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCC--CceEec--CCCCeEEEEecCCccccccc
Confidence 5 43 578888 99999999999998 44444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-31 Score=300.99 Aligned_cols=278 Identities=21% Similarity=0.322 Sum_probs=240.5
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
..+|...|.|++| ||+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| +++
T Consensus 129 ~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~ 184 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DER 184 (435)
T ss_dssp CCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSS
T ss_pred ccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCC
Confidence 3467778998887 677 689999999999999999987765 7789999999999 789
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee---EEeccCCc
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGA 486 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~ 486 (1088)
+|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++||+.+++.. ..+.+|..
T Consensus 185 ~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp EEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred EEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC
Confidence 99999999999999999997655 6789999999999974 4 7999999999999999988766 67889999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.|.++++ ++.++++|+.||.|++||+++.+....+..+...+.++++ +++++++++. ++.|++||+.+++
T Consensus 258 ~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~ 327 (435)
T 1p22_A 258 AVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGA 327 (435)
T ss_dssp CEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCC
T ss_pred cEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCC
Confidence 9999988 4569999999999999999999999999999999999988 5789999876 4569999999999
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe---------eeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..|.. .|.+++| ++.+|
T Consensus 328 ~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l 398 (435)
T 1p22_A 328 CLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQI 398 (435)
T ss_dssp EEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCE
T ss_pred EEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEE
Confidence 999999888 88999988 78899999999999999997765 6777776644 6899999 78899
Q ss_pred EEEeCCCcEEEEeCCCCCcc
Q 001386 638 AVIANENRIKILETPESNSV 657 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~ 657 (1088)
++++.||.|++||+.+....
T Consensus 399 ~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 399 VSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp EECCSSSEEEEEC-------
T ss_pred EEEeCCCEEEEEECCCCCCc
Confidence 99999999999999876443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=296.74 Aligned_cols=284 Identities=19% Similarity=0.260 Sum_probs=226.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 001386 581 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1088)
Q Consensus 581 v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1088)
+.++.|++ ..+++++.|+.|++||+.+++....+... +...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM 172 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence 45566664 56888999999999999999988887763 3346999999999999999999999999998755322211
Q ss_pred ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEE
Q 001386 661 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 740 (1088)
Q Consensus 661 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 740 (1088)
.
T Consensus 173 ~------------------------------------------------------------------------------- 173 (401)
T 4aez_A 173 A------------------------------------------------------------------------------- 173 (401)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred EEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CC
Q 001386 741 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG 819 (1088)
Q Consensus 741 ~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg 819 (1088)
+|...|.+++| ++.++++++ +|
T Consensus 174 -------------------------------------------------------~~~~~v~~~~~--~~~~l~~~~~dg 196 (401)
T 4aez_A 174 -------------------------------------------------------GHQARVGCLSW--NRHVLSSGSRSG 196 (401)
T ss_dssp -------------------------------------------------------CCSSCEEEEEE--ETTEEEEEETTS
T ss_pred -------------------------------------------------------CCCCceEEEEE--CCCEEEEEcCCC
Confidence 14555666666 445677776 77
Q ss_pred cEEEEEcC-CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCC-CEE
Q 001386 820 VISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL-NIL 897 (1088)
Q Consensus 820 ~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~l 897 (1088)
.|++||+. ....+..+.+|...|.+++|+| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++
T Consensus 197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll 275 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL 275 (401)
T ss_dssp EEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEE
T ss_pred CEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEE
Confidence 88888887 4566778888999999999999 89999999999999999999999999999999999999999977 556
Q ss_pred EEEe--CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE---eCCeEEEEEcCcceeeeee-ec
Q 001386 898 VSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQW-FP 971 (1088)
Q Consensus 898 as~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~---~d~~i~vwd~~~~~~~~~~-~~ 971 (1088)
++++ .|+.|++||+.+++... ..... ..|.+++|+|++++++++ .|+.|++||+.+++..... ..
T Consensus 276 ~~~~gs~d~~i~i~d~~~~~~~~-----~~~~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~ 346 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATGARVN-----TVDAG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP 346 (401)
T ss_dssp EEECCTTTCEEEEEETTTCCEEE-----EEECS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE
T ss_pred EEecCCCCCEEEEEECCCCCEEE-----EEeCC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec
Confidence 6655 79999999999865332 22222 259999999999999994 4899999999987665543 46
Q ss_pred CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 972 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 972 ~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
+|...|.+++|+|||++|++++.||.|++|++.+++.+....
T Consensus 347 ~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 347 AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 899999999999999999999999999999999998876543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-31 Score=295.34 Aligned_cols=295 Identities=17% Similarity=0.200 Sum_probs=242.1
Q ss_pred CchhheeecccCCCCceeeeecCC---CCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
.|...++.+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 355677889999999999999999 56 799999999999999998 443311 1667999
Q ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe--cCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
.|.+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| +++++ ++++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999886443 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CCCCceEEEEEccCCCE----EEEEee
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 549 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~----l~~~~~ 549 (1088)
+++..+..+. .+.++.+. . ..+++++.++.+++|+++......... .......++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999998665 55556553 2 378999999999999998776544332 23445667777666554 888765
Q ss_pred CCCCceeEEEEeCCCC---ceeEEEeccccc---------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
++.|++||.... ..+..+.+|... ...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 566999999987 567777777610 1169999999999999999999999999999999999888
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.+.. .|.+++|+|++++|++++.|+..+.|+..
T Consensus 313 ~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 313 QLDQ--PISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCSS--CEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCCC--CceEEEECCCCCeEEEEeccccccccccc
Confidence 6543 69999999999999999998765554433
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=304.05 Aligned_cols=241 Identities=13% Similarity=0.105 Sum_probs=198.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCC--CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
.+.++|.+++|+|||++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 36789999999999999999999999999999987 4444 6779999999999999999 799999999999999
Q ss_pred CCCCc---eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecC-CCCceEEEEEccCCCEE
Q 001386 472 AVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 472 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~v~~~~~s~~g~~l 544 (1088)
+.+++ ....+.+|...|.+++|++ ++.+|++++.||.|++||++..+. ...+.. |...|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 99987 6778889999999999955 678999999999999999998763 556666 88899999999999999
Q ss_pred EEEeeCCCCceeEEEEeCC------------------CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001386 545 FSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1088)
++++. ++.|++||+. .++.+..+ +|. ..|.+++|+|+++++++++.||.|++||
T Consensus 162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99986 4559999985 34455555 555 8999999999999999999999999999
Q ss_pred cCCCee----eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 607 MNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 607 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999887 666766543 68999999999999999877666 66655
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=297.45 Aligned_cols=297 Identities=13% Similarity=0.174 Sum_probs=242.4
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 413 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~las 413 (1088)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35678999999876777789999999999966432210 1112678999999999999 9999999
Q ss_pred EeCCCEEEEEEccCCCcc----cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe--ccCCcc
Q 001386 414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 487 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~--~~~~~~ 487 (1088)
|+.||+|++||+.++... .....+.+|...|.+++|+|+++. ++++++.|+.|++||+.+++++..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 234478899999999999999844 7999999999999999999999999 889999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-cCCCCc-eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+... +.+++|+|++++++++.. +..++.|++||+.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999955 7789999999999999999998888777 566654 899999999999988732 223778999999987
Q ss_pred ce-eEEEe-ccccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCee-eEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 566 AI-KRTYQ-GLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 566 ~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
.. +.... .+. ..+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++
T Consensus 256 ~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-- 330 (402)
T 2aq5_A 256 EEPLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-- 330 (402)
T ss_dssp SSCSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--
T ss_pred cCCceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--
Confidence 64 33333 233 67999999999999975 55799999999999874 555554444457999999999988764
Q ss_pred CCCcEEEEeCCCCC
Q 001386 642 NENRIKILETPESN 655 (1088)
Q Consensus 642 ~dg~i~iwd~~~~~ 655 (1088)
.++.+++|++.++.
T Consensus 331 ~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 331 KCEIARFYKLHERK 344 (402)
T ss_dssp GTEEEEEEEEETTE
T ss_pred cceeEEEEEcCCCc
Confidence 56799999998653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-30 Score=293.71 Aligned_cols=281 Identities=19% Similarity=0.236 Sum_probs=242.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
-..+.|+||++ +.||+|. |++|+|||+.+|+..+.. .+.+|...|++++|+|+|+ +|++|+.||+|++||+.+++
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCc
Confidence 35678999985 4788775 899999999999866533 4668889999999999999 89999999999999999999
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
++..+.+|...+.++++ ++.++++|+.|+.+++||...... ...+..|...+..+.++|+++++++++. ++
T Consensus 181 ~~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~ 252 (420)
T 4gga_A 181 RLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DN 252 (420)
T ss_dssp EEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TS
T ss_pred EEEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----cc
Confidence 99999999999999877 346999999999999999987554 4577889999999999999999999986 45
Q ss_pred eEEEEeCCCCce----eEEEeccccccccEEEEEEeCCCCEE-EE--EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 556 FLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 556 ~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
.+++|+..+++. +.....|. ..|.+++|+|++..+ ++ |+.|++|++||+.+++++..+..+. .+.++
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~ 326 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSI 326 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEE
T ss_pred cceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeee
Confidence 599999987653 45555555 899999999976544 44 3579999999999999999987654 47899
Q ss_pred EEecCCCEEEEEe--CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccccc
Q 001386 629 CFNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1088)
Q Consensus 629 ~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 706 (1088)
.|+|+++.+++++ .|+.|+|||+.+++.+..+.+|...|.+++|+ |+|.++++++.
T Consensus 327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~ 384 (420)
T 4gga_A 327 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAA 384 (420)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEET
T ss_pred eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEec
Confidence 9999999988876 68999999999999999999999999999998 67889999999
Q ss_pred Cccceecccccc
Q 001386 707 ENKSEVEKPLFA 718 (1088)
Q Consensus 707 d~~i~vw~~~~~ 718 (1088)
|++|++|++...
T Consensus 385 D~tvriWdv~~~ 396 (420)
T 4gga_A 385 DETLRLWRCFEL 396 (420)
T ss_dssp TTEEEEECCSCS
T ss_pred CCeEEEEECCCC
Confidence 999999997643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=291.73 Aligned_cols=250 Identities=18% Similarity=0.323 Sum_probs=204.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~ 468 (1088)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999887421 23468899999999999864 67 799999999999
Q ss_pred EEeCCCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccC---
Q 001386 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1088)
Q Consensus 469 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 540 (1088)
+||+++++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999998766678999999999999999987643 2345567778999999998
Q ss_pred --------------CCEEEEEeeCCCCceeEEEEeCCCC---ceeEEEeccccccccEEEEEEeCCC----CEEEEEeCC
Q 001386 541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 599 (1088)
Q Consensus 541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~d 599 (1088)
+++|++++. ++.|++||...+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888765 566999999755 3556677776 899999999986 789999999
Q ss_pred CcEEEEEcCCC---e-eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 600 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 600 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
++|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999998763 1 12233333 3468999999999999999999999999976
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=289.34 Aligned_cols=307 Identities=10% Similarity=0.112 Sum_probs=227.0
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
.+.+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECC
T ss_pred cccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcC
Confidence 356789999999999999999 7899999999999999987533211 112678999999999999
Q ss_pred --CCCEEEEEeCCCEEEEEEccCCCcc------cceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 407 --DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 407 --dg~~las~~~dg~i~vwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
|+++|++|+.||.|++||+.+++.. .....+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.+++
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChH
Confidence 6999999999999999999987431 334467899999999999999 88 89999999999999999887
Q ss_pred eeEEec-------------cCCccEEEEeeeee-CCceEEEEEecCCeEEEEECCCCCc--eEEecCCCCceEEEEEccC
Q 001386 477 RTYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN 540 (1088)
Q Consensus 477 ~~~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~ 540 (1088)
.+..+. .|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 664443 57888999999764 1357999999999998888777665 5567778889999999999
Q ss_pred C----CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE----eCCCcEEEEEcCCCee
Q 001386 541 G----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 541 g----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~dg~i~iwd~~~~~~ 612 (1088)
+ ++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.
T Consensus 226 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 226 IGRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp SSCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEE
T ss_pred CCCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccE
Confidence 8 78998876 5569999998776544433332 233333344443333333 3445566777777777
Q ss_pred eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 001386 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1088)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1088)
+..+..|.. .|.+++|+|++++|++++.||.|++|++.+++.+..+
T Consensus 299 ~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSS--CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecccc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 888876644 6999999999999999999999999999987655443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=297.90 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=208.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------ccceeEeccCC------------CCEEEEEecCCC-
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 453 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~- 453 (1088)
|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998762 11244678998 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEeCCCCcee---------------------------------------EE-eccCCccEEEEe
Q 001386 454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 492 (1088)
Q Consensus 454 -~~l~l~s~s~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 492 (1088)
. .+++++.|++|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7899999999999998765432 12 367999999999
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEE--------ecCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEEeCC
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|++ ++.+|++| .||.|++||++....... +..+...|.+++|+|++ ++|++++. ++.|++||++
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 965 67899998 799999999985443332 55778899999999999 89999886 4569999999
Q ss_pred CCce----eEEEecccc---------ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCC-----
Q 001386 564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 624 (1088)
Q Consensus 564 ~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 624 (1088)
+++. +..+.++.. +...|.+++|+|+++++++++. +.|++||+.+ ++++..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9887 788887760 0128999999999999999999 9999999997 888888877643211
Q ss_pred --------CceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 625 --------v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-29 Score=271.62 Aligned_cols=283 Identities=16% Similarity=0.211 Sum_probs=229.7
Q ss_pred EEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE
Q 001386 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 816 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1088)
.+.++||+++ +++.+.|++|++||+..+ .++...... +|...|.+++|+|+++++++|
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~tg------------------~~~~~~~~~--~~~~~V~~v~~~~~~~~l~sg 85 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSASSG------------------DILQLLQME--QPGEYISSVAWIKEGNYLAVG 85 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETTTC------------------CEEEEEECC--STTCCEEEEEECTTSSEEEEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECCCC------------------CEEEEEEec--CCCCeEEEEEECCCCCEEEEE
Confidence 4678999886 445567999999986543 334443332 488899999999999999999
Q ss_pred e-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeeccccCCeeEEEECCCC
Q 001386 817 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 817 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~-~~~~~l~~h~~~V~~l~~s~dg 894 (1088)
+ |++|++||+.+++.+..+.+|...+.++.+. +.++++|+.++.+++|+..++ ..+..+.+|...+..+.+++++
T Consensus 86 s~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 86 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred ECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 8 8999999999999999999999988877664 469999999999999999875 4567889999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-E---eCCeEEEEEcCcceeeeeee
Q 001386 895 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V---HETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 895 ~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~---~d~~i~vwd~~~~~~~~~~~ 970 (1088)
++|++++.||+|++||+.+++........ ...+. ..|.+++++|++..++. + .++.|++||..........
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~- 237 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV- 237 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-
T ss_pred CEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-
Confidence 99999999999999999986533222211 12222 36899999998775553 2 4678999999988876653
Q ss_pred cCCCcCEEEEEEeeCCCEEEEEe--CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001386 971 PISSVPISQATFSCDCRMVFTSF--VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1048 (1088)
Q Consensus 971 ~~h~~~v~~l~fs~dg~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d 1048 (1088)
.+...+..++|++++..+++++ .|+.|++||+.+++++..+..+ .-...+++|+| |+.+|++|+.|
T Consensus 238 -~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH----------~~~V~~l~~sp-dg~~l~S~s~D 305 (318)
T 4ggc_A 238 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------TSRVLSLTMSP-DGATVASAAAD 305 (318)
T ss_dssp -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC----------SSCEEEEEECT-TSSCEEEEETT
T ss_pred -cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC----------CCCEEEEEEcC-CCCEEEEEecC
Confidence 4578899999999999988765 7999999999999999887621 13457799999 89999999999
Q ss_pred CcEEEEeCCCCCC
Q 001386 1049 GEVYVIEPNEPGD 1061 (1088)
Q Consensus 1049 g~v~~w~l~~~~~ 1061 (1088)
|+|++||+.+.+|
T Consensus 306 ~~v~iWd~~~~dP 318 (318)
T 4ggc_A 306 ETLRLWRCFELDP 318 (318)
T ss_dssp TEEEEECCSCCCC
T ss_pred CeEEEEECCCCCC
Confidence 9999999977653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=288.13 Aligned_cols=261 Identities=13% Similarity=0.152 Sum_probs=216.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC--cceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.+++++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+.. +.+|...|.++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~ 61 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRV 61 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEE
T ss_pred CccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEE
Confidence 35678899999999999999999 6899999999999999843 33322 77899999999
Q ss_pred EECCC--CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc--
Q 001386 403 VWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS-- 476 (1088)
Q Consensus 403 ~~s~d--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~-- 476 (1088)
+|+|+ +++|++++.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++.
T Consensus 62 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 62 DWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCC
T ss_pred EeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCce
Confidence 99987 99999999999999999998752 123367789999999999999 88 89999999999999999874
Q ss_pred eeEEeccCCccEEEEeeeeeC-----------CceEEEEEecCCeEEEEECCCCCc----eEEecCCCCceEEEEEccC-
Q 001386 477 RTYSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN- 540 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~- 540 (1088)
....+.+|...|.+++|++.. ++.++++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence 345677899999999997642 578999999999999999987654 3466778889999999999
Q ss_pred --CCEEEEEeeCCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 541 --GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 541 --g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
+++|++++. ++.|++||+.++.. .........+...+.+++|+|++++|++++.||.|++|++..+..
T Consensus 219 ~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 219 LLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SSSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 899999876 45599999998742 122222222348899999999999999999999999999975443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=290.54 Aligned_cols=274 Identities=16% Similarity=0.243 Sum_probs=237.5
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 347788998887 79999999999999999999987655 68899999999999 677 8999999999999999
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce---EEecCCCCceEEEEEccCCCEEEEEee
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
.+++++..+.+|...|.+++++ +.++++++.||.|++||+++.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 348999999999999999987765 567788889999998 7889999875
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
++.|++||+.+++.+..+.+|. ..+.++.++ ++++++|+.||.|++||+.+++.+..+..+.. .|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEE
Confidence 5669999999999999999888 889999884 68999999999999999999999999986644 588888
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCC---------cccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCc
Q 001386 630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1088)
| ++.++++|+.||.|++||+.++. .+..+.+|...|.++++. +..
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78899999999999999987665 566677777777776663 677
Q ss_pred ccccccCccceecccccc
Q 001386 701 EISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 701 l~~~~~d~~i~vw~~~~~ 718 (1088)
+++++.|++|++|++...
T Consensus 398 l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCSSSEEEEEC----
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999997643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=286.68 Aligned_cols=254 Identities=17% Similarity=0.304 Sum_probs=216.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~v 469 (1088)
+.+|...|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ ++ +|++++.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 1233468899999999999987 77 8999999999999
Q ss_pred EeCCCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEecCCCCceEEEEEcc------
Q 001386 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1088)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~------ 539 (1088)
||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||++... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999776437899999999999999998874 4456678888999999999
Q ss_pred -------CCCEEEEEeeCCCCceeEEEEeCCCCc----eeEEEeccccccccEEEEEEeCC---CCEEEEEeCCCcEEEE
Q 001386 540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1088)
Q Consensus 540 -------~g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 605 (1088)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ +.++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 4459999998765 445566666 89999999999 8999999999999999
Q ss_pred EcCCCe---eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
|+.++. ....+....+...+.+++|+|++++|++++.||.|++|++....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 998864 22333333344568999999999999999999999999998553
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=277.75 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=238.5
Q ss_pred ecCCCCCeEEEEECCC---CCEEEEEeCCCEEEEEEccC-CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcE
Q 001386 392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~d---g~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i 467 (1088)
+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ...+.+|...|.+++|+|+++ +|++++.||.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999998 4332 135778999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5569999999999878888999999999999999999988877777654 555555554 466666
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE----EEEEeCCCcEEEEEcCCC---eeeEEEeCCC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 620 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 620 (1088)
+. ++.+.+|+.............. ....+.++.+.++... +++++.||.|++|++... ..+..+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 4559999998765443322211 2355667777666554 999999999999999987 5566666553
Q ss_pred CC----------CCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceee
Q 001386 621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1088)
Q Consensus 621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 690 (1088)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 148999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcccccccCccceecccc
Q 001386 691 NEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 691 ~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|+++++++++.|+..+.|+..
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 678889999888877777744
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=277.69 Aligned_cols=285 Identities=10% Similarity=-0.001 Sum_probs=239.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
..+|.+.|.+++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. ++++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999988733333356689999999999999872 378899999999999
Q ss_pred C-CCCceeEEecc--CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC---------CCceEEecCCCCceEEEEEcc
Q 001386 472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 539 (1088)
Q Consensus 472 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~ 539 (1088)
+ .+++. ..+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77755 77888 999999999976 57999999999999999987 55555554 777899999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCC-Cce--eEEEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC-----
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 610 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 610 (1088)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777764 55699999998 553 23333444 7899999999 9999999999999999999887
Q ss_pred -eeeEEEeCCCC-------CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccc-cCcceeeeecCCCcceec
Q 001386 611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 681 (1088)
Q Consensus 611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~ 681 (1088)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77778876643 236899999999999999999999999999999988888887 88887776 3
Q ss_pred cccCCceeecCCCCCCCCcccccccCcc-ceeccc
Q 001386 682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 715 (1088)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~vw~~ 715 (1088)
++.++++++.|++ .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5778899999998 766664
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=282.96 Aligned_cols=300 Identities=12% Similarity=0.011 Sum_probs=234.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCc---ceeeeceeeeeeccc-----------------------------
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVWDIGAC----------------------------- 383 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~---~~~~~~~~~~d~~~~----------------------------- 383 (1088)
++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC------------------------------
T ss_pred cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccccc
Confidence 899999999999 56655 46899999999998 4432 221100
Q ss_pred -----------cccceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEEcc--CCCcccceeEeccCCCCEEEEEe
Q 001386 384 -----------SMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAF 449 (1088)
Q Consensus 384 -----------~~~~~~~~~~~h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~~~~ 449 (1088)
..........+|.+.|.+++|+|||++| |+++.||.|++||+. +++.+..+. ...|...|.+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISI 157 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEE
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEE
Confidence 0000111234677789999999999996 889999999999999 777655321 1367789999999
Q ss_pred cCCCCcEEEEEEeCCCcEEEEeCCCCceeE----EeccCCccEEEEeeeee-CCceEEEEEecCCeEEEEECCCCCceEE
Q 001386 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD 524 (1088)
Q Consensus 450 s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 524 (1088)
+|+++ +|++++.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+++......
T Consensus 158 sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 158 AEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp CTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred cCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 99999 89999999999999999887554 77889999999999764 2278999999999999999998887776
Q ss_pred -ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc----------------------cccccE
Q 001386 525 -YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSV 581 (1088)
Q Consensus 525 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v 581 (1088)
...|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....+
T Consensus 236 ~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp ECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred eecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 55788899999999 9999999985 5679999999999988886431 123568
Q ss_pred EEEEEeCCCCEEEEEe-CCCcEEEEEc--CCC---eeeEEEeCCCCCCCCceEEEecCCCEEEEEeC------CCcEEEE
Q 001386 582 SVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKIL 649 (1088)
Q Consensus 582 ~~~~~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw 649 (1088)
..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 9999999999999998 8999999999 565 666777665 35899999996544443332 4557888
Q ss_pred eCCC
Q 001386 650 ETPE 653 (1088)
Q Consensus 650 d~~~ 653 (1088)
.+..
T Consensus 388 ~~~~ 391 (450)
T 2vdu_B 388 EYNL 391 (450)
T ss_dssp EEET
T ss_pred EEEc
Confidence 7653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=277.84 Aligned_cols=296 Identities=11% Similarity=0.122 Sum_probs=221.2
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecC--CCCcEEEEEEeCCCc
Q 001386 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKT 466 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~s~d~~ 466 (1088)
.++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.|+.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 347899999999999999999999999999999999976432 33446789999999999999 577 8999999999
Q ss_pred EEEEeCCCC---------ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-----------
Q 001386 467 IKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------- 526 (1088)
Q Consensus 467 i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------- 526 (1088)
|++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999987 557888899999999999765337899999999999999998776543222
Q ss_pred --CCCCceEEEEEccC---CCEEEEEeeCCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCC----CEEEE
Q 001386 527 --APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILA 595 (1088)
Q Consensus 527 --~~~~~v~~~~~s~~---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 595 (1088)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|. ..|.+++|+|++ +++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEE
Confidence 45668999999997 899999875 55677787777765 55666666 899999999998 89999
Q ss_pred EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe----CCCcEEEEeCCCCCcccccccccCcceeee
Q 001386 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA----NENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1088)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1088)
++.||.|++||+.++......... .........++....++.+. ....+.+|+....+.+..+.+|...|.+++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 313 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313 (351)
T ss_dssp EETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred EcCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence 999999999999876554433222 11223333344433333332 344556666666677778888999999999
Q ss_pred ecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccccc
Q 001386 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 672 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 718 (1088)
|+ ++++++++++.|+.|++|++...
T Consensus 314 ~s----------------------~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 314 WN----------------------LTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EC----------------------SSSCCEEEEETTSCEEEEEECTT
T ss_pred Ec----------------------CCCCEEEEecCCCcEEEEecCcC
Confidence 98 57889999999999999998743
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=276.08 Aligned_cols=283 Identities=13% Similarity=0.120 Sum_probs=216.5
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
.++++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence 3456689999999999999999 789988765 789999887655421 22258889999
Q ss_pred CCCCEEE-EEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEecc
Q 001386 406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1088)
Q Consensus 406 ~dg~~la-s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~ 483 (1088)
++++.++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 9988885 56778999999999987665 343 66799999999864 3333 3789999999998 77766665
Q ss_pred CCccEEEEeeeeeCCceEEEE--EecCCeEEEEECCCCC----------------ceEEecCCCCceEEEEEccCCCEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 333444433 34555 6899999999998765 2567888999999999999999999
Q ss_pred EEeeCCCCcee-EEEEeCCCCceeEEEe-c-cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE--E-----
Q 001386 546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T----- 615 (1088)
Q Consensus 546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----- 615 (1088)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9985 676 9999999999999998 5 66 899999999999999999999999999997653211 1
Q ss_pred -------------EeCC-CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+... ........++|+++++.+++++.||.+++|++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0010 11122467999999999999999999999998754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=271.02 Aligned_cols=279 Identities=11% Similarity=0.102 Sum_probs=227.4
Q ss_pred eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEEcc
Q 001386 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH 426 (1088)
Q Consensus 348 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~ 426 (1088)
+++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|||++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999987754 3334 458999999999987 566689999999999
Q ss_pred CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE-EEE
Q 001386 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI 505 (1088)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 505 (1088)
+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|+ ++++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS--PDGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC--TTSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC--CCCCEEEEEe
Confidence 987654 444444 8999999999994 3456667899999999999998888754 467888885 466666 788
Q ss_pred ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEE
Q 001386 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1088)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1088)
+.|+.|++||+.+.+....+..+ ..+.+++|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~ 206 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGIA 206 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccceE
Confidence 88999999999988777766654 45689999999999865542 2567999999999888777643 4789999
Q ss_pred EeCCCCEEEEEe---CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE-EEEeCCCcEEEEeCCCCCcccccc
Q 001386 586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 586 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+.
T Consensus 207 ~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 999999999988 68999999999999998887654 36889999999877 566789999999999987776665
Q ss_pred cccC
Q 001386 662 VLSD 665 (1088)
Q Consensus 662 ~~~~ 665 (1088)
.+..
T Consensus 284 ~~~~ 287 (391)
T 1l0q_A 284 VGKN 287 (391)
T ss_dssp CSSS
T ss_pred CCcC
Confidence 5443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=250.40 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=207.2
Q ss_pred EEEEEe-cCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC
Q 001386 444 VNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1088)
Q Consensus 444 v~~~~~-s~d~~~l~l~s~s~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1088)
+.++-| .++.+.+.+++++ ...|++|+..++ ++++++.+|..+|..+.+.|+..+-.-++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 555556 3455555777777 568999999999 8899999999999999987644322211111
Q ss_pred CceEEecCCCCceEEEEEccC----CCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE
Q 001386 520 GARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 520 ~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-------------------------~g~lv~s 150 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-------------------------KRRLVSS 150 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-------------------------TTEEEEE
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-------------------------CCcEEEe
Confidence 223447889999999 999998753 25566543 3333333
Q ss_pred Ee--CCCcEEEEEc-CCCeeeEEEeCCCCCCCCceEEEec---CCCEEEEEeCCCcEEEEeCCCCCcccccccccCccee
Q 001386 596 AG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1088)
Q Consensus 596 ~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1088)
++ .|+.|++|++ .+|+.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.+++.+.++.++..
T Consensus 151 s~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~---- 224 (356)
T 2w18_A 151 SGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS---- 224 (356)
T ss_dssp ESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----
T ss_pred cccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----
Confidence 22 4778888888 44777777776654 578899999 789999999999999999999987776653221
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1088)
+...+.+++|+|+|..+
T Consensus 225 ---------------------------------------------------------------~v~~v~~vafSpdG~~l 241 (356)
T 2w18_A 225 ---------------------------------------------------------------YQASVCHKAYSEMGLLF 241 (356)
T ss_dssp -----------------------------------------------------------------CCCEEEEEEETTEEE
T ss_pred ---------------------------------------------------------------ceeeeEEEEECCCCCEE
Confidence 12356678899999887
Q ss_pred EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCC
Q 001386 750 FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT 828 (1088)
Q Consensus 750 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~ 828 (1088)
++++.+.. +| .+++|+ |++|++||..+
T Consensus 242 vs~s~~~~--~w--------------------------------------------------~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 242 IVLSHPCA--KE--------------------------------------------------SESLRSPVFQLIVINPKT 269 (356)
T ss_dssp EEEC----------------------------------------------------------------CCEEEEEEETTT
T ss_pred EEeccCCC--cc--------------------------------------------------eeeccCCCcEEEEEECCC
Confidence 77664311 11 356676 88999999999
Q ss_pred ceeEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCee-EEEECCCCCEEEEEeC
Q 001386 829 FKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGG 902 (1088)
Q Consensus 829 ~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~las~s~ 902 (1088)
++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|++|+.
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred CEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 9887765 356555544444 367999999999999999999999999999988765 5899999999999999
Q ss_pred CCcEEEEEc
Q 001386 903 DAQIFVWDV 911 (1088)
Q Consensus 903 Dg~i~iwd~ 911 (1088)
|++|+|||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=265.74 Aligned_cols=328 Identities=11% Similarity=0.112 Sum_probs=253.8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE-EEEecCCeEEEEECCCCCceEEecCCCCceEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
++++++.|+.|++||+.+++++..+..|. .+.+++|+ +++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s--~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVIS--PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEEC--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEEC--CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78899999999999999999999988765 47888885 466665 677799999999999888777776655 89999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
+|+|++++|++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 24679999999999888877644 68999999999988 677889999999999999998
Q ss_pred EEeCCCCCCCCceEEEecCCCEE-EEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCC
Q 001386 615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1088)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 693 (1088)
.+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778999999987542111000
Q ss_pred CCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCC
Q 001386 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1088)
Q Consensus 694 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~ 773 (1088)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe----CCcEEEEEcCCceeEEEecCCCCCeEEEEEcC
Q 001386 774 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 849 (1088)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 849 (1088)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.+++|+|
T Consensus 198 -----------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~ 253 (391)
T 1l0q_A 198 -----------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP 253 (391)
T ss_dssp -----------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT
T ss_pred -----------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc
Confidence 223455677788887777664 5789999999998888887654 578999999
Q ss_pred CCCcEE-EEEeCCCeEEEEEcCCceeeeeeccccCCee---EEEECCCC----------------------CEEEEEeCC
Q 001386 850 HDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSDAL----------------------NILVSSGGD 903 (1088)
Q Consensus 850 ~d~~~l-asg~~dg~i~lwd~~~~~~~~~l~~h~~~V~---~l~~s~dg----------------------~~las~s~D 903 (1088)
++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++ ..+...+.|
T Consensus 254 -dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~ 332 (391)
T 1l0q_A 254 -DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKD 332 (391)
T ss_dssp -TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBS
T ss_pred -CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCC
Confidence 67666 6778899999999999999988877765432 12333211 235556678
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 904 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 904 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.++++|++..+.... . .-....|+++|.+.+.
T Consensus 333 ~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 333 ATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred ceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 899999998765211 0 1124679999998876
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=305.84 Aligned_cols=258 Identities=13% Similarity=0.146 Sum_probs=212.1
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC--cceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++ +.+.. +.+|.+.|.+++|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~~-------------------l~~h~~~V~~l~~ 61 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (753)
T ss_dssp ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCcccee-------------------ccCCcCceEEEEe
Confidence 467889999999999999999 6899999999999999844 33322 7789999999999
Q ss_pred CCC--CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc--ee
Q 001386 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RT 478 (1088)
Q Consensus 405 s~d--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~--~~ 478 (1088)
+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ .+++|+.||.|++||+.++. ..
T Consensus 62 s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 62 AHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp CCTTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCC
T ss_pred cCCCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcce
Confidence 998 99999999999999999998752 233367889999999999999 88 89999999999999998873 44
Q ss_pred EEeccCCccEEEEeeeeeC-----------CceEEEEEecCCeEEEEECCCCC----ceEEecCCCCceEEEEEccC---
Q 001386 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN--- 540 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~--- 540 (1088)
..+.+|...|.+++|++.. ++.++++|+.||.|++||+++.. ....+..|...|.+++|+|+
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 6778899999999997642 57899999999999999998774 34466788899999999999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCcee--EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 541 GRRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++++++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 219 ~~~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 219 RSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SEEEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCEEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 899999986 455999999886421 1122222234789999999999999999999999999998644
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=274.70 Aligned_cols=285 Identities=13% Similarity=0.139 Sum_probs=232.3
Q ss_pred CCeEEEEECCCCCEEE-EEeCCCEEEEEEccCC-CcccceeEeccCCCCEEEEEecC-CCCcEEEEEEeCCCcEEEEeCC
Q 001386 397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~la-s~~~dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
.....++++|+...++ +++.||.|+||++... +.......+.+|.+.|++++|+| +++ +|++|+.||+|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 4455689998776554 5788999999999654 22233445789999999999999 787 89999999999999999
Q ss_pred CC-------ceeEEeccCCccEEEEeeeeeCCc-eEEEEEecCCeEEEEECCCCCceEEe--cCCCCceEEEEEccCCCE
Q 001386 474 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 474 ~~-------~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~ 543 (1088)
++ +++..+.+|...|.+++|++ ++ .+|++++.||.|++||+++.+....+ ..+...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67889999999999999965 44 59999999999999999999888888 788899999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEE-eccccccccEEEEEEeCCCCEEEEE---eCCCcEEEEEcCCCee-eEEEeC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 618 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~ 618 (1088)
|++++. ++.|++||+++++.+..+ .+|. ...+.++.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999975 566999999999999888 6766 2348999999999999998 7999999999998765 333332
Q ss_pred CCCCCCCceEEEecCCCEEEE-EeCCCcEEEEeCCCCCc-cccccc--ccCcceeeeecCCCcceeccccCCceeecCCC
Q 001386 619 GGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 694 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~ 694 (1088)
.+...+.+++|+|+++++++ ++.||.|++|++.+++. +..+.. +...+.+++|+
T Consensus 265 -~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 -DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp -CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred -cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 22345899999999999975 45799999999998874 444444 44788888887
Q ss_pred CCCCCcccccccCccceecccc
Q 001386 695 KEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 695 ~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|++.++++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 45666654 45589999975
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-28 Score=267.02 Aligned_cols=293 Identities=10% Similarity=0.098 Sum_probs=209.6
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE-
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL- 637 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l- 637 (1088)
+|++.+...+.....|. ..|.+++|+|+|+++++|+.++ +++|++.+++.......+ .+..+++.++++.+
T Consensus 3 i~s~~~~~~~~~~~~h~---~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS---NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVA 74 (355)
T ss_dssp ----------------C---CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEE
T ss_pred cccccccCCccccccCC---CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEE
Confidence 35556666666667776 8999999999999999988775 789999988777665433 36789999988887
Q ss_pred EEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
++++.|++|++||..+++.+..+.
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-------------------------------------------------------- 98 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-------------------------------------------------------- 98 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE--------------------------------------------------------
T ss_pred EEECCccEEEEEECCCCcEEEEEE--------------------------------------------------------
Confidence 456778999999998775443222
Q ss_pred cCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCC-CCCCCCCCCCcccCCCCCCcceeeccCCCC
Q 001386 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN-DLTLSTEVPPRLYQPRHGPQFMVNDTTDSN 796 (1088)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1088)
+...|.++.++++.. ++ ..++.+++|++... .. +...
T Consensus 99 ---------------~~~~v~~v~~~~~~~--~~-~~~~~i~i~d~~~~~~~------------------~~~~------ 136 (355)
T 3vu4_A 99 ---------------VDAPVKDLFLSREFI--VV-SYGDVISVFKFGNPWKR------------------ITDD------ 136 (355)
T ss_dssp ---------------CSSCEEEEEECSSEE--EE-EETTEEEEEESSTTCCB------------------SSCC------
T ss_pred ---------------CCCceEEEEEcCCEE--EE-EEcCEEEEEECCCCcee------------------eEEe------
Confidence 233567777776642 22 34778999987654 21 1110
Q ss_pred CCCCeeEEEEecCCCEEEEE--e-CCcEEEEEcCCce----------------eEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSA--S-GGVISLYIVMTFK----------------TILTIMPPSPTATSLAFNPHDNNVIAI 857 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~--~-dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~l~~sp~d~~~las 857 (1088)
......+++++ .+++++ + +|.|++||+.+++ .+..+.+|...|++++|+| ++++||+
T Consensus 137 -~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s 212 (355)
T 3vu4_A 137 -IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVAT 212 (355)
T ss_dssp -EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred -ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEE
Confidence 01344566777 667764 3 8999999999865 2678899999999999999 8999999
Q ss_pred EeCCCe-EEEEEcCCceeeeeec-c-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec----------
Q 001386 858 GMDDST-ILIYNARSSEVISKLE-G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT---------- 924 (1088)
Q Consensus 858 g~~dg~-i~lwd~~~~~~~~~l~-~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~---------- 924 (1088)
|+.||+ |+|||+.+++++..+. + |.+.|.+++|+|||++|++++.|++|++||+..+.......+..
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 999998 9999999999999998 6 99999999999999999999999999999998754222111111
Q ss_pred --------CCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcce
Q 001386 925 --------PDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 964 (1088)
Q Consensus 925 --------~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~ 964 (1088)
.... ......++|++||++|+++ .||.+++|++..++
T Consensus 293 ~~~~~~~~~~~~---~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 293 WSLCNFKLSVDK---HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SCSEEEECCCCT---TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cceeEEEeccCC---CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 1110 1134679999999999995 78999999977544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=272.55 Aligned_cols=300 Identities=11% Similarity=0.039 Sum_probs=232.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCccccee--EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|...|.+++|+++++ ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888888999999999987654211 3458899999999999998 899999999999999999
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEE-EEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC-
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 552 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~- 552 (1088)
++.+..+..|...+.+++|++ ++..+ ++++.|+.|++||+++.+....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999954 55566 5555899999999998777666554 346899999999999998875332
Q ss_pred ---CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998776653 33 478899999999866 45689999999999999988888643 247899
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
+|+|+++++++++.+.. .....++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999888876321 01123455566666
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc-ccceEEEEcc
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 764 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~v~iw~~~ 764 (1088)
.+.+|+....+.. ..+ + ....+.+++|+|+|+.+++++. ++.+++|+++
T Consensus 382 ~v~~~d~~~~~~~--~~~--~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVK--EFW--E---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEE--EEE--E---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEE--EEe--c---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 6666665432111 111 1 2346889999999999988775 9999999864
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=250.22 Aligned_cols=270 Identities=11% Similarity=0.058 Sum_probs=200.2
Q ss_pred EEEEEeCCCcEEEEeCCCC---CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
.+++++. ..|++|+...+ +.+.+..++..+|..+.+.|.-.. ++..
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~-------- 104 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCV-------- 104 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEE--------
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeee--------
Confidence 5666665 59999999998 778888889989988888753211 1110
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecC----CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
.+ ...+...|..++++|+ ++.++.++.+ +++|.+
T Consensus 105 --------------~~-~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 105 --------------AL-GNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp --------------EE-CSSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred --------------ee-ccccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 00 0125578999999999 9988887744 556642
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEe---CCcEEEEEc-CCceeEEEecCCCCCeEEEEEcC--CCCcEEEEEeCCC
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIGMDDS 862 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp--~d~~~lasg~~dg 862 (1088)
++|+++.++. ++.|++|++ .+++.+..+..|...++.++|++ .++.+||+|+.|+
T Consensus 143 -------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~ 203 (356)
T 2w18_A 143 -------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMN 203 (356)
T ss_dssp -------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTS
T ss_pred -------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCC
Confidence 3556666653 788999999 45888888888888888888887 4578999999999
Q ss_pred eEEEEEcCCceeeeeecccc---CCeeEEEECCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeeecCCC
Q 001386 863 TILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 927 (1088)
Q Consensus 863 ~i~lwd~~~~~~~~~l~~h~---~~V~~l~~s~dg~~l------------as~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 927 (1088)
+|+|||+.+|+++.++.+|. ..+.+++|||||.++ ++|+.|++|++||..+++......+..+.+
T Consensus 204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~G 283 (356)
T 2w18_A 204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPG 283 (356)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTT
T ss_pred cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCC
Confidence 99999999999999998754 367788999999886 668899999999999977544333333455
Q ss_pred CccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCE-EEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 928 VMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPI-SQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 928 ~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v-~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|.. .+.+..+ ++.++|++ .|++|+|||+.+++++..+ .+|...+ ..++|||||++|++|+.|++|+|||+
T Consensus 284 h~~---~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 284 QAG---RFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCC---CEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred Ccc---eeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 543 2333333 48888884 6999999999999999884 4676654 46899999999999999999999995
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=301.77 Aligned_cols=254 Identities=17% Similarity=0.299 Sum_probs=214.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~v 469 (1088)
+.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .....+.+|.+.|++++|+|+ ++ ++++|+.||.|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 778999999999999999999999999999999985432 334478899999999999988 77 8999999999999
Q ss_pred EeCCCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEecCCCCceEEEEEcc------
Q 001386 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1088)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~------ 539 (1088)
||+.+++ .+..+.+|...|.+++|++..++.++++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999776447899999999999999998873 3456677888999999999
Q ss_pred -------CCCEEEEEeeCCCCceeEEEEeCCCC----ceeEEEeccccccccEEEEEEeCC---CCEEEEEeCCCcEEEE
Q 001386 540 -------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1088)
Q Consensus 540 -------~g~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 605 (1088)
++..+++++. ++.|++||+.++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 5899999986 455999999877 4556667776 89999999999 8999999999999999
Q ss_pred EcCCCeee---EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 606 DMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 606 d~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
|+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99886421 112222334568999999999999999999999999998654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-28 Score=275.03 Aligned_cols=265 Identities=15% Similarity=0.222 Sum_probs=214.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
..+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+....... .........+.+|...|.+++|+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNPN 192 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECTT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCCC
Confidence 4556899999999999985558999999999999999862110000 0000011126789999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEccCCCcc----cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeE
Q 001386 408 GS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTY 479 (1088)
Q Consensus 408 g~-~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~---~~~~ 479 (1088)
+. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||++++ +.+.
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCccee
Confidence 98 9999999999999999985432 223467799999999999995444 8999999999999999987 5778
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-CCceEEecCCCCceEEEEEccCCC-EEEEEeeCCCCceeE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFL 557 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i 557 (1088)
.+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++.|
T Consensus 272 ~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~i 346 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRRL 346 (430)
T ss_dssp EEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSCC
T ss_pred EeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCcE
Confidence 888999999999996642 23799999999999999998 455777888999999999999996 5677664 4569
Q ss_pred EEEeCCC--------------CceeEEEeccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcCCC
Q 001386 558 VEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 558 ~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 610 (1088)
++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999987 35566666666 8899999999999 8999999999999998753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=272.13 Aligned_cols=293 Identities=10% Similarity=0.071 Sum_probs=239.1
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
.+..+..+. .+.+++|+|++. ++++++.++.|++||+.+++.+.... ...+.+|...|.+++|+
T Consensus 115 ~~~~~~~~~-~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 115 FISRFKTGF-QPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISIP 178 (433)
T ss_dssp EEEEEECSS-CBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEEG
T ss_pred EEEEEcCCC-CceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEEc
Confidence 344555554 677999999665 88999999999999999998765311 11256799999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 253 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI- 253 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC-
T ss_pred CCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC-
Confidence 999999999999999999999887655 56689999999999999994 3456668999999999999998888754
Q ss_pred ccEEEEeeeeeCCceEEEEEe--------cCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 486 APVYSLCPHAKENIHFIFSIS--------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
..+.+++++ +++.++++++ .||.|++||+.+++..... .+...+.+++|+|+++.+++++. .++.|
T Consensus 254 ~~~~~~~~~--~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~v 327 (433)
T 3bws_A 254 GLPRGLLLS--KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSKI 327 (433)
T ss_dssp SEEEEEEEC--TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTEE
T ss_pred CCceEEEEc--CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCEE
Confidence 458888884 5677888887 4889999999887665544 33347889999999987766542 35679
Q ss_pred EEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC---------------CCcEEEEEcCCCeeeEEEeCCCCC
Q 001386 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------------DHVIKIWDMNKVQLLTTIDAGGGL 622 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1088)
.+||..+++.+..+.. . ..+.+++|+|+++++++++. ||.|++||+.+++.+..+..+.
T Consensus 328 ~v~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-- 401 (433)
T 3bws_A 328 EVYDLKEKKVQKSIPV-F---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-- 401 (433)
T ss_dssp EEEETTTTEEEEEEEC-S---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--
T ss_pred EEEECCCCcEEEEecC-C---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--
Confidence 9999999988887763 3 57899999999999998876 5799999999999998887643
Q ss_pred CCCceEEEecCCCEEEEEeC-CCcEEEEeCC
Q 001386 623 PENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1088)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 652 (1088)
.+.+++|+|+|++|++++. |+.|++|++.
T Consensus 402 -~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 402 -QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp -SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred -CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 4789999999999998875 9999999976
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=271.83 Aligned_cols=300 Identities=12% Similarity=0.062 Sum_probs=227.1
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCC---CCCCCCCCCcccCCCCC--------------C------------
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRND---LTLSTEVPPRLYQPRHG--------------P------------ 785 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~~~~~~~--------------~------------ 785 (1088)
.++.+++|+++|++++ ++.++.|++|++..+. .. ..|..... .
T Consensus 5 ~p~~~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFA-------GKWSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp CCCCEEEECSSSSEEE-EEETTEEEEEEEETTTEEEEE-------EEEECCC----------------------------
T ss_pred ccEEEEEecCCCCEEE-EEeCCeEEEEECCCCCcceee-------eecCCccccccccccccchhhcccccccccccccc
Confidence 4678899999999544 5568899999987765 11 01110000 0
Q ss_pred -------------cceeeccCCCCCCCCeeEEEEecCCCEE-EEEe-CCcEEEEEcC--CceeEEEec--CCCCCeEEEE
Q 001386 786 -------------QFMVNDTTDSNSQEAVPCFALSKNDAYL-FSAS-GGVISLYIVM--TFKTILTIM--PPSPTATSLA 846 (1088)
Q Consensus 786 -------------~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~~-dg~i~iwd~~--~~~~~~~~~--~~~~~i~~l~ 846 (1088)
..........+|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .|...|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE
Confidence 0000000011356689999999999996 7776 8999999999 888888876 5678999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCceeee----eeccccCCeeEEEECCC---CCEEEEEeCCCcEEEEEcCCCceeee
Q 001386 847 FNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 847 ~sp~d~~~lasg~~dg~i~lwd~~~~~~~~----~l~~h~~~V~~l~~s~d---g~~las~s~Dg~i~iwd~~~~~~~~~ 919 (1088)
|+| ++++|++|+.||.|++|++.+++... .+.+|.+.|.+++|+|+ +++|++++.|++|++||+.+++...
T Consensus 157 ~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~- 234 (450)
T 2vdu_B 157 IAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD- 234 (450)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE-
T ss_pred EcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee-
Confidence 999 89999999999999999999887554 78899999999999999 9999999999999999998865321
Q ss_pred eeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeec------------------------CCC
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------------------------ISS 974 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~------------------------~h~ 974 (1088)
....+|.. .|.+++|+ |+++|++ +.|+.|++||+.+++++..+.. .+.
T Consensus 235 ---~~~~~h~~---~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 235 ---KWLFGHKH---FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp ---EECCCCSS---CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred ---eeecCCCC---ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 11334543 79999999 9999999 5789999999999998877542 224
Q ss_pred cCEEEEEEeeCCCEEEEEe-CCCcEEEEEc--CCC---ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeC-
Q 001386 975 VPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNL---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT- 1047 (1088)
Q Consensus 975 ~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~- 1047 (1088)
..|.+++|+||+++|++++ .|+.|++|++ .++ ..+..+... -.+.+++|+| + .++++++.
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-----------~~v~~~~~~~-~-~~~v~~~~~ 374 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-----------YNVISLSAHN-D-EFQVTLDNK 374 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-----------SCEEEEEEET-T-EEEEEECCT
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-----------CceEEEEecC-C-cEEEEEecc
Confidence 5799999999999999999 8999999999 555 444444311 2357799999 4 44444432
Q ss_pred ------CCcEEEEeCCCCCCCcc
Q 001386 1048 ------NGEVYVIEPNEPGDTWA 1064 (1088)
Q Consensus 1048 ------dg~v~~w~l~~~~~~~~ 1064 (1088)
+..|.+|.+.....+|.
T Consensus 375 ~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 375 ESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp TCCSSCCCSEEEEEEETTTTEEE
T ss_pred cCCCCCCcceEEEEEEcCCCeEE
Confidence 55689999877666663
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=264.14 Aligned_cols=278 Identities=8% Similarity=0.047 Sum_probs=216.6
Q ss_pred EecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC
Q 001386 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1088)
Q Consensus 448 ~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1088)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4456677 89999999999999999999988876 456777777553 99999999999998642
Q ss_pred CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe-ccccccccEEEEEEeC--CCCEEEEEeCCCcEEE
Q 001386 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI 604 (1088)
Q Consensus 528 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~i 604 (1088)
.+.+|+..+++.++.+. +|. ..|.+++|+| +++++++++.||.|++
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 27789998888776665 444 7899999999 9999999999999999
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc-cccccccCcceeeeecCCCcceeccc
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI 683 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~ 683 (1088)
||+.+++.+.....+. ...+.+++|+|++.++++|+.||.|++||+.+++.. ..+.
T Consensus 154 wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---------------------- 210 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP---------------------- 210 (343)
T ss_dssp EESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred EECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence 9999999876664432 235899999999999999999999999998865321 0000
Q ss_pred cCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
T Consensus 211 -------------------------------------------------------------------------------- 210 (343)
T 3lrv_A 211 -------------------------------------------------------------------------------- 210 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecC---CCC
Q 001386 764 PRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP---PSP 840 (1088)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~---~~~ 840 (1088)
.+|...|.+++|+|+|.+|++++++.|++||+.+++.+..+.. |..
T Consensus 211 -------------------------------~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~ 259 (343)
T 3lrv_A 211 -------------------------------VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEF 259 (343)
T ss_dssp -------------------------------CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC---
T ss_pred -------------------------------ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccc
Confidence 0166778888888888888888877888888888776555443 333
Q ss_pred Ce--EEEEEcCCCCcEEEEEeC-CCeEEEEEcCCceeeeeeccccCCeeEEEECC---CCCEEEEEeCCCcEEEEEcCC
Q 001386 841 TA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 841 ~i--~~l~~sp~d~~~lasg~~-dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~---dg~~las~s~Dg~i~iwd~~~ 913 (1088)
.+ .+++|+| ++++|++++. |+.|+||++.++...... .++..++|++ +.+.+++++.||.+.++-...
T Consensus 260 ~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 260 KTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp --CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred cccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 33 4699999 8999999998 999999999765433322 5678889998 889999999999999886554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-27 Score=268.00 Aligned_cols=254 Identities=16% Similarity=0.312 Sum_probs=213.1
Q ss_pred eeecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEEccCC-------CcccceeEeccCCCCEEEEEecCCCCcEEEEEE
Q 001386 390 ALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~d-g~~las~~~dg~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~ 461 (1088)
....+|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEE
Confidence 346679999999999997 789999999999999999872 112344478899999999999999886 68999
Q ss_pred eCCCcEEEEeCCCCce-------eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC---CceEEecCCCCc
Q 001386 462 GDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLG 531 (1088)
Q Consensus 462 s~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~ 531 (1088)
+.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..+...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 9999999999987432 4667789999999999764 4579999999999999999987 456677788899
Q ss_pred eEEEEEccCCC-EEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcC
Q 001386 532 CTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 532 v~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~ 608 (1088)
|.+++|+|++. .+++++. ++.|++||+++ +..+..+.+|. ..|.+++|+|+++ .+++++.|+.|++||+.
T Consensus 280 v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp EEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred eEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999998 4667764 56799999997 56788888887 8999999999985 68889999999999998
Q ss_pred C--------------CeeeEEEeCCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 001386 609 K--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1088)
Q Consensus 609 ~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 654 (1088)
. .+.+..+..| ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 7 2445555444 34699999999999 9999999999999998743
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=277.44 Aligned_cols=245 Identities=13% Similarity=0.070 Sum_probs=150.6
Q ss_pred ecCCCCeEEEEEcccCcEEEEecCCCccee-----eeceeeeeeccccc-----cceeeeecCCCCCeEEEEECCCCCEE
Q 001386 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-----IRNFKVWDIGACSM-----LFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 342 ~spdg~~lla~g~~dg~i~iwd~~~~~~~~-----~~~~~~~d~~~~~~-----~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+|++..++++|. ++.|.+|+........ ...+..|+...... .........|...+....+++++.+|
T Consensus 26 ~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (393)
T 4gq1_A 26 QSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFL 104 (393)
T ss_dssp TSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEE
T ss_pred CCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEE
Confidence 3566665666664 6789999874322111 11112222111100 00111233455566666677788999
Q ss_pred EEEeCCCEEEEEEccCCCccc--ceeEeccCCCCEEEEEecC--------CCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 412 GVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~--------d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
|+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|++++.|++|+|||+.++.++..+
T Consensus 105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeeee
Confidence 999999999999999886532 2234779999999999998 777 8999999999999999999988888
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 561 (1088)
.+|..+|.+++|+|. +..+|++++.||+|++||+++.+.......+........+++ +
T Consensus 183 ~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~---------------------~ 240 (393)
T 4gq1_A 183 YPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL---------------------N 240 (393)
T ss_dssp EECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE---------------------E
T ss_pred cCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec---------------------c
Confidence 899999999999763 235899999999999999988765544332222111111111 1
Q ss_pred CCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCeeeE
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
...........+|. ..+.++.|. ++++.+++++.|+++++||+..++...
T Consensus 241 ~~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~ 291 (393)
T 4gq1_A 241 TLPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN 291 (393)
T ss_dssp SGGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred cccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence 11111111223444 678888887 899999999999999999987765433
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=268.55 Aligned_cols=272 Identities=10% Similarity=0.057 Sum_probs=213.7
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
...+.+|+. ++++|+.||+|++||+.+++.+... . ...|.+++|+|+ +++++.|+
T Consensus 41 ~~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~ 95 (343)
T 3lrv_A 41 NKSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCN 95 (343)
T ss_dssp CSSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTT
T ss_pred hhhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCC
Confidence 345567787 7999999999999999999877541 1 356778889988 99999999
Q ss_pred EEEEEEcc---------CCCcccceeEeccCCCCEEEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCceeEEecc-CCc
Q 001386 419 IVQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 486 (1088)
Q Consensus 419 ~i~vwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~ 486 (1088)
+|++|+.. +++.++. ...+|...|.+++|+| +++ ++++++.|++|++||+.+++++..... |..
T Consensus 96 ~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 171 (343)
T 3lrv_A 96 RLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDV 171 (343)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSC
T ss_pred eEEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCC
Confidence 99999766 3332221 1236778999999999 999 899999999999999999999776644 456
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce-EEecC-CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.|.+++|+ +++.+|++|+.||.|++||+++.... ..+.. |...|.+++|+|+|.+|++++. +.|++||+++
T Consensus 172 ~i~~~~~~--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~ 244 (343)
T 3lrv_A 172 EYSSGVLH--KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRK 244 (343)
T ss_dssp CCCEEEEC--TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-----SBEEEEETTS
T ss_pred ceEEEEEC--CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCC
Confidence 89999995 47789999999999999999998877 67777 8899999999999999999982 2699999999
Q ss_pred CceeEEEeccccccccE--EEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec---CCCEEE
Q 001386 565 GAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLA 638 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~ 638 (1088)
++.+..+..+..+...+ .+++|+|+++++++++. |+.|++|++.+....... ..+..++|++ +.+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMD 318 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEE
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeE
Confidence 88766655432122333 46999999999999998 999999999765543333 1356677887 888999
Q ss_pred EEeCCCcEEEEeCC
Q 001386 639 VIANENRIKILETP 652 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~ 652 (1088)
+++.||.+.++-..
T Consensus 319 ~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 319 VVCGDGGIAAILKT 332 (343)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEecCCceEEEEec
Confidence 99999999887543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-26 Score=268.36 Aligned_cols=343 Identities=9% Similarity=0.084 Sum_probs=257.3
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc--CCCeee
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 613 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 613 (1088)
+++|++..++++.. ++.|.+||..+++++.++.... .+..++|+|+|+++++++.|+.|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888877777654 5679999999999999988544 3889999999999999999999999999 889998
Q ss_pred EEEeCCCCCCCCceEEEec----CCCEEEEEeC-CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCce
Q 001386 614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 688 (1088)
..+.... ....++|+| ||+++++++. +++|.+||..+++.+..+..+...+....++
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~--------------- 277 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH--------------- 277 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence 8887533 368999999 9999999884 8999999998877665443211100000000
Q ss_pred eecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE-EEeccccceEEEEccCCC
Q 001386 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI-FALASNGVHLMWRWPRND 767 (1088)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~ 767 (1088)
....+..+.+++++..+ ++...++.|.+|++....
T Consensus 278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 12367889999977655 455668999999875432
Q ss_pred CCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecC----CCCC
Q 001386 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPT 841 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~----~~~~ 841 (1088)
. +....+ .+...+..++|+|+|++++++. +++|.+||..+++++..+.. |.+.
T Consensus 314 ~------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 314 N------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp S------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred c------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 1 111111 1345677899999999877665 78999999999999888774 5444
Q ss_pred eEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC-------ceeeeeeccccCCeeEEEECCCCCEEEEEe-------CCCcE
Q 001386 842 ATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------GDAQI 906 (1088)
Q Consensus 842 i~~l~~sp~d~~~lasg~-~dg~i~lwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~las~s-------~Dg~i 906 (1088)
...+ ++|+++.+++++. .|++|.|||+.+ +++++++.+|.+.+..++|+|||++|++++ .+++|
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 4333 5774577788776 689999999998 899999999999899999999999999987 26799
Q ss_pred EEEEcCCCcee-eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE------eCCeEEEEEcCcceeeeeee
Q 001386 907 FVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 907 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~ 970 (1088)
.+||+.+++.. ....+....+.......+.++.|+|||+.+.++ .++.|.|||..+++++..+.
T Consensus 452 ~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 452 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99999997743 111111100111112368999999999999974 25899999999999988754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-26 Score=266.17 Aligned_cols=346 Identities=11% Similarity=0.107 Sum_probs=245.3
Q ss_pred eecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeec-CCCCCeEEEEECCCCCEEEEEeCCCE
Q 001386 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1088)
Q Consensus 341 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~las~~~dg~ 419 (1088)
+|+|++. ++++++.|++|.+||..+++++.+ +. ++. +.+++|+|||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4899996 789999999999999999988765 32 333 899999999999999999999
Q ss_pred EEEEEc--cCCCcccceeEeccCCCCEEEEEecC----CCCcEEEEEEe-CCCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 420 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 420 i~vwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~----d~~~l~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+...+....
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776544 454 445689999999 999 566666 589999999999998887764321110000
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE--E
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T 570 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~ 570 (1088)
++ +...+..+.++|++..+++.. .+++.|.+||..+++.+. .
T Consensus 276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~---~~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 276 YH---------------------------------PEPRVAAIIASHEHPEFIVNV---KETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EE---------------------------------SCCCEEEEEECSSSSEEEEEE---TTTTEEEEEECTTSSSCEEEE
T ss_pred cc---------------------------------cCCceEEEEECCCCCEEEEEE---CCCCeEEEEEecCCCcceeEE
Confidence 00 112456677888777666554 235568888887765443 3
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE-EecC-CCEEEEEe-CCCcE
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI 646 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i 646 (1088)
+. +. ..+..+.|+|+|+++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus 320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 32 22 4677889999999887655 68999999999999999887532111112233 4677 66666665 57999
Q ss_pred EEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceee
Q 001386 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1088)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 726 (1088)
.+|+..+.... .. -|.
T Consensus 396 ~v~d~~~~~~~-------~~---------------------------------------------~~~------------ 411 (543)
T 1nir_A 396 SLIGTDPKNHP-------QY---------------------------------------------AWK------------ 411 (543)
T ss_dssp EEEECCTTTCT-------TT---------------------------------------------BTS------------
T ss_pred EEEEeCCCCCc-------hh---------------------------------------------cCe------------
Confidence 99998752100 00 000
Q ss_pred ecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE
Q 001386 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806 (1088)
Q Consensus 727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1088)
.+..+ + .+...+..+++
T Consensus 412 ---------~v~~l----------------------------------------------------~--~~g~~~~~v~~ 428 (543)
T 1nir_A 412 ---------KVAEL----------------------------------------------------Q--GQGGGSLFIKT 428 (543)
T ss_dssp ---------EEEEE----------------------------------------------------E--CSCSCCCCEEC
T ss_pred ---------EEEEE----------------------------------------------------E--cCCCCceEEEc
Confidence 00000 0 13334556788
Q ss_pred ecCCCEEEEEe--------CCcEEEEEcCCceeE-EEe--------cCCCCCeEEEEEcCCCCcEEEEEe-----CCCeE
Q 001386 807 SKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----DDSTI 864 (1088)
Q Consensus 807 s~dg~~l~~~~--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~d~~~lasg~-----~dg~i 864 (1088)
+||+++|+++. +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .|+.|
T Consensus 429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i 507 (543)
T 1nir_A 429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSAL 507 (543)
T ss_dssp CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEE
T ss_pred CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeE
Confidence 88888888876 568999999998877 443 35567899999999 788777663 47999
Q ss_pred EEEEcCCceeeeeecccc
Q 001386 865 LIYNARSSEVISKLEGHS 882 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~h~ 882 (1088)
.|||..+++++.+++.+.
T Consensus 508 ~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 508 VVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp EEEETTTTEEEEEECCTT
T ss_pred EEEECCCceEEEeecCCC
Confidence 999999999999988643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=269.72 Aligned_cols=276 Identities=7% Similarity=-0.024 Sum_probs=179.9
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~- 406 (1088)
.....|...+....+++++. +||+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence 34456666667777777776 79999999999999999987654211 123789999999999998
Q ss_pred -------CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 407 -------dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence 89999999999999999998876444 56689999999999999864 79999999999999999998776
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEc-cCCCEEEEEeeCCCCceeEE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~ 558 (1088)
....+.......++..... ..........+...+.++.|+ ++++.+++++. ++.++
T Consensus 224 ~~~~~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~ 280 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL 280 (393)
T ss_dssp -------CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred cccccCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence 6554433222222211111 001111223456678888886 79999999875 56699
Q ss_pred EEeCCCCceeEEEeccccccccEEEE------------------EEeC--CCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
+||+.++.....+..+. ..+..+ .++| ++.++++|+.||.|++||+.+++....+..
T Consensus 281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 99999887766665554 222222 2333 333566788999999999999988887766
Q ss_pred CCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 358 ~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 358 LGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 544 699999999999999998776 555544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=253.79 Aligned_cols=307 Identities=9% Similarity=0.033 Sum_probs=241.1
Q ss_pred CCCCceeeeecCCCCeEEEEEc----ccC----cEEEEec--CCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~----~dg----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
+...|...+|++.|..++++|+ .|| +|+|||+ .+++++.... +.+|...+..+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 123 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYA 123 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHH
Confidence 3358899999999988888886 357 8999999 9998764322 45577777777
Q ss_pred EECC--------------CCCEEEEEeCC------CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe
Q 001386 403 VWSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1088)
Q Consensus 403 ~~s~--------------dg~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s 462 (1088)
++++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++
T Consensus 124 ~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s 197 (415)
T 2hqs_A 124 GHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVT 197 (415)
T ss_dssp HHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEE
Confidence 6664 26777777654 799999998543 33 5778999999999999999 788888
Q ss_pred CCC---cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEE-EEecCCe--EEEEECCCCCceEEecCCCCceEEEE
Q 001386 463 DDK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 463 ~d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
.++ .|++||+.++++. .+..|...+.+++|+ +||+.|+ +++.++. |++||+.+++. ..+..+...+.+++
T Consensus 198 ~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS--PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPT 273 (415)
T ss_dssp CTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEE
T ss_pred ecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEc--CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceE
Confidence 775 9999999999875 566788899999995 5777777 6666655 99999987665 45666777899999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeee
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLL 613 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~ 613 (1088)
|+|||++|++++. .++...|++||..+++. ..+..+. ..+..++|+|+|++|++++.+ ..|++||+.+++..
T Consensus 274 ~spdg~~l~~~s~-~~g~~~i~~~d~~~~~~-~~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 274 WFPDSQNLAFTSD-QAGRPQVYKVNINGGAP-QRITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp ECTTSSEEEEEEC-TTSSCEEEEEETTSSCC-EECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred ECCCCCEEEEEEC-CCCCcEEEEEECCCCCE-EEEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 9999999998874 23355799999988874 3344444 678899999999999988764 58999999988764
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEeCCC---cEEEEeCCCCCcccccccccCcceeeeecCCC
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
.+..+. .+.+++|+|||++|++++.++ .|++||+. +.....+..+...|.+++|+|..
T Consensus 349 -~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 349 -VLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -ECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred -EecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 343332 588999999999999988877 79999987 55567788889999999999753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-24 Score=261.08 Aligned_cols=304 Identities=13% Similarity=0.077 Sum_probs=213.9
Q ss_pred CCCceeeeecCCCCeEEEEEcc-cC-----cEEEEecCCCcceeeeceeeee-----eccccccc-eeeeecCCCCCeEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWD-----IGACSMLF-KTALVRDPGVSVNR 401 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~d-----~~~~~~~~-~~~~~~~h~~~V~~ 401 (1088)
...|.+++|||||+ .|++++. |+ +|++||+.+++........-.. +....... ....+. ....|.+
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcce
Confidence 34799999999999 4677766 77 8999999999765432110000 00000000 000000 0134889
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCC--cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999986 899999999882 223 4667888999999999999 677776 5689999999987765
Q ss_pred EeccCCcc----------------EEEEeeeeeCCceEEEEEecCC---------------------------------e
Q 001386 480 SFEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------K 510 (1088)
Q Consensus 480 ~~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~ 510 (1088)
....+... +..++| ++||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55444433 255666 66888999988776 7
Q ss_pred EEEEECCC-CCceEEec--CCCCceEEEEEccCCCEEEEEeeC-CCCceeEEEEeCCCCceeEEEeccccc-cccEEEEE
Q 001386 511 IKAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVH 585 (1088)
Q Consensus 511 i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~ 585 (1088)
|.+||+.+ ++...... .+...+..++| |||++|+++..+ ...+..|++||..+++....+..+... ...+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 88999988 76554433 35567899999 999999987652 334678999999999887777665410 00346789
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcC-CCeeeEEEeCCCCCCCCceE-EEecCCCEEEEEe-CCC--cEEEEeCC
Q 001386 586 FDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIA-NEN--RIKILETP 652 (1088)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~-~dg--~i~iwd~~ 652 (1088)
|+|||+.+++++.+|.++||.+. +++ ...+..+ ...+..+ .|+|+++.++..+ .++ .++||++.
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 99999988889999988888775 344 5555443 2346666 5999998776554 444 78888875
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-24 Score=240.61 Aligned_cols=306 Identities=13% Similarity=0.117 Sum_probs=227.4
Q ss_pred CCCEEEEEecCCCCcEEEEEEe----CCC----cEEEEeC--CCCcee--EEeccCCccEEEEeeeee------------
Q 001386 441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 496 (1088)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~s----~d~----~i~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~------------ 496 (1088)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346778889999876 566775 467 8999999 999987 458888888877766431
Q ss_pred CCceEEEEEecC------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEE
Q 001386 497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 497 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1088)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 013456666554 7999999975 44556666778999999999999999988542 3467999999998875 4
Q ss_pred EeccccccccEEEEEEeCCCCEEE-EEeCCCc--EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC-CC--
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 644 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-- 644 (1088)
+..+. ..+.+++|+|||+.|+ +++.++. |++||+.+++. ..+..+. ..+.+++|+|||+.|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5665554 99999998876 3444332 35789999999999988876 34
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.|.+||+.+++... +
T Consensus 292 ~i~~~d~~~~~~~~-l---------------------------------------------------------------- 306 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-I---------------------------------------------------------------- 306 (415)
T ss_dssp EEEEEETTSSCCEE-C----------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-E----------------------------------------------------------------
Confidence 45555655331100 0
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1088)
. .+...+.++
T Consensus 307 --------------------------------------------------------------------~--~~~~~~~~~ 316 (415)
T 2hqs_A 307 --------------------------------------------------------------------T--WEGSQNQDA 316 (415)
T ss_dssp --------------------------------------------------------------------C--CSSSEEEEE
T ss_pred --------------------------------------------------------------------e--cCCCcccCe
Confidence 0 022345567
Q ss_pred EEecCCCEEEEEe-C---CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEEcCCceeeee
Q 001386 805 ALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISK 877 (1088)
Q Consensus 805 ~~s~dg~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~i~lwd~~~~~~~~~ 877 (1088)
+|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +.....
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~ 392 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR 392 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence 7788888777765 2 46999999988764 455454 899999999 889888888777 89999987 556788
Q ss_pred eccccCCeeEEEECCCCC
Q 001386 878 LEGHSKRVTGLVFSDALN 895 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~ 895 (1088)
+.+|.+.|.+++|+|.-.
T Consensus 393 l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 393 LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCCSSSEEEEEEECCCCC
T ss_pred eeCCCCCCcCCccccccc
Confidence 999999999999999643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-23 Score=256.03 Aligned_cols=243 Identities=9% Similarity=0.050 Sum_probs=172.1
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCC----------------eEEEEEcCCCCcEEEEEeC
Q 001386 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT----------------ATSLAFNPHDNNVIAIGMD 860 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------i~~l~~sp~d~~~lasg~~ 860 (1088)
+...+.+++|||||++|+.++++.|++||+.+++.......+... +.+++||| ||++|++++.
T Consensus 150 ~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 228 (741)
T 2ecf_A 150 GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARI 228 (741)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEE
T ss_pred CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEE
Confidence 445677888999999999888888999999888766554444332 47899999 8999998877
Q ss_pred CC---------------------------------eEEEEEcCC-ceeeeeec--cccCCeeEEEECCCCCEEEEEeC--
Q 001386 861 DS---------------------------------TILIYNARS-SEVISKLE--GHSKRVTGLVFSDALNILVSSGG-- 902 (1088)
Q Consensus 861 dg---------------------------------~i~lwd~~~-~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~-- 902 (1088)
|+ .|++||+.+ ++...... .|...+..++| |||++|++++.
T Consensus 229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~ 307 (741)
T 2ecf_A 229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR 307 (741)
T ss_dssp ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence 65 899999998 87654443 47788999999 99999997764
Q ss_pred ---CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcC-cceeeeeeecCCCcCE
Q 001386 903 ---DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVPI 977 (1088)
Q Consensus 903 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~-~~~~~~~~~~~h~~~v 977 (1088)
+..|++||+.+++......... .+.. ..+.+++|+|||++++++ .++.++||.+. ++. ... +..|...+
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~---~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~-l~~~~~~v 381 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLAHETS-PTWV---PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA-LTHGNWSV 381 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEEEEEC-SSCC---CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE-SCCSSSCE
T ss_pred cCCeEEEEEEECCCCceEEEEEcCC-CCcC---CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee-eeecceEE
Confidence 5679999999876433211111 1110 024578999999977775 56667777665 344 444 45667788
Q ss_pred EEE-EEeeCCCEEEEEe-CCC--cEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC----
Q 001386 978 SQA-TFSCDCRMVFTSF-VDG--TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN---- 1048 (1088)
Q Consensus 978 ~~l-~fs~dg~~l~s~s-~dg--~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d---- 1048 (1088)
..+ .|||||+.|++.+ .++ .+++|++.. +.....+.. . . ....++|+| ||+.|++...+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~----~-----~--~~~~~~~sp-dg~~l~~~~~~~~~p 449 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK----A-----P--GMHSASFAR-NASVYVDSWSNNSTP 449 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC----S-----C--SEEEEEECT-TSSEEEEEEEETTEE
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc----C-----C--CceEEEECC-CCCEEEEEecCCCCC
Confidence 887 5999999876544 455 899999875 543444331 0 1 124689999 78888777655
Q ss_pred CcEEEEeCCCC
Q 001386 1049 GEVYVIEPNEP 1059 (1088)
Q Consensus 1049 g~v~~w~l~~~ 1059 (1088)
+.+++|++...
T Consensus 450 ~~~~l~~~~~~ 460 (741)
T 2ecf_A 450 PQIELFRANGE 460 (741)
T ss_dssp EEEEEEETTSC
T ss_pred CeEEEEEcCCC
Confidence 47889987543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=256.67 Aligned_cols=313 Identities=9% Similarity=0.078 Sum_probs=224.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC---CeEEEEECCCCCEEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 412 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~s~dg~~la 412 (1088)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999999 5666 6789999999999986543 444554 499999999999999
Q ss_pred EEeCC---------CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 413 s~~~d---------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+++.+ +.+.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999999875 22223345656689999999999 5676664 7999999999988766655
Q ss_pred CCccE------------------EEEeeeeeCCceEEEEEecCC----------------------------------eE
Q 001386 484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 511 (1088)
Q Consensus 484 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 511 (1088)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44333 56777 56888999887653 79
Q ss_pred EEEECCCCCceEEecCC------CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccE----
Q 001386 512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 581 (1088)
Q Consensus 512 ~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 581 (1088)
++||+.+.+....+..+ ...+..++|||||+++++..........|++||+.+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999887755555543 45788999999999988776554556789999999998877665432 1223
Q ss_pred EEEEEeCCCCEEEEE--eCCC------cEEEEE-cCCCee--eEEEeCCCCCCCCce-EEEecCCCEEEEEeCC---CcE
Q 001386 582 SVVHFDTAKDQILAA--GDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 646 (1088)
Q Consensus 582 ~~~~~~~~~~~l~~~--s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 646 (1088)
..++|+|||+.|+.. ..++ .|.+|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 378999999987754 4566 567777 344441 3333321 112333 6899999999876665 789
Q ss_pred EEEeCCCCC--ccccccc---ccCcceeeeecCCCcce
Q 001386 647 KILETPESN--SVDAAGV---LSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 647 ~iwd~~~~~--~~~~~~~---~~~~v~~~~~~p~~~~~ 679 (1088)
++|++.... ....+.. +...+..++++|.+..+
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l 424 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFF 424 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEE
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEE
Confidence 999986432 2333332 45556777777654443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-23 Score=252.85 Aligned_cols=386 Identities=11% Similarity=0.066 Sum_probs=254.8
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---------Cc
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 601 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~ 601 (1088)
...+++|+|||+++++ +. ++.|++||..+++....+..+......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 32 4469999999999888887765211248999999999999998764 78
Q ss_pred EEEEEcCCCeeeEEEeCC-CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCccee
Q 001386 602 IKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
+++||+.+++. ..+... .+...+..++|||||+.|+.++. +.|++|+..+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999876 333322 22234788999999999999886 799999998765443222111100
Q ss_pred ccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc-cceE
Q 001386 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 759 (1088)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~v~ 759 (1088)
+..+.. -|-.+ ..-...+.+++|||||+.|+.++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999888764 5677
Q ss_pred EEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCC-
Q 001386 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP- 838 (1088)
Q Consensus 760 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~- 838 (1088)
+|++..... .+...+..+.++++|.. ..+..|++||+.+++....+..+
T Consensus 199 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 199 IMELPTYTG---------------------------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp EEEECCCSS---------------------------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCC
T ss_pred eEEeeccCC---------------------------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCc
Confidence 776542211 02234677888888763 22457999999998866666654
Q ss_pred -----CCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCceeeeeecc-ccCCee----EEEECCCCCEEEE--EeC
Q 001386 839 -----SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS--SGG 902 (1088)
Q Consensus 839 -----~~~i~~l~~sp~d~~~lasg~~----dg~i~lwd~~~~~~~~~l~~-h~~~V~----~l~~s~dg~~las--~s~ 902 (1088)
...+..++||| ||++|++... +..|++||+.++++...+.. |.+.+. .++|||||+.|+. ...
T Consensus 249 ~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 249 DPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp CGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred cCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 56789999999 8888877653 35899999999987766654 344443 7899999998775 456
Q ss_pred CC------cEEEEE-cCCCceeeeeeeecCCCCccCCCCeEE-EEEcCCCCEEEE-EeC---CeEEEEEcCcce--eeee
Q 001386 903 DA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT--CLKQ 968 (1088)
Q Consensus 903 Dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~fs~dg~~l~~-~~d---~~i~vwd~~~~~--~~~~ 968 (1088)
++ .|.+|| ..+++... ......++. .+.. ++|+|||+.|+. +.+ +.+++|++.... ....
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 401 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC 401 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC
T ss_pred cCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcce
Confidence 77 466677 33332000 111112222 2444 699999999987 444 679999986432 2333
Q ss_pred eecC--CCcCEEEEEEeeCCCEEEEEeCC-C--cEEEEEcCCCceEEEe
Q 001386 969 WFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 969 ~~~~--h~~~v~~l~fs~dg~~l~s~s~d-g--~v~vwd~~~~~~~~~~ 1012 (1088)
+... |...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 402 l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 402 LSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp SSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred ecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 2222 56778899999999998865432 2 3455676666554443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-21 Score=215.99 Aligned_cols=280 Identities=10% Similarity=0.056 Sum_probs=206.0
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC-CC
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 418 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~-dg 418 (1088)
..|++++.+++++++.++.|.+||+.+++.+.. ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777887899999999999999999987654 22345566 9999999997777665 88
Q ss_pred EEEEEEccCCCc-ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-C--cEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 419 IVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 419 ~i~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+ .....++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 4556666665599999999 56655544 3 8999999999988887654 445788885
Q ss_pred eeCCceEE-EEEecCCe-EEEEECCCCCceE----EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce-
Q 001386 495 AKENIHFI-FSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 567 (1088)
Q Consensus 495 ~~~~~~~l-~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~- 567 (1088)
++|+++ ++...++. |.+|+++...... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 --pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 --PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp --TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred --CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 466544 45556688 9999998655432 22234456789999999998877653 356799999999988
Q ss_pred --eEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCee--eEEEeCC----CC-CCCCceEEEecCCCEE
Q 001386 568 --KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLL 637 (1088)
Q Consensus 568 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l 637 (1088)
+..+... ..+..++|+|+|+++++++ .++.|.+||..+++. +..+... .. ......++|+|||++|
T Consensus 212 ~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 212 TLLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp EEEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred ceeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 6666643 4677899999999877665 578899999999887 4444322 11 1112458999999988
Q ss_pred EEEeC-CCcEEEEeCCCC
Q 001386 638 AVIAN-ENRIKILETPES 654 (1088)
Q Consensus 638 ~~~~~-dg~i~iwd~~~~ 654 (1088)
++++. ++.|.+||+...
T Consensus 288 ~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 288 FISANISRELKVFTISGK 305 (331)
T ss_dssp EEEETTTTEEEEEETTSC
T ss_pred EEecCCCCcEEEEEecCC
Confidence 76655 569999999864
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-21 Score=237.62 Aligned_cols=238 Identities=9% Similarity=-0.003 Sum_probs=167.0
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceeEeccCC-----------------CCEEEEEecCCCCcEEEEE
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 460 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~l~l~s 460 (1088)
+..+.|+ |+.+++++.++ | +||+.+|+.+ .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777777888 8 9999999763 32 22222 56999999999 5 3443
Q ss_pred EeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-----CCceEEecCCCCc----
Q 001386 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 531 (1088)
Q Consensus 461 ~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~---- 531 (1088)
+ .++.|++||+.+++... +..+...+.+++| ++||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 F-TQGGLVGFDMLARKVTY-LFDTNEETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp E-ETTEEEEEETTTTEEEE-EECCTTCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred E-ECCEEEEEECCCCceEE-ccCCcccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 3 36999999999887654 4446667777888 5577888884 789999999988 6655433333332
Q ss_pred ----------eEEEEEccCCCEEEEEeeCC-----------------------------CCceeEEEEeCCCCceeEEEe
Q 001386 532 ----------CTRMAYSANGRRLFSCGTSK-----------------------------EGESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 532 ----------v~~~~~s~~g~~l~~~~~~~-----------------------------~~~~~i~iwd~~~~~~~~~~~ 572 (1088)
+.+++|||||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999987321 245789999999987655443
Q ss_pred ccccccccEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeEEEe-CC--CCCCCCceEEEec--CCCEEEEEeC
Q 001386 573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AG--GGLPENPRICFNK--NGTLLAVIAN 642 (1088)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~v~~s~--~~~~l~~~~~ 642 (1088)
.. .+...+..++|+|||+++++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..
T Consensus 253 ~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GE-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CS-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CC-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 21 1236789999999999999987765 89999999984333332 11 1111246789999 9998888888
Q ss_pred CCcEEEEeCC
Q 001386 643 ENRIKILETP 652 (1088)
Q Consensus 643 dg~i~iwd~~ 652 (1088)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 8888888654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-21 Score=214.12 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=212.7
Q ss_pred CCceeeeecCCCCeEEEEEcc------cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
..+..++|+|||++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999965555433 6789999999998775422 23447789999999
Q ss_pred CEEEEE-eCCCEEEEEEccCCCcccceeEeccCCC---------CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 409 ~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++.+++...+.++.|.+||+.+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 966655 457899999999987655 3333322 278899999999532222245889999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC----CCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
..+..+...+..++| +++++++++++.++.|.+||+.+.+....+.. +...+..++|+|+|++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLAL--DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 888766666777777 55778899999999999999998887766554 3446788999999998887763 35
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 679999999999888887543 25689999999776665 68999999999999998887643 3688999999
Q ss_pred CCEEEEEeCCC
Q 001386 634 GTLLAVIANEN 644 (1088)
Q Consensus 634 ~~~l~~~~~dg 644 (1088)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99887776653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=239.29 Aligned_cols=243 Identities=11% Similarity=0.089 Sum_probs=171.3
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCC-----ceeEEEecCCCCC--------------eEEEEEcCCCCcEEEEEe-
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM- 859 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~d~~~lasg~- 859 (1088)
.+.+++|||||+.|+++.++.|++||+.+ ++.......+... +.+++||| ||++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 34556788888888887788888888887 6665544433332 48899999 899999887
Q ss_pred --------------------------------CCCeEEEEEcCCceeeeeec--cccCCeeEEEECCCCCEEEEEeCCC-
Q 001386 860 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA- 904 (1088)
Q Consensus 860 --------------------------------~dg~i~lwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~Dg- 904 (1088)
.++.|++||+.+++...... .|...+.+++|||||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 45789999999988654442 4777899999999999999988775
Q ss_pred ----cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC--CCCEEEEE-eCCeEEEEEcC-cceeeeeeecCCCcC
Q 001386 905 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP 976 (1088)
Q Consensus 905 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~--dg~~l~~~-~d~~i~vwd~~-~~~~~~~~~~~h~~~ 976 (1088)
.|++||+.+++.............. ..+..++|+| ||++++++ .++.+++|++. ++..+..+ ..|...
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~~ 356 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKGEWE 356 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCSSSC
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCCCeE
Confidence 8999999987322111111111111 1246789999 99988875 56778888876 56666554 456677
Q ss_pred EEE-EEEeeCCCEEEEEeCC-C----cEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC--
Q 001386 977 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-- 1048 (1088)
Q Consensus 977 v~~-l~fs~dg~~l~s~s~d-g----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d-- 1048 (1088)
+.. ++|+|||+.|++++.+ + .|..||+.++... .+. +. . ....++|+| ||+.+++++.+
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~~---~--~~~~~~~sp-dg~~l~~~~~~~~ 423 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------PE---S--GMHRTQLSP-DGSAIIDIFQSPT 423 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------CS---S--SEEEEEECT-TSSEEEEEEECSS
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------CC---C--ceEEEEECC-CCCEEEEEecCCC
Confidence 776 7999999988766654 3 6777787777632 221 11 1 134689999 78888877554
Q ss_pred --CcEEEEeCCCCC
Q 001386 1049 --GEVYVIEPNEPG 1060 (1088)
Q Consensus 1049 --g~v~~w~l~~~~ 1060 (1088)
+.|++|++....
T Consensus 424 ~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 424 VPRKVTVTNIGKGS 437 (706)
T ss_dssp CSCEEEEEESSSCE
T ss_pred CCcEEEEEECCCCe
Confidence 469999996654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-20 Score=207.78 Aligned_cols=276 Identities=14% Similarity=0.156 Sum_probs=193.4
Q ss_pred CCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC-CEEEEE
Q 001386 346 QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 423 (1088)
Q Consensus 346 g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d-g~i~vw 423 (1088)
+++++++++.|+.|.+||+.. ++..... ...|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 344666768899999999963 3322110 12367789999999999999998886 899999
Q ss_pred Ecc--CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEE-eCCCcEEEEeCC---CCceeEEeccCCccEEEEeeeeeC
Q 001386 424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKE 497 (1088)
Q Consensus 424 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-s~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1088)
++. +++. .....+..+. .+..++|+|+++ .++++ ..++.|.+||+. +++.+..+..+ ..+.+++| ++
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~--s~ 138 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANI--SP 138 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEE--CT
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEE--CC
Confidence 998 5542 2232344443 789999999999 45444 458899999994 34455555543 35777777 45
Q ss_pred CceEEEEEe-cCCeEEEEECCC-CCceE----Eec-CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC--CCce-
Q 001386 498 NIHFIFSIS-VDGKIKAWLYDS-LGARV----DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI- 567 (1088)
Q Consensus 498 ~~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~- 567 (1088)
+++++++++ .++.|.+||+.+ +.... ... .....+..++|+|+|+++++++. .++.|.+|++. +++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 677777777 899999999987 43321 222 23457888999999998877652 25679999995 3443
Q ss_pred -eEEEeccc---cccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcC--C--CeeeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 568 -KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 568 -~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
........ .....+..++|+|++++++++ ..++.|.+|++. + .+.+..+..+. .+..++|+|+|++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEE
Confidence 22332111 112356789999999988854 478999999998 3 34444554432 278899999999888
Q ss_pred EEe-CCCcEEEEeCC
Q 001386 639 VIA-NENRIKILETP 652 (1088)
Q Consensus 639 ~~~-~dg~i~iwd~~ 652 (1088)
+++ .++.+.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 888 57999999554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-20 Score=205.95 Aligned_cols=285 Identities=11% Similarity=0.043 Sum_probs=198.4
Q ss_pred EEecCCce-EEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--
Q 001386 741 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-- 817 (1088)
Q Consensus 741 ~~s~~g~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-- 817 (1088)
.|.+++.. +++...++.|.+||...+.. ...... +...+ .++|+|+|+++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~------------------~~~~~~----~~~~~-~~~~s~dg~~l~~~~~~ 60 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI------------------LNQITL----GYDFV-DTAITSDCSNVVVTSDF 60 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE------------------EEEEEC----CCCEE-EEEECSSSCEEEEEEST
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce------------------eeeEEc----cCCcc-eEEEcCCCCEEEEEeCC
Confidence 45555555 56667789999998654432 222221 34445 999999999777765
Q ss_pred CCcEEEEEcCCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEEcCCceeeeeeccccCCeeEEEECCC
Q 001386 818 GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLVFSDA 893 (1088)
Q Consensus 818 dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d 893 (1088)
++.|.+||..+++. ...+..+.....+++|+| ++++++++..++ .|.+||+.+++.+..+..+ ....+++|+||
T Consensus 61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spd 138 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPN 138 (331)
T ss_dssp TCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTT
T ss_pred CCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCC
Confidence 67899999999987 777776666665699999 888888655553 8999999999988887754 44689999999
Q ss_pred CCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCccee---e
Q 001386 894 LNILVSS-GGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC---L 966 (1088)
Q Consensus 894 g~~las~-s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~~---~ 966 (1088)
|++|+++ ..++. |.+|++................. ..+..++|+|||++++++ .++.|++||+.+++. +
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 214 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL 214 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence 9865544 56688 99999986432211111111111 247899999999977664 468899999999987 6
Q ss_pred eeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCce--EEEeccccccCCCCcccccc-ceEEEECCCCCCEE
Q 001386 967 KQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLKPTQF 1042 (1088)
Q Consensus 967 ~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~d~~~l 1042 (1088)
..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+... .... ..... ...++|+| |++.|
T Consensus 215 ~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~sp-dg~~l 287 (331)
T 3u4y_A 215 NAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG--LLID--PRPLFGANQMALNK-TETKL 287 (331)
T ss_dssp EEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC--CCCC--CGGGTTCCCEEECT-TSSEE
T ss_pred eecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc--cccC--CCCcccccceEECC-CCCEE
Confidence 6544 246678899999999877665 578899999999987 3332211 0000 11111 14579999 77877
Q ss_pred EEEe-CCCcEEEEeCCCCCC
Q 001386 1043 AVGL-TNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1043 ~~~~-~dg~v~~w~l~~~~~ 1061 (1088)
++++ .++.|.+|++.....
T Consensus 288 ~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 288 FISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEETTTTEEEEEETTSCEE
T ss_pred EEecCCCCcEEEEEecCCcc
Confidence 6555 566999999976553
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-20 Score=204.35 Aligned_cols=273 Identities=12% Similarity=0.130 Sum_probs=207.7
Q ss_pred cccEEEEEEecCCceEEEecc-------ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE
Q 001386 734 ANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806 (1088)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1088)
...+..++++|+|+.+++++. ++.+.+||... +........ ...+..+++
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~------------------~~~~~~~~~-----~~~~~~~~~ 96 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT------------------LEVTQAIHN-----DLKPFGATI 96 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT------------------CCEEEEEEE-----SSCCCSEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC------------------CeEEEEEec-----CCCcceEEE
Confidence 356788999999998887774 45677776543 332333222 234678999
Q ss_pred ecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCC---------eEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCce
Q 001386 807 SKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPT---------ATSLAFNPHDNNVIAIGM--DDSTILIYNARSSE 873 (1088)
Q Consensus 807 s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~---------i~~l~~sp~d~~~lasg~--~dg~i~lwd~~~~~ 873 (1088)
+|+|++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||..+++
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTE
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCc
Confidence 99999776665 689999999999988887765432 78899999 777666665 47899999999999
Q ss_pred eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--e
Q 001386 874 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 951 (1088)
Q Consensus 874 ~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~ 951 (1088)
.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++........ ..++. ..+..++|+|||++++++ .
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~---~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGKE---HFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSSC---CCEEEEEEETTTTEEEEEESS
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCCC---cccceEEECCCCCEEEEEeCC
Confidence 99888866667899999999999999999999999999987643322211 11111 257889999999988774 3
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCceEEEeccccccCCCCccccccce
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1030 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1088)
++.|.+||..+++.+..+..++ ...++|+|||++++++. .++.|.+||+.+++.+..+... ..+.
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-----------~~~~ 317 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-----------THPN 317 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-----------SEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-----------CCCC
Confidence 4799999999999887765443 25689999999776665 6899999999999988776521 2457
Q ss_pred EEEECCCCCCEEEEEeCCC
Q 001386 1031 AIAAHPLKPTQFAVGLTNG 1049 (1088)
Q Consensus 1031 ~~~~~p~d~~~l~~~~~dg 1049 (1088)
.++|+| ||+.|+++..++
T Consensus 318 ~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEECT-TSCEEEEEEECC
T ss_pred eEEEcC-CCCEEEEEEccc
Confidence 799999 788777776664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-20 Score=206.69 Aligned_cols=281 Identities=13% Similarity=0.088 Sum_probs=205.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE-EEeCCCcEEEEeCCCCCcccccccccCccee
Q 001386 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1088)
+++++++.++.|++||..+++.+..+........+..++|+|+|+.++ ++..++.|.+||..+++....+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~------ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS------ 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC------
Confidence 478889999999999999999998887543110267899999997665 4555789999998765433211100
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1088)
..+
T Consensus 76 --------------------------------------------------------------------------~~~--- 78 (337)
T 1pby_B 76 --------------------------------------------------------------------------TPE--- 78 (337)
T ss_dssp --------------------------------------------------------------------------BTT---
T ss_pred --------------------------------------------------------------------------Ccc---
Confidence 000
Q ss_pred EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE-------------
Q 001386 750 FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA------------- 816 (1088)
Q Consensus 750 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------------- 816 (1088)
.+...+.+++++|+|++++++
T Consensus 79 ----------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 79 ----------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp ----------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ----------------------------------------------cccccccceEECCCCCEEEEEecccccccccccc
Confidence 000112345666666666655
Q ss_pred eCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCE
Q 001386 817 SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 896 (1088)
Q Consensus 817 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 896 (1088)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+... ..+.|+|||+.
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~ 187 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLA 187 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCC
T ss_pred cCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccE
Confidence 358899999999988877764 45678899999 78878777 689999999999988777654411 12378999987
Q ss_pred EEEEeCCC------------------------cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC
Q 001386 897 LVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952 (1088)
Q Consensus 897 las~s~Dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d 952 (1088)
|+..+.++ .|.+||+.+++.. ...+.. +. ..+.+++|+|||++++++ +
T Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~~---~~~~~~~~s~dg~~l~~~-~ 259 (337)
T 1pby_B 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---MD---VFYFSTAVNPAKTRAFGA-Y 259 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---CS---SCEEEEEECTTSSEEEEE-E
T ss_pred EeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---CC---CceeeEEECCCCCEEEEe-C
Confidence 76554332 4689999987654 111111 11 247789999999999988 7
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
+.|++||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||+.+++.+..+...
T Consensus 260 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 9999999999988876543 346789999999999999999999999999999998887643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-20 Score=204.66 Aligned_cols=275 Identities=11% Similarity=0.120 Sum_probs=190.3
Q ss_pred EEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-C-CcEEEEEc
Q 001386 749 IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G-GVISLYIV 826 (1088)
Q Consensus 749 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d-g~i~iwd~ 826 (1088)
+++.+.++.|++|++.... ........ .+...+.+++|+|+|+++++++ + +.|.+|++
T Consensus 8 ~~~~~~~~~v~~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEG-----------------ALTLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEGGGTEEEEEEECTTS-----------------CEEEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCCeEEEEEECCCC-----------------cEEEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence 3444779999999975311 10011111 2556788899999999888887 3 89999999
Q ss_pred C--Cce--eEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEc---CCceeeeeeccccCCeeEEEECCCCCEEE
Q 001386 827 M--TFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNA---RSSEVISKLEGHSKRVTGLVFSDALNILV 898 (1088)
Q Consensus 827 ~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~i~lwd~---~~~~~~~~l~~h~~~V~~l~~s~dg~~la 898 (1088)
. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+ .+++.+..+..+. .+.+++|+|||++|+
T Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 68 APDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLW 144 (343)
T ss_dssp CTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEE
T ss_pred cCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEE
Confidence 7 544 344555444 788999999 788776655 4889999999 4455556665444 588999999999888
Q ss_pred EEe-CCCcEEEEEcCC-Cceeeee--eeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCc--cee--eee
Q 001386 899 SSG-GDAQIFVWDVDG-WGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEE--LTC--LKQ 968 (1088)
Q Consensus 899 s~s-~Dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~--~~~--~~~ 968 (1088)
+++ .++.|++||+.+ ++..... ......+ ..+..++|+|||++++++ .++.|.+|++.. ++. ...
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred EecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 887 899999999987 5433222 2222222 257889999999988763 578999999953 432 212
Q ss_pred ee---cCC--CcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcC--CC--ceEEEeccccccCCCCccccccceEEEECCCC
Q 001386 969 WF---PIS--SVPISQATFSCDCRMVFTSF-VDGTLSIHEAS--NL--EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1038 (1088)
Q Consensus 969 ~~---~~h--~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d 1038 (1088)
.. .++ ...+..++|+|||++|+++. .++.|.+|++. ++ +.+..+... ..+..++|+| |
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~s~-d 287 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-----------TQPRGFNVDH-S 287 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-----------SSCCCEEECT-T
T ss_pred ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-----------CccceEEECC-C
Confidence 11 111 34677899999999887554 78999999998 33 333333211 1145689999 7
Q ss_pred CCEEEEEe-CCCcEEEEeCCCCCCCc
Q 001386 1039 PTQFAVGL-TNGEVYVIEPNEPGDTW 1063 (1088)
Q Consensus 1039 ~~~l~~~~-~dg~v~~w~l~~~~~~~ 1063 (1088)
++.|++++ .|+.|.+|++.....++
T Consensus 288 g~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 288 GKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CCEEEEecCCCCeEEEEEEcCCCcee
Confidence 88888887 68999999776544444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.6e-21 Score=205.13 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=188.0
Q ss_pred EEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccC-CCc
Q 001386 352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 430 (1088)
Q Consensus 352 ~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~-~~~ 430 (1088)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44578999999999887553 334788999999999999999986 78999999998 765
Q ss_pred ccceeEeccC-CCCEEEEEecCCCCcEEEEEEe--CCCcEEEE--eCCCCceeEEeccCCccEEEEeeeeeCCceEEE-E
Q 001386 431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 504 (1088)
Q Consensus 431 ~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~s--~d~~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s 504 (1088)
.. ....| ...+.+++|+||++ .+++++ .++...|| |+.+++ ...+..+. .+..++|+ ++++.++ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~s--pdg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWS--PDGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEEC--TTSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEEC--CCCCEEEEE
Confidence 43 23344 46789999999999 677777 33455555 445554 44554443 47778884 4666666 7
Q ss_pred EecCCeEEEEECCCC-CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCceeEEEeccccccccEE
Q 001386 505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 582 (1088)
Q Consensus 505 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 582 (1088)
++.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++.. ++.+.+|+.. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3445556667789999999999998877631 2346666654 444556666655 6789
Q ss_pred EEEEeCCCCEEEEEeCC-----------CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 583 ~~~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+++.|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999988765 569999999887644443222233588899999999998887653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=206.18 Aligned_cols=278 Identities=10% Similarity=0.059 Sum_probs=206.1
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC-CeEEEEECCCCCEEEE-EeCCCEEEEEEcc
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH 426 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-~V~~l~~s~dg~~las-~~~dg~i~vwd~~ 426 (1088)
++++++.+++|.+||+.+++.+.... .++.. .+..++|+|||+++++ ++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 68889999999999999998765421 12222 4788999999987654 4567899999999
Q ss_pred CCCcccceeEecc---CCCCEEEEEecCCCCcEEEEEEe------------CCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 427 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~s------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
+++.+..+ .... |...+..++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98765432 1111 123577899999999 555554 579999999999988877764 4456677
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc-----------------
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE----------------- 554 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~----------------- 554 (1088)
+| ++++++++++ ++.|.+||+.+.+....+...... ..+.|+|+|+.++..+... +.
T Consensus 141 ~~--s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AW--ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADP 214 (337)
T ss_dssp EE--CTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSG
T ss_pred EE--CCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCC-Cceeeeeeccccccccccc
Confidence 77 5577777777 689999999988776655544311 1237899998776554211 11
Q ss_pred ----eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 555 ----SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 555 ----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
..|.+||..+++.. .+.... +...+..++|+|++++++++ ++.|.+||+.+++.+..+.... .+.+++|
T Consensus 215 ~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 287 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV 287 (337)
T ss_dssp GGEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred cccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence 14799999998875 322211 22568889999999999988 7999999999999888887543 3689999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
+|+|+++++++.++.|.+||+.+++.+..+.
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9999999999999999999999887766554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=234.05 Aligned_cols=378 Identities=12% Similarity=0.038 Sum_probs=244.3
Q ss_pred EEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC---------CCcEEE
Q 001386 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 604 (1088)
Q Consensus 534 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~i 604 (1088)
+++|+|||++++++ . ++.|++||..+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 57899999655543 2 456999999999988777765511114889999999999998876 789999
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceecccc
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 684 (1088)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.+++..........
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------------- 151 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------------- 151 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence 999998873111111 2478899999999999986 67999999987754332110000
Q ss_pred CCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc-cceEEEEc
Q 001386 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 763 (1088)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~v~iw~~ 763 (1088)
..+..|..+ .++.- .-.....+++|||||+.|+.++.+ +.+.+|.+
T Consensus 152 --------------~~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 152 --------------NKIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp --------------TTEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred --------------CCeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 000000000 00000 000122478999999999988765 55566654
Q ss_pred cCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeE---E-----Ee
Q 001386 764 PRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI---L-----TI 835 (1088)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~---~-----~~ 835 (1088)
..... .+...+..+.+.+.|.. .....|++||+.+++.. . .+
T Consensus 199 ~~~~~---------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 199 SYYGD---------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp EECCS---------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred eccCC---------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccCCccC
Confidence 32110 12223445555544431 11347999999988753 1 23
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEE----cCCceeeeee----ccccCCee-----EEEECCCCCEEE
Q 001386 836 MPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDALNILV 898 (1088)
Q Consensus 836 ~~~~~~i~~l~~sp~d~~~lasg~~d----g~i~lwd----~~~~~~~~~l----~~h~~~V~-----~l~~s~dg~~la 898 (1088)
.+|...+..++||| |++++++.... ..|++|| +.++++...+ .+|.+.+. .++|||||+.|+
T Consensus 249 ~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 249 ASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 35777899999999 68887775433 2589999 8888876666 46777777 899999999665
Q ss_pred E--EeCCC--cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeC-----CeEEEEEcCc--cee-
Q 001386 899 S--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE--LTC- 965 (1088)
Q Consensus 899 s--~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d-----~~i~vwd~~~--~~~- 965 (1088)
. ...+| .|.+||+.+++. ..+ ..+. ..+..+.++ |++.|+. +.+ +..++|.+.. +..
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~~---~~l--t~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVENA---IQI--TSGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS 397 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTTC---EEC--SCSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC
T ss_pred EEEEccCCceEEEEEECCCCce---Eec--ccCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC
Confidence 4 44555 566777766541 111 1121 146777888 8888877 443 6788887753 421
Q ss_pred eeee---ecCCCcCEEEEEEeeCCCEEEEE-eCC--CcEEEEEcCCCceEEEec
Q 001386 966 LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 966 ~~~~---~~~h~~~v~~l~fs~dg~~l~s~-s~d--g~v~vwd~~~~~~~~~~~ 1013 (1088)
...+ ..+|...+..+.||+||++++.. +.+ ..+.+||+.+++....+.
T Consensus 398 ~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 398 KKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 1221 12366778899999999887754 333 468899999998655444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=220.03 Aligned_cols=272 Identities=12% Similarity=0.073 Sum_probs=197.5
Q ss_pred CCCceeeeecCCCCeEEEEEcc-cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC-CCeEEEEECCCCCEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 411 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l 411 (1088)
..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 448999999999995 566555 9999999997766443 33344 68999999999 777
Q ss_pred EEEeC---CCEEEEEEccC--CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 412 as~~~---dg~i~vwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
++++. +....+|.+.. ..... .+..+. .+...+|+||++.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 44566666544 22112 232222 34467899999875666666555 5599999987665554333
Q ss_pred cEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
.+++| ++||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 56666 4577899988877 78999999887765 55667778899999999999995433 34458999999
Q ss_pred CCCceeEEEeccccccccEEEEE--------EeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
.+++.. .+.++. ..+..+. |+|||..+++++.++.+++|++ |+..... . ..+.+++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~---~--~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP---Q--GNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC---S--SEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC---C--CceEEEEec-CC
Confidence 999887 666655 4455555 9999988888999999999999 6655421 1 347789999 99
Q ss_pred CEEEEEeCCCc---EEEEeCC
Q 001386 635 TLLAVIANENR---IKILETP 652 (1088)
Q Consensus 635 ~~l~~~~~dg~---i~iwd~~ 652 (1088)
+++++++.+.+ +.+|+..
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTC
T ss_pred EEEEEEcCCCCCCeEEEEcCC
Confidence 99988887744 5666654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=193.96 Aligned_cols=248 Identities=12% Similarity=0.154 Sum_probs=170.8
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCcEEEEEcCCce--eEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcC
Q 001386 797 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 870 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~i~lwd~~ 870 (1088)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999998765 4445455677889999999 888888777 78999999996
Q ss_pred -Cc--eeeeeecc---------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCccCCCCeEE
Q 001386 871 -SS--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 937 (1088)
Q Consensus 871 -~~--~~~~~l~~---------h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 937 (1088)
++ +.+..+.. +...+.+++|+|||+++++...++.|++|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333321 12348899999999966666678899999998 444332222222222 24678
Q ss_pred EEEcCCCCEEEEE--eCCeEEEEEcCc--ceeeee-eecCCC------cCEEEEEEeeCCCEEE-EEeCCCcEEEEEcCC
Q 001386 938 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPISS------VPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1005 (1088)
Q Consensus 938 ~~fs~dg~~l~~~--~d~~i~vwd~~~--~~~~~~-~~~~h~------~~v~~l~fs~dg~~l~-s~s~dg~v~vwd~~~ 1005 (1088)
++|+|||++++++ .++.+.+|++.. ++.... ...... ..+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 467899999874 543211 111111 4588999999999874 555689999999973
Q ss_pred C---ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC-CcEEEEeCCCCCC
Q 001386 1006 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGD 1061 (1088)
Q Consensus 1006 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d-g~v~~w~l~~~~~ 1061 (1088)
. ..+..+... ...+..++|+| ||+.|++++.+ +.|.+|++....+
T Consensus 272 ~g~~~~~~~~~~~----------~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 272 DGHLTLIQQISTE----------GDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp GGCEEEEEEEECS----------SSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCcEEEeEEEecC----------CCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 3 223222210 12356799999 88888877765 8999997754433
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=227.88 Aligned_cols=278 Identities=14% Similarity=0.081 Sum_probs=195.2
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC---CeEEEEECCCCCEEEEE
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~s~dg~~las~ 414 (1088)
..++|+|||+ +++++ .|++|++||+.+++.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 4789999996 66665 589999999999986543 222322 48899999999999998
Q ss_pred eC---------CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccC
Q 001386 415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 484 (1088)
Q Consensus 415 ~~---------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~ 484 (1088)
+. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. ++.|++||+.+++..... .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998752101 12 24688999999999 566665 789999999988775432 233
Q ss_pred CccE-----------------EEEeeeeeCCceEEEEEecCC----------------------------------eEEE
Q 001386 485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 513 (1088)
Q Consensus 485 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~i 513 (1088)
...| .+++| ++||+.|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 3322 35666 66888999988663 7889
Q ss_pred EECCCCCce--EE------ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe----CCCCceeEEE----eccccc
Q 001386 514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 577 (1088)
Q Consensus 514 wd~~~~~~~--~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 577 (1088)
||+.+++.. .. +..+...+..++||||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876642 11 2346667899999999887776544344456799999 8887765444 2443
Q ss_pred cccEE-----EEEEeCCCCEEEE--EeCCC--cEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC-----
Q 001386 578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 643 (1088)
Q Consensus 578 ~~~v~-----~~~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 643 (1088)
..+. .+.|+|||+.++. ...+| .|.+||+.+++ ...+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7889999997655 33455 57777877766 3344322 2235667777 78777776654
Q ss_pred CcEEEEeCC
Q 001386 644 NRIKILETP 652 (1088)
Q Consensus 644 g~i~iwd~~ 652 (1088)
+..++|.+.
T Consensus 382 ~~~~l~~~~ 390 (719)
T 1z68_A 382 GRRNIYRIS 390 (719)
T ss_dssp TCBEEEEEE
T ss_pred ceEEEEEEe
Confidence 777888765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=196.34 Aligned_cols=245 Identities=11% Similarity=0.074 Sum_probs=181.5
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCC-CCCeEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNR 401 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~ 401 (1088)
......+..|...|.+++|||||+ +|++++ ++.|.+||+.+ ++.... ..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccc
Confidence 334455677888999999999999 566665 78999999998 765532 3334 478899
Q ss_pred EEECCCCCEEEEEe--CCCEEEEE--EccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCc
Q 001386 402 VVWSPDGSLLGVAY--SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGS 476 (1088)
Q Consensus 402 l~~s~dg~~las~~--~dg~i~vw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~-~~~ 476 (1088)
++|+|||++|++++ .++...|| +..+++ .. .+..+. .+..++|+||++. ++++++.|+.+++|++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 33445555 545543 22 343343 5899999999994 34478889999999864 233
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEe-cCCeEEEEECC-CCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC--
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-- 552 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~-- 552 (1088)
....+..+...+.+++|+ +++..++.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYS--PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEECCCSSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cceEcccCCCccccceEC--CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 446677788889999985 4667777665 58999999987 44556666667778899999999999998876432
Q ss_pred -----CceeEEEEeCCCCceeEEE--eccccccccEEEEEEeCCCCEEEEEeCCC
Q 001386 553 -----GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1088)
Q Consensus 553 -----~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1088)
....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 2467999999988764433 3555 6788899999999999877653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-19 Score=201.61 Aligned_cols=308 Identities=10% Similarity=0.020 Sum_probs=203.8
Q ss_pred ccCCCchhheeecccCCCCcee-----eeecCCCCeEEEEEcccC--cEEEEecCCCcceeeeceeeeeeccccccceee
Q 001386 318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1088)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1088)
+++......+..|..|...+.. .+|||||+++++++..++ .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 3444445667778888766665 899999996555544467 488889988876542
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEE--ecCCCCcEEEEE--------
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT-------- 460 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s-------- 460 (1088)
..++...+..++|||||++|++++.++.|++||+.+++... .+..+...+.... +++|++ .++.
T Consensus 76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~ 149 (388)
T 3pe7_A 76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW 149 (388)
T ss_dssp -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence 34455556578899999999999999999999999987543 2334555454443 489998 4543
Q ss_pred --------------EeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC-CceEEEEEecC------CeEEEEECCCC
Q 001386 461 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE-NIHFIFSISVD------GKIKAWLYDSL 519 (1088)
Q Consensus 461 --------------~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~ 519 (1088)
.+.+..|.+||+.+++.. .+..+...+..+.| ++ +|..|+....+ ..|.++|....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIY--RPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEE--ETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEE--CCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 224578999999998754 44456677888888 45 66777777653 36788887665
Q ss_pred CceEEecCCC-CceEEEEEccCCCEEEEEeeCC-CCceeEEEEeCCCCceeEE--EeccccccccEEEEEEeCCCCEEEE
Q 001386 520 GARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 520 ~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
.......... ..+..++|+|||+.|+..+... .....|++||+.+++.... +.++...........|+|||+.++.
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 5443333222 2577889999999887765432 2234599999999875332 2221100000112369999998886
Q ss_pred E---------eCCCcEEEEEcCCCeeeEEEeCCCCCC--------CCceEEEecCCCEEEEEeC-CCcEEEEeCC
Q 001386 596 A---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1088)
Q Consensus 596 ~---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 652 (1088)
. ..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ----------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 4 456789999999887644433322110 3678899999998887764 6666666543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-19 Score=195.01 Aligned_cols=279 Identities=12% Similarity=0.103 Sum_probs=184.9
Q ss_pred cCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc---ccceEEEEccCCCCCCCCCCCCcccCCC
Q 001386 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEVPPRLYQPR 782 (1088)
Q Consensus 706 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 782 (1088)
.++.+.+|.++.... ....+.. ..+...+..++|+|+|+ +++++. ++.|.+|++..+..
T Consensus 14 ~~~~i~v~~~d~~tg-~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------- 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK-TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------- 75 (347)
T ss_dssp SCCEEEEEEEETTTT-EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--------------
T ss_pred CCCCEEEEEEcCCCC-eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--------------
Confidence 356677887664221 1111111 12345667899999999 665554 68999998754321
Q ss_pred CCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcC---CceeEEEecCC---------CCCeEEEEEc
Q 001386 783 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM---TFKTILTIMPP---------SPTATSLAFN 848 (1088)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~---~~~~~~~~~~~---------~~~i~~l~~s 848 (1088)
....... .+...+..++|+|||++|++++ ++.|.+|++. ..+.+..+... ...+.+++|+
T Consensus 76 ----~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 76 ----HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT 149 (347)
T ss_dssp ----EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred ----EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence 0111101 1456788999999999888886 6889999996 23333333321 2348899999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcC-Cceee--eeeccc-cCCeeEEEECCCCCEEEE-EeCCCcEEEEEcCC--Cceeeeee
Q 001386 849 PHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQTCRS 921 (1088)
Q Consensus 849 p~d~~~lasg~~dg~i~lwd~~-~~~~~--~~l~~h-~~~V~~l~~s~dg~~las-~s~Dg~i~iwd~~~--~~~~~~~~ 921 (1088)
| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++......
T Consensus 150 p-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 150 P-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI 228 (347)
T ss_dssp T-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred C-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence 9 77777777778999999998 55433 222322 236788999999997665 45688999999985 44332223
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEE-E-eCCeEEEEEcCc-c--eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTSFVD- 995 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~-~d~~i~vwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d- 995 (1088)
+............+..++|+|||++|++ . .++.|.+|++.. + +.+.. ...+...+..++|+|||++|++++.+
T Consensus 229 ~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 229 VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 3322221111124789999999998865 3 478999999973 2 33333 33456678899999999999888765
Q ss_pred CcEEEE--EcCCCceEE
Q 001386 996 GTLSIH--EASNLEVQC 1010 (1088)
Q Consensus 996 g~v~vw--d~~~~~~~~ 1010 (1088)
+.|.+| |..+|++..
T Consensus 308 ~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 308 DNATLYARDLTSGKLSL 324 (347)
T ss_dssp TEEEEEEECTTTCCEEE
T ss_pred CcEEEEEEeCCCCeEEe
Confidence 899999 556777653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-19 Score=214.91 Aligned_cols=279 Identities=14% Similarity=0.123 Sum_probs=188.0
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC-----CeEEEEECCCCC
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~V~~l~~s~dg~ 409 (1088)
.....++|+|||+ +++++ |++|++||+.+|+.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 67776 89999999999986543 334432 334589999999
Q ss_pred EEEEEeCC---------CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 410 ~las~~~d---------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
+|++++.+ +.+.+||+.+++... +..|...+...+|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 567799999987543 667888999999999999 466554 78999999998875532
Q ss_pred -eccCCccEE-----------------EEeeeeeCCceEEEEEecCCe-EEEEECCCCCceEEecCCCCceEEEEEccCC
Q 001386 481 -FEGHGAPVY-----------------SLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 481 -~~~~~~~v~-----------------~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 541 (1088)
..++...+. .+.| ++||+.|+.++.|.. +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 223333232 2555 678899998877655 8888763221100 123355667777776
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC---Cc--eeEEEeccc---cccccEEEEEEeCCCCEEEEEeC----CCcEEEEEcCC
Q 001386 542 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGD----DHVIKIWDMNK 609 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~----dg~i~iwd~~~ 609 (1088)
... ....|++||+.+ ++ ....+.... .+...+..++|+|||+.++.... +..|.+||+.+
T Consensus 223 ~~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AVN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SCC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CcC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 432 234599999998 73 222333210 12367899999999997666432 34799999998
Q ss_pred Ce----ee--EEE--eCCCCCCC---CceEEEecCCCEEE-EEeC-C--CcEEEEeCCCCC
Q 001386 610 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 655 (1088)
Q Consensus 610 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iwd~~~~~ 655 (1088)
++ +. ..+ ..+..... ....+|+|||+.++ ..+. + ..|.+|+..++.
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 87 21 111 22222111 23789999999887 6654 3 457777776543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-17 Score=185.12 Aligned_cols=311 Identities=11% Similarity=0.115 Sum_probs=196.9
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeC--CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC----CcEEEEEcCC--
Q 001386 538 SANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK-- 609 (1088)
Q Consensus 538 s~~g~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~-- 609 (1088)
.+...++++++.....+..|++|.+ .+++.......+. ..+..++|+|++++|++++.+ +.|.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence 3444566666654434555777654 5666544333333 667889999999999998875 7999998865
Q ss_pred Ceee--EEEeCCCCCCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCC
Q 001386 610 VQLL--TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 610 ~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
++.. .....+. .....+++ +++++++++ .++.+.+|++.....+.....
T Consensus 87 g~~~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------ 138 (361)
T 3scy_A 87 GTLHLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------ 138 (361)
T ss_dssp TEEEEEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE------------------------
T ss_pred CcEEEeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce------------------------
Confidence 4432 2333222 23455666 788777776 578999999874422211100
Q ss_pred ceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCC
Q 001386 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1088)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 766 (1088)
.+.....+.
T Consensus 139 ----------------------------------------------------~~~~~g~~~------------------- 147 (361)
T 3scy_A 139 ----------------------------------------------------VIEFKGSGP------------------- 147 (361)
T ss_dssp ----------------------------------------------------EEECCCCCS-------------------
T ss_pred ----------------------------------------------------eEEccCCCC-------------------
Confidence 000000000
Q ss_pred CCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCce-------e------
Q 001386 767 DLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T------ 831 (1088)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~-------~------ 831 (1088)
.+...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 148 -------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 148 -------------------------DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp -------------------------CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred -------------------------CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 00001334467788888888776665 6778888876433 1
Q ss_pred EEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCcee--eeee---ccccCCeeEEEECCCCCEEEEEeCC--
Q 001386 832 ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD-- 903 (1088)
Q Consensus 832 ~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~i~lwd~~~~~~--~~~l---~~h~~~V~~l~~s~dg~~las~s~D-- 903 (1088)
......+...+..++|+| |++++++++ .++.|.+|++.+++. +..+ ..+...+..++|+|||++|+++..+
T Consensus 203 ~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred cceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 112233456678999999 888777776 689999999988754 2323 3344557899999999998776654
Q ss_pred CcEEEEEcC--CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEE--EcCcceeeeeeecCCCcCE
Q 001386 904 AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIY--EAEELTCLKQWFPISSVPI 977 (1088)
Q Consensus 904 g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vw--d~~~~~~~~~~~~~h~~~v 977 (1088)
+.|.+|+++ +++......+.. + ..+.+++|+|||++|+++ .++.|.+| |..+|+........+...+
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p 354 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKP 354 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSE
T ss_pred CEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCC
Confidence 899999996 344322222222 1 246799999999999885 35789996 5557776544323345678
Q ss_pred EEEEEe
Q 001386 978 SQATFS 983 (1088)
Q Consensus 978 ~~l~fs 983 (1088)
.|++|.
T Consensus 355 ~~v~~~ 360 (361)
T 3scy_A 355 VCLKFV 360 (361)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 899886
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=197.33 Aligned_cols=312 Identities=13% Similarity=0.110 Sum_probs=200.6
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCC-CCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS-TEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 813 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1088)
..+..+++++++..+++++.++ +++|+......... ......+.... .... + .+...|.+++|+|+|++|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~---~~~~~v~~l~~spdg~~l 107 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV---QGLL--V---PMKFPIHHLALSCDNLTL 107 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC---CCEE--E---CCSSCEEEEEECTTSCEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC---cccc--c---cCCCcccEEEEcCCCCEE
Confidence 4578899999999999988887 88887542211000 00000000000 0000 1 256689999999999999
Q ss_pred E----EEe-CCcEEEEEcCCc--------e---eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 814 F----SAS-GGVISLYIVMTF--------K---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 814 ~----~~~-dg~i~iwd~~~~--------~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
+ +++ |+.|++||+.++ + .+..+.+|...|.+++|+|+++.+|++++.||+|++||++++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 9 555 789999998765 1 24556678999999999995489999999999999999999987777
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CccCCCCeEEEEEcCCCCEEEEE--eCC-
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQFHKDQTRFLLV--HET- 953 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~fs~dg~~l~~~--~d~- 953 (1088)
..+|...|.+++|+|+|++|++++.||+|++||+. ++... .+..... .......+.+++|++++.++++. .+|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 77899999999999999999999999999999998 33221 1211111 00011268999999999998773 332
Q ss_pred -----eEEEEEcCccee----e-eeeec------CCCcCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCC--ceEEEec-
Q 001386 954 -----HLAIYEAEELTC----L-KQWFP------ISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNL--EVQCRIL- 1013 (1088)
Q Consensus 954 -----~i~vwd~~~~~~----~-~~~~~------~h~~~v~~l~fs~dg~~l~s~s~-dg~v~vwd~~~~--~~~~~~~- 1013 (1088)
.+++|++...+. . ..+.. +...+-..+.+-+|.+++++++. .+.|.|...... .......
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~ 344 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLE 344 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEEC
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecc
Confidence 389999986521 1 11110 11222223344478888776665 445666664332 1111111
Q ss_pred --cccccCCCCccccccceEEEE--CCCC------------CCEEEEEeCCCcEEEEeCCC
Q 001386 1014 --STAYLRPTTSCLHVYPHAIAA--HPLK------------PTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1014 --~~~~~~~~~~~~~~~~~~~~~--~p~d------------~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
....+|-...+...+++.+++ +..+ --.|.+-+.||.+..|.+-.
T Consensus 345 d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 345 DSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp GGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 111222222234455544443 2211 13677888999999999865
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=197.48 Aligned_cols=262 Identities=12% Similarity=0.051 Sum_probs=178.2
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE--
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-- 412 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la-- 412 (1088)
..+..+++++++. ++++|+.++ ++||+........... .+.. ....+.......|...|.+++|+|||++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 678888777 8998864321100000 0000 000001111224677899999999999999
Q ss_pred --EEeCCCEEEEEEccCC--------CcccceeEeccCCCCEEEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 413 --VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 413 --s~~~dg~i~vwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. ++++++.||+|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999999865 222334456789999999999998 55 8999999999999999999877777
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-------CCceEEEEEccCCCEEEEEeeCC---
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK--- 551 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~--- 551 (1088)
.+|...|.+++|++ +|.+|++|+.||.|++||++ ......+..+ ...+.+++|++++.++++.....
T Consensus 189 ~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 78999999999954 67899999999999999998 4444444332 22789999999998887655321
Q ss_pred CCceeEEEEeCCCCc-----eeEEEecc----ccccccEEEEEEeCCCCEEEEEeC-CCcEEEEEc
Q 001386 552 EGESFLVEWNESEGA-----IKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDM 607 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~-----~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~ 607 (1088)
+....+++|++.... ....+... ...+.+...+.+-++.+.+++++. .+.|.+...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348899987542 11222211 011223334444577777776553 344555543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-17 Score=187.11 Aligned_cols=301 Identities=14% Similarity=0.139 Sum_probs=197.4
Q ss_pred eecCCCCeEEEEEcc----cCcEEEEecC--CCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 341 DFHPVQHTLLLVGTN----VGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 341 ~~spdg~~lla~g~~----dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
+..+... .+.+|+. ++.|.+|++. +|+..... .. +...+..++|+|||++|+++
T Consensus 8 ~~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~ 67 (361)
T 3scy_A 8 STTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSV 67 (361)
T ss_dssp CGGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEE
T ss_pred hhCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEE
Confidence 3344444 4566643 5689999774 45433210 11 66778889999999999999
Q ss_pred eCC----CEEEEEEccCC-CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe------cc
Q 001386 415 YSK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG 483 (1088)
Q Consensus 415 ~~d----g~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~------~~ 483 (1088)
+.+ +.|.+|++... ..+..+.....+......+++ +++. ++++...++.|.+|++.....+..+ .+
T Consensus 68 ~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 144 (361)
T 3scy_A 68 NEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKG 144 (361)
T ss_dssp ECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC
T ss_pred EccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccC
Confidence 875 79999998763 223333344456667888888 7773 3444446889999999754433211 11
Q ss_pred --------CCccEEEEeeeeeCCceEEEEEe-cCCeEEEEECCCCCc-------------eEEecCCCCceEEEEEccCC
Q 001386 484 --------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-------------RVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 484 --------~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-------------~~~~~~~~~~v~~~~~s~~g 541 (1088)
+...+.+++| +++|+++++++ .++.|.+|+++.... .............++|+|||
T Consensus 145 ~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg 222 (361)
T 3scy_A 145 SGPDKERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG 222 (361)
T ss_dssp CCSCTTTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CCCCccccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC
Confidence 1223567888 45777665554 589999999886542 12223344567899999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCCCEEEEEeC--CCcEEEEEcC--CCe--ee
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--LL 613 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~--~~~--~~ 613 (1088)
++++++.. .++.|.+|++.+++. +..+.....+......++|+|+|++++++.. ++.|.+|++. +++ .+
T Consensus 223 ~~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 223 KFAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp SEEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred CEEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 99888762 356799999987754 3333333322345689999999999977665 4899999985 454 34
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEe-CCCcEEEEeC--CCCCccccc-ccccCcceeeee
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILET--PESNSVDAA-GVLSDNLRKLSV 672 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~-~~~~~~v~~~~~ 672 (1088)
..+.. + ..+..++|+|||++|++++ .++.|.+|++ .+++..... ..+...+.|+.|
T Consensus 300 ~~~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 300 GYQLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred eEecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 44443 2 2468999999999888887 5789999654 455544332 223334555554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=213.24 Aligned_cols=236 Identities=16% Similarity=0.172 Sum_probs=176.8
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCEEEEEEccCCCcccceeEeccCC-CCEEEEEecCCCCcEEEEEEeC---CCcEEEE
Q 001386 396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 470 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s~---d~~i~vw 470 (1088)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+..++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 467999999999999999887 999999999776533 355555 68999999999 5 6776664 4555665
Q ss_pred eCCC---CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 471 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.+.. +... .+.... .+...+|++++++..+++++.++.. +||+++++.......+. .+++|||||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5433 3332 443332 2335577777665566666555554 99998876555443333 789999999999988
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cCh
Confidence 765444577999999988765 556655 7789999999999999888888 8999999998877 544332 235
Q ss_pred ceEE--------EecCCCEEEEEeCCCcEEEEeC
Q 001386 626 PRIC--------FNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 626 ~~v~--------~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999999999999999999998
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-18 Score=209.74 Aligned_cols=380 Identities=12% Similarity=0.028 Sum_probs=242.7
Q ss_pred eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccE--EEEEEeCCCCEEEEEeCC---------C
Q 001386 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 600 (1088)
Q Consensus 532 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~d---------g 600 (1088)
..+++|+|||++++++ ++.|++||+.+++....+.++......+ ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988875 3469999999999888888776222222 448899999999998876 5
Q ss_pred cEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccc-cccCcceeeeecCCCcce
Q 001386 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~ 679 (1088)
.+.+||+.+++... +..+ ...+...+|||||+.||.+. ++.|++|+..++...+... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999988654 3322 23578999999999999885 6799999998765432111 00000
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc-cce
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 758 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~v 758 (1088)
+..+.. --+|.-+ -......++|||||+.|+....| +.+
T Consensus 156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 000000 0000000 00223467999999999888765 448
Q ss_pred EEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCC---ce--eEE
Q 001386 759 LMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK--TIL 833 (1088)
Q Consensus 759 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~---~~--~~~ 833 (1088)
.+|++...... . .+...+..+.+.+.|... ...+|.+||+.+ ++ ...
T Consensus 196 ~~~~~~~~~~~-------------~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 196 PLIEYSFYSDE-------------S------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp CEEEEEECCST-------------T------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSCCCEE
T ss_pred ceEEEEeecCC-------------C------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCcceEE
Confidence 88876432210 0 133445566776666421 123689999998 73 233
Q ss_pred Eec------CCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCce----ee--eee--ccccCCee-----EEEE
Q 001386 834 TIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT-----GLVF 890 (1088)
Q Consensus 834 ~~~------~~~~~i~~l~~sp~d~~~lasg~~----dg~i~lwd~~~~~----~~--~~l--~~h~~~V~-----~l~~ 890 (1088)
.+. ++...+..++||| |+++++.... +..|++||+.+++ +. ..+ .+|.+.|. .++|
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred EecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 343 3677899999999 7886665533 3479999999987 32 222 45665554 7899
Q ss_pred CCCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeC-----C--eEEEE
Q 001386 891 SDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--HLAIY 958 (1088)
Q Consensus 891 s~dg~~la-s~s~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d-----~--~i~vw 958 (1088)
||||+.|+ ..+. + ..|++||+.+++. .+...+.. .+..+. ++|++.|+. +.. + .|+..
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEE
Confidence 99999887 6664 3 4688889887542 22233332 244443 255777766 432 2 45555
Q ss_pred EcCcceeeeeeec---CCCcCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCceEEEec
Q 001386 959 EAEELTCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 959 d~~~~~~~~~~~~---~h~~~v~~l~fs~dg~~l~s~s~d---g~v~vwd~~~~~~~~~~~ 1013 (1088)
++..+.....+.. +....+..+.|||||++++..... ..+.+++..+++....+.
T Consensus 397 ~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 397 QLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp ETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred ECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 6655443222221 234678899999999987755443 468888988887655443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-18 Score=190.39 Aligned_cols=283 Identities=11% Similarity=0.062 Sum_probs=193.2
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE-EeC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV-AYS 416 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las-~~~ 416 (1088)
+.++++++++ ++++++.+++|.+||+.+++.+.... .+....+..++|+|||+++++ +..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888887 78899999999999999998765421 112225788999999997654 456
Q ss_pred CCEEEEEEccCCCcccceeEec-cC-----CCCEEEEEecCCCCcEEEEEEeCC------------CcEEEEeCCCCce-
Q 001386 417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR- 477 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~l~l~s~s~d------------~~i~vwd~~~~~~- 477 (1088)
++.|.+||+.+++.... +. .+ ...+..++|+|||+ .+++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 88999999998875542 22 22 23378899999999 56666654 8999999998543
Q ss_pred --eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC------------------------c
Q 001386 478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G 531 (1088)
Q Consensus 478 --~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~ 531 (1088)
+..+. +...+.+++| +++++ +++++ +.|.+||+.+++....+..... .
T Consensus 139 ~~~~~~~-~~~~~~~~~~--s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRA--ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEE--CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeE--CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 3345777777 45666 55543 4499999988877665543320 2
Q ss_pred eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEE-EeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 001386 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 609 (1088)
Q Consensus 532 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1088)
...+++++++........ ....+..+|..+++.... +... ...+..++|+| ++++++++ ++.|.+||+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 344666655532211100 011233356665543211 1112 35788999999 99999888 88999999999
Q ss_pred CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
++.+..+.... .+.+++|+|++++|++++.++.|.+||..+++.+..+.
T Consensus 285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99888887543 36789999999988888889999999999887665544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-17 Score=184.39 Aligned_cols=297 Identities=9% Similarity=0.019 Sum_probs=198.8
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
..++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|++++++.. .++.|.+||+.+++.+..+...
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence 4567899999999999999999887766665443 25678999999998776652 3567999999999888777643
Q ss_pred ccc---cccEEEEEEeCCCCEEEEEeCC------------CcEEEEEcCCCee---eEEEeCCCCCCCCceEEEecCCCE
Q 001386 575 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 575 ~~~---~~~v~~~~~~~~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
... ...+..++|+|+|+++++++.+ +.|.+||+.+++. +..+..+. .+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---cccceeECCCCc-
Confidence 200 1236788999999999998865 8999999988543 34444332 478899999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
+++++ +.|.+||..+++....+....... + . ......+.+|...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~----------------------------~----~--~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNR----------------------------K----G--YSAPDVLYFWPHQ 204 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCC----------------------------T----T--BCCCBCCCCCCCC
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCC----------------------------c----c--ccCccceeeecCC
Confidence 55554 349999998876554332211000 0 0 0000112223211
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceE-----------EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAI-----------FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGP 785 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-----------~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1088)
... . .......+++++++... .....++.+.+|++.
T Consensus 205 ~~~----~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 251 (349)
T 1jmx_B 205 SPR----H--------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------- 251 (349)
T ss_dssp CTT----C--------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred Ccc----e--------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence 000 0 00123345555544211 122223444444321
Q ss_pred cceeeccCCCCCCCCeeEEEEec-CCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001386 786 QFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 864 (1088)
Q Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i 864 (1088)
.+...+.+++++| |+++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|
T Consensus 252 ----------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v 318 (349)
T 1jmx_B 252 ----------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDL 318 (349)
T ss_dssp ----------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEE
T ss_pred ----------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeE
Confidence 1345678899999 99999988 88999999999998887763 34577899999 78888888889999
Q ss_pred EEEEcCCceeeeeeccc
Q 001386 865 LIYNARSSEVISKLEGH 881 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~h 881 (1088)
++||+.+++.+..+..+
T Consensus 319 ~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 319 AVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEETTTTEEEEEEECS
T ss_pred EEEeccccceeeeeecC
Confidence 99999999988877654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-18 Score=191.97 Aligned_cols=256 Identities=11% Similarity=0.019 Sum_probs=177.3
Q ss_pred ecCCCCCeEE-----EEECCCCCEEEEEeC-CC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC
Q 001386 392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1088)
Q Consensus 392 ~~~h~~~V~~-----l~~s~dg~~las~~~-dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~ 463 (1088)
+..|...... .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556666665 899999999999987 66 48888998886443 2345555555778999999 7888888
Q ss_pred CCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe----------------------cCCeEEEEECCCCCc
Q 001386 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 521 (1088)
Q Consensus 464 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~ 521 (1088)
++.|++||+.+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877777677666656655577887777432 346799999988765
Q ss_pred eEEecCCCCceEEEEEcc-CCCEEEEEeeCCC--CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC
Q 001386 522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 522 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
... ..+...+..++|+| ||+.|+.+..... ....|+++|..++... .+..+. ....+..+.|+|||+.|+..+.
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~-~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA-EGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC-TTEEEEEEEECTTSSCEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC-CCcccccceECCCCCEEEEEec
Confidence 443 34455688999999 9999988775321 1446888998766543 333322 0125778899999998866443
Q ss_pred -CC----cEEEEEcCCCeeeEEEeCCCC--C-CCCceEEEecCCCEEEEE---------eCCCcEEEEeCCCCC
Q 001386 599 -DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESN 655 (1088)
Q Consensus 599 -dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iwd~~~~~ 655 (1088)
++ .|++||+.+++.......... . ......+|+|||+.|+.. ..+..|++||+.+++
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 22 399999999875433222210 0 012335799999988764 445689999988654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-17 Score=183.72 Aligned_cols=249 Identities=9% Similarity=0.103 Sum_probs=170.4
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcC-CceeEEEecC-CCCCeEEEEEcCCCCcE--EEEEe-------------CC
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD 861 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~~--lasg~-------------~d 861 (1088)
..+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| ++++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46778999999999988885599999997 7776543321 112356689999 7884 55553 68
Q ss_pred CeEEEEEcC-Cceeeeeec----cccCCeeEEEECCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCccCCCC
Q 001386 862 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 862 g~i~lwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~las~s~-Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... + ...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence 999999997 466554443 24567999999999999887764 6789999998 66543222222111 0 124
Q ss_pred eEEEEEcCCCCEEEEEe--CCeEEEEEcC--cceeee---ee--ec----CCCc------CEEEEE-EeeCCCEEEEEeC
Q 001386 935 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 994 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~--d~~i~vwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~s~s~ 994 (1088)
+.+++|+|||++++++. ++.|.+|++. +|+... .+ .. +|.. .+..++ |||||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998853 5789999765 565421 11 11 1222 588999 9999999887764
Q ss_pred C-C-----cEEEEEcC-CCceEEEeccccccCCCCccccccceEEEECCC--CCCEEEEEeCC-CcEEEEeCCCC
Q 001386 995 D-G-----TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1059 (1088)
Q Consensus 995 d-g-----~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--d~~~l~~~~~d-g~v~~w~l~~~ 1059 (1088)
+ + +|.+|++. +|++........... ..+..++|+|. ||++|++++.+ ++|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 2 89999996 676543211000001 11234778885 57888888765 89999998654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-17 Score=185.56 Aligned_cols=300 Identities=11% Similarity=0.007 Sum_probs=194.4
Q ss_pred chhheeecccCCCC-----ceeeeecCCCCeEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC
Q 001386 323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1088)
Q Consensus 323 p~~~~~~l~~h~~~-----V~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 395 (1088)
....+..|..+... +..++|||||++++++...+ ..|.+||+.+++.... ..++
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~ 79 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGK 79 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSS
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCC
Confidence 34445556555433 88999999999655555443 3688889988865431 1122
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEE-------------------EEecCCCCcE
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQI 456 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~l 456 (1088)
......+.|||||++|+.++.++.|++||+.+++... ....+...... ++|+|+++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~- 155 (396)
T 3c5m_A 80 GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW- 155 (396)
T ss_dssp CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-
T ss_pred CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc-
Confidence 2223347899999999999999999999999886432 22223332222 356788873
Q ss_pred EEEEE-----eCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC------CeEEEEECCCCCceEEe
Q 001386 457 SVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~-----s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~ 525 (1088)
++.+ ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||++........
T Consensus 156 -~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 156 -EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp -HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred -eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 3332 45678999999998865544 46677888888541 45556655543 35888888765543333
Q ss_pred cCC-CCceEEEEEccCCCEEEEEeeCC-CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC-CCCEEEEEe-----
Q 001386 526 DAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----- 597 (1088)
Q Consensus 526 ~~~-~~~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s----- 597 (1088)
... ...+..++|+|||++|+.++... .....|++||+.+++....... . ... +.|+| +|+.+++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC--
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcce
Confidence 321 23578899999999888776432 2224599999998876543322 2 123 88999 999888754
Q ss_pred -----------CCCcEEEEEcCCCeeeEEEeCCCCC--------CCCceEEEecCCCEEEEEeC-CCcEEEE--eCCCC
Q 001386 598 -----------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES 654 (1088)
Q Consensus 598 -----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--d~~~~ 654 (1088)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 01456899999998887765 4554554 44444
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=178.60 Aligned_cols=250 Identities=9% Similarity=0.060 Sum_probs=172.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEcc-CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-----------
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 462 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s----------- 462 (1088)
....+..++|+|||++|++++.+ .|.+|++. +++.... .....+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-eEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34568889999999999998888 89999997 7654321 111111 235678999999853355553
Q ss_pred --CCCcEEEEeCC-CCceeEEec----cCCccEEEEeeeeeCCceEEEEEec-CCeEEEEECC-CCCceE--Eec--CCC
Q 001386 463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD-SLGARV--DYD--APG 529 (1088)
Q Consensus 463 --~d~~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~--~~~--~~~ 529 (1088)
.++++.+|++. +|+....+. .+...+.+++| +++|++++++.. ++.|++||++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 476654443 24567888888 457777777654 6899999998 555432 232 235
Q ss_pred CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC--CCceeE---EEecccc----ccc------cEEEEE-EeCCCCEE
Q 001386 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 593 (1088)
Q Consensus 530 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~~~~~~l 593 (1088)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|||+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999988763 24467787654 565432 2322110 111 588899 99999998
Q ss_pred EEEeCC-C-----cEEEEEcC-CCeeeEE---EeCCCCCCCCceEEEec---CCCEEEEEeCC-CcEEEEeCCCC
Q 001386 594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 654 (1088)
Q Consensus 594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 654 (1088)
+++..+ . .|.+|++. +++.... ..... .....++|+| ||++|++++.+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 5665432 22222 2357899999 89999999864 89999998754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-16 Score=175.62 Aligned_cols=297 Identities=11% Similarity=0.119 Sum_probs=201.5
Q ss_pred CCCCeEEEEE-----cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC--
Q 001386 344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-- 416 (1088)
Q Consensus 344 pdg~~lla~g-----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~-- 416 (1088)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|+|||++|++++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3666554443 2478999999999987654 2233344 8999999999999863
Q ss_pred --------CCEEEEEEccCCCcccceeEecc---CCCCEEEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEE-ec
Q 001386 417 --------KHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 482 (1088)
Q Consensus 417 --------dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~s--~d~~i~vwd~~~~~~~~~-~~ 482 (1088)
++.|.+||+.+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.. +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 56799999998876654322211 224567899999999 455554 368999999999998887 65
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-------EecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
... . ..+.+.+.. ...+++.+.||.+.+|+++...... .+.....+ ..+.+++++..++..+. ++
T Consensus 150 ~~~-~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 AAG-C-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp GTT-E-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred CCC-c-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 322 1 223343332 2577889999999999987533322 11122222 23345677877776653 34
Q ss_pred eEEEEeCCCCcee--EEEeccc---cc----cccEEEEEEeCCCCEEEEEeC-----------CCcEEEEEcCCCeeeEE
Q 001386 556 FLVEWNESEGAIK--RTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 556 ~i~iwd~~~~~~~--~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 615 (1088)
.++++|...+... ..+.... .. ......++|+|+++.++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 6999998755422 2221100 00 011112689999988887653 34899999999999999
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC--CcccccccccCcceeeeecCCC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
+..+. ...++|+|||++|++++. +.|.+||..++ +.+..+.........++++|.+
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 98664 689999999999998887 99999999999 7777765555666667777543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-16 Score=173.09 Aligned_cols=304 Identities=10% Similarity=0.096 Sum_probs=204.7
Q ss_pred cCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee------CCCCceeEEEEeCCCCceeEEEecccc---c
Q 001386 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEGAIKRTYQGLQL---Q 577 (1088)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~~~~~i~iwd~~~~~~~~~~~~~~~---~ 577 (1088)
.|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..+++.+..+..... +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999988877766655444 8999999999998863 122356799999999998888764320 1
Q ss_pred cccEEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeEE-EeCCCCCCCCceEEEecCC-CEEEEEeCCCcEEEEeCCC
Q 001386 578 HNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPE 653 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~ 653 (1088)
......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 134567899999999999864 68999999999998887 65432 2335677765 6778888999999988764
Q ss_pred -CCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcc
Q 001386 654 -SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732 (1088)
Q Consensus 654 -~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 732 (1088)
++...... ...+|+...
T Consensus 183 ~g~~~~~~~-----------------------------------------------~~~~~~~~~--------------- 200 (361)
T 2oiz_A 183 DGKVASQSR-----------------------------------------------SKQMFSVKD--------------- 200 (361)
T ss_dssp TSSEEEEEE-----------------------------------------------CCCCSCTTT---------------
T ss_pred CCcEeeecc-----------------------------------------------ccceEcCCC---------------
Confidence 22210000 001111100
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
.. ..+.+++++..++..+.++.+.++++....... ...|........ .. . -.......++++||++.
T Consensus 201 --~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~-----~~~~~~~~~~~~---~~-~-~~p~g~~~~a~~~dg~~ 267 (361)
T 2oiz_A 201 --DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV-----DGPWSLLNDEDK---AK-N-WVPGGYNLVGLHRASGR 267 (361)
T ss_dssp --SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-----EEEEESCCHHHH---HT-T-CEECCSSCEEEETTTTE
T ss_pred --Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee-----cccccccCcccc---cc-c-cccCCeeEEEEecCCCe
Confidence 00 011224455555555566777777764332100 000111000000 00 0 00111223789999888
Q ss_pred EEEEe------------CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc--eeeeee
Q 001386 813 LFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKL 878 (1088)
Q Consensus 813 l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~~~~l 878 (1088)
+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++. +.|.+||..++ +.+..+
T Consensus 268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 77653 2379999999999999998776 99999999 8889998887 99999999999 999998
Q ss_pred ccccCCeeEEEECCCCC
Q 001386 879 EGHSKRVTGLVFSDALN 895 (1088)
Q Consensus 879 ~~h~~~V~~l~~s~dg~ 895 (1088)
..+......++++|||+
T Consensus 344 ~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 344 EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTSCSSEEEEEECCCSC
T ss_pred ccCCCCcEEEEecCCCC
Confidence 77777889999999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-14 Score=167.09 Aligned_cols=329 Identities=11% Similarity=0.112 Sum_probs=223.6
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC--CCeeeEEEeCCCCCCCCceEEEe
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 6679999999999998887533 56789999999999999999999999996 8888888875432 4689999
Q ss_pred ----cCCCEEEEEeC-CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccccc
Q 001386 632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1088)
Q Consensus 632 ----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 706 (1088)
|||+++++++. ++.+.++|..+.+.+..+......+....+.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~--------------------------------- 295 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH--------------------------------- 295 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE---------------------------------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc---------------------------------
Confidence 69998887765 5899999988776655433110000000000
Q ss_pred CccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE-EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCC
Q 001386 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGP 785 (1088)
Q Consensus 707 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1088)
....+..+..++++..+ +.....|.|.++|+.....
T Consensus 296 --------------------------p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----------------- 332 (567)
T 1qks_A 296 --------------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----------------- 332 (567)
T ss_dssp --------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------------
T ss_pred --------------------------CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------------
Confidence 11245667777776544 4445568888877543211
Q ss_pred cceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecC-----CCCCeEEEEEcCCCCcEEEEE
Q 001386 786 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIG 858 (1088)
Q Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d~~~lasg 858 (1088)
+..... ........+.|+|+|++++++. +++|.++|+.+++.+..+.. |.+.-..+ ++|+++.+.+++
T Consensus 333 -~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~ 407 (567)
T 1qks_A 333 -LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATS 407 (567)
T ss_dssp -EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred -ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeC
Confidence 111111 1234566789999999998876 68899999999998776653 22222222 678335555555
Q ss_pred e-CCCeEEEEEcCC-------ceeeeeeccccCCeeEEEECCCCCEEEEEeC-------CCcEEEEEcCCCce---ee-e
Q 001386 859 M-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI---QT-C 919 (1088)
Q Consensus 859 ~-~dg~i~lwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~las~s~-------Dg~i~iwd~~~~~~---~~-~ 919 (1088)
. .++.|.++|..+ .+.+.++......-..+..+||+++|.+... ..+|.++|+.+.+. .. .
T Consensus 408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~ 487 (567)
T 1qks_A 408 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEF 487 (567)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCE
T ss_pred CCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCc
Confidence 4 468999999988 6778888765444355788999999987663 35899999987511 11 1
Q ss_pred eeeecCC--CCccCCCCeEEEEEcCCCCEEEEE-e-----CCeEEEEEcCcceeeeeee
Q 001386 920 RSLQTPD--GVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 920 ~~~~~~~--~~~~~~~~v~~~~fs~dg~~l~~~-~-----d~~i~vwd~~~~~~~~~~~ 970 (1088)
..+...+ +.......+.++.|++||+++.++ . ++.|.|+|..+++.+..+.
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 488 KTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 2222100 000011358999999999998875 2 5889999999999887754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-14 Score=165.17 Aligned_cols=325 Identities=13% Similarity=0.145 Sum_probs=221.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC--CCCcccccccccC
Q 001386 588 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 665 (1088)
Q Consensus 588 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 665 (1088)
+.+..+++...++.|.++|..+++.+..+.... .+..++|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 344556667789999999999999999887543 25689999999999999999999999985 443322111
Q ss_pred cceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEe--
Q 001386 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-- 743 (1088)
Q Consensus 666 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-- 743 (1088)
.......++|+
T Consensus 238 -------------------------------------------------------------------~G~~P~~ia~s~~ 250 (567)
T 1qks_A 238 -------------------------------------------------------------------IGSEARSIETSKM 250 (567)
T ss_dssp -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred -------------------------------------------------------------------cCCCCceeEEccc
Confidence 11234678999
Q ss_pred --cCCceEEEecc-ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC------CC-CCCeeEEEEecCCCEE
Q 001386 744 --NGGQAIFALAS-NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKNDAYL 813 (1088)
Q Consensus 744 --~~g~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~~~~s~dg~~l 813 (1088)
|||++++++.. ++.+.++|..+.+. +........ .| ...+..+..++++..+
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~------------------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEP------------------KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCE------------------EEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcE------------------EEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 69998877765 58888887543322 211111100 01 2367889999988776
Q ss_pred EEEe--CCcEEEEEcCCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCceeeeeecc-----ccC
Q 001386 814 FSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG-----HSK 883 (1088)
Q Consensus 814 ~~~~--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~i~lwd~~~~~~~~~l~~-----h~~ 883 (1088)
+... .|.|.++|..+.+.. ..+ ........+.|+| ++++++++. .++.|.++|+.+++++..+.- |.+
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred EEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 6664 689999998875432 222 2345677899999 787776655 678999999999988766643 433
Q ss_pred CeeEEEECCCCCEE-EEEe-CCCcEEEEEcCCCc-----eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe-----
Q 001386 884 RVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----- 951 (1088)
Q Consensus 884 ~V~~l~~s~dg~~l-as~s-~Dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~----- 951 (1088)
.-.. .++|++..+ ++.. .+++|.++|..+.+ ......+....+ .-..+.++||++++.+..
T Consensus 391 ~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 391 RGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp TCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECTTCSS
T ss_pred ccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecCCCCC
Confidence 2222 257875544 4443 46899999998732 111222332211 123578999999999854
Q ss_pred ---CCeEEEEEcCcc-----eee-eeee-------cCCCcCEEEEEEeeCCCEEEEEe-----CCCcEEEEEcCCCceEE
Q 001386 952 ---ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 952 ---d~~i~vwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~dg~~l~s~s-----~dg~v~vwd~~~~~~~~ 1010 (1088)
.+.|.|+|+.+. ... ..+. ..-...+..+.|++||+++.++. .++.|.|+|..++++..
T Consensus 464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred cccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence 358999999977 211 2211 11246789999999999987663 37999999999999998
Q ss_pred Eec
Q 001386 1011 RIL 1013 (1088)
Q Consensus 1011 ~~~ 1013 (1088)
.+.
T Consensus 544 ~i~ 546 (567)
T 1qks_A 544 VIK 546 (567)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-16 Score=188.11 Aligned_cols=294 Identities=10% Similarity=0.001 Sum_probs=195.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEE--cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeE-----
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 400 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g--~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~----- 400 (1088)
..+.+|...|..++||+++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 45678999999999999865 56666 5578899999654443322 444555555
Q ss_pred ----EEEEC--CCCCE-EEEEeC-CCEEEEEEcc--C-CCcccceeEecc-----CCCCEEEEEecCCCCcEEEEEEeCC
Q 001386 401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 464 (1088)
Q Consensus 401 ----~l~~s--~dg~~-las~~~-dg~i~vwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~s~d 464 (1088)
..+|+ |||++ ||.++. +..|.+|++. + ++ .+ .+.. |...+..++|+|||+ .|++++.|
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 55565 99999 887654 4556666665 3 43 22 3444 677899999999999 67776666
Q ss_pred ----------CcEEEEeCCC------CceeEEec-cCCccEEEEeeeeeCCceEEEEEecCC--------eEEEEECC-C
Q 001386 465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG--------KIKAWLYD-S 518 (1088)
Q Consensus 465 ----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~-~ 518 (1088)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.++ .|.+||++ +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 44 44555 56666777777 56888998887653 79999998 4
Q ss_pred C---CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccc-----cEEEEEEeCCC
Q 001386 519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 590 (1088)
Q Consensus 519 ~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 590 (1088)
+ ........+...+..++|+|||++++++.. ++...|++||..+++.......+..... .+..++|+|++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 333333444678899999999995555432 3345788999877776544443321000 14678899999
Q ss_pred CEEEEEeCCCcEEEE--EcCCCeeeEEEeCCCCCCCCceEEEecCCCE--EEEEeCCC--cEEEEeCCCCCcc
Q 001386 591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV 657 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iwd~~~~~~~ 657 (1088)
..+++++. +.+++| |..+++ +..+..+.. .+..+ +++++.. +++++.+. .|.+++..+++..
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 99999988 999999 655555 555554422 34444 1455543 33444444 4555666666543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-15 Score=162.24 Aligned_cols=249 Identities=12% Similarity=0.085 Sum_probs=183.5
Q ss_pred CCCeeEEEEecCCCEEEEEeCC-------------------------cEEEEEcCCceeEEEec-CCCCCeEEEEEcCCC
Q 001386 798 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 851 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d 851 (1088)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4578999999999999887733 69999999998877665 3446789999999 7
Q ss_pred CcEEEEEeCCCeEEEEEcCCce-eeeee---------ccccCCeeEEEECC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001386 852 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 852 ~~~lasg~~dg~i~lwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~las~s-~Dg~i~iwd~~~~~~~~~ 919 (1088)
++++++...++.|++||..... .+..+ .++......|+++| +|.++++.+ .++.|++|+.+. ....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence 8888888889999999976442 44555 34555789999999 888888886 689999999543 3221
Q ss_pred eeeecC-CCC---ccCCCCeEEEEEcCC-CCEEEEE-eCCeEEEEEcCcceeeeeee-cCCCcCEEEEEEee------CC
Q 001386 920 RSLQTP-DGV---MTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------DC 986 (1088)
Q Consensus 920 ~~~~~~-~~~---~~~~~~v~~~~fs~d-g~~l~~~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~------dg 986 (1088)
.+... .+. .........++|+|+ +.++++. .++.|++||..+|+.+..+. ..+...+..++|+| +|
T Consensus 180 -~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 180 -QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp -EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred -EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence 11110 000 000124789999999 5655553 56789999999898887754 34567889999999 34
Q ss_pred CEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 987 RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 987 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
...++...+..|++|++.+|+.+..+.... ..-..|..++++| ||.++++...++.|.+|++..
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 333333445689999999999888764211 1123567899999 788999999999999999854
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-15 Score=166.23 Aligned_cols=262 Identities=9% Similarity=0.109 Sum_probs=177.3
Q ss_pred CceeeeecCCCCeEEEEE--------cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 336 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
.+..+++ ||++++.+. ..++.|.+||+.+++... + ..+..++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677788 898655442 125789999998876432 2 46888999999
Q ss_pred CCEEEEEeCC---C--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-------------------
Q 001386 408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 463 (1088)
Q Consensus 408 g~~las~~~d---g--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~------------------- 463 (1088)
|++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeec
Confidence 9999988754 3 47888888875432 323334 99999999999 4555442
Q ss_pred --------CCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCC-------eEEEEECCCCCceEEecCC
Q 001386 464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 528 (1088)
Q Consensus 464 --------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~ 528 (1088)
...|.+||+.+++.+..+.. . .+..+.| +++| +++++..++ ...+|.+++ .....+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~--spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIW--HRDK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEE--ETTE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccC--CCCe-EEEEEecccccccccccccEEEeCC-CceEEeccC
Confidence 25799999999887555554 3 6677777 4577 777776542 445555543 333333333
Q ss_pred CCceEEEEEccCCCEEEEEeeCCC----CceeEEEEeCCCCceeEEEeccccccccEEE-EEEeCCCCEEEEEeCCCcEE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~ 603 (1088)
..+..+ +|||++|+.++.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444443 999999988775331 245789999 565544444444 56775 8899 88 888899999999
Q ss_pred EEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcE-EEEeCC
Q 001386 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 652 (1088)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iwd~~ 652 (1088)
+| +.+++....+.. ...+.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444432 23578899999 677777776654 777665
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-14 Score=154.83 Aligned_cols=242 Identities=10% Similarity=0.096 Sum_probs=176.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecC------CCCCeEEEEEc-CCCCcEEEEEeC-CCeEEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 867 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-p~d~~~lasg~~-dg~i~lw 867 (1088)
+-..+.+++++++|.++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456788999999999888765 7899999987 666666542 33578899995 5 7777776643 8899999
Q ss_pred EcCCceeeeeecc-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCE
Q 001386 868 NARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 946 (1088)
Q Consensus 868 d~~~~~~~~~l~~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~ 946 (1088)
| .+++.+..+.. +...+.+++++++|+++++...++.|.+||..... . ..+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~--~~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-L--HKFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-E--EEEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-E--EEeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 66777766643 45678999999999988888888999999976422 1 111111 111 24789999999997
Q ss_pred EEEE-eCCeEEEEEcCcceeeeeee-cCCCcCEEEEEEeeCCCEEEEEeCCC-cEEEEEcCCCceEEEeccccccCCCCc
Q 001386 947 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1023 (1088)
Q Consensus 947 l~~~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1023 (1088)
+++. .++.|++||.. ++.+..+. .++...+..++++++|.++++...++ .|.+|+. +++.+..+....
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~------- 248 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV------- 248 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-------
Confidence 7774 57899999974 55555433 22346789999999999888887776 9999995 566666554211
Q ss_pred cccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1024 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1024 ~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
....+.+++++| +|+++++ +.|++|.+|++....
T Consensus 249 -~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 249 -KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp -CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred -CCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 112466799999 7776666 679999999986543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-16 Score=175.88 Aligned_cols=244 Identities=9% Similarity=-0.017 Sum_probs=164.0
Q ss_pred CeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCE-EEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 398 SVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
.+.+++|||||++||.+... ..|.+||+.+++... +..+...+ ..+.|+|||+ .|+.++.++.|++||+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 37788999999999887653 478899998876432 33333333 3378999999 78888888899999999
Q ss_pred CCceeEEeccCCccEEE---Eee--------------eeeCCceEEEEE-----ecCCeEEEEECCCCCceEEecCCCCc
Q 001386 474 TGSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLG 531 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~ 531 (1088)
+++.......+...... +++ ..+++++.++.. ..+..|.+||+.+++..... .+...
T Consensus 111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~ 189 (396)
T 3c5m_A 111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW 189 (396)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence 98876655545443222 111 113344444332 35668999999887655444 34557
Q ss_pred eEEEEEcc-CCCEEEEEeeCCCC--ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEE
Q 001386 532 CTRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIK 603 (1088)
Q Consensus 532 v~~~~~s~-~g~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~ 603 (1088)
+..+.|+| +++.|+.++..... ...|++||..+++......... ...+..+.|+|+|++|+.++.+ +.|+
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEE
Confidence 88999999 89888877642110 1569999987665433322111 2357889999999988876543 4499
Q ss_pred EEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEEe----------------CCCcEEEEeCCCCC
Q 001386 604 IWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESN 655 (1088)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~ 655 (1088)
+||+.+++......... .. +.|+| ||+++++++ .++.|++||..+++
T Consensus 268 ~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 268 KANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 99999887654433221 22 89999 999888765 24678888877653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-14 Score=154.28 Aligned_cols=247 Identities=11% Similarity=0.089 Sum_probs=184.5
Q ss_pred CCceeeeecCCCCeEEEEEccc------------------------CcEEEEecCCCcceeeeceeeeeeccccccceee
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1088)
+.|.+|+++|+|+ ++++...+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4799999999998 67777766 47999999888765421
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceeEe---------ccCCCCEEEEEecC-CCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 459 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~l~l~ 459 (1088)
..++-..+..++++|+|+++++...++.|++||..... .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 12455678999999999988888889999999986542 222 23 24455789999999 677 677
Q ss_pred EEe-CCCcEEEEeCCCCceeEEeccCC----------ccEEEEeeeeeCC-ceEEEEEecCCeEEEEECCCCCceEEec-
Q 001386 460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLGARVDYD- 526 (1088)
Q Consensus 460 s~s-~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 526 (1088)
+.+ .++.|++|| .+|+.+..+.... .....+++. ++ +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d--~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV--PHLDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE--CCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 775 689999999 7788877774322 237788885 45 6788888899999999998777766653
Q ss_pred -CCCCceEEEEEccCCCEEEEEeeC---CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcE
Q 001386 527 -APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1088)
Q Consensus 527 -~~~~~v~~~~~s~~g~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1088)
.....+..++|+| +..++..+.. ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|
T Consensus 237 ~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 3455788999999 4444433211 1224579999999999998875322233678999999999777888889999
Q ss_pred EEEEcCC
Q 001386 603 KIWDMNK 609 (1088)
Q Consensus 603 ~iwd~~~ 609 (1088)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=177.04 Aligned_cols=250 Identities=11% Similarity=-0.000 Sum_probs=173.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEE--eCCCEEEEEEccCCCcccceeEeccCCCCEE---------EEEec--CCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 458 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~--~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~l~l 458 (1088)
+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 66789999999999887777777 558899999975443333 5666766665 56665 999941 4
Q ss_pred EEEe-CCCcEEEEeCC--CCceeEEecc-----CCccEEEEeeeeeCCceEEEEEecC----------CeEEEEECCCC-
Q 001386 459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL- 519 (1088)
Q Consensus 459 ~s~s-~d~~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~- 519 (1088)
+.++ .+..|.+|++. ++.....+.. |...+..++| ++||+.|++++.+ ..|++||+.+.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL--LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE--ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE--CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4433 35667777765 2044556655 5677888888 5578899988877 58999999872
Q ss_pred ----CceEEec-CCCCceEEEEEccCCCEEEEEeeCCC----CceeEEEEeCC-CC---ceeEEEeccccccccEEEEEE
Q 001386 520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF 586 (1088)
Q Consensus 520 ----~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~ 586 (1088)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW 249 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence 2333444 44567788999999999998875442 23679999998 57 4444444444 67899999
Q ss_pred eCCCCEEEEEeCCC--cEEEEEcCCCeeeEEEeCCCCC------CCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 587 ~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
+|||+.+++++.++ .|.+||+.+++.......+... ..+..++|+|+++++++++. +.++||.+
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 99999777777788 5666776666654433322111 11457888888888888887 88888743
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-10 Score=140.41 Aligned_cols=584 Identities=9% Similarity=0.035 Sum_probs=338.8
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|+++.-.++|... .|+.+| +..||-.+ ... +.... ... ..-....|.++...++|.+.+ |+
T Consensus 44 ~v~~I~qD~~G~lW--igT~~G-L~ryDG~~---f~~-----~~~~~----~~~--~~l~~n~I~~i~~d~~g~lWi-gT 105 (795)
T 4a2l_A 44 TVFSIDQDKRGNMW--FATYDG-VNKYDGYA---FTV-----YQHNE----DDP--NSIANDISRIVKTDSQGRVWI-GT 105 (795)
T ss_dssp CEEEEEECTTSCEE--EEETTE-EEEECSSC---EEE-----ECCCT----TCT--TSCSCSCEEEEEECTTSCEEE-EE
T ss_pred eeEEEEEcCCCCEE--EeecCc-CcccCCCc---eEE-----EeCCC----CCC--CcccccceeEEEECCCCCEEE-Ee
Confidence 79999999999744 444555 55666332 111 10000 000 000246799999999887654 55
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCC----CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC-Ccc-EE
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-VY 489 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~-v~ 489 (1088)
.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.+..||..+++.......+ ... |.
T Consensus 106 ~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~ 176 (795)
T 4a2l_A 106 RDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIA 176 (795)
T ss_dssp SSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCE
T ss_pred CCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcceE
Confidence 666 899998776421 2221111 288888888887 333 444 45899998776543211111 112 66
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
++.. +.++. +..++.++.+..|+..+.+..... ......|.++...++|...+..... -+..||..+++..
T Consensus 177 ~i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~~ 248 (795)
T 4a2l_A 177 STLY--RQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEIK 248 (795)
T ss_dssp EEEE--EETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEEE
T ss_pred EEEE--CCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeEE
Confidence 6665 33444 444666656888987766543321 1234568888888888766654211 2899998877654
Q ss_pred EEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-----CCCCCCceEEEecCCCEEEE
Q 001386 569 RTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 569 ~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~ 639 (1088)
...... ......|.++...++|...+ |+.+ .|.+||..+++........ -....|.++...++|.+ -+
T Consensus 249 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wi 325 (795)
T 4a2l_A 249 NYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WL 325 (795)
T ss_dssp EECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EE
T ss_pred EeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EE
Confidence 432221 11235699998888876544 4555 5899998877654332211 01235778888888864 45
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
|+.++-|..++..+.... .... . +.
T Consensus 326 gt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~---------------------- 350 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY---------------------- 350 (795)
T ss_dssp EESSSCEEEECGGGGSSE-EECC----------C----------------------TT----------------------
T ss_pred EECCCCeEEeCCCcccce-EEcC----------C----------------------CC----------------------
Confidence 666677777765432110 0000 0 00
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
+.......|.++...++|. +..++.++-+..|+...... +.+....+. ....-...
T Consensus 351 ---------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~--------~~~~~~~~~------~~~~l~~~ 406 (795)
T 4a2l_A 351 ---------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF--------TSYTLQEDE------SARGIGSN 406 (795)
T ss_dssp ---------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE--------EEECCC------------CCSCS
T ss_pred ---------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE--------EEEecCCCC------cccCCCCc
Confidence 0001234678888888887 44566665677766432211 000000000 00001346
Q ss_pred CeeEEEEecCCC-EEEEEeCCcEEEEEcCCceeEEEec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001386 800 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 800 ~v~~~~~s~dg~-~l~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
.|.+++..++|. +.+...++.|.+||..+++...-.. .+...|.++...+ ++.+.+ |+.+ -+.+||..+++.
T Consensus 407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSF 483 (795)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEE
T ss_pred cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeE
Confidence 789999999999 5554446779999998776443222 1345789999888 666554 4454 589999888765
Q ss_pred eeeecc------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC-CCCccCCCCeEEEEEcCCCCEE
Q 001386 875 ISKLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 875 ~~~l~~------h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
...... +...|.++...++|++.+... + -|..||..+++. . +... .........|.++...++|++.
T Consensus 484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d~~g~lW 557 (795)
T 4a2l_A 484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q---KASILPVSNVTKLFTNCIYEASNGIIW 557 (795)
T ss_dssp EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E---ECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred EEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E---EecCCCCCCCCCCeeEEEEECCCCCEE
Confidence 432211 236799999999998877554 4 488999887543 1 1100 0001111368999999999977
Q ss_pred EEEeCCeEEEEEcCcceeeeeeecC---CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCcc
Q 001386 948 LLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1024 (1088)
Q Consensus 948 ~~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1024 (1088)
+.+.. .+..||..+++... +... ....|.++...++|.+.+++ ++.|..|+..++... .+....-++..
T Consensus 558 igT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~~--- 629 (795)
T 4a2l_A 558 VGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQSN--- 629 (795)
T ss_dssp EEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSCS---
T ss_pred EEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCccc---
Confidence 76654 78899988775433 2211 14568889888889876654 456888998877643 33322222221
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1025 ~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.....++...+ +|. |..|+.+| +..++..
T Consensus 630 -~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 630 -QFNTASYCRTS-VGQ-MYFGGING-ITTFRPE 658 (795)
T ss_dssp -CEEEEEEEECT-TSC-EEEEETTE-EEEECGG
T ss_pred -cCccCceeECC-CCe-EEEecCCc-eEEEcHH
Confidence 22234566676 666 55566777 5556654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-10 Score=142.08 Aligned_cols=532 Identities=8% Similarity=0.039 Sum_probs=318.7
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|.++...++|.. .+ |+. +.+..||..+++.... .. . .......|.++...++|.+.+.
T Consensus 88 n~I~~i~~d~~g~l-Wi-gT~-~Gl~~yd~~~~~f~~~-~~------------~---~~~~~~~i~~i~~d~~g~lwi~- 147 (795)
T 4a2l_A 88 DISRIVKTDSQGRV-WI-GTR-DGLSRYDEEKDIFQNF-FY------------E---KNGKHLQVNGIEEISPEQLLIS- 147 (795)
T ss_dssp SCEEEEEECTTSCE-EE-EES-SCEEEEETTTTEEEEE-CC------------E---ETTEECCCCEEEEEETTEEEEE-
T ss_pred cceeEEEECCCCCE-EE-EeC-CchheeCCCCCeEEec-cc------------c---ccCCCceEEEEEECCCCCEEEE-
Confidence 37999999999984 33 334 4589999877653221 00 0 0000012888888888876654
Q ss_pred eCCCEEEEEEccCCCcccceeEeccC-CCC-EEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccCCccEEEE
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~ 491 (1088)
+.+ .|..||..+++..... .++ ... |.++...+++. +..++.++.+..||..+++..... ......|.++
T Consensus 148 t~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 148 TPE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp ETT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred ECC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 444 4899998775422110 011 123 88888888886 444665556999998877654321 1234567777
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC-------CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.. +.++. +..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQ--QSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT 291 (795)
T ss_dssp EE--EETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred EE--cCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence 65 33444 44555554588898776544332211 234689999999888666542 1 289999887
Q ss_pred CceeEEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC-----CCCCCceEEEecCCC
Q 001386 565 GAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGT 635 (1088)
Q Consensus 565 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~ 635 (1088)
+......... ......|.++...++|. +..|+.++.|..|+..++... .+.... ....|.++...++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7654432211 11235799999888876 556777778999987655432 222110 123477888888776
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccc
Q 001386 636 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 715 (1088)
+. +|+.++-|..|+..++......... ..
T Consensus 370 lW-iGt~~~Gl~~~~~~~~~~~~~~~~~---------------------------------~~----------------- 398 (795)
T 4a2l_A 370 LW-IGTNDGGLNLYNPITQRFTSYTLQE---------------------------------DE----------------- 398 (795)
T ss_dssp EE-EEESSSCEEEECTTTCCEEEECCC-----------------------------------------------------
T ss_pred EE-EEECCCCeEEEcCCCCcEEEEecCC---------------------------------CC-----------------
Confidence 44 5777777888887654221100000 00
Q ss_pred cccCCCcceeeecCC-ccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCC
Q 001386 716 LFARPSECQSLLLPS-KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD 794 (1088)
Q Consensus 716 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1088)
+. ......|.+++..++|..|..++.++-+..|+...+.. +.+.... .
T Consensus 399 -------------~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--------~~~~~~~----------~ 447 (795)
T 4a2l_A 399 -------------SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--------ENFNQRN----------S 447 (795)
T ss_dssp ----------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--------EEECTTT----------S
T ss_pred -------------cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--------EEeecCC----------C
Confidence 00 00234678888888888455566655677777543321 0010000 0
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001386 795 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd 868 (1088)
......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++.+.+ |+. +-+..||
T Consensus 448 ~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~ 523 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSVFK 523 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEEEE
T ss_pred CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEEEe
Confidence 01356789999999998777665 5689999887654432211 235789999988 666555 444 4588999
Q ss_pred cCCceeeeeec-------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc
Q 001386 869 ARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 941 (1088)
Q Consensus 869 ~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 941 (1088)
..+++. .+. .+...|.++...++|.+.+... .| |..||..+++.. .+....+... ..|.++...
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~---~~~~~~gl~~--~~i~~i~~d 594 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIK---RYNTTNGLPN--NVVYGILED 594 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEE---EECGGGTCSC--SCEEEEEEC
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEE---EeCCCCCCch--hheEEEEEC
Confidence 887765 222 2345799999999998776544 34 888998775422 2222222221 358899999
Q ss_pred CCCCEEEEEeCCeEEEEEcCcceeeeeeecCC---CcCE--EEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 942 KDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 942 ~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
++|++.+++ ++.|..|+..+++.. .+.... ...+ .++...+||.+++ |+.+| +..++.
T Consensus 595 ~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p 657 (795)
T 4a2l_A 595 SFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRP 657 (795)
T ss_dssp TTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECG
T ss_pred CCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcH
Confidence 999887776 566888998876643 222111 2222 4667778887655 66677 444553
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-13 Score=148.12 Aligned_cols=248 Identities=14% Similarity=0.164 Sum_probs=177.6
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE-CCCCC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-s~dg~ 409 (1088)
.+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+..... .....+|...+..+++ .++++
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence 35556899999999998 78888888999999987 554432110 0001235567899999 57777
Q ss_pred EEEEEeC-CCEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec--cCC
Q 001386 410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1088)
Q Consensus 410 ~las~~~-dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~ 485 (1088)
++++... ++.|.+|| .+++.+. .+. .+...+..++++++|+ ++++...++.|.+||. +++.+..+. .+.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78999999 4555433 232 3445789999999998 7777777899999995 566666664 344
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC--CceEEEEEccCCCEEEEEeeCCCCce-eEEEEeC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 562 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~-~i~iwd~ 562 (1088)
..+..+++ ++++.++++...++.|++||.. ++....+.... ..+..++++++|+.+++... ++ .|.+||.
T Consensus 164 ~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVV--NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEE--CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEE--CCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 56888888 4467788888889999999974 34444444332 46889999999987777643 32 6999995
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+++.+..+..+. ....+..++++|+|+.+++ +.++.|++|+....
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566777776543 1234788999999976666 67999999998653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-14 Score=153.31 Aligned_cols=274 Identities=10% Similarity=0.025 Sum_probs=189.1
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|.+++|+|++. .++..+.++.++.| .++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTI---TAEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEE---ECEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCccc---ccceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 3688999999987 46666778899999 2332221 44566778999999999988888
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEec--cCCccE
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 488 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d----~~i~vwd~~~~~~~~~~~--~~~~~v 488 (1088)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876432 1224667899999999998 66666655 689999988877654443 244568
Q ss_pred EEEeeeeeCCceEEEEEec------CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
..+++. ++|.++++... .+.|..+|.+..+... +......+..++|+|+|+.++++.. .++.|++||.
T Consensus 138 ~~i~~d--~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFD--SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEEC--TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEEC--CCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 888884 46667766553 2456666555433332 2222335778999999997776542 2456999998
Q ss_pred CC-CceeEEEe-----ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC----CCCCceEEEec
Q 001386 563 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 632 (1088)
Q Consensus 563 ~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 632 (1088)
.+ +.....+. ... ....+..++++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 33332211 111 0136788999999998888878899999998 5677777654421 11468999999
Q ss_pred CCCEEEEEeCCC
Q 001386 633 NGTLLAVIANEN 644 (1088)
Q Consensus 633 ~~~~l~~~~~dg 644 (1088)
|++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 987777666553
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=168.92 Aligned_cols=250 Identities=10% Similarity=0.004 Sum_probs=176.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCC-----EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~-- 466 (1088)
+|...+..++|||||++||.++.++ .|++||+.+|+.... .+.. ..+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875442 1222 2367899999999 5666666655
Q ss_pred --------------EEEEeCCCCcee--EEec--cCCccEEEEeeeeeCCceEEEEEec-----CCeEEEEECCC-----
Q 001386 467 --------------IKVWDAVTGSRT--YSFE--GHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 518 (1088)
Q Consensus 467 --------------i~vwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~----- 518 (1088)
|++|++.++... ..+. .|...+..+.| ++||++|+..+. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999887632 2223 34555777777 567788887765 56899999986
Q ss_pred -CC-ceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEE
Q 001386 519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1088)
Q Consensus 519 -~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1088)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++. ..+.+..+. ....+..+.|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 42 34444444444443 5889999998887544346789999998874 234454443 013678889987777788
Q ss_pred EEeCCCc--EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC----CCcEEEEeCCCCC
Q 001386 595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1088)
Q Consensus 595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1088)
+...++. |.+|++.+|+.+..+..+ ...+..++++|++..++.... .+.+.+||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888875 566787778877777655 234677889999877664432 4789999998765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-13 Score=149.86 Aligned_cols=273 Identities=9% Similarity=0.083 Sum_probs=183.7
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
..+.+++|++++..++....++.++.|.-. .... +. .+...+.+++|+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~--~~--~~~~~~~~~~~~~~g~l~~ 60 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE---------------------PWLE--IS--KKGLQLEGLNFDRQGQLFL 60 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE---------------------EEEE--EE--SSCCCEEEEEECTTSCEEE
T ss_pred cccceeeecCCccceeEEeecccCcccccc---------------------eeEE--Ee--ccCccccCcEECCCCCEEE
Confidence 346677888888877777777777777311 0111 11 1445678999999999877
Q ss_pred EEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEEcCCceeeeeec--cccCCeeE
Q 001386 815 SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEVISKLE--GHSKRVTG 887 (1088)
Q Consensus 815 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~i~lwd~~~~~~~~~l~--~h~~~V~~ 887 (1088)
++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+...+.+
T Consensus 61 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 61 LDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp EETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred EECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 776 78899999998876655545667899999999 78888877666 689999998876543332 24567899
Q ss_pred EEECCCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEE
Q 001386 888 LVFSDALNILVSSGG------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE 959 (1088)
Q Consensus 888 l~~s~dg~~las~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd 959 (1088)
++++|+|+++++... .+.|..+|..+++... ... . . ..+..++|+|||+.|.++ .++.|.+||
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~---~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQ---N-I---SVANGIALSTDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEE---E-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eec---C-C---CcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 999999998887654 2445555555433221 111 1 1 136789999999977654 467899999
Q ss_pred cCc-ceeeee-----e--ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceE
Q 001386 960 AEE-LTCLKQ-----W--FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031 (1088)
Q Consensus 960 ~~~-~~~~~~-----~--~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
..+ +..+.. . ..++ ..+..++++++|.++++...++.|.+||. +++.+..+..... ..+....+.+
T Consensus 211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~----~~g~~~~~~~ 284 (333)
T 2dg1_A 211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR----DEGHMLRSTH 284 (333)
T ss_dssp ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG----GGTCSCBCCE
T ss_pred ecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC----ccccccCcce
Confidence 963 332211 1 1122 46788999999998888778899999998 5666655542110 0011114567
Q ss_pred EEECCCCCCEEEEEeCCC
Q 001386 1032 IAAHPLKPTQFAVGLTNG 1049 (1088)
Q Consensus 1032 ~~~~p~d~~~l~~~~~dg 1049 (1088)
++|+| |+..|++++.+|
T Consensus 285 ~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 285 PQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp EEECT-TSCEEEEEEECG
T ss_pred EEECC-CCCEEEEEeCcc
Confidence 88998 666666565553
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-09 Score=130.13 Aligned_cols=593 Identities=13% Similarity=0.100 Sum_probs=337.2
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|.++.-.++|...+ |+.+| +..||-.+ ... +....... .. ..-....|.++...++|..|.+|+
T Consensus 20 ~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~~-----~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWigt 84 (781)
T 3v9f_A 20 YVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FIT-----YYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIAT 84 (781)
T ss_dssp BEEEEEECTTSCEEE--EESSC-EEEECSSS---EEE-----ECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEEE
T ss_pred EeEEEEECCCCCEEE--ccCCc-CccccCCc---eEE-----EEcCCCCC--cc--ccccccccceEEEcCCCCEEEEEe
Confidence 799999999997444 44545 66666432 111 11000000 00 001235699999998888466677
Q ss_pred CCCEEEEEEccCCCcccceeE-ecc---CCCCEEEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCceeEEec-----cC
Q 001386 416 SKHIVQLYAYHGGSDARQQLE-IDA---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GH 484 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~-~~~---h~~~v~~~~~s~--d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~-----~~ 484 (1088)
.++-+..||..+++....... ... ....|.++.... ++. +..++.++.|..+|..+++...... ..
T Consensus 85 ~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~ 161 (781)
T 3v9f_A 85 QRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPALP 161 (781)
T ss_dssp SSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTTCS
T ss_pred CCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccCCC
Confidence 774499999887642210000 000 123688888877 665 4445545568899987765433211 11
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-------CCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
...|.++.. +.++ .|..++.++-+..||..+.+...... .....|.++...++|...+... . -+
T Consensus 162 ~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~-Gl 232 (781)
T 3v9f_A 162 SEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K-GL 232 (781)
T ss_dssp CCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-EE
T ss_pred ccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-cH
Confidence 345777665 3344 44556666568888877654332211 1234688999888888766542 1 38
Q ss_pred EEEeCCCCceeEEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe-------CC-----CC
Q 001386 558 VEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG-----GG 621 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~-----~~ 621 (1088)
.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++....... .. -.
T Consensus 233 ~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~ 311 (781)
T 3v9f_A 233 ALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLS 311 (781)
T ss_dssp EEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBS
T ss_pred heECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCC
Confidence 99998777554322111 11235688888877765 5566665678899987765432211 00 11
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcc
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 701 (1088)
...|.++...++|. |-+|+.++-|..++........ ... .+ ..
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~----------------------~~--- 354 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP----------------------TQ--- 354 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC------------------------------------C---
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc----------------------cc---
Confidence 23467788888776 4456666677777765432110 000 00 00
Q ss_pred cccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCC
Q 001386 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQP 781 (1088)
Q Consensus 702 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 781 (1088)
..+.......|.+++..++|. +..++.++-+..|+...... ..+.
T Consensus 355 -------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~--------~~~~- 399 (781)
T 3v9f_A 355 -------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA--------IYNK- 399 (781)
T ss_dssp -------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE--------ECC--
T ss_pred -------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE--------EEcc-
Confidence 000001234578888888877 44555455566666432111 0000
Q ss_pred CCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEec--CCCCCeEEEEEcCCCCcEEEEEe
Q 001386 782 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~ 859 (1088)
.+.......|.+++..++|.+.+...++.+..++..+++...... .....|.++...+ ++.+. .|+
T Consensus 400 ----------~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lw-igt 467 (781)
T 3v9f_A 400 ----------ENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIW-IGT 467 (781)
T ss_dssp --------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEE-EEE
T ss_pred ----------CCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEE-EEE
Confidence 000114567899999888887775556778999987765433221 2346789999887 56544 455
Q ss_pred CCCeEEEEEcCCceeeeeeccc-----cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCC
Q 001386 860 DDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
. +-|..||..+++........ ...|.++...++|.+.+....+| |..||..+++... +....+. ....
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~l--~~~~ 540 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEGF--CSNT 540 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTTC--SCSC
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCCC--CCCe
Confidence 5 55899998876543322212 46799999999998776543345 7788887654222 2211221 1246
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecC---CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001386 935 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~ 1011 (1088)
|.++...++|++.+++.+|-+..||..+++... +... ....|.++...++|.+.++ +.+| |..++..++... .
T Consensus 541 i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~ 616 (781)
T 3v9f_A 541 INQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-T 616 (781)
T ss_dssp EEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-E
T ss_pred eEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-E
Confidence 899999999998887765544889988765332 2211 1346788888888886664 4455 777888776543 3
Q ss_pred eccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
+....-++.. .....++...+ +|. |..|+.+| +..++...
T Consensus 617 ~~~~dGl~~~----~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 617 YDHSNNIPQG----SFISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp ECGGGTCCSS----CEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred ecccCCcccc----ccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 3322222211 22234566676 666 55577777 55666643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=167.89 Aligned_cols=250 Identities=10% Similarity=-0.007 Sum_probs=173.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+|...+..++|||||++++.+.+.+| +|++||+.+|+.+... + ....+..++|+||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~------------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV------------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE------------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc------------------c--cCcccceEEEEeC
Confidence 45557889999999995444433333 8999999999866420 1 1123667999999
Q ss_pred CCEEEEEeCCCE----------------EEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeC-----CC
Q 001386 408 GSLLGVAYSKHI----------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK 465 (1088)
Q Consensus 408 g~~las~~~dg~----------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-----d~ 465 (1088)
|+.|+.++.++. |++|++.+++... .......|...+..++|+|||+. |+.++. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence 999999987765 9999998875321 11122235566889999999995 444432 56
Q ss_pred cEEEEeCCC------Cc-eeEEeccCCccEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCc--eEEecCCCC--
Q 001386 466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPGL-- 530 (1088)
Q Consensus 466 ~i~vwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~-- 530 (1088)
.|.+||+.+ +. ....+..+...+... +++ +|..|+..+.. +.|.+||+.+... ...+..+..
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999987 53 456666666665543 443 44455544432 3699999987652 233333333
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWD 606 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd 606 (1088)
.+..++|++++.++++... ++...|++|++.+|+.++.+..+. ..+..+.++|+++.++... ..+.|+.||
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 6778899877777766654 345678999988888777777665 7788899999988776432 457899999
Q ss_pred cCCCe
Q 001386 607 MNKVQ 611 (1088)
Q Consensus 607 ~~~~~ 611 (1088)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 98877
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-13 Score=146.48 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=177.3
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~ 75 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHC 75 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceee
Confidence 34445666666688999999999877889999999999999887 322 334667899999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEE----e-------------CCC
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITC----G-------------DDK 465 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~----s-------------~d~ 465 (1088)
++|+|+++++...++.|.+||..+++.........+ ....+..++++|+|+ ++++. + ..+
T Consensus 76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 76 LNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp ECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCc
Confidence 999999888877778999999988764321111111 123567899999998 66763 2 123
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC-CCCc---eEEecCCCCceEEEEEccCC
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~g 541 (1088)
.|..+|.. ++ +..+..+......++| +++++.+++.+.++.|.+|++. .+.. ...+......+..++++++|
T Consensus 154 ~l~~~~~~-g~-~~~~~~~~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 154 WVFRLAPD-GT-LSAPIRDRVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG 229 (296)
T ss_dssp EEEEECTT-SC-EEEEECCCSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred EEEEECCC-CC-EEEeecCCCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence 56666644 44 4445556667788888 4567777778888999999997 3332 22333334456789999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE-eCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
+..++. .+.|.+||.. ++.+..+..+. . +.+++| .|+++.|++++.+ .+..++..+.+.
T Consensus 230 ~l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 230 LIWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp CEEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred CEEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 876665 2349999986 77777887766 4 888899 5888989988875 455556655443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-13 Score=149.24 Aligned_cols=220 Identities=15% Similarity=0.121 Sum_probs=152.9
Q ss_pred CeeEEEEecCCCEEEEEe-C---Cc--EEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC------------
Q 001386 800 AVPCFALSKNDAYLFSAS-G---GV--ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD------------ 861 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-d---g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------------ 861 (1088)
.+..++|||||+.|+..+ + +. |.+|++.+++.......+. +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467899999999999886 2 33 8888998887665554333 99999999 78888877632
Q ss_pred ---------------CeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC-------cEEEEEcCCCceeee
Q 001386 862 ---------------STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA-------QIFVWDVDGWGIQTC 919 (1088)
Q Consensus 862 ---------------g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg-------~i~iwd~~~~~~~~~ 919 (1088)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.++ ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999999887555554 3 78999999999 877776542 4455555543321
Q ss_pred eeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eC--------CeEEEEEcCcceeeeeeecCCCcCEEE-EEEeeCCCEE
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE--------THLAIYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMV 989 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l 989 (1088)
.+... . .+..+ ||||++|+.. .+ ..|.+|| +++. ..+..+|...+.. +.|+ || ++
T Consensus 212 -~l~~~---~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 212 -KMFEK---V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp -EEEEE---E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred -EeccC---c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence 12111 1 24444 9999998874 22 3688888 5554 3445566778886 9999 98 88
Q ss_pred EEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcE-EEEeCC
Q 001386 990 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV-YVIEPN 1057 (1088)
Q Consensus 990 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v-~~w~l~ 1057 (1088)
++++.++.+++| +.+++...... .. ....+++|+| .++++++.++.. .+|.+.
T Consensus 277 ~~~~~~~~~~l~-~~~g~~~~~~~------~~-----~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEIKPIAK------GR-----HWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEETTEEEEE-EESSSEEEEEC------SS-----SEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEecCCcEEEE-EcCCceEEEec------CC-----CeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999999 88666533221 01 1235678887 577777777765 777664
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=167.47 Aligned_cols=249 Identities=11% Similarity=-0.000 Sum_probs=167.7
Q ss_pred cCCCCCeEEEEECCCCCEEEEE-----eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc-
Q 001386 393 RDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT- 466 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~~las~-----~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~- 466 (1088)
.+|...+..++|||||++||.+ +.+..|++||+.+|+.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3566789999999999999954 34568999999999754110 12111 126789999999 6777777765
Q ss_pred ------------EEEEeCCCCce----eEEeccCCccEEEEeeeeeCCceEEEEEecCC----eEEEEECCCCCceEEec
Q 001386 467 ------------IKVWDAVTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYD 526 (1088)
Q Consensus 467 ------------i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 526 (1088)
|++|++.++.. +.....|...+..+.+ ++||++|+..+.++ .|.+|+..++.. ..+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence 99999998862 3333345567777777 56778888877666 677776544433 3333
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce---eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEE
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1088)
.+...+....+ ++|. ++..+.....+..|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..+
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 34444555555 6777 665554333467899999988753 33333331 2467888888 667788888999888
Q ss_pred EEEcC-CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC----CCcEEEEeCCCCC
Q 001386 604 IWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1088)
Q Consensus 604 iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1088)
+|.+. +++....+..+. ...+..++++|++..++.... .++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88654 455555554331 224667888999987774433 4789999998765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-13 Score=141.61 Aligned_cols=247 Identities=8% Similarity=-0.009 Sum_probs=180.1
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-CCe
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 885 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~-~~V 885 (1088)
.+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 8999999999999999998776 5789999999 888888 45788999998 899999888753 478
Q ss_pred eEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecC-CCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCc
Q 001386 886 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 962 (1088)
Q Consensus 886 ~~l~~s~dg~~las~s~-Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~ 962 (1088)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .++.. ....+++.++|+++++. .++.|..||.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~---~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHA---QFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGG---SCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccc---cccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777763 432222222111 11111 34567889999999985 67899999998
Q ss_pred ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEE
Q 001386 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1042 (1088)
Q Consensus 963 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l 1042 (1088)
|+.+.++... ..+.++.+.++|..+++++.++.|..+|..+|+.+.++....... . .-.++..++..+ +|+++
T Consensus 155 G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~-~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG-V---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS-C---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC-c---cccccccceEcC-CCCEE
Confidence 9988876542 445667889999999998888899999999999998886322111 0 113456778888 78888
Q ss_pred EEEeCC--------CcEEEEeC-CCCCCCccccCCCCc
Q 001386 1043 AVGLTN--------GEVYVIEP-NEPGDTWAVLPPDEI 1071 (1088)
Q Consensus 1043 ~~~~~d--------g~v~~w~l-~~~~~~~~~~~~~~~ 1071 (1088)
++.... +..+++++ .+.+..|.......-
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 877421 23456666 355666765444443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-12 Score=139.27 Aligned_cols=204 Identities=13% Similarity=0.069 Sum_probs=142.9
Q ss_pred eeEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeee
Q 001386 801 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 876 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~~ 876 (1088)
...++++|||+++.++. ++.|.++|+.+++.+.++..... ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44588999999888775 47899999999999998864331 233433 566777888899999999876 55432
Q ss_pred eeccc----cCCee-EEEEC-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCccCCCCeEEEEEcCCC
Q 001386 877 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 944 (1088)
Q Consensus 877 ~l~~h----~~~V~-~l~~s-~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~fs~dg 944 (1088)
....+ ..++. ...|. ++|++++ .+.+|.|.+.|+.++.......+... .+... +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 22111 12221 24554 6776555 66689999999987643222222211 11111 234568889999
Q ss_pred CEEEEEe-----------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEE
Q 001386 945 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 945 ~~l~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~ 1011 (1088)
+.+.+.. .+.|.++|+.+++.+..+..+ ..+..++||+|++ +|+++. .++.|.|+|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 146999999999999987765 3678999999997 666654 589999999999999988
Q ss_pred ec
Q 001386 1012 IL 1013 (1088)
Q Consensus 1012 ~~ 1013 (1088)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 86
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-12 Score=137.70 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=141.5
Q ss_pred eEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 802 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
..++++|||++|++++ ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||.+.++|. +++.+..
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4688999999998875 36799999 99998877 65332 24555645567777888999999999 8876633
Q ss_pred ec-----cccCC-eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----ccCCCCeEEEEEcCCCCEE
Q 001386 878 LE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 878 l~-----~h~~~-V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~fs~dg~~l 947 (1088)
.. ....+ .....+++++..++..+..+.+.+.|+.+........+...... .........++|+||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 21 11122 13356677776655556788999999976542222222211110 0001234458899999988
Q ss_pred EEEe-----------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEEe
Q 001386 948 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 948 ~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~~ 1012 (1088)
.++. ++.|.++|+.+++.+..+..+ ....+++|+|||+ .++++. .++.|.|||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8742 257999999999999887543 3688999999999 677776 5899999999999999874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-13 Score=145.89 Aligned_cols=278 Identities=10% Similarity=-0.012 Sum_probs=190.9
Q ss_pred ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce
Q 001386 355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434 (1088)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 434 (1088)
.+++|.+||..+++........ .. -.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~----------~n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR----------AN---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH----------HH---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhhHhh----------hc---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999999865431000 00 01122456778874 455555666678999999999986653
Q ss_pred eEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC-----ccEEEEeeeeeCCceEEEEEe-cC
Q 001386 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 508 (1088)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 508 (1088)
+. .......++++++++ ++++...++.|.+||+.+++....+.... .....+++ . ++..+++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 33 346788999999985 56666578999999999999887776433 13445555 2 444555544 48
Q ss_pred CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC------ceeEEEEeCCCCceeEEEeccccccccEE
Q 001386 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 582 (1088)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 582 (1088)
+.|.++|..+.+....+... .....++++|+|++++++..+... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 99999999988776665543 345678999999976665432110 2579999999998887775432 13678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEE----eCCCcEEEEeCCCCCcc
Q 001386 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV 657 (1088)
Q Consensus 583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~ 657 (1088)
.++++|+++.++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 89999998887642111111112457899999 56666665 568899999998 7666
Q ss_pred cccc
Q 001386 658 DAAG 661 (1088)
Q Consensus 658 ~~~~ 661 (1088)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=142.68 Aligned_cols=273 Identities=8% Similarity=0.024 Sum_probs=184.8
Q ss_pred ccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCC
Q 001386 705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHG 784 (1088)
Q Consensus 705 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 784 (1088)
+.++++.++|....+....................+++. +++.+++...++.+.+||..+.+.
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------- 76 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------- 76 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE----------------
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE----------------
Confidence 346788888876433211110000011122345667774 455556666678899987654322
Q ss_pred CcceeeccCCCCCCCCeeEEEEecCCCEEEEE-eCCcEEEEEcCCceeEEEecCCC-----CCeEEEEEcCCCCcEEEEE
Q 001386 785 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVIAIG 858 (1088)
Q Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg 858 (1088)
+.+.. ....+..++++++++.+++. .++.|.+||..+++....+.... .....+++ . +++++++.
T Consensus 77 --~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~ 147 (328)
T 3dsm_A 77 --VGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNC 147 (328)
T ss_dssp --EEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEE
T ss_pred --EEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEc
Confidence 22221 24567899999999655555 37899999999999887766333 14556777 3 56666655
Q ss_pred e-CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeecCCC
Q 001386 859 M-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQTPDG 927 (1088)
Q Consensus 859 ~-~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~D----------g~i~iwd~~~~~~~~~~~~~~~~~ 927 (1088)
. .++.|.++|+.+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+....+
T Consensus 148 ~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g 224 (328)
T 3dsm_A 148 WSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLG 224 (328)
T ss_dssp CTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTT
T ss_pred CCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCC
Confidence 4 4889999999999988877653 345789999999988777655 789999998865332 2222222
Q ss_pred CccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeee-eecCCCcCEEEEEEeeC-CCEEEEE----eCCCcEEEE
Q 001386 928 VMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSCD-CRMVFTS----FVDGTLSIH 1001 (1088)
Q Consensus 928 ~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~l~fs~d-g~~l~s~----s~dg~v~vw 1001 (1088)
. ....++|+||+++|.++.. .|.+||..+++.... +...+......++++|+ +...++. ..++.|.+|
T Consensus 225 ~-----~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 225 D-----WPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp C-----CCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred C-----CceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 1 3689999999999988655 999999998886432 22222467899999995 5555555 568999999
Q ss_pred EcCCCceEEEec
Q 001386 1002 EASNLEVQCRIL 1013 (1088)
Q Consensus 1002 d~~~~~~~~~~~ 1013 (1088)
|.. |+++.++.
T Consensus 299 d~~-g~~~~~i~ 309 (328)
T 3dsm_A 299 SPQ-GKLIDEFY 309 (328)
T ss_dssp CTT-CCEEEEEE
T ss_pred CCC-CCEEEEEE
Confidence 998 99888876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-11 Score=131.67 Aligned_cols=285 Identities=11% Similarity=0.051 Sum_probs=195.0
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
+..+...+.+++++|+|+ ++++...++.|.+||.. ++.... . ...+...+.+++++++|.
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 344556899999999998 56666667899999988 543221 0 222457899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE-eccCCccE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 488 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~~v 488 (1088)
++++...++.|..||.. ++ +... .+......+..+++.++|+ ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999986 33 2211 2223456789999999998 6777767889999998 6654432 23344567
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE-ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
..+++ ++++.+.++...++.|..||. +++.... .......+..++++++|+..++.. ..+.|..||. +++.
T Consensus 144 ~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITL--GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCE
T ss_pred ceEEE--cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcE
Confidence 88887 456677777777789999998 4443332 333445688999999998665542 2446999998 6664
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
.. +.... ....+..++++++|+.+++...++.|..||. +++ +..+........+.++++ +++++.++.. .+.+.
T Consensus 216 ~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIPT-PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECCC-CCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 43 32211 1357889999999986666657889999998 454 334433333345788999 8888776655 56677
Q ss_pred EEeCCCC
Q 001386 648 ILETPES 654 (1088)
Q Consensus 648 iwd~~~~ 654 (1088)
.++..++
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-12 Score=136.79 Aligned_cols=245 Identities=12% Similarity=0.105 Sum_probs=179.4
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC-CCeEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~las~~~dg~i~vwd~~~ 427 (1088)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999998765 33343 4688999999999998 35778999999 7
Q ss_pred CCcccceeEeccC-CCCEEEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEeccCC------ccEEEEeeeeeCCc
Q 001386 428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHG------APVYSLCPHAKENI 499 (1088)
Q Consensus 428 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~ 499 (1088)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.... .....+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 77655 34443 34688999999999 7777776 778888884 788877764211 12222333 5688
Q ss_pred eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccc--
Q 001386 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 577 (1088)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 577 (1088)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 88877776653 4556788899999987653 446999999999999988754311
Q ss_pred -cccEEEEEEeCCCCEEEEEeCC--------CcEEEEEc-CCCeeeEEEeCCCCCCCCceEE
Q 001386 578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
-..+..+...++|+.+++.+.. +..+++.+ .+|+.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1337788888999888887421 23345555 4678877777665555555553
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-11 Score=135.85 Aligned_cols=282 Identities=12% Similarity=-0.006 Sum_probs=186.4
Q ss_pred eecCCCCeEEEEEc-ccC---cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-
Q 001386 341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1088)
Q Consensus 341 ~~spdg~~lla~g~-~dg---~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~- 415 (1088)
...|++++++++.. ... +|.++|..+++.+.. +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44578875444433 223 889999999987654 2212233 899999999999886
Q ss_pred ---------CCCEEEEEEccCCCcccceeEe-ccC---CCCEEEEEecCCCCcEEEEEEeC--CCcEEEEeCCCCceeEE
Q 001386 416 ---------SKHIVQLYAYHGGSDARQQLEI-DAH---VGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 416 ---------~dg~i~vwd~~~~~~~~~~~~~-~~h---~~~v~~~~~s~d~~~l~l~s~s~--d~~i~vwd~~~~~~~~~ 480 (1088)
.++.|.+||..+.+.+..+..- ..+ ......++|+|||+ +|+.+.. ++.|.++| .+++.+.+
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 3678999999987765533211 000 12345899999999 4555442 57899999 99998877
Q ss_pred -eccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-----CCCCc-eEEEEEccCCCEEEEEeeCCCC
Q 001386 481 -FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 481 -~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
+.... . +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~~~~-~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLSSPT-C---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcCCCc-e---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 65322 2 23333332 45677788999999999 665542221 11112 233566777666555443
Q ss_pred ceeEEEEeCCCCc--eeEEEeccc-------cccccEEEEEEeCCCCEEEEEeC----------CCcEEEEEcCCCeeeE
Q 001386 554 ESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 554 ~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~ 614 (1088)
.+.+.+.|..++. .+..+.... ........+.++|+++.++++.. .+.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 3458889987553 222222110 00122445788999998888653 3579999999999999
Q ss_pred EEeCCCCCCCCceEEEecCCC-EEEEEe-CCCcEEEEeCCCCCcccc
Q 001386 615 TIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 659 (1088)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~ 659 (1088)
.+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 997544 368999999999 777776 489999999999887765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-11 Score=129.81 Aligned_cols=279 Identities=10% Similarity=0.075 Sum_probs=192.9
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
....+.+++++++|..+++...++.+.+|+.. +. ......+ .....+.+++++++|.+
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------------------~~~~~~~--~~~~~~~~i~~~~~g~l 70 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------------------ITEYPLP--TPDAKVMCLTISSDGEV 70 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------------------EEEEECS--STTCCEEEEEECTTSCE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------------------eEEecCC--cccCceeeEEECCCCCE
Confidence 44678999999999977776667888888754 21 1111111 13467889999999998
Q ss_pred EEEEe-CCcEEEEEcCCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eeccccCCeeEEE
Q 001386 813 LFSAS-GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLV 889 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~-~l~~h~~~V~~l~ 889 (1088)
+++.. ++.|..||.. ++. ...+......+.++++++ +++++++...++.|.+||. +++... .+..+...+.+++
T Consensus 71 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 71 WFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE
Confidence 88776 6889999986 332 222223456789999999 7888887777889999998 555432 2333456789999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeee
Q 001386 890 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 890 ~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~ 968 (1088)
++++|+++++...++.|..||. +++... +...... ..+..++++++|++.++. .++.|.+||. +++....
T Consensus 148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 148 LGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTPA----SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF 218 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSSTT----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred EcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCCC----CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE
Confidence 9999998887777788999998 544322 1111111 247899999999977775 4678999999 6664433
Q ss_pred eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001386 969 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1048 (1088)
Q Consensus 969 ~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d 1048 (1088)
....+...+.+++++++|...++...++.|.+||. ++... .+.. +.. .-.+.++++ + ++.++++.. .
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~----~~~----~~~~~~i~~-~-~g~l~v~~~-~ 285 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPI----QIK----SAEPHGICF-D-GETIWFAME-C 285 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEEC----SSS----SCCEEEEEE-C-SSCEEEEET-T
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeC----CCC----CCccceEEe-c-CCCEEEEec-C
Confidence 23345678999999999997776657889999998 45432 2221 111 123566777 6 677666554 6
Q ss_pred CcEEEEeCCC
Q 001386 1049 GEVYVIEPNE 1058 (1088)
Q Consensus 1049 g~v~~w~l~~ 1058 (1088)
+.+..+++..
T Consensus 286 ~~l~~~~~~~ 295 (299)
T 2z2n_A 286 DKIGKLTLIK 295 (299)
T ss_dssp TEEEEEEEC-
T ss_pred CcEEEEEcCc
Confidence 7888887754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-12 Score=136.97 Aligned_cols=314 Identities=9% Similarity=0.018 Sum_probs=202.0
Q ss_pred eeeCCceEEEEEec-----CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC------CCCceeEEEEeC
Q 001386 494 HAKENIHFIFSISV-----DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS------KEGESFLVEWNE 562 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~ 562 (1088)
.+.++++.++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++..- ++.++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34567777777655 689999999998888777655555 3 9999999999887521 112467999999
Q ss_pred CCCceeEEEecccc----ccccEEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE
Q 001386 563 SEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
.+++.+..+..... .......+.|+|||++++++.. ++.|.++|+.+++.+.++...+. ...+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce
Confidence 99999888754210 0124556899999999998864 68999999999999999975321 2334445567
Q ss_pred EEEEeCCCcEEEEeCCC-CCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccc
Q 001386 637 LAVIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 715 (1088)
+++.+.||.+.+.++.+ ++...... .+.+.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~-------------------------------------------------~~~~~ 222 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHT-------------------------------------------------EVFHP 222 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEEC-------------------------------------------------CCCSC
T ss_pred eEEECCCCCEEEEECCCCCeEEEeec-------------------------------------------------ceecc
Confidence 77888899999988875 33211000 00000
Q ss_pred cccCCCcceeeecCCccccccEEEEEEe-cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCC
Q 001386 716 LFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD 794 (1088)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1088)
. ........+|. ++|+.++ .+.+|.+.+.|+....... ..-|++-... ....
T Consensus 223 ~----------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v-----~~~~~~~~~~-----~~~~ 275 (386)
T 3sjl_D 223 E----------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF-----LPAVEALTEA-----ERAD 275 (386)
T ss_dssp T----------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE-----CCCEESSCHH-----HHHT
T ss_pred c----------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee-----ecceeccccc-----cccc
Confidence 0 00000011343 5665444 4446788888765443200 0001100000 0000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeC-----------CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEEE-eCC
Q 001386 795 SNSQEAVPCFALSKNDAYLFSASG-----------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIG-MDD 861 (1088)
Q Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg-~~d 861 (1088)
.-.......++++++++.+.+... +.|.++|+.+++.+..+... ..+..+++++ |++ +|++. ..+
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~-D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ-DEKPLLYALSTGD 353 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECS-SSSCEEEEEETTT
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECC-CCCeEEEEEcCCC
Confidence 001223345788999998888641 46999999999999887632 3678999999 665 66654 458
Q ss_pred CeEEEEEcCCceeeeeeccccCCeeEEEECCC
Q 001386 862 STILIYNARSSEVISKLEGHSKRVTGLVFSDA 893 (1088)
Q Consensus 862 g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d 893 (1088)
+.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 354 ~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 354 KTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 99999999999999888743 33455677766
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=164.34 Aligned_cols=249 Identities=9% Similarity=-0.066 Sum_probs=164.3
Q ss_pred cCCCCceeeeecCCCCeEEEE----EcccCcEEEEecCCCcce-eeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLV----GTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~----g~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
+|...+..++|||||++++.+ |+.+.+|++||+.+|+.+ .. . +.+. ....++|+|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 566679999999999954433 333468999999999865 21 0 1111 126789999
Q ss_pred CCCEEEEEeCCCE-------------EEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC----cEE
Q 001386 407 DGSLLGVAYSKHI-------------VQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 468 (1088)
Q Consensus 407 dg~~las~~~dg~-------------i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~----~i~ 468 (1088)
||+.|+.++.+.. |++|++.++... ..+.....|...+..++|+|||+. |+.++.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988776 999999987632 122233346668899999999995 44444444 677
Q ss_pred EEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe---cCCeEEEEECCCCCc---eEEecCC-CCceEEEEEccCC
Q 001386 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 541 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~v~~~~~s~~g 541 (1088)
+||..+++ ...+..+...+....+ . +|.+++... .++.|.+||+++... ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~--~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA--W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE--E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe--c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4455555555555544 2 444444444 258899999987653 3333333 4467788888 66
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCee
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1088)
..+++... ++...|.+++.. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66666554 334556666754 55555555442 25677788899998777433 347899999988774
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=139.26 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=168.5
Q ss_pred ecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667788999999998 7778888999999999886 33 4556778899999999998 67777667899999
Q ss_pred eCCCCceeEEeccC----CccEEEEeeeeeCCceEEEEEec-----------------CCeEEEEECCCCCceEEecCCC
Q 001386 471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 529 (1088)
Q Consensus 471 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 529 (1088)
|..+|+........ ...+..+++ +++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888865443221 123456666 557778877321 2345555444 3344444555
Q ss_pred CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCce---eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001386 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 530 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1088)
.....++|+|+|+.+++.. ..+.|++|++. +++. ...+.. ....+..++++++|+.+++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 5678999999999994432 24569999986 5554 333322 23556789999999866655 7899999
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEE-ecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 986 777777775543 788999 58999898888764 444455543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-12 Score=137.93 Aligned_cols=239 Identities=11% Similarity=0.026 Sum_probs=167.1
Q ss_pred CeeEEEEecCCCEEE-EEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 800 AVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999777 433 68899999766543322223335678999999 777666555 88999999876544322
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEE
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 956 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~ 956 (1088)
.......+.+++++++|+++++...++.|.+|+..+..... ....+ . ..+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----~~~~~-~---~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----LPFTG-L---NDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE----CCCCS-C---CSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe----ecccc-C---CCceeEEEeCCCCEEEEECCCCEEE
Confidence 22233568999999999988887778889999765532111 11111 1 246789999999977775 467999
Q ss_pred EEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECC
Q 001386 957 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1036 (1088)
Q Consensus 957 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1036 (1088)
+||..++..... ...+...+..++++++|..+++...++.|.+|+..+..... .. .. ....+.+++++|
T Consensus 175 ~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~~---~~~~p~~i~~~~ 243 (270)
T 1rwi_B 175 KLEAESNNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------FT---GLNTPLAVAVDS 243 (270)
T ss_dssp EECTTTCCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------CC---SCSCEEEEEECT
T ss_pred EEecCCCceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------cC---CCCCceeEEECC
Confidence 999887665433 22334678999999999777777778899999987654332 11 00 113467899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1037 LKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1037 ~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
+|+++++...++.|.++++...+
T Consensus 244 -~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 -DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECCCGGG
T ss_pred -CCCEEEEECCCCEEEEEcCCCcc
Confidence 78999999999999999997654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-08 Score=119.53 Aligned_cols=555 Identities=12% Similarity=0.039 Sum_probs=317.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEec-------cCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------AHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~-------~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
...|.+|.-.++|. |-.|+.+| +..||-.. ++...... -....|.++...++|. .|..++.++-+.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl~ 90 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGLN 90 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCC--EEEEEeCCCCcc
Confidence 46899999988874 66777888 67777432 22111100 1124589998888776 255566665699
Q ss_pred EEeCCCCceeEEe-c---c---CCccEEEEeeeeeC--CceEEEEEecCCeEEEEECCCCCceEEec-----CCCCceEE
Q 001386 469 VWDAVTGSRTYSF-E---G---HGAPVYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLGCTR 534 (1088)
Q Consensus 469 vwd~~~~~~~~~~-~---~---~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~ 534 (1088)
.||..+++..... . . ....|.++.. +. ++ .|..++.++.|..+|..+........ .....|.+
T Consensus 91 ~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~--d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 167 (781)
T 3v9f_A 91 AYNYETQSFSVYQYNPEDPQSLITNDVTHITS--SVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWT 167 (781)
T ss_dssp EEETTTTEEEEECCCTTCSSSCSCSCEEEEEE--CSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEE
T ss_pred eECCCCCeEEeeccccCCCCCcccCcceEEEe--cCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEE
Confidence 9998877654321 1 0 1235777765 33 44 45556655568888876554332211 12345788
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+...++|...+... ..-|..+|..+++........ ......|.++...+++...+ ++.+ .+.+||..++
T Consensus 168 i~~d~~g~lwigt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 168 ATEAEDGKLYIGHV-----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTE 240 (781)
T ss_dssp EEEEETTEEEEEET-----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTT
T ss_pred EEECCCCCEEEEec-----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCC
Confidence 88888887666432 112888998877653321110 01125688888888776554 4555 6899998776
Q ss_pred eeeEEEeCC-----CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccC
Q 001386 611 QLLTTIDAG-----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1088)
Q Consensus 611 ~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 685 (1088)
+........ -....|.++...++|. |.+|+..+-|.+++..+..........-..+ .
T Consensus 241 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~-----~------------ 302 (781)
T 3v9f_A 241 TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFI-----R------------ 302 (781)
T ss_dssp EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEE-----C------------
T ss_pred cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccc-----c------------
Confidence 544322111 1123577888877775 4556665667888876543211000000000 0
Q ss_pred CceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
+ . ..+.......|.++....+|. +-.++.++-+..++...
T Consensus 303 ----------------------------~-----~------~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~ 342 (781)
T 3v9f_A 303 ----------------------------E-----G------DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAP 342 (781)
T ss_dssp ----------------------------B-----C------SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSC
T ss_pred ----------------------------C-----C------CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCC
Confidence 0 0 000011345688888888887 55555555566665432
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEe---cCCCCCe
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI---MPPSPTA 842 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i 842 (1088)
... +.+...... ..........|.+++..++|.+.+...++.|..|+..++....-. ......|
T Consensus 343 ~~~--------~~~~~~~~~-----~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 343 PTF--------HTWSYSPTQ-----MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp CSC--------EEEC----C-----CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred Ccc--------eeeccCccc-----cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence 211 111100000 000011345789999999888776655777999998765432211 1234678
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~ 920 (1088)
.+++..+ ++.+. +|+.++-+..++..+++...... .....|.++...++|.+.+. +.. -|..+|..+++....
T Consensus 410 ~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~- 484 (781)
T 3v9f_A 410 LCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THA-GVFVIDLASKKVIHH- 484 (781)
T ss_dssp EEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETT-EEEEEESSSSSCCEE-
T ss_pred EEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECC-ceEEEeCCCCeEEec-
Confidence 9999887 56544 47777779999988776533221 13467999999888876654 444 488999887553221
Q ss_pred eeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecC---CCcCEEEEEEeeCCCEEEEEeCCCc
Q 001386 921 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGT 997 (1088)
Q Consensus 921 ~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~s~dg~ 997 (1088)
............|.++...++|++.+.+.++.+..||..+++... +... ....|.++...++|...++ +.+|.
T Consensus 485 --~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Gl 560 (781)
T 3v9f_A 485 --YDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGEGL 560 (781)
T ss_dssp --ECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETTEE
T ss_pred --ccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECCCc
Confidence 111111111246899999999998888776668889987765432 2211 1467899999889886664 45665
Q ss_pred EEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 998 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
|..||..++... .+.....++.. .+ .++..++ +|.+.++ +..| |..++..
T Consensus 561 v~~~d~~~~~~~-~~~~~~gl~~~----~i--~~i~~d~-~g~lW~~-t~~G-l~~~~~~ 610 (781)
T 3v9f_A 561 VCFPSARNFDYQ-VFQRKEGLPNT----HI--RAISEDK-NGNIWAS-TNTG-ISCYITS 610 (781)
T ss_dssp EEESCTTTCCCE-EECGGGTCSCC----CC--CEEEECS-SSCEEEE-CSSC-EEEEETT
T ss_pred eEEECCCCCcEE-EccccCCCCCc----eE--EEEEECC-CCCEEEE-cCCc-eEEEECC
Confidence 588998877643 22222222221 22 4566776 6665554 4444 6666664
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-12 Score=135.60 Aligned_cols=241 Identities=8% Similarity=-0.045 Sum_probs=166.1
Q ss_pred CceeeeecCCCCeEEE-EEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla-~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 678999999998 666 556778999999766543211 11233567889999999966665
Q ss_pred eCCCEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1088)
. ++.|.+||..++... .+. .....+..+++.++|+ ++++...++.|.+||..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 122 2335789999999998 6777777889999986655443322223335667777
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
+++|.++++...++.|.+||................+..++++++|...++... .+.|.+|+..+.........
T Consensus 158 --~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 --DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp --CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred --eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 446677777777899999998776544433333356889999999966655432 44599999876544332212
Q ss_pred cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
. ...+.+++++++|+.+++...++.|++++....+.
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 2 24688999999999888888899999999876543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-12 Score=158.80 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=164.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~-- 466 (1088)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999988654 4699999999975431 112222357899999 8 5555555543
Q ss_pred ------------EEEEeCCCCce--eEEec--cCCccEEEEeeeeeCCceEEEEEecCC-----eEEEEECCCC--CceE
Q 001386 467 ------------IKVWDAVTGSR--TYSFE--GHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 523 (1088)
Q Consensus 467 ------------i~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 523 (1088)
|++|++.++.. ...+. .+...+..+.| ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999987763 22333 33335777777 66888888877654 7999999876 3133
Q ss_pred EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 524 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
.+..+...+... ++|+|+.|+..+..+.....|++||+.++ .....+..+. ..+..+.+. ++..+++...|+.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343443344444 35999999988765444678999999885 3333443333 456777777 5567777888988
Q ss_pred EEEEEcC-CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC----CCcEEEEeCCCCC
Q 001386 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1088)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1088)
.++|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777554 456566665322 234677889999876664332 4789999998764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.4e-12 Score=137.36 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=143.6
Q ss_pred eEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee-
Q 001386 802 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 877 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~- 877 (1088)
..++++|||++++++. ++.|.+.|+.+++.+.++..... ....|.+.+.+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 3478899999888875 46899999999999988874321 233443446666777888888888866655422
Q ss_pred ---eccccCCe-eEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc-c---CCCCeEEEEEcCCCCEEEE
Q 001386 878 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 878 ---l~~h~~~V-~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~~~fs~dg~~l~~ 949 (1088)
+.....++ ..+.|++++..++..+..+.|.+.|+.+........+....... . .......++|+||++++.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23578999998888888899999999765432222222110000 0 0012234799999998777
Q ss_pred Ee-----------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEEe
Q 001386 950 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 950 ~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~~ 1012 (1088)
.. ++.|.++|+.+++.+..+..+ .....++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 347999999999999887643 3588999999999 888887 5899999999999999887
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-10 Score=123.20 Aligned_cols=279 Identities=10% Similarity=0.032 Sum_probs=191.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.....+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|.+.
T Consensus 17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~ 76 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIW 76 (300)
T ss_dssp STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEE
Confidence 3345889999999998 66666677999999987 553321 0 22344679999999999988
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeccCCccEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS 490 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~ 490 (1088)
++...++.|..||.. ++. .. ..+......+..+++.++|+ ++++...++.|..+|.. ++... .+......+..
T Consensus 77 v~~~~~~~v~~~d~~-g~~-~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGF-TE-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEETTTTEEEEECTT-SCE-EE-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEecCCCeEEEECCC-CCe-EE-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877678889999988 543 21 12333446789999999998 66766667899999987 66542 23334456778
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
+++ ++++.+.++...++.|..+|. .+.... ........+..++++++|+..++... .+.|..+|. +++...
T Consensus 151 i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 151 ITL--GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE 222 (300)
T ss_dssp EEE--CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEE--CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence 877 456676666666789999988 333322 22233456889999999976665432 445999998 555443
Q ss_pred E-EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 570 T-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 570 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
. .... ...+.++++.++|+..++...++.|..|+. +++.. .+........+.+++++++|++.++.. . .|..
T Consensus 223 ~~~~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 223 YDIPTP---NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGK 295 (300)
T ss_dssp EECSST---TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred EECCCC---CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence 2 2222 256889999999986666666789999998 45433 333332334578999999998666554 4 6666
Q ss_pred EeC
Q 001386 649 LET 651 (1088)
Q Consensus 649 wd~ 651 (1088)
++.
T Consensus 296 ~~p 298 (300)
T 2qc5_A 296 LNL 298 (300)
T ss_dssp EEE
T ss_pred eCC
Confidence 654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-10 Score=122.13 Aligned_cols=277 Identities=9% Similarity=0.046 Sum_probs=190.6
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
....+.++++.++|...++...++.+.+|+.. +. +.....+ .....+.+++++++|.+
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------------------~~~~~~~--~~~~~~~~i~~~~~g~l 75 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------------------IKEFEVP--TPDAKVMCLIVSSLGDI 75 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------------------EEEEECS--STTCCEEEEEECTTSCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------------------eEEEECC--CCCCcceeEEECCCCCE
Confidence 34578899999999977777778888888744 21 1111111 13457889999999998
Q ss_pred EEEEe-CCcEEEEEcCCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eeccccCCeeEEE
Q 001386 813 LFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLV 889 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~-~l~~h~~~V~~l~ 889 (1088)
+++.. ++.|..||.. ++... .+......+.++++.+ +++++++...++.|..||.. ++... .+......+.+++
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 87766 6789999988 55432 2222446789999999 78888877778899999987 65442 2333456789999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCcceeeee
Q 001386 890 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 890 ~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~-d~~i~vwd~~~~~~~~~ 968 (1088)
+.++|++.++...++.|..+|. +++... +..... . ..+..++++++|++.++.. .+.|.+||. +++....
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~-~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLEE---YPLPTN-A---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSST-T---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCCCC-C---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 9999997777766788999998 443221 221111 1 2578999999998887754 567999998 5554443
Q ss_pred eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001386 969 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1048 (1088)
Q Consensus 969 ~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d 1048 (1088)
....+...+.+++++++|+..++...++.|..|+. ++... .+.. +.. ...+.+++++| +|+++++.. .
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~----~~~----~~~~~~i~~~~-~g~l~v~~~-~ 291 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL----QTE----NAEPHGITFGK-DGSVWFALK-C 291 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC----CST----TCCCCCEEECT-TSCEEEECS-S
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC----Ccc----CCccceeEeCC-CCCEEEEcc-C
Confidence 33345677899999999997776666789999998 56543 2211 100 12355688898 677666554 4
Q ss_pred CcEEEEeC
Q 001386 1049 GEVYVIEP 1056 (1088)
Q Consensus 1049 g~v~~w~l 1056 (1088)
.|..+++
T Consensus 292 -~i~~~~p 298 (300)
T 2qc5_A 292 -KIGKLNL 298 (300)
T ss_dssp -EEEEEEE
T ss_pred -ceEEeCC
Confidence 7777765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=137.01 Aligned_cols=281 Identities=11% Similarity=0.088 Sum_probs=191.5
Q ss_pred CCCCeEEEEEccc----CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe----
Q 001386 344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1088)
Q Consensus 344 pdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~---- 415 (1088)
|++++++++...+ ++|.+.|..+++.+.+... -..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence 5677666666544 7999999999998865331 1234 799999999998876
Q ss_pred ------CCCEEEEEEccCCCcccceeEec--c---CCCCEEEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEEec
Q 001386 416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 416 ------~dg~i~vwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~l~l~s~s--~d~~i~vwd~~~~~~~~~~~ 482 (1088)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988766432 21 0 1123457899999994 55444 36789999999999998886
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE----ecCCCCc-eEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
.... ....+... ..+++.+.||.+.+.+....+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4321 22223322 4667777889888888854443321 1111122 123567999988877753 3469
Q ss_pred EEEeCCCCcee--EEEecc-----c--cccccEEEEEEeCCCCEEEEEeC----------CCcEEEEEcCCCeeeEEEeC
Q 001386 558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 618 (1088)
++.|...+... ..+... . ........++++|+++++++... ++.|.+.|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0 00011123689999998887642 35799999999999999876
Q ss_pred CCCCCCCceEEEecCCC-EEEEEe-CCCcEEEEeCCCCCccccc
Q 001386 619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 660 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1088)
... ...++|+|||+ ++++.. .++.|.++|..+++.+..+
T Consensus 369 g~~---P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GHE---IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE---ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCC---cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 542 57899999999 888888 5899999999999887664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=8e-12 Score=153.06 Aligned_cols=248 Identities=10% Similarity=0.004 Sum_probs=158.1
Q ss_pred cCCCCceeeeecCCCCeEEEEEccc----CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+|...+..++|||||++++.+.+.+ .+|++||+.+|+.+.. . . +...+..++|+||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 3444788999999999644443333 3599999999986542 0 0 1122356899999
Q ss_pred CCEEEEEeCCCE--------------EEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcE
Q 001386 408 GSLLGVAYSKHI--------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTI 467 (1088)
Q Consensus 408 g~~las~~~dg~--------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i 467 (1088)
+.|+.++.++. |++|++.++.... .......+...+..+.|||||+. |+..+.+ ..|
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTV 296 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceE
Confidence 99999876553 8999998775321 11122234346889999999994 4444433 489
Q ss_pred EEEeCCCC--ceeEEeccCCccEEEEeeeeeCCceEEEEEec----CCeEEEEECCCC--CceEEecCCCCceEEEEEcc
Q 001386 468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSA 539 (1088)
Q Consensus 468 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~ 539 (1088)
.+||+.++ ++...+..+...+.... . ++|..|+..+. ++.|.+||+++. .....+..+...+..++++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~- 372 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFV-D--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA- 372 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEE-E--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred EEEECCCCCCcccEEecCCCCceEEEE-e--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence 99999887 42455655554444443 2 34556666655 345999998874 2233344444456677776
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCe
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ 611 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~ 611 (1088)
++..+++... ++...|++++.. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++
T Consensus 373 ~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 373 GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4455555543 345567777764 55555555432 26788899999988666432 34789999998887
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-10 Score=126.00 Aligned_cols=251 Identities=13% Similarity=0.104 Sum_probs=164.9
Q ss_pred cccCCCCceeeeecCCCCeEEEE-------EcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~-------g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
+.+.-....+++|+++|. ++++ +..++.|.+||..+++...... ....++...+.++
T Consensus 13 ~~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------~~~~~~~~~~~~i 76 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGC 76 (314)
T ss_dssp EECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEE
T ss_pred hhccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------------cccCCCCCCCceE
Confidence 344444788999999998 6666 5667899999998887542100 0012244679999
Q ss_pred EECCC-CCEEEEEeCCCEEEEEEccCCCcccc-eeEecc-CCCCEEEEEecCCCCcEEEEEEeCC---------------
Q 001386 403 VWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD--------------- 464 (1088)
Q Consensus 403 ~~s~d-g~~las~~~dg~i~vwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d--------------- 464 (1088)
+++++ |+++++. ..+.|.+||.. ++.... .....+ ....+.++++.++|+ +.++...+
T Consensus 77 ~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 77 QCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSC
T ss_pred EEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCC
Confidence 99999 7655554 44479999998 653221 100011 124588999999998 56665544
Q ss_pred CcEEEEeCCCCceeEEeccCCccEEEEeee--eeCCceEEE-EEecCCeEEEEECC-CCCc-----eEEecCCC-CceEE
Q 001386 465 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFIF-SISVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTR 534 (1088)
Q Consensus 465 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~-s~~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~v~~ 534 (1088)
+.|..||.. ++..... .+......+++. .+++++.++ +...++.|.+||++ .+.. ...+..+. .....
T Consensus 153 ~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 230 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp EEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence 567778765 5544332 233345677774 115665554 44567999999986 2221 11222222 45788
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~ 609 (1088)
++++++|+..++... .+.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|++..
T Consensus 231 i~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 231 MDFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eEECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999988777543 3459999998788777776654 678999999999966554 4568899998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-10 Score=126.07 Aligned_cols=245 Identities=9% Similarity=0.056 Sum_probs=165.3
Q ss_pred cEEEEEEecCCceEEE-------eccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccC-CCCCCCCeeEEEEe
Q 001386 736 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPCFALS 807 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~-------~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s 807 (1088)
...+++|+++|..+++ ...++.|.+|+...+.. . ....+ ..++...+.+++++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------------------~-~~~~~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------------------T-VICKPEVNGYGGIPAGCQCD 79 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------------------E-EEECCEETTEECCEEEEEEC
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------------------E-EEEecccCCCCCCCceEEEe
Confidence 4578899999987777 56678888887543321 1 10000 00133568899999
Q ss_pred cC-CCEEEEEeCCcEEEEEcCCceeEEE-ecC----CCCCeEEEEEcCCCCcEEEEEeCC---------------CeEEE
Q 001386 808 KN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------STILI 866 (1088)
Q Consensus 808 ~d-g~~l~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~lasg~~d---------------g~i~l 866 (1088)
++ |+++++...+.|.+||.. ++.... ... +...+.++++++ +++++++...+ +.|..
T Consensus 80 ~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 80 RDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred cCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEE
Confidence 99 776666656689999998 665433 221 123578999999 78877776655 57888
Q ss_pred EEcCCceeeeeeccccCCeeEEEEC----CCCCEEEEE-eCCCcEEEEEcC-CCceeeeeeeecCCCCccCCCCeEEEEE
Q 001386 867 YNARSSEVISKLEGHSKRVTGLVFS----DALNILVSS-GGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQF 940 (1088)
Q Consensus 867 wd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~las~-s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~f 940 (1088)
|+.. ++... +..+......++|+ |+++.|..+ ..++.|.+||+. ++.......+....++.. ..+..+++
T Consensus 158 ~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~~i~~ 233 (314)
T 1pjx_A 158 FTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGADGMDF 233 (314)
T ss_dssp ECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEEEEEE
T ss_pred ECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCCceEE
Confidence 8766 55433 33344557889999 999765544 567899999987 443322223333332210 14678999
Q ss_pred cCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEE-eCCCcEEEEEcCCC
Q 001386 941 HKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1006 (1088)
Q Consensus 941 s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~-s~dg~v~vwd~~~~ 1006 (1088)
+++|+++++. .++.|.+||..+++.+..+. .+...+.+++|++||+.|+++ ..++.|..|++...
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999988885 67899999998787766543 455789999999999965544 45688999998753
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-10 Score=125.22 Aligned_cols=174 Identities=9% Similarity=0.065 Sum_probs=136.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCce-----------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
..+..+++++...++++|+...+.+|++.+.. ..... .+.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999997788889976443 11222 2445 999999 57888888 88999999
Q ss_pred EcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 868 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 868 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
|+.+.........|..++.++.+.+.. +++++.||.|.+||++++.... + . ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~------~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L------A---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E------E---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c------c---CCceEEEEcCCc-eE
Confidence 998876666677788889988887653 8889999999999999765321 1 1 259999999999 44
Q ss_pred EEEeCCeEEEEEcCccee--eeeee-----c---CCCcCEEEEEEeeCCCEEEEEe
Q 001386 948 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 948 ~~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
+...||++++|+...+++ .+.+. . +|...|.++.|.+++.++++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 457899999999888775 44431 1 4788999999999999988643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-10 Score=126.21 Aligned_cols=248 Identities=10% Similarity=-0.005 Sum_probs=165.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 875 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~~~ 875 (1088)
..+..++++++++++++.. ++.|++||..+++....... ..... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4577899999998766665 58899999998877655544 23333 99999 788888888766 8999998766543
Q ss_pred eee----ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC-CEEEE-
Q 001386 876 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-TRFLL- 949 (1088)
Q Consensus 876 ~~l----~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg-~~l~~- 949 (1088)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... ..+...++|+|++ .++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~-~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG-TNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC-CSSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC-CCccccEEEeCCCCEEEEEe
Confidence 333 224566889999995555555777889999999876522211110 111111 0011289999964 44444
Q ss_pred EeCCeEEEEEcCcceeeeeeecCC---------------CcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCceEEEec
Q 001386 950 VHETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 950 ~~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
...+.|+.|+.... +..+. ++ -.....++++++|.++++-+ .++.|+.|++.+|.......
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 35678999987643 22211 22 24588999999999777777 78999999988887543332
Q ss_pred cccccCCCCc-----cccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1014 STAYLRPTTS-----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1014 ~~~~~~~~~~-----~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
... ...... ..--.|..++++| ++.++++-..++.|+.+.+
T Consensus 363 ~~~-~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVD-VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTT-CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCC-CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 100 000000 0113578899999 6888888888889988875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=140.24 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=166.5
Q ss_pred cCCCCceeeeecCCCCeEEEEE----cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+|...+..++|||||++++.+. +...+|+|||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 4556788999999999644433 3335799999999986542 0 1 11113467899 9
Q ss_pred CCEEEEEeCCC-------------EEEEEEccCCCccc-ceeEecc-CCCCEEEEEecCCCCcEEEEEEe---CCCcEEE
Q 001386 408 GSLLGVAYSKH-------------IVQLYAYHGGSDAR-QQLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 469 (1088)
Q Consensus 408 g~~las~~~dg-------------~i~vwd~~~~~~~~-~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s---~d~~i~v 469 (1088)
|+.|+.++.+. .|++|++.++.... .+..... |...+..+.|+|||+.+ +++.+ .+..|.+
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998774 39999998765321 1112233 45567899999999963 33333 2358999
Q ss_pred EeCCCCc-eeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCc--eEEecCCCCceEEEEEccCCCE
Q 001386 470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 470 wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+|+.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455666666555544 3333 33455555444 6799999987654 234444555554 89999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC----CcEEEEEcCCCeee
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 613 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 613 (1088)
|+..... ++...|++|++.++. .+.+.... ...+..+.++++++.++....+ +.+..||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8887653 345679999988554 44443222 2467777788888877765544 88999999887643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-10 Score=124.10 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=163.7
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
.....|+|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 3678999999998 788888889999999988765532 111 22233 9999999999988
Q ss_pred eCCC--EEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE----eccCCcc
Q 001386 415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 487 (1088)
Q Consensus 415 ~~dg--~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~----~~~~~~~ 487 (1088)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 799999887654322211112 4567789999995553 44466788999999987764322 2222222
Q ss_pred E--EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC---------------CCceEEEEEccCCCEEEEEeeC
Q 001386 488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 488 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
- ..+++++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|++.++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888543 4567777778899999987654 2222221 12477899999999555532
Q ss_pred CCCceeEEEEeCCCCceeEEEeccc------------cccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
.+...|+.|+..++.. ..+.++. ..-.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0366799999877764 4444431 00145889999999877777778888888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.31 E-value=9.2e-10 Score=118.11 Aligned_cols=229 Identities=10% Similarity=0.055 Sum_probs=151.2
Q ss_pred cEEEEEEecCCce-EEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 736 KISRLTYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 736 ~i~~~~~s~~g~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
-..+.+|++++.. +++...++.|..|+...+.. .... ....+.+++++++|++++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------------------~~~~-----~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------------------QRVT-----MDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------------------EEEE-----CSSCEEEEEEBTTSSEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------------------EEEe-----CCCceEEEEECCCCCEEE
Confidence 3457888986554 45555678888887543321 1111 345788999999999555
Q ss_pred EEeCCcEEEEEcCCceeEEEecC----CCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEEcCC-ceeeeeecc
Q 001386 815 SASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVISKLEG 880 (1088)
Q Consensus 815 ~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~d---------g~i~lwd~~~-~~~~~~l~~ 880 (1088)
+ .++.|.+||..+++....... ....+..++++| +|+++++.... ..-.||.+.. ++.. .+..
T Consensus 70 ~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 70 T-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp E-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred E-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 4 577899999988765433322 123578899999 78866654321 2234444432 3332 2333
Q ss_pred ccCCeeEEEECCCCCEEE-EEeCCCcEEEEEc--CCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEE
Q 001386 881 HSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 956 (1088)
Q Consensus 881 h~~~V~~l~~s~dg~~la-s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~ 956 (1088)
+....+.++|+||++.|+ +.+.++.|.+|++ .++.......+....... .....++++++|++.++. ..+.|.
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNGGRVI 223 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETTTEEE
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCCCEEE
Confidence 445578999999998765 4456788999998 455433333333322211 246789999999988875 457899
Q ss_pred EEEcCcceeeeeeecCCCcCEEEEEEe-eCCCEEEEEeCC
Q 001386 957 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 995 (1088)
Q Consensus 957 vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~s~d 995 (1088)
+||..+|+.+..+. .+...+++++|+ ||++.|++++..
T Consensus 224 ~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 224 RLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcCC
Confidence 99999999887754 345789999999 898887766643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-11 Score=131.20 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=175.5
Q ss_pred CCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 566653 2343667776655422 111111 01234667899999999998776
Q ss_pred EEeC-----CCEEEEEEccCCCcccceeEec----cCCCCEEEEEecCCCCcEEEEEEe---CCCcEEEEeCCCCceeEE
Q 001386 413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 413 s~~~-----dg~i~vwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~l~l~s~s---~d~~i~vwd~~~~~~~~~ 480 (1088)
+-.. ++.|.+||+.+++.++.+ .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988754422 221 22345689999987553 455555 678999999999988777
Q ss_pred eccCCccEE-EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 481 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
+.+|..... ...+ ..+|..+.+.+.+|.++.|.. .+..++|+|||+.|+++...+ ..++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~---~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHS---TSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSC---SEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCC---CeEEE
Confidence 765432111 0222 225666777778888776631 456799999999998876432 24555
Q ss_pred EeCC---CCc-----eeE--EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ ......+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 5532 111 000 111222 34567899999998888888999999998667654333321 223467899
Q ss_pred EecCCCEEEEEeCCCcE
Q 001386 630 FNKNGTLLAVIANENRI 646 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i 646 (1088)
|.+++.++++.+..+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998887777654433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.9e-11 Score=127.98 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=126.9
Q ss_pred EEEEecCCCEEEEEe---CCcEEE--EEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-----c
Q 001386 803 CFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-----S 872 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-----~ 872 (1088)
.++++|||++++++. +..+.+ +|..+ +.++..... ..+.|++...+++.+.||.+.+.|+.+ +
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 478888888888875 346778 88876 344432111 223343445666677888888889887 5
Q ss_pred eeeee----eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCccCCCCeEEEEEcC
Q 001386 873 EVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 873 ~~~~~----l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~fs~ 942 (1088)
+.+.. +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+... .....++|+|
T Consensus 201 ~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s~ 273 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKLK 273 (368)
T ss_dssp ECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEET
T ss_pred eEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEcC
Confidence 54321 11122333 3 666666666666 8999999976432211111111 01100 1122378999
Q ss_pred CCCEEEEE-e-C--------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE-EEEEe-CCCcEEEEEcCCCceEE
Q 001386 943 DQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSF-VDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 943 dg~~l~~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~s~s-~dg~v~vwd~~~~~~~~ 1010 (1088)
|++.+.++ . . +.+.++|+.+++.+..+..+ .....++|++||++ +++.. .++.|.|+|+.+++.+.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 99988874 3 2 36779999999998887654 36889999999985 55555 58999999999999998
Q ss_pred Eec
Q 001386 1011 RIL 1013 (1088)
Q Consensus 1011 ~~~ 1013 (1088)
++.
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 886
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-06 Score=95.75 Aligned_cols=532 Identities=9% Similarity=-0.014 Sum_probs=290.4
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
+|+.+ ....|+..++++..... ...+ ..-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45679999998754221 1112 22346789999997774 455666678999999876544333332223456
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
.+++.+. ++.+.++-...+.|.+.+++.................+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 6777433 34566666777899999987665444443444567899999976666665321 14568888876554433
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
.... ......++++++++.|+.+. ..+.|...++..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3332 25688999999877777664 567899999876444 333322 22345677765 445555555788988
Q ss_pred EeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec
Q 001386 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1088)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 728 (1088)
.|..+++....+.........+.+....... +.+.+ ...+ +.- ..+.+-. +........
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C-------~~~n------g~C-~~~C~~~-----~~~~~~C~C 291 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNEC-------ASSN------GHC-SHLCLAV-----PVGGFVCGC 291 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTT-------TTTG------GGC-SSEEEEE-----TTTEEEEEC
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--cceEe-------ccCC------CCc-chhhhcC-----CCCCeeEEc
Confidence 8887776555444332222233222110000 00000 0000 000 0000000 000000000
Q ss_pred CC--ccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE
Q 001386 729 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806 (1088)
Q Consensus 729 ~~--~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1088)
+. .......+|.. ...+++.+. ...|+-..+.... .. ... ++. ..-..+.++++
T Consensus 292 ~~g~~l~~d~~~C~~---~~~~Ll~s~-~~~i~~i~l~~~~----------------~~-~~~--l~~-~~~~~~~~ld~ 347 (628)
T 4a0p_A 292 PAHYSLNADNRTCSA---PTTFLLFSQ-KSAINRMVIDEQQ----------------SP-DII--LPI-HSLRNVRAIDY 347 (628)
T ss_dssp STTCEECTTSSCEEC---CSSEEEEEE-TTEEEEECCCTTC----------------CC-CEE--CCC-TTCSCEEEEEE
T ss_pred CCCcEecccCCcCcc---ccceeeeec-cceEEEEeccccc----------------Cc-eEE--EEe-hhcCCceEEEE
Confidence 00 00001111111 122333322 2233322221110 00 001 111 12345778999
Q ss_pred ecCCCEEEEEe--CCcEEEEEcCCceeEEEecC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 807 SKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 807 s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
.+....|..+. .+.|..++.........+.. ....+..+|+...++++..+-+..+.|.+.++. |+....+
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l 426 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVV 426 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEE
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEE
Confidence 99877777776 57788888764433333332 234678999998445566677778899999986 4444333
Q ss_pred -ccccCCeeEEEECC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe--C
Q 001386 879 -EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--E 952 (1088)
Q Consensus 879 -~~h~~~V~~l~~s~-dg~~las~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~--d 952 (1088)
........+|++.| .|.+..+-.... .|...+++...... ... ... .....+++++++..|..+. .
T Consensus 427 ~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~gla~D~~~~~LYw~D~~~ 498 (628)
T 4a0p_A 427 LKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SGL---SKPIALALDSRLGKLFWADSDL 498 (628)
T ss_dssp EECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEETTT
T ss_pred EeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---ccC---CCccEEEEeCCCCEEEEEeCCC
Confidence 33456689999999 554444433222 46666666532111 111 111 2468999999988777753 4
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
+.|...++. |.....+..........+++.. +....+=...+.|...|-.+|+....+
T Consensus 499 ~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 499 RRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 689999985 4444444434445567777654 444444445678888888877654433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-09 Score=115.22 Aligned_cols=230 Identities=12% Similarity=0.098 Sum_probs=154.0
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
+..-..+..|+|++..++++...++.|..||..+++... + .....+.+++++++|++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEE
Confidence 333556889999776688888888999999998876421 1 1346799999999999655
Q ss_pred EEeCCCEEEEEEccCCCcccceeEecc--CCCCEEEEEecCCCCcEEEEEE-eC--------CCcEEEEeCCC-CceeEE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITC-GD--------DKTIKVWDAVT-GSRTYS 480 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~-s~--------d~~i~vwd~~~-~~~~~~ 480 (1088)
+ . ++.|.+||.++++... +..... ....+..++++|+|+ ++++. .. ...-.+|.+.. ++.. .
T Consensus 70 ~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~ 143 (297)
T 3g4e_A 70 T-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-K 143 (297)
T ss_dssp E-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-E
T ss_pred E-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-E
Confidence 4 3 5679999998875322 111111 123588999999998 44443 21 12334554443 3332 3
Q ss_pred eccCCccEEEEeeeeeCCceEE-EEEecCCeEEEEECC--CCCce-----EEecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 481 FEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
+..+....+.++|+ ++++.+ ++.+.++.|.+|+++ ++... ..+.........++++++|++.++...
T Consensus 144 ~~~~~~~pngi~~s--pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--- 218 (297)
T 3g4e_A 144 YFDQVDISNGLDWS--LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN--- 218 (297)
T ss_dssp EEEEESBEEEEEEC--TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---
T ss_pred EeeccccccceEEc--CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---
Confidence 33333456778884 466555 556668899999984 33221 122222346788999999977666542
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEeC
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 598 (1088)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 -~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred -CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 3459999999999998888765 679999998 88888777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-10 Score=120.77 Aligned_cols=239 Identities=12% Similarity=0.044 Sum_probs=160.7
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+..|..+.......+|+|+|+.+++++..++.|..|+. +++.. . +..+...+..++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~ 92 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA 92 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence 44455666666688899999999988889888999999998 45422 1 223556789999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccC-CCCEEEEEecCCCCcEEEEE----EeC-------------CC
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK 465 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s----~s~-------------d~ 465 (1088)
++++|+++++...++.|.+|+.+ ++.........+. ...+..+++.++|+ +.++ |.. .+
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence 99999977766666889999986 4422111111111 13467899999998 6665 322 25
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC------CeEEEEECCCCCc---eEEecCCCCceEEEE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~---~~~~~~~~~~v~~~~ 536 (1088)
.|..||..+++..... .......++| +++++.|+.+... +.|.+|++..... .............++
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 6888887777755433 3345567787 5567767666655 7899999875431 111112233455689
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
++++|+..++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEE
T ss_pred ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeE
Confidence 99999954443 1 2 3999998 577777776544 4788899999998888887643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-10 Score=125.35 Aligned_cols=272 Identities=8% Similarity=0.006 Sum_probs=177.5
Q ss_pred ccEEEEEEecCCceEEEecc--ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
..+..++++++|+.+++... ++.+++|.+..+.. .-|. +.. .....+-..+..++++++|++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~--------~~~p--~~~------~~~~~~~~~p~gv~~d~~g~L 80 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL--------IPFP--PQS------GNAIITFDTVLGIKSDGNGIV 80 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE--------EESC--CCC------SSCCCCCSCEEEEEECSSSEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe--------ecCC--Ccc------cCcccceeEeeEEEEcCCCcE
Confidence 46789999999998877542 34367777652111 0000 000 001135568899999999987
Q ss_pred EEEEe------CCcEEEEEcCCceeEEEecCC------CCCeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCceeeee
Q 001386 813 LFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISK 877 (1088)
Q Consensus 813 l~~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~---~dg~i~lwd~~~~~~~~~ 877 (1088)
+++.. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++....
T Consensus 81 ~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 81 WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 66553 368999999999877766532 235689999984455556555 678999999999988777
Q ss_pred eccccCCee-EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eC-Ce
Q 001386 878 LEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-TH 954 (1088)
Q Consensus 878 l~~h~~~V~-~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d-~~ 954 (1088)
+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|.++ .. +.
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~~~~ 218 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMHSTS 218 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESSCSE
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCCCCe
Confidence 766533211 1445667888888888888766532 25689999999988875 33 35
Q ss_pred EEEEEcCc---c-----eeeeee-ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccc
Q 001386 955 LAIYEAEE---L-----TCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1025 (1088)
Q Consensus 955 i~vwd~~~---~-----~~~~~~-~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1088)
+..++... + +....+ ..++......++++++|.++++...++.|.+||..+|+...... . ..
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~--------~~ 289 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D--------EK 289 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C--------GG
T ss_pred EEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C--------Cc
Confidence 55555321 1 000000 11233456678999999999988889999999986676433222 0 01
Q ss_pred cccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001386 1026 HVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 1026 ~~~~~~~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
..++..++|.| ++.++++....+.+.+|
T Consensus 290 ~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 LSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred eecCCeeEECC-CCcEEEEeCcccccccc
Confidence 24577899999 68888888766555433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-10 Score=124.75 Aligned_cols=273 Identities=10% Similarity=-0.036 Sum_probs=174.2
Q ss_pred CeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-------
Q 001386 347 HTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY------- 415 (1088)
Q Consensus 347 ~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~------- 415 (1088)
.++.++...++ +|.+.|..+++.+.+.. .+. .+ .++++|||+++.++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEcccccccc
Confidence 34566665555 88899999999887532 122 34 799999999999886
Q ss_pred ---CCCEEEEEEccCCCcccceeEecc-C----CCCEEEEEecCCCCcEEEEEEe--CCCcEEE--EeCCCCceeEEecc
Q 001386 416 ---SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEG 483 (1088)
Q Consensus 416 ---~dg~i~vwd~~~~~~~~~~~~~~~-h----~~~v~~~~~s~d~~~l~l~s~s--~d~~i~v--wd~~~~~~~~~~~~ 483 (1088)
.++.|.+||+.+++.+..+. +.+ . ......++|+|||++ ++.+. .+..+.+ +|+.+ +.++..
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36789999999998776432 210 0 123568999999995 44443 3467888 99877 444432
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-----CCceE----EecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
.. . ..+.+... ..+++.+.||.+.+.|+++ ++... .+.....+. . ++++..++..+.
T Consensus 165 ~~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~----- 230 (368)
T 1mda_H 165 AS-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA----- 230 (368)
T ss_dssp SS-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----
T ss_pred CC-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----
Confidence 11 1 12233333 3455677788888888876 22111 011112232 3 666666665543
Q ss_pred eeEEEEeCCCCc--eeEEEecc-------ccccccEEEEEEeCCCCEEEEEeC---------CCcEEEEEcCCCeeeEEE
Q 001386 555 SFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTI 616 (1088)
Q Consensus 555 ~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~ 616 (1088)
+.+.+.|..++. .+..+... .........+.++|++++++.+.. ++.+.++|+.+++.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 348888886542 22222110 000011122679999999887643 235669999999999888
Q ss_pred eCCCCCCCCceEEEecCCC-EEEEEe-CCCcEEEEeCCCCCcccccccc
Q 001386 617 DAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 663 (1088)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 663 (1088)
..... ...++|+|||+ ++++.. .++.|.++|+.+++.+..+...
T Consensus 311 ~vg~~---p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 311 SNGHD---SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEE---ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred ECCCC---cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 75542 57899999998 455555 5899999999999888776643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-10 Score=136.61 Aligned_cols=245 Identities=9% Similarity=0.071 Sum_probs=160.4
Q ss_pred CCCCCeEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC---
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--- 465 (1088)
+|...+..++|||||++||.+. .+..|++||+.+|+.+.. .+.+. ....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCC--EEEEEEecCccc
Confidence 3566788999999999999653 235799999999975432 12111 13567999 999 566666553
Q ss_pred ----------cEEEEeCCCCce----eEEecc-CCccEEEEeeeeeCCceEEEEEec----CCeEEEEECCCCC-ceEEe
Q 001386 466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 525 (1088)
Q Consensus 466 ----------~i~vwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 525 (1088)
.|++|++.++.. +..... |...+..+.+ ++||++|+.... +..|.++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987653 222233 4445666666 567777755443 2489999998764 33444
Q ss_pred cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCCCEEEEEeCCC---
Q 001386 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 600 (1088)
Q Consensus 526 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--- 600 (1088)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 7788888777665433357899999988754 34555554 3333 8899999888766443
Q ss_pred cEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC----CcEEEEeCCCCC
Q 001386 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1088)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 655 (1088)
.|++|++..+ ....+.... ...+..+.+++++..++....+ +.+..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 445554322 1234556677888777666554 789999987664
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-09 Score=125.77 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=152.9
Q ss_pred CCcEEEEEcCCceeEEEecCCCCC--------------------------------eEEEEEcCCCCcEEEEEeCCC---
Q 001386 818 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 862 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~sp~d~~~lasg~~dg--- 862 (1088)
++.|+.+|..+|+.+..+...... ...++++| ++.+++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 567888888888888766532211 13578899 677888877664
Q ss_pred ----------------eEEEEEcCCceeeeeecc--cc-------CCeeEEEECCCC---CEEEEEeCCCcEEEEEcCCC
Q 001386 863 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 863 ----------------~i~lwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg---~~las~s~Dg~i~iwd~~~~ 914 (1088)
.|..+|..+|+.+..++. |. ....-+....+| ..++.++.+|.|+++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877653 31 122223344477 67899999999999999998
Q ss_pred ceeeeeeeecC--------CCCcc-----------------CC--CCeEEEEEcCCCCEEEEE-eC--------------
Q 001386 915 GIQTCRSLQTP--------DGVMT-----------------LA--PSETHIQFHKDQTRFLLV-HE-------------- 952 (1088)
Q Consensus 915 ~~~~~~~~~~~--------~~~~~-----------------~~--~~v~~~~fs~dg~~l~~~-~d-------------- 952 (1088)
+......+... .+... .. ..-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 75432221100 00000 00 001267899998888773 21
Q ss_pred -----------------------------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 953 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 953 -----------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
+.|..||+.+|+.+.+... ..++....++.++..+++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 6799999999998877543 344555667888999999999999999999
Q ss_pred CCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEE-eC----------------CCcEEEEeCCC
Q 001386 1004 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LT----------------NGEVYVIEPNE 1058 (1088)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~-~~----------------dg~v~~w~l~~ 1058 (1088)
.+|+.+.++..... +...-+.|.+ +|+++++. +. .+.+.+|.+..
T Consensus 506 ~tG~~lw~~~~~~~---------~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 506 ATGEKLWEAPTGTG---------VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTCCEEEEEECSSC---------CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCceeeeeeCCCC---------cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 99999998873321 1222245555 56655443 22 47899999973
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.7e-10 Score=119.49 Aligned_cols=184 Identities=11% Similarity=0.072 Sum_probs=135.4
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.+..+++++... ++++|+.+ .+++|++.+....... ....++......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~---------~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITS---------DSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHS---------SSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhcc---------ccccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 799999999998 67777776 5666998655411000 000011111223566 999999 99999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
.++.|++||+.+..... ....|..++.++.+.+.. +++++.||.|.+||+.++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p~----~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNNT----LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSSE----EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCCC----EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 456778889988877642 6778899999999999887653 446899999955
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCc--eEEe------c---CCCCceEEEEEccCCCEEEEEee
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDY------D---APGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
+| ++.|..||.+++|+.+.... ...+ . .+...|.++.|.+++.++++-..
T Consensus 173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 55 68899999999998877664 4444 2 25678999999999999987553
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-08 Score=112.87 Aligned_cols=209 Identities=10% Similarity=0.045 Sum_probs=129.0
Q ss_pred CCcEEEEEcCCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCC----ee--
Q 001386 818 GGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR----VT-- 886 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~----V~-- 886 (1088)
++.|..+|..+|+.+.......... ...... + ..+++++.+|.|..+|..+|+.+......... +.
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 6677777777777766655332111 222232 2 36777888999999999999988766532110 00
Q ss_pred -EEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcc
Q 001386 887 -GLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 963 (1088)
Q Consensus 887 -~l~~s~--dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~ 963 (1088)
.+.-+| .+..+..++.++.+..+|..+++..-... .+ ....+... ++..++.+.++.+..+|..+|
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----~~------~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE----LG------SVNDFIVD-GNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC----CC------CEEEEEEE-TTEEEEEETTCCEEEEETTTC
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc----CC------CCCCceEE-CCEEEEEcCCCeEEEEECCCC
Confidence 011111 24667778889999999999876432111 11 13333332 444444567889999999999
Q ss_pred eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccc-eEEEECCCCCCEE
Q 001386 964 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP-HAIAAHPLKPTQF 1042 (1088)
Q Consensus 964 ~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~d~~~l 1042 (1088)
+.+..........+..... .+..|++++.+|.|.++|..+|+.+.+..... ..+.. ..+. +..|
T Consensus 298 ~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~--------~~~~~~~~~~-----~~~l 362 (376)
T 3q7m_A 298 VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS--------SGFQTEPVAA-----DGKL 362 (376)
T ss_dssp CEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT--------TCBCSCCEEE-----TTEE
T ss_pred cEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC--------CcceeCCEEE-----CCEE
Confidence 9876643222222223333 35678889999999999999999987765311 01111 1221 3578
Q ss_pred EEEeCCCcEEEEe
Q 001386 1043 AVGLTNGEVYVIE 1055 (1088)
Q Consensus 1043 ~~~~~dg~v~~w~ 1055 (1088)
++++.+|.|+.|+
T Consensus 363 ~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 363 LIQAKDGTVYSIT 375 (376)
T ss_dssp EEEBTTSCEEEEE
T ss_pred EEEeCCCEEEEEe
Confidence 8899999999987
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.2e-09 Score=113.16 Aligned_cols=225 Identities=13% Similarity=0.025 Sum_probs=149.2
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
-..+.+|+|++..++.++..++.|.+||..+++... +. ....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 346789999877788888888999999998875331 11 23579999999999887764
Q ss_pred CCCEEEEEEccCCCcccceeEec-c-CCCCEEEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeccCCcc
Q 001386 416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~s~------d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
.+ .|.+||..+++... +.... + ....+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998876322 11111 1 123688999999998 4444332 24555556 45443 33223334
Q ss_pred EEEEeeeeeCCceEE-EEEecCCeEEEEECC--CC-Cc-----eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
...++| +++++.+ ++.+.++.|.+||++ ++ .. ...+.........++++++|.+.++... .+.|.
T Consensus 181 ~~~i~~--s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEE--cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 667777 4566655 444567899999986 43 21 1122223445678999999987766532 34599
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEeCC
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD 599 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d 599 (1088)
.||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence 9998 677777776554 579999998 888877665543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-05 Score=92.62 Aligned_cols=521 Identities=7% Similarity=-0.034 Sum_probs=273.2
Q ss_pred CCCEEEEEEccCCC-cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEeccCCccEEEEee
Q 001386 416 SKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCP 493 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~ 493 (1088)
....|+..++.... ... .+......+..++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34557777877542 111 12223345789999997774 444555567899999776532 2233333356778888
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC
Confidence 543 34566666778999999998765544444444556789999987666665421 134577777654333222222
Q ss_pred cccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 574 LQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
. ....+.+++++++..|+.+. ..+.|...++............ ......+++..+ .++++-...+.|...|..
T Consensus 169 ~---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 169 E---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp S---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred C---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 2 25678999999877776654 5678888888654443333211 122357787665 444454557889999988
Q ss_pred CCCcccccccccCcceeeeec-CCCccee-ccc----cCC-ceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 653 ESNSVDAAGVLSDNLRKLSVN-PISTVTG-AGI----ANG-SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 653 ~~~~~~~~~~~~~~v~~~~~~-p~~~~~~-~~~----~~~-~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
+++....+.........+++. |.....+ ..+ ..+ .+.+. ++......+...+|...
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l-------------- 305 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKL-------------- 305 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCB--------------
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhee--------------
Confidence 776554443322222233322 1110000 000 000 00000 00000000000000000
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 805 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1088)
.....+|. .....+|+. +..+.|+..++..... . ...... ..-..+.+++
T Consensus 306 -------~~d~~~C~--~~~~~~Ll~-~~~~~i~~i~l~~~~~----------------~-~~~~~~---~~l~~~~~ld 355 (619)
T 3s94_A 306 -------LENGKTCK--DGATELLLL-ARRTDLRRISLDTPDF----------------T-DIVLQL---EDIRHAIAID 355 (619)
T ss_dssp -------CTTSSCBC--SSCSEEEEE-EESSCEEEEESSSTTC----------------C-CEECCC---SCCSSEEEEE
T ss_pred -------cccCcccC--CCCceEEEE-EcccceEEEecCCCcc----------------c-eeEEec---cccCccEEEE
Confidence 00000000 011122332 3334555555443221 0 001111 1234577899
Q ss_pred EecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC
Q 001386 806 LSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 806 ~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
+.+.+..|..++ .+.|..+++........+...-.....+++.+.++++..+-+..+.|.+.++........+...-.
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~ 435 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLE 435 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCC
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCC
Confidence 998767776665 678999998754433334333356778999864566777666778999999875432222233345
Q ss_pred CeeEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEE
Q 001386 884 RVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE 959 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd 959 (1088)
...+|++.|...+|..+.. ...|...+++..... .+. .... .....+++++++..|..+ ..+.|..++
T Consensus 436 ~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~---~l~--~~~l---~~P~GlalD~~~~~LY~aD~~~~~I~~~~ 507 (619)
T 3s94_A 436 EPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV---VLV--NTSL---GWPNGLALDYDEGKIYWGDAKTDKIEVMN 507 (619)
T ss_dssp SEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE--CSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE---EEE--eCCC---CCCeeeEEcccCCEEEEEECCCCEEEEEe
Confidence 6789999997555554442 356666677653311 111 1111 256899999987777765 446788888
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCc
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLE 1007 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~ 1007 (1088)
+.... ...+..........++...+ +|+.+. ..+.|..-+..+|.
T Consensus 508 ~dG~~-~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 508 TDGTG-RRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp SSSCC-CEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred cCCCc-eEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 76332 33332222222334555433 555443 45678777877773
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-09 Score=123.06 Aligned_cols=199 Identities=11% Similarity=0.089 Sum_probs=132.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCcc----------E-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
.++.++.++.|..+|..+|+.+.++...... + ..+++ ++..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4666777899999999999999887643211 0 11222 2347888899999999999999988877
Q ss_pred cCC-C----CceEEEEEccCCCEEEEEeeCCC--CceeEEEEeCCCCceeEEEeccccc---------------------
Q 001386 526 DAP-G----LGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ--------------------- 577 (1088)
Q Consensus 526 ~~~-~----~~v~~~~~s~~g~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~--------------------- 577 (1088)
... . ..+.+.-.. .+..++++....+ .++.|+.+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 2 111110011 2345555442211 2578999999999998777643210
Q ss_pred --------cccEEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCeeeEEEeCCCCC-------C
Q 001386 578 --------HNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------P 623 (1088)
Q Consensus 578 --------~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 623 (1088)
......++++|++..++.++.++ .|..+|..+|+.+..++...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 01113578899999999887664 5999999999999888753221 1
Q ss_pred CCceEEEecCC---CEEEEEeCCCcEEEEeCCCCCccccc
Q 001386 624 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAA 660 (1088)
Q Consensus 624 ~v~~v~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1088)
....+....+| ..++.++.+|.++++|..+++.+...
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 11223333477 68899999999999999998776543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-09 Score=125.73 Aligned_cols=204 Identities=16% Similarity=0.127 Sum_probs=129.0
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCC----------CE-EEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG----------NV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~----------~v-~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
+..|.+++.++.|.-+|..+|+.+-. +..+.. .+ ..++. ++. .++.++.|+.|..+|.++|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~---~~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWK---YDPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEE---ECCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEE---EcCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 56777777888899999999976542 221111 00 11222 234 57788889999999999999
Q ss_pred eeEEeccC--CccEEEEeeee-eCCceEEEEEe------cCCeEEEEECCCCCceEEecCCC------------------
Q 001386 477 RTYSFEGH--GAPVYSLCPHA-KENIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPG------------------ 529 (1088)
Q Consensus 477 ~~~~~~~~--~~~v~~~~~~~-~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~------------------ 529 (1088)
.+..+... ......+...| -.++. ++.++ .+|.|..||.++++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 99877542 11101110000 01333 44443 37899999999999877654210
Q ss_pred -------------CceEEEEEccCCCEEEEEeeCCC-----------Cc----eeEEEEeCCCCceeEEEecccc-----
Q 001386 530 -------------LGCTRMAYSANGRRLFSCGTSKE-----------GE----SFLVEWNESEGAIKRTYQGLQL----- 576 (1088)
Q Consensus 530 -------------~~v~~~~~s~~g~~l~~~~~~~~-----------~~----~~i~iwd~~~~~~~~~~~~~~~----- 576 (1088)
.....++++|++..++++..++. ++ ..|..+|..+|+.+-.++....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 01125788999888888764321 01 1499999999999888765320
Q ss_pred -ccccEEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 577 -QHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 577 -~~~~v~~~~~~~~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
....+.......+|+ .++.++.+|.++++|..+|+.+......
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 348 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIV 348 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccc
Confidence 011222223333554 7888999999999999999999776643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-08 Score=109.94 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=99.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCC---------ccEEE-EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVYS-LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~---------~~v~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1088)
.++.++.++.|..+|.++|+.+..+.... ..+.+ ... ++..++.++.++.|..+|.++++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 57778889999999999999987765421 22222 222 23478888999999999999998877665
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccc--ccEEEEEEeCCCCEEEEEeCCCcEEE
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 604 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1088)
............ +..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 543322112222 345555543 5569999999999887766533000 000111222 457888888999999
Q ss_pred EEcCCCeeeEEEeCC
Q 001386 605 WDMNKVQLLTTIDAG 619 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~ 619 (1088)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988777643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-08 Score=108.45 Aligned_cols=225 Identities=13% Similarity=0.029 Sum_probs=146.3
Q ss_pred eEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001386 399 VNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1088)
Q Consensus 399 V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~ 477 (1088)
..+.+|+|++. ++++...++.|.+||..+++.. .+ .+...+.+++|+++|+ ++++. .+ .|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VH-ALPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EE-ECSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EE-ECCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCcE
Confidence 45688999755 5556567789999999887532 12 2346799999999998 45543 34 499999988876
Q ss_pred eEEecc----CCccEEEEeeeeeCCceEEEEEec------CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 478 TYSFEG----HGAPVYSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 478 ~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
...... ....+..+++ +++|.++++... .+.|..++ +++ ...+.........++|+|||+.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 433221 1235777877 456666665442 24455555 332 22222222346789999999988776
Q ss_pred eeCCCCceeEEEEeCC--CC-cee--EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCC
Q 001386 548 GTSKEGESFLVEWNES--EG-AIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~--~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1088)
.. ..+.|.+|+.. ++ ... +.+............+++.++|...++...++.|.+||. +++.+..+..+.
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~-- 270 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG-- 270 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC--
Confidence 42 24569999975 55 321 222211111245778999999987777777789999998 677777776543
Q ss_pred CCCceEEEe-cCCCEEEEEeCC
Q 001386 623 PENPRICFN-KNGTLLAVIANE 643 (1088)
Q Consensus 623 ~~v~~v~~s-~~~~~l~~~~~d 643 (1088)
..+.+++|+ ++++.|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 247899998 888777665543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.14 E-value=8e-09 Score=123.82 Aligned_cols=194 Identities=15% Similarity=0.173 Sum_probs=131.9
Q ss_pred CCcEEEEEcCCceeEEEecCCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCCe---
Q 001386 818 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 863 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~sp~d~~~lasg~~dg~--- 863 (1088)
++.|..||..+|+.+..+.... ..-..++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888776654210 0112578998 6778888888764
Q ss_pred ----------------EEEEEcCCceeeeeecc--cc-------CCeeEEEECCCCC---EEEEEeCCCcEEEEEcCCCc
Q 001386 864 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 864 ----------------i~lwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~las~s~Dg~i~iwd~~~~~ 915 (1088)
|..+|..+|+.+..++. |. .++.......+|+ .++.++.+|.++++|..+|+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999887754 32 1222222223665 78889999999999999988
Q ss_pred eeeeeeeec------------------------CCCC-----cc-CC-CCeEEEEEcCCCCEEEEE-e------------
Q 001386 916 IQTCRSLQT------------------------PDGV-----MT-LA-PSETHIQFHKDQTRFLLV-H------------ 951 (1088)
Q Consensus 916 ~~~~~~~~~------------------------~~~~-----~~-~~-~~v~~~~fs~dg~~l~~~-~------------ 951 (1088)
......+.. ..+. .. .. ..-..++|+|+..++.+. .
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 542211110 0000 00 00 012247899998887763 1
Q ss_pred ---------------------------------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcE
Q 001386 952 ---------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 998 (1088)
Q Consensus 952 ---------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v 998 (1088)
++.|+.||+.+|+.+.+... ..++..-.++..|..+++++.||.+
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcE
Confidence 36799999999998877543 2333344677788899999999999
Q ss_pred EEEEcCCCceEEEecc
Q 001386 999 SIHEASNLEVQCRILS 1014 (1088)
Q Consensus 999 ~vwd~~~~~~~~~~~~ 1014 (1088)
+.||..+|+.+.++..
T Consensus 499 ~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 499 IAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred EEEECCCCccceeeeC
Confidence 9999999999988863
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.14 E-value=8e-09 Score=111.25 Aligned_cols=235 Identities=14% Similarity=0.070 Sum_probs=153.6
Q ss_pred cCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 393 RDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
..........+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSD 113 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEEC
Confidence 33556678899999998 5566667889999998 443 22 3445667899999999998 566555567899999
Q ss_pred CCCCceeEEeccC----CccEEEEeeeeeCCceEEEE----Eec-------------CCeEEEEECCCCCceEEecCCCC
Q 001386 472 AVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGL 530 (1088)
Q Consensus 472 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 530 (1088)
.. |+........ ...++.+++ +++|.+.++ |.. .+.|..||..+++..... ...
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 75 6543222111 123456666 457777776 321 245777776555544333 334
Q ss_pred ceEEEEEccCCCEEEEEeeCC--CCceeEEEEeCCCCcee--EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1088)
....++|+||++.|+++.... .+...|++|++..+... ..+... .......+++.++|+. .+++.+ .|.+|+
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~ 264 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWL-WSSSGT-GVCVFD 264 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCE-EECCSS-EEEEEC
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCE-EEecCC-cEEEEC
Confidence 567899999999888775421 01256999998765421 111111 1234567889999984 444444 499999
Q ss_pred cCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
. +++.+..+.... .+.+++|+++++.|.+++.++..+
T Consensus 265 ~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 265 S-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp T-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred C-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 8 577777776554 378899999998888888764333
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-08 Score=109.37 Aligned_cols=237 Identities=12% Similarity=0.062 Sum_probs=152.7
Q ss_pred cCCceEEEec-cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-C---
Q 001386 744 NGGQAIFALA-SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G--- 818 (1088)
Q Consensus 744 ~~g~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d--- 818 (1088)
.++++|++.+ .++.|.++|+..... .+++-++.....+.. . ........+.++|+| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~------~p~~~k~ie~~~~~~-~----~g~s~Ph~~~~~pdG-i~Vs~~g~~~g 160 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPR------EPKIIKVIEPEEVKK-V----SGYSRLHTVHCGPDA-IYISALGNEEG 160 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTT------SCEEEEEECHHHHHH-H----HCEEEEEEEEECSSC-EEEEEEEETTS
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCC------Cceeeeeechhhccc-c----cCCCcccceeECCCe-EEEEcCCCcCC
Confidence 7788776654 578999999754432 112111110000000 0 011134567889999 666553 3
Q ss_pred ---CcEEEEEcCCceeEEEecCCCC---CeEEEEEcCCCCcEEEEEe-------------------CCCeEEEEEcCCce
Q 001386 819 ---GVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGM-------------------DDSTILIYNARSSE 873 (1088)
Q Consensus 819 ---g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~-------------------~dg~i~lwd~~~~~ 873 (1088)
|.|.++|.++++.+.++..... ....+.|+| +++.+++.. .+.+|.+||+.+++
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 6799999999999998863322 234588899 788888774 36899999999998
Q ss_pred eeeeeccc-c-CCeeEEEE--CCCCCEEEEEe------CCCcEEEEEcCCCceeeeeeeecCCCCcc------------C
Q 001386 874 VISKLEGH-S-KRVTGLVF--SDALNILVSSG------GDAQIFVWDVDGWGIQTCRSLQTPDGVMT------------L 931 (1088)
Q Consensus 874 ~~~~l~~h-~-~~V~~l~~--s~dg~~las~s------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~ 931 (1088)
.+.++..- . .....+.| +|+++++..++ .+++|.+|..+.+.......+........ .
T Consensus 240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 88877642 1 23445655 99999988776 56789888877655333333221111000 0
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCc---ceeeeeeecC-------C------CcCEEEEEEeeCCCEEEEEe
Q 001386 932 APSETHIQFHKDQTRFLLV--HETHLAIYEAEE---LTCLKQWFPI-------S------SVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 932 ~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~---~~~~~~~~~~-------h------~~~v~~l~fs~dg~~l~s~s 993 (1088)
......+.+|+||++|.++ ..+.|.+||+.. .+.+..+..+ | .+....+++||||++|+++.
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1347889999999999996 457899999863 3455554433 1 01367899999999999887
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-08 Score=105.90 Aligned_cols=230 Identities=14% Similarity=0.114 Sum_probs=151.4
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCc----eeEEEec-------CCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEE
Q 001386 808 KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------STILIYN 868 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~sp~d~~~lasg~~d------g~i~lwd 868 (1088)
+++++|++.+ +++|.++|+.+. +...++. ........+.++| ++ ++++...+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 7899998887 788999999765 6666663 1112456788999 77 66665555 7899999
Q ss_pred cCCceeeeeeccccC---CeeEEEECCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeeeeecCC
Q 001386 869 ARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRSLQTPD 926 (1088)
Q Consensus 869 ~~~~~~~~~l~~h~~---~V~~l~~s~dg~~las~s-------------------~Dg~i~iwd~~~~~~~~~~~~~~~~ 926 (1088)
..+++.+.++..-.+ --+.+.|+|+++.+++.. .+.+|.+||+.+++... .+....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~ 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGE 248 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCC
Confidence 999999998863322 234688999999988874 36889999999864332 233321
Q ss_pred CCccCCCCeEEEEE--cCCCCEEEEE-------eCCeEEEEEcCcceeeeee---ecC----------------CCcCEE
Q 001386 927 GVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPI----------------SSVPIS 978 (1088)
Q Consensus 927 ~~~~~~~~v~~~~f--s~dg~~l~~~-------~d~~i~vwd~~~~~~~~~~---~~~----------------h~~~v~ 978 (1088)
... ....+.| +|+++++.++ -+++|.+|....|+..... ... -.....
T Consensus 249 ~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 249 ENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp TEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 111 2456656 9999988873 3457877665544321110 000 024578
Q ss_pred EEEEeeCCCEEEEEeC-CCcEEEEEcCC---CceEEEeccccccCCC--Cccc--cccceEEEECCCCCCEEEEEe
Q 001386 979 QATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPT--TSCL--HVYPHAIAAHPLKPTQFAVGL 1046 (1088)
Q Consensus 979 ~l~fs~dg~~l~s~s~-dg~v~vwd~~~---~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~p~d~~~l~~~~ 1046 (1088)
.+.+|+||++|.++.. .+.|.++|+.. .+++..+......... +.+. ...|..++++| ||+.|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 8999999999987764 68999999863 3555555433110000 0000 12467799999 899999888
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-08 Score=111.41 Aligned_cols=329 Identities=12% Similarity=0.051 Sum_probs=200.0
Q ss_pred cEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe----------cCCe-EEEEECCCCCceE
Q 001386 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGK-IKAWLYDSLGARV 523 (1088)
Q Consensus 455 ~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~-i~iwd~~~~~~~~ 523 (1088)
++.+.||+..|.++|+-+.+++.+..+......-. .-|-.++..+.++..+ .+|. ...|
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~--------- 84 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGKRIHDN--------- 84 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCC---------
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCceeccc---------
Confidence 34688899999999999999999988753211000 0000000000011000 0110 0000
Q ss_pred EecCCCCceEEEEE---ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE-e-CCCCEEEEEe-
Q 001386 524 DYDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG- 597 (1088)
Q Consensus 524 ~~~~~~~~v~~~~~---s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s- 597 (1088)
+.. .-..+++ .+||++++++.. .+..|.+.|+.+.++.+.+.-.. ......+++ + |+++++++++
T Consensus 85 ---gd~-hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 85 ---GDL-HHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGE 155 (595)
T ss_dssp ---CCB-CCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEEC
T ss_pred ---CCC-CccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecc
Confidence 000 1122333 348999998653 35679999999999888665332 245778887 5 9999999985
Q ss_pred -----------------CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc---------------
Q 001386 598 -----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR--------------- 645 (1088)
Q Consensus 598 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~--------------- 645 (1088)
.++.+.+.|..+.+...++...+. -..++++|+|+++++.+.+..
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 245799999999999999886542 356899999999999886531
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
+.+.+.....
T Consensus 233 v~V~~~~~~~---------------------------------------------------------------------- 242 (595)
T 1fwx_A 233 IVVFNIAEIE---------------------------------------------------------------------- 242 (595)
T ss_dssp EEEEEHHHHH----------------------------------------------------------------------
T ss_pred EEEeecccee----------------------------------------------------------------------
Confidence 2222211000
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCc-ceeeccCCCCCCCCeeEE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~ 804 (1088)
++.++|++... +.|.+.|....+ +.. +.... -.....++
T Consensus 243 ---------------~~v~~Gk~~~i----~~V~VID~~~~~----------------~~~~~~~Ip-----vg~~PhGv 282 (595)
T 1fwx_A 243 ---------------KAIAAGDYQEL----NGVKVVDGRKEA----------------SSLFTRYIP-----IANNPHGC 282 (595)
T ss_dssp ---------------HHHHHTCSEEE----TTEEEEECSGGG----------------CCSSEEEEE-----EESSCCCE
T ss_pred ---------------EeccCCCeeEE----CcEEEEeCcccC----------------CceeEEEEe-----cCCCceEE
Confidence 01111211111 224444432200 111 11111 12345578
Q ss_pred EEecCCCEEEEEe--CCcEEEEEcCCce------------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001386 805 ALSKNDAYLFSAS--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 870 (1088)
Q Consensus 805 ~~s~dg~~l~~~~--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~ 870 (1088)
.++|||+++++++ +++|.++|+.+.+ ....+. -......++|+| +|...++..-|++|.+||+.
T Consensus 283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHH
T ss_pred EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhh
Confidence 9999999999887 6889999999763 233332 345678999999 77666778889999999998
Q ss_pred C----------ceeeeeeccccCCe-----eEEEECCCCCEEEEEe---CCCc----------EEEEEcCCCcee
Q 001386 871 S----------SEVISKLEGHSKRV-----TGLVFSDALNILVSSG---GDAQ----------IFVWDVDGWGIQ 917 (1088)
Q Consensus 871 ~----------~~~~~~l~~h~~~V-----~~l~~s~dg~~las~s---~Dg~----------i~iwd~~~~~~~ 917 (1088)
+ .+.+.++..|-.+- .+++++|||++|+++. .|+. -.++|+++++..
T Consensus 361 ~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 361 DAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp HHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred HhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 7 45667776554321 2345689999999875 3553 288999766533
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-09 Score=113.91 Aligned_cols=301 Identities=11% Similarity=0.054 Sum_probs=177.6
Q ss_pred EEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 446 ~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
+.....++. +..++.++.|..|| .+++.+..+..+...+.++.. ..++. +..++.+ |..+|. +++....+
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence 344555665 66677888999999 888887665544444455544 33544 4445444 777875 33333333
Q ss_pred cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001386 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 526 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1088)
...........+. +..+.+++. ++.+..+|.. ++......... ..+.++...+++. ++.++.++.|..+
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 2222222223333 445555543 4458999988 77666655443 4455566666665 6667788999999
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccC
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 685 (1088)
|.. ++.+..+..... .+.++...+++.+.+. + +.+..+| .+++.......
T Consensus 163 d~~-g~~~~~~~~~~~--~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~----------------------- 212 (330)
T 3hxj_A 163 NPD-GTEKWRFKTNDA--ITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA----------------------- 212 (330)
T ss_dssp CTT-SCEEEEEECSSC--CCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC-----------------------
T ss_pred CCC-CCEeEEEecCCC--ceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc-----------------------
Confidence 998 777776664432 4566777677764443 3 5666666 33221100000
Q ss_pred CceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEE
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 845 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 845 (1088)
....+.+++..++|.+.+...++.+..+|. +++.+..+......+.++
T Consensus 213 -------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~ 260 (330)
T 3hxj_A 213 -------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSP 260 (330)
T ss_dssp -------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCC
T ss_pred -------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccc
Confidence 011233445555655555444566666653 445554444343334455
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 846 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 846 ~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|++.+ ++.+|.+++.....
T Consensus 261 ~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 261 VIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp EECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred eEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence 6665 44 5667888889999995 6777776665566678888888887554 78899998887765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=0.00017 Score=84.60 Aligned_cols=478 Identities=9% Similarity=-0.024 Sum_probs=241.4
Q ss_pred CCcEEEEeCCCCc-eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCC
Q 001386 464 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 464 d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g 541 (1088)
...|+..|+.... ........-.....+++++. ++.++.+-...+.|..++++.... ...+...-.....+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 5678888877653 12222223345667777653 344555555678899998876532 23333333567899999988
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeEEEeCC
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
..|+.+.. ..+.|.+.+.............. .....+++.|.+.+|+.+.. .+.|...++...........
T Consensus 96 ~~ly~~d~---~~~~I~v~~~dG~~~~~l~~~~l---~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~- 168 (619)
T 3s94_A 96 EKLYWTDS---ETNRIEVSNLDGSLRKVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS- 168 (619)
T ss_dssp TEEEEEET---TTTEEEEEETTSCSCEEEECSSC---SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-
T ss_pred CEEEEEeC---CCCEEEEEECCCCCEEEEEeCCC---CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC-
Confidence 87777642 35679999987554333332222 45778999998776666552 46777777754333333322
Q ss_pred CCCCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCC
Q 001386 620 GGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 698 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1088)
.......+++++++..|..+. ..+.|...++..........+.......+++.. +
T Consensus 169 -~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~----------------------~- 224 (619)
T 3s94_A 169 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------D- 224 (619)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS----------------------S-
T ss_pred -CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC----------------------C-
Confidence 122457899999766655554 457788888875432222111111111222221 1
Q ss_pred CcccccccCccceeccccccCCCcceeeecCCccccccEEEEEE-ecCCceEE--Eec-cc---cceEEEEccCCCCCCC
Q 001386 699 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY-NNGGQAIF--ALA-SN---GVHLMWRWPRNDLTLS 771 (1088)
Q Consensus 699 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~--~~~-~d---g~v~iw~~~~~~~~~~ 771 (1088)
....+-...+.|...+...+.... .+ ... ......+++ .+..+... .+. .+ ..+.+-. +....
T Consensus 225 ~ly~td~~~~~V~~~d~~tg~~~~--~i-~~~---~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~-~~~~~--- 294 (619)
T 3s94_A 225 ILYWTDWSTHSILACNKYTGEGLR--EI-HSD---IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMS-PVKPF--- 294 (619)
T ss_dssp EEEEECTTTCSEEEEESSSCCCCE--EC-CSC---CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEEC-SSTTS---
T ss_pred EEEEecCCCCEEEEEECCCCcccE--EE-ecC---CCCCcEEEEEccccCCCccccccCCCCcccceEECC-CCCCC---
Confidence 222233333444444432221110 00 000 000111111 11110000 000 00 0000000 00000
Q ss_pred CCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEE-Eec-CCCCCeEEEEEcC
Q 001386 772 TEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIM-PPSPTATSLAFNP 849 (1088)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~l~~sp 849 (1088)
..-....|..+ .....+|. .....+|+.+..+.|+..++....... .+. ..-..+.+++|.+
T Consensus 295 -----~~C~C~~g~~l---------~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~ 358 (619)
T 3s94_A 295 -----YQCACPTGVKL---------LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDP 358 (619)
T ss_dssp -----EEEECCTTCCB---------CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEET
T ss_pred -----ceEeCCchhee---------cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEc
Confidence 00000001000 01111111 112346777777788888887653221 121 1234678999998
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001386 850 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 928 (1088)
Q Consensus 850 ~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 928 (1088)
.++.++.+-...+.|+.+++........+...-.....+++.+.++ +.++-+..+.|.+.++++.... .+.. .+
T Consensus 359 ~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~---~l~~-~~- 433 (619)
T 3s94_A 359 VEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK---ILIS-ED- 433 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEC-TT-
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE---EEEE-CC-
Confidence 5565555555678999999876443333333335678899987554 4555556788999998864321 1111 11
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcC
Q 001386 929 MTLAPSETHIQFHKDQTRFLLVH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEAS 1004 (1088)
Q Consensus 929 ~~~~~~v~~~~fs~dg~~l~~~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~ 1004 (1088)
. .....+++.|...+|..+. ...|...++. |.....+....-.....+++++++..|..+. ..+.|...++.
T Consensus 434 l---~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 434 L---EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp C---CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred C---CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 1 2478999999754554432 3567766665 3333333434456788999999877777665 44778889986
Q ss_pred CCce
Q 001386 1005 NLEV 1008 (1088)
Q Consensus 1005 ~~~~ 1008 (1088)
....
T Consensus 510 G~~~ 513 (619)
T 3s94_A 510 GTGR 513 (619)
T ss_dssp SCCC
T ss_pred CCce
Confidence 5543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=0.00019 Score=84.36 Aligned_cols=533 Identities=8% Similarity=-0.016 Sum_probs=280.2
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-eCCCEEEEEEccC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHG 427 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~-~~dg~i~vwd~~~ 427 (1088)
|+.+ ....|+.-++.+.......+ + ..-..+..++|++++..|..+ ..++.|..+++..
T Consensus 9 Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g 68 (628)
T 4a0p_A 9 LLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68 (628)
T ss_dssp EEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence 4444 33788888887654322111 1 123468899999966665544 5678899999876
Q ss_pred CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEE-e
Q 001386 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-S 506 (1088)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~ 506 (1088)
... .. .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|. +|.++.+- +
T Consensus 69 ~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g 143 (628)
T 4a0p_A 69 SAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWG 143 (628)
T ss_dssp CSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECS
T ss_pred CCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCC
Confidence 532 21 22222245678899877665 4555666788999997654432223233445678888553 34444443 2
Q ss_pred cCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE
Q 001386 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 586 (1088)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 586 (1088)
..+.|...+++......... .......+++++++..|+.+-. +...|...|+..... +.+.... .....+++
T Consensus 144 ~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~glav 215 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLTQ 215 (628)
T ss_dssp SSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEEE
T ss_pred CCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEEE
Confidence 35678888887665544443 4456789999999888887753 355788899875444 3333322 34567777
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE-EecCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 001386 587 DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD 665 (1088)
Q Consensus 587 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 665 (1088)
.. +..+++-...+.|...|..+|+....+..... ....+. +++..+. + ...+.. ...
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~------------~n~C~~----~ng 273 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G------------WNECAS----SNG 273 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C------------CCTTTT----TGG
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c------------ceEecc----CCC
Confidence 64 34444444578899999888876666653321 223332 2221110 0 000000 000
Q ss_pred cceeeeecCC-CcceeccccCCceee-cCCC-CCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEE
Q 001386 666 NLRKLSVNPI-STVTGAGIANGSVSV-NEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1088)
Q Consensus 666 ~v~~~~~~p~-~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 742 (1088)
....+++... +... ..+..|.... .+.. .+...+++.+. ...|+-..+..... ....++. .....+..++|
T Consensus 274 ~C~~~C~~~~~~~~~-C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~ 347 (628)
T 4a0p_A 274 HCSHLCLAVPVGGFV-CGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY 347 (628)
T ss_dssp GCSSEEEEETTTEEE-EECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred CcchhhhcCCCCCee-EEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence 0001111100 1000 0011110000 0000 00112222222 23343333321111 0111121 12345778999
Q ss_pred ecCCceEEEec-cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CC
Q 001386 743 NNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GG 819 (1088)
Q Consensus 743 s~~g~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg 819 (1088)
.+....|+.+. ..+.|+.++.+.... ..+.............+..+++...+..|..+. .+
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~----------------~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~ 411 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQG----------------FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATN 411 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC----------------EEEEC--------CCCEEEEEEETTTTEEEEEETTTT
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCc----------------eEEEEcccccccccCCcceEEeeccCCeEEEEcCCCC
Confidence 88766665554 356666665432211 001100000001234678999999888777665 57
Q ss_pred cEEEEEcCCceeEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceeeeeeccccCCeeEEEECCCCCE
Q 001386 820 VISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 896 (1088)
Q Consensus 820 ~i~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 896 (1088)
.|.+.++. |+....+ ........++++.|..+.++.+-.... .|...++............-...+.|++.++++.
T Consensus 412 ~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~ 490 (628)
T 4a0p_A 412 VINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGK 490 (628)
T ss_dssp EEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCE
Confidence 79999986 4444444 334567899999995565555543333 5777776533222222323445789999998777
Q ss_pred EEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeee
Q 001386 897 LVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 897 las~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~ 968 (1088)
|..+. ..+.|...+++..... .+.. +.. .....+++.. +....+ ...+.|...|..+|+....
T Consensus 491 LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 491 LFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp EEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred EEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence 76664 4578999998764322 1111 111 1345676654 333333 3445677777776665444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-08 Score=110.20 Aligned_cols=268 Identities=12% Similarity=0.062 Sum_probs=171.3
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d 417 (1088)
.+..+..+|. +..++.++.|..|| .+|+.+.... .+...+.++...++|...+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~~-------------------~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFFK-------------------SGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESSC-------------------GGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEEe-------------------cCCCcccceEEecCCcEEE-ecCc
Confidence 4556667776 45667788999999 8887654311 1234456777777776444 4444
Q ss_pred CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC
Q 001386 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1088)
Q Consensus 418 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1088)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. |+.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 5554432 22222222233333 44 46778888999999988 8877776655544444444 33
Q ss_pred CceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccc
Q 001386 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1088)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1088)
++ .+..++.++.|..+|.. +............+.++.+.+++...+.. +.+..+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 46678888999999988 66666666555567777887888765543 2399999 7777766655433
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
..+.++...+++ .+..++.++.+..+|. +++.+..+..... .+..+.+.+++ .|.+++.+|.+..+|. +++..
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 557777787776 4666777888888874 5666666654432 24456666566 5667778888999985 55544
Q ss_pred ccc
Q 001386 658 DAA 660 (1088)
Q Consensus 658 ~~~ 660 (1088)
...
T Consensus 288 ~~~ 290 (330)
T 3hxj_A 288 WNF 290 (330)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-08 Score=112.65 Aligned_cols=238 Identities=8% Similarity=-0.015 Sum_probs=162.3
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCceeEEEecCC-CCCeEEEEE-c-CCCCcEEEEEe------------------CCCeE
Q 001386 808 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI 864 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~d~~~lasg~------------------~dg~i 864 (1088)
+||+++.+.. ++.|.+.|+.+.+....+.-+ ......+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3899998886 567999999999988855433 356888888 5 8 788888874 34589
Q ss_pred EEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC--------------------------------------cE
Q 001386 865 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI 906 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg--------------------------------------~i 906 (1088)
.+.|..+.+.+.++.--. ....++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999999888776322 356788999999999888553 25
Q ss_pred EEEEcCCCceee-eeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCcce------------eeeeeec
Q 001386 907 FVWDVDGWGIQT-CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWFP 971 (1088)
Q Consensus 907 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~------------~~~~~~~ 971 (1088)
.+.|..+.+... ...+... ....++.|+|||++++++ .+++|.++|+.+.+ ......
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~- 328 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE- 328 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-
T ss_pred EEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-
Confidence 555555411000 1111111 124579999999999986 56789999999764 222322
Q ss_pred CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC----------CceEEEeccccccCCCCccccccceEEEECCCCCCE
Q 001386 972 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1041 (1088)
Q Consensus 972 ~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~ 1041 (1088)
-......++|++||...++..-|+.|.+||+.+ ...+.++..+.. + ++...++.++++| ||++
T Consensus 329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-p----Gh~~~~~g~t~~~-DGk~ 401 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-P----GHLKTVMGETLDA-TNDW 401 (595)
T ss_dssp -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-E----EEEEETTTTSTTC-CSSE
T ss_pred -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc-c----ccceeccceEeCC-CCCE
Confidence 256789999999994345566899999999988 445555553221 0 1112223456788 8999
Q ss_pred EEEEeCCC--cE-----------EEEeCCCCCCC
Q 001386 1042 FAVGLTNG--EV-----------YVIEPNEPGDT 1062 (1088)
Q Consensus 1042 l~~~~~dg--~v-----------~~w~l~~~~~~ 1062 (1088)
|+++..-. .+ .++|++....+
T Consensus 402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred EEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 98886533 33 88999554433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-10 Score=126.60 Aligned_cols=190 Identities=9% Similarity=0.061 Sum_probs=109.0
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcc
Q 001386 851 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 930 (1088)
Q Consensus 851 d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 930 (1088)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456889999999999999999999988876 56666666778888888889999999999887632211111000000
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEE
Q 001386 931 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 931 ~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~ 1010 (1088)
.+.+++.++..++.+.++.++.||..+|+.+..+... . ...++|++..|++++.|+.|+.||..+|+.+.
T Consensus 85 -----~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 85 -----ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp -----TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred -----cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 0111123444333367899999999999988764432 1 24567788899999999999999999999876
Q ss_pred EeccccccCCCCccccccceEEEECCCC---CCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 001386 1011 RILSTAYLRPTTSCLHVYPHAIAAHPLK---PTQFAVGLTNGEVYVIEPNEPGDTWAVL 1066 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~p~d---~~~l~~~~~dg~v~~w~l~~~~~~~~~~ 1066 (1088)
++....+.. .++.+ + ...+++++.||.|+.||....+..|...
T Consensus 155 ~~~~~~~~~------------~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYAA------------SLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEECC------------BCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEecccccC------------ccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 654222111 11222 1 1457788999999999999999899754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.6e-10 Score=122.41 Aligned_cols=191 Identities=8% Similarity=-0.022 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
++..+++++.|+.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678999999999999999999986653 333 3455555667776 577778999999999999998877654422
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.......... ++..+++++.|+.|+.||.++++....+..+. ...++|++..+++++. ++.|+.||..+|+
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence 1100011001 23478888999999999999988877665543 2345678888888765 5679999999998
Q ss_pred eeEEEeccccccccEEEEEEeCCC---CEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
.+..+.... .....+..+. ..+++++.+|.|+.||..+|+.+.....
T Consensus 152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 766654322 1222233332 5678889999999999999999888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.9e-06 Score=86.11 Aligned_cols=224 Identities=12% Similarity=0.047 Sum_probs=143.7
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 397 VSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
..+..++|++++..|..+ ..++.|.+++..++.... .+.........+++.+++.. ++++....+.|.++|+...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999976666555 456799999998754221 22222346789999998664 4555566788999997654
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEec--CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
...............+++.+. ++.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 332222222245677887542 3344444433 468888888754433333233346788999999888877653 3
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
.+.|..+|.........+.+. .....++.. +..++.+. ..+.|.++|..+++.+..+.... .+....+++.|
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~ 260 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL 260 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence 557999998765444433322 234566654 45555554 56899999999999998886532 12357888888
Q ss_pred CCC
Q 001386 633 NGT 635 (1088)
Q Consensus 633 ~~~ 635 (1088)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-06 Score=103.47 Aligned_cols=376 Identities=13% Similarity=0.111 Sum_probs=206.2
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCcc----------E-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
.++.++.++.|.-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|.++++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4666777899999999999999887543211 0 11122 2347888899999999999999988776
Q ss_pred cCCCCc-eEEEEEcc--CCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEecccc------------------------
Q 001386 526 DAPGLG-CTRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL------------------------ 576 (1088)
Q Consensus 526 ~~~~~~-v~~~~~s~--~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 576 (1088)
...... ...+..+| .+..++++.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 543210 00011111 133454443211 1257899999999999887753210
Q ss_pred ----ccccEEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCeeeEEEeCCCCC-------CCCc
Q 001386 577 ----QHNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------PENP 626 (1088)
Q Consensus 577 ----~~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~ 626 (1088)
+......+++.++...++.++.++ .|..+|..+|+.+..++...+. ....
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 001112467888888998888766 3999999999999888753221 1111
Q ss_pred eEEEecCCC---EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 627 RICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 627 ~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
...+..+|+ .++.++.+|.++++|..+++.+......... ....+.+ ..+..........++
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~----- 368 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEK----- 368 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSS-----
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccC-----
Confidence 222334665 6888999999999999999877543322100 0000100 000000000000000
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
......|.......-..++++|+...++....+-...... . . ..|....
T Consensus 369 -------------------~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~-~--~---------~~~~~~~ 417 (668)
T 1kv9_A 369 -------------------EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN-E--G---------KDFVTRK 417 (668)
T ss_dssp -------------------SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC-C--G---------GGCCCCS
T ss_pred -------------------CeeEECCCCccccCCCcceECCCCCEEEEeccccceEeee-e--c---------ccccccc
Confidence 0011111111111122367888877766655442222110 0 0 0010000
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEE-EEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 861 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 861 (1088)
+. . .... ..+..++ ... +|.|..||..+++.+.....+.. .....+.. .+.++++|+.|
T Consensus 418 ~~------~----~g~~-------~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf~g~~d 478 (668)
T 1kv9_A 418 AF------N----TAAG-------FADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAA 478 (668)
T ss_dssp SC------C----CSSC-------GGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTT
T ss_pred cc------c----cCcc-------ccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEEEECCc
Confidence 00 0 0000 0011111 122 47899999999999877664332 22223333 45688889999
Q ss_pred CeEEEEEcCCceeeeeeccccCCe-eEEEECCCCC-EEEEEe
Q 001386 862 STILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 901 (1088)
Q Consensus 862 g~i~lwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~las~s 901 (1088)
|.++.||..+|+.+..++...+.. .-+.+..+|+ +++.++
T Consensus 479 g~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 479 GQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 999999999999998887543211 2244455676 455544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.6e-07 Score=91.87 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=139.1
Q ss_pred CeeEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 800 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
....+++++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 467899999875555543 4789999999999998876332 233456665 3466666677899999999999999
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCe
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 954 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~ 954 (1088)
.++..-.. ....+++||+.|+.+..++.|.++|..+.+......+... +... ..+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~--~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRV--IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Cccc--ccceeEEEE-CCEEEEecCCCCe
Confidence 88863212 1244566888777777788999999988654333222211 1110 135678888 77655554 4689
Q ss_pred EEEEEcCcceeeeeeecCC------------CcCEEEEEEeeCCCEEE-EEeCCCcEEEEEcCCCc
Q 001386 955 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 955 i~vwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~l~-s~s~dg~v~vwd~~~~~ 1007 (1088)
|.+.|..+++.+..+..+- ......++|+|+++.++ ++...+.+.+-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999988865320 13568999999987655 55577888888877653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.7e-06 Score=96.26 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=106.9
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CeEEEEEcCCceeeeeecc--cc--------CCeeEEEEC-CCC--
Q 001386 844 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 894 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~d----------------g~i~lwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg-- 894 (1088)
.+++.+ ...+++.+..+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 45567766655 3899999999999877654 21 1221 2222 567
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------CCCCcc---------------------CCCCeEEEEEcC
Q 001386 895 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT---------------------LAPSETHIQFHK 942 (1088)
Q Consensus 895 -~~las~s~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~---------------------~~~~v~~~~fs~ 942 (1088)
+.++.++.+|.+.+.|..+++..-...+.. ..+... -...-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567778899999999999987543322110 000000 000113567787
Q ss_pred CCCEEEEE----------------------------------------eCCeEEEEEcCcceeeeeeecCCCcCEEEEEE
Q 001386 943 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 982 (1088)
Q Consensus 943 dg~~l~~~----------------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 982 (1088)
+..++.+. ..+.|..||+.+|+.+.+...+ .++..-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77666541 2357999999999987765432 12222223
Q ss_pred eeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 983 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 983 s~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
+..|..++.++.||.++.||..+|+.+.++..
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 44677888899999999999999999988863
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-05 Score=83.49 Aligned_cols=255 Identities=11% Similarity=0.001 Sum_probs=153.7
Q ss_pred CEEEEEeCCCEEEEEEccCCCccc--ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
.+|..+.. +.|+.+++.+..... ....+......+..++|++++.. ++++....+.|.++|+..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 478999988654211 01112222345789999997764 455556678999999876654433333334
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|..++....
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC-
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC-
Confidence 6678887543 345566666678999999876544333333334678899999877776654321 1356888887543
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
....+.... ......+++++++..|+.+. ..+.|.+++.........+... . ....++.. ++.++++....+.
T Consensus 157 ~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~--~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 157 NRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q--YPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp CCEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C--SEEEEEEE-TTEEEEEETTTTE
T ss_pred CcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-C--CceEEEEe-CCEEEEEECCCCe
Confidence 233332111 24678999999877776654 5688999999765444444321 1 22456554 3444444445689
Q ss_pred EEEEeCCCCCccccccccc-CcceeeeecC
Q 001386 646 IKILETPESNSVDAAGVLS-DNLRKLSVNP 674 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p 674 (1088)
|..++..+++.+..+.... .....+++.|
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEEeCCCCCceEEEccccccccceeeecC
Confidence 9999999887766654322 1344455544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-06 Score=88.61 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=143.3
Q ss_pred ceeEEEecCCCC--CeEEEEEcCCCCcEEEEEeC--CCeEEEEEcCCceeeeeecccc-CCeeEEEECCCCCEEEEE-eC
Q 001386 829 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSS-GG 902 (1088)
Q Consensus 829 ~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~--dg~i~lwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~las~-s~ 902 (1088)
.+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++. +..|..+ -.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34555664 443 468999999 6655555443 5799999999999988765221 122345554 4455444 46
Q ss_pred CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCC----CcCE
Q 001386 903 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 977 (1088)
Q Consensus 903 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v 977 (1088)
++.+.++|..+.+.... +....+ . ...+++||+.+.++ .++.|.++|..+.+.+..+..+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~g~~-~-------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTHQMK-D-------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EECCSS-S-------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EECCCC-C-------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 78999999998654332 221101 1 23466788877775 45789999999998887765432 1246
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC---CCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001386 978 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 978 ~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
..+.|. ||+..+....++.|.+-|..+++.+..+......+. .......-+..++|+|+...+++++...+.|++.
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 776555555678999999999999998874321110 0001113457899999444577777788999999
Q ss_pred eCCCCC
Q 001386 1055 EPNEPG 1060 (1088)
Q Consensus 1055 ~l~~~~ 1060 (1088)
++....
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 996643
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=0.0019 Score=81.14 Aligned_cols=570 Identities=11% Similarity=0.080 Sum_probs=279.3
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceeEeccCCCCEEEEEecCCC---CcEEEEEEe---CCCcE
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTI 467 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~---~~l~l~s~s---~d~~i 467 (1088)
-.++++-.+| +|..|+..|.=.+|.+..... +.....+ ..-++|.+++..... .. .+++++ .+|.+
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3567776555 788888888777777764322 1222223 234688888775321 21 233332 46778
Q ss_pred EEEeCCCC-ceeEEecc-CCccEEEEeeee-eCCceEEEEEecCCeEEEEECCCCCceEEecCCC-----CceEEEEEcc
Q 001386 468 KVWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSA 539 (1088)
Q Consensus 468 ~vwd~~~~-~~~~~~~~-~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~ 539 (1088)
++..-.-+ +.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+... ........+ ..+.+-.+ +
T Consensus 406 ~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~ 482 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-A 482 (1158)
T ss_dssp EEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-T
T ss_pred EEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-C
Confidence 87642111 11112210 123444443211 123356776666655 45544221 222111111 11111111 2
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
++ .++=.. ...|++.+...+..+..+.... +..|..++.+. .+++.++ ++.+.++.+..++.......
T Consensus 483 ~~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~- 550 (1158)
T 3ei3_A 483 HQ-QLIQIT-----SASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHT- 550 (1158)
T ss_dssp TT-EEEEEE-----SSCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEE-
T ss_pred CC-eEEEEe-----cCEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeeccc-
Confidence 22 333332 1227777766555555555433 23566665543 4666665 67888888876643322111
Q ss_pred CCCCCCceEEEecC------CCEEEEEeC-CCcEEEEeCCCCCccccccccc-CcceeeeecCCCcceeccccCCceeec
Q 001386 620 GGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVN 691 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~ 691 (1088)
.-...|.|+++.|. +.++++|.. |++++|+++.+.+.+....-.. ....++.+.. +
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~---------------~- 614 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTT---------------F- 614 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE---------------E-
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE---------------e-
Confidence 11235889998763 479999996 9999999998654332111100 1111121110 1
Q ss_pred CCCCCCCCcccccccCccceeccccccC--CCcceeeecCCccccccEEEEEEecCCc-eEEEeccccceEEEEccCCCC
Q 001386 692 EDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDL 768 (1088)
Q Consensus 692 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~v~iw~~~~~~~ 768 (1088)
....++..|-.||.+..+.++... ........+ ...++.-..+...|. .+++.++ .-..++.-+
T Consensus 615 ----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~---- 681 (1158)
T 3ei3_A 615 ----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN---- 681 (1158)
T ss_dssp ----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESS-SCEEEEESS----
T ss_pred ----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECC-CCEEEEEcC----
Confidence 112345555556655444332211 111111111 112332223333332 2333332 222222210
Q ss_pred CCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeE-EEEecC--CCEEEEEeCCcEEEEEcCCcee--EEEecCCCCCeE
Q 001386 769 TLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTAT 843 (1088)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d--g~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~ 843 (1088)
+. +....+ ....+.. ..|+.. ..-++..+++.++|..+.+.+. ++++. -...+.
T Consensus 682 ---------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tpr 740 (1158)
T 3ei3_A 682 ---------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYESPR 740 (1158)
T ss_dssp ---------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEE
T ss_pred ---------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCCCce
Confidence 11 111111 1112222 233321 2345555666788888754322 22222 335677
Q ss_pred EEEEcCCCCcEEEEEeC-------------------------------------------------CCeEEEEEcCCcee
Q 001386 844 SLAFNPHDNNVIAIGMD-------------------------------------------------DSTILIYNARSSEV 874 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~-------------------------------------------------dg~i~lwd~~~~~~ 874 (1088)
.++++| ..+.++++.. -+.|++.|..+.+.
T Consensus 741 ri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~ 819 (1158)
T 3ei3_A 741 KICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEV 819 (1158)
T ss_dssp EEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCE
T ss_pred EEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeE
Confidence 888888 4554443321 12467777777776
Q ss_pred eeeeccc-cCCeeEEE---ECCC-CCEEEEEe----------CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 875 ISKLEGH-SKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 875 ~~~l~~h-~~~V~~l~---~s~d-g~~las~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
+..+.-. ...+.+++ |..+ ..+++.|. ..|.|.++++..++..... -...+ +.+++++
T Consensus 820 i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~-~~~v~------g~v~al~ 892 (1158)
T 3ei3_A 820 LHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA-EKEVK------GAVYSMV 892 (1158)
T ss_dssp EEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE-EEEES------SCEEEEE
T ss_pred EEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE-EEEcC------CcCEEEe
Confidence 6554321 12244443 4333 47888776 3478999999854322111 11112 3566665
Q ss_pred EcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE--cCCCceEEEeccccc
Q 001386 940 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE--ASNLEVQCRILSTAY 1017 (1088)
Q Consensus 940 fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd--~~~~~~~~~~~~~~~ 1017 (1088)
-- +| +|+++..+++++|++...+.++. ...+-..|..+.....|.++++|..-..|.+.. ...+++..... .
T Consensus 893 ~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D- 966 (1158)
T 3ei3_A 893 EF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--D- 966 (1158)
T ss_dssp EE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE--C-
T ss_pred ee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--e-
Confidence 33 23 77778889999999986654431 111111133334434577888888777776654 44443332221 1
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1018 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
....+.+++.|-- ...++.+..+|.+.+.....
T Consensus 967 ------~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 967 ------FNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ------CSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred ------cccccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 1224567777763 36888899999999998865
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.71 E-value=0.0026 Score=79.87 Aligned_cols=573 Identities=9% Similarity=0.019 Sum_probs=277.8
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC----CCEEEE
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGV 413 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d----g~~las 413 (1088)
.++++-.+| +|..|+..|.=.+|.+.....-...-+.+-| --..-++|.+++.... ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 455555566 5788888787777777654210000000000 1113467777776432 235555
Q ss_pred Ee---CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC---CCCcEEEEEEeCCCcEEEEeCCCCceeEEec--cCC
Q 001386 414 AY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1088)
Q Consensus 414 ~~---~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~ 485 (1088)
++ .+|.+++..-.-+-.......+.+ -..++.+.... .+. +|+.+..+.+ .|+.+. ++.+.... +..
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccccccc
Confidence 43 457788765432221111112332 24566665432 233 5665555555 455442 22232221 111
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.....++...-+++ .++=.. ...|++.+.........+..+. ..|...+.+. .+++.+. + +.+..+++..
T Consensus 471 ~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g----~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-G----RALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-T----TEEEEEEEET
T ss_pred CCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-C----CEEEEEEeeC
Confidence 11111111111111 222222 2345666655444444444433 3566555443 4555553 1 2366666665
Q ss_pred CceeEEEeccccccccEEEEEEeCC------CCEEEEEeC-CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec--CCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK--NGT 635 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~ 635 (1088)
++........ -...|.|+++.|. ++++++|.. |++++|+++.+.+.+........ ....++.+.. ...
T Consensus 542 ~~L~~~~~~~--l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~ 618 (1158)
T 3ei3_A 542 QELRQISHTE--MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSH 618 (1158)
T ss_dssp TEEEEEEEEE--CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEE
T ss_pred CceeeecccC--CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCc
Confidence 5433221111 1367999998763 368888886 99999999998777665544321 1223444332 345
Q ss_pred EEEEEeCCCcEEEEeCC--CCCccccc--ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 636 LLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~--~~~~~~~~--~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
+|.+|-.||.+.-+.+. ++...... .-...++.-..+...+ +..++..+ +....
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~---------------------~~~V~a~s-~rp~l 676 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS---------------------TTNVFACS-DRPTV 676 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS---------------------CEEEEEES-SSCEE
T ss_pred EEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCC---------------------ceeEEEEC-CCCEE
Confidence 78899999988665544 33222110 0001111111111000 00111111 11111
Q ss_pred eccccccCCCcceeeecCCccccccEE-EEEEecC--CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 712 VEKPLFARPSECQSLLLPSKVKANKIS-RLTYNNG--GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 712 vw~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~--g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
++... .......+ ....+. ...|+.. ..-++.. .++.++|..++.-.. | .+.
T Consensus 677 iy~~~----~~l~~s~l----~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~----------~------~~~ 731 (1158)
T 3ei3_A 677 IYSSN----HKLVFSNV----NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQK----------L------HIR 731 (1158)
T ss_dssp EEESS----SSEEEEEB----SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSS----------E------EEE
T ss_pred EEEcC----CceEEecc----ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCC----------e------eEE
Confidence 11100 00000000 001111 1223221 1223333 334577776542110 1 011
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEe--------------------------------------------------C
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSAS--------------------------------------------------G 818 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--------------------------------------------------d 818 (1088)
..+ -...+..++++|+.+.++++. .
T Consensus 732 ~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 806 (1158)
T 3ei3_A 732 TVP-----LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEV 806 (1158)
T ss_dssp EEE-----CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEE
T ss_pred EEe-----CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceee
Confidence 111 234566666666655443321 1
Q ss_pred CcEEEEEcCCceeEEEecCCC-CCeEEEE---EcCCCCcEEEEEe----------CCCeEEEEEcCCceeeeee-ccccC
Q 001386 819 GVISLYIVMTFKTILTIMPPS-PTATSLA---FNPHDNNVIAIGM----------DDSTILIYNARSSEVISKL-EGHSK 883 (1088)
Q Consensus 819 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~---~sp~d~~~lasg~----------~dg~i~lwd~~~~~~~~~l-~~h~~ 883 (1088)
+.|++.|..+++.+..+.-.. ..+.+++ |..+...++++|+ ..|.|++|++..+++.... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 237788888887776655333 3344444 4432357899887 3589999999755432221 12467
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC-CeEE--EEEc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLA--IYEA 960 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d-~~i~--vwd~ 960 (1088)
+|++++-- +|++||.. ...|++|++...+.....+ ... . .|..+.....++++++|.- ..+. -|+.
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~~~----~---~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-NHY----N---NIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-EEC----C---CSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-ecc----c---cEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 88887643 45555433 4789999998654222111 101 0 1333344446778888632 3344 4555
Q ss_pred CcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 961 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 961 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
..++....-...+...++++.|-.++ .++.+..+|.+.+.....
T Consensus 956 ~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 55554443334457889999998665 666788999999997665
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.7e-06 Score=95.42 Aligned_cols=376 Identities=11% Similarity=0.015 Sum_probs=203.6
Q ss_pred EEEEEeC-CCcEEEEeC-CCCceeEEeccCCcc----------E-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE
Q 001386 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523 (1088)
Q Consensus 457 ~l~s~s~-d~~i~vwd~-~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 523 (1088)
.++.++. ++.|.-+|. .+|+.+.++...... + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3556666 889999999 899998877533210 0 11122 23478888899999999999999887
Q ss_pred EecCCCC----ceEE-EEEccCCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEeccccc-------------------
Q 001386 524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1088)
Q Consensus 524 ~~~~~~~----~v~~-~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1088)
....... .+.+ ... .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 134 455544211 11467999999999988776543200
Q ss_pred ---------------cc-cEEEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCCeeeEEEeCCCCC---
Q 001386 578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 622 (1088)
Q Consensus 578 ---------------~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 622 (1088)
.. ....+++.++...++.++.+ +.|..+|..+|+.+..++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776642 35999999999999888753211
Q ss_pred -CCCce---EEEecCCC---EEEEEeCCCcEEEEeCCCCCcccccccccC--cceeeeecCCCcceeccccCCceeecCC
Q 001386 623 -PENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSVNED 693 (1088)
Q Consensus 623 -~~v~~---v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 693 (1088)
..+.. +....+|+ .++.++.+|.+.++|..+++.+........ ....+..
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 01111 22224674 677888899999999999877654432110 0000000
Q ss_pred CCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCC
Q 001386 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1088)
Q Consensus 694 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~ 773 (1088)
..++.+..... .. .+........|.......-..++++|+...+++...+....++..+..
T Consensus 357 --~~g~p~~~~~~---------~~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~------- 417 (571)
T 2ad6_A 357 --KTGTPVRDPEF---------AT-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP------- 417 (571)
T ss_dssp --TTCSEEECGGG---------CC-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-------
T ss_pred --cCCceeccccc---------CC-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc-------
Confidence 00000000000 00 000001111121111111235788999888888777655554432210
Q ss_pred CCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc
Q 001386 774 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 853 (1088)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 853 (1088)
...+.. .-.....+..+|.+. ....++.|..||..+++.+.++.... .+....+.. .+.
T Consensus 418 -------~~~g~~----------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg 476 (571)
T 2ad6_A 418 -------YRAGQF----------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGG 476 (571)
T ss_dssp -------CCTTSC----------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTT
T ss_pred -------cccCCc----------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-CCC
Confidence 000110 000011122233321 00125778899999998887765332 222222222 345
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeeccccCC-eeEEEECCCCCEEEE
Q 001386 854 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 899 (1088)
Q Consensus 854 ~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~las 899 (1088)
++++++.||.|+.||..+|+.+.++...... -..+.+..+|+.++.
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 6777999999999999999999888643321 122445567765443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.5e-06 Score=99.67 Aligned_cols=268 Identities=11% Similarity=0.072 Sum_probs=166.2
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC------CCEEEE
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS------KHIVQL 422 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~------dg~i~v 422 (1088)
.+++++.|+.|..+|..+|+.+-.... ...... ......++. .+..++++.. +|.|..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~-------~~~~~~---~~~~~~P~v------~~~~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQT-------TDPAKP---YSITGAPRV------VKGKVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEEC-------SCTTSS---CBCCSCCEE------ETTEEEECCBCTTTCCBCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeecc-------CCCCCc---ceecCCCEE------ECCEEEEeCCCCCcCCCCEEEE
Confidence 366778899999999999997754221 000000 000111111 1334544433 588999
Q ss_pred EEccCCCcccceeEecc----------------------------CCCCEEEEEecCCCCcEEEEEEeCCC---------
Q 001386 423 YAYHGGSDARQQLEIDA----------------------------HVGNVNDLAFSAPCKQISVITCGDDK--------- 465 (1088)
Q Consensus 423 wd~~~~~~~~~~~~~~~----------------------------h~~~v~~~~~s~d~~~l~l~s~s~d~--------- 465 (1088)
+|..+|+.+-......+ +......+++.+++. .++.++.++
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~--~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD--LLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHS
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC--EEEEeCCCCCccccCCCC
Confidence 99999986553321111 111123468888877 566666555
Q ss_pred ----------cEEEEeCCCCceeEEecc--CC-------ccEEEEeeeeeCCce---EEEEEecCCeEEEEECCCCCceE
Q 001386 466 ----------TIKVWDAVTGSRTYSFEG--HG-------APVYSLCPHAKENIH---FIFSISVDGKIKAWLYDSLGARV 523 (1088)
Q Consensus 466 ----------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~ 523 (1088)
.|..+|..+|+.+..+.. |. .+.....+. .+|+ .++.++.+|.+.++|..+++.+.
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~--~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN--IDGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE--ETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec--cCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 499999999999987754 22 222222221 1443 68899999999999999888763
Q ss_pred EecCCC------------Cc------------------------eEEEEEccCCCEEEEEeeC-----------------
Q 001386 524 DYDAPG------------LG------------------------CTRMAYSANGRRLFSCGTS----------------- 550 (1088)
Q Consensus 524 ~~~~~~------------~~------------------------v~~~~~s~~g~~l~~~~~~----------------- 550 (1088)
...... .+ -..++++|+...+++...+
T Consensus 339 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~ 418 (668)
T 1kv9_A 339 AEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKA 418 (668)
T ss_dssp EEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSS
T ss_pred cccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccc
Confidence 322111 00 1126788888777653220
Q ss_pred ---------------CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 551 ---------------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 551 ---------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
...++.|.-||+.+|+.+-...... ......+...+..+++++.|+.++.||..+|+.+..
T Consensus 419 ~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 419 FNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp CCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC----CCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 0123779999999999887766433 233334455788999999999999999999999999
Q ss_pred EeCCCCCCCCceEEEecCCCE-EEEEe
Q 001386 616 IDAGGGLPENPRICFNKNGTL-LAVIA 641 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~-l~~~~ 641 (1088)
+...... ...-+.+..+|+. ++++.
T Consensus 495 ~~~~~~~-~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 495 FEAQSGI-VAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EECSSCC-CSCCEEEEETTEEEEEEEE
T ss_pred ecCCCCc-ccCceEEEECCEEEEEEEe
Confidence 8876432 1234566667764 44433
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.8e-05 Score=89.61 Aligned_cols=150 Identities=12% Similarity=0.075 Sum_probs=96.7
Q ss_pred CeEEEEEcCCceeeeeecc--cc--------CCeeEEEEC-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec---
Q 001386 862 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT--- 924 (1088)
Q Consensus 862 g~i~lwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg~---~las~s~Dg~i~iwd~~~~~~~~~~~~~~--- 924 (1088)
+.|.-+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++..-......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999999877643 32 1221 1221 4674 78889999999999999987543222110
Q ss_pred ---------------CCCCc--------cC---------C--CCeEEEEEcCCCCEEEE-Ee------------------
Q 001386 925 ---------------PDGVM--------TL---------A--PSETHIQFHKDQTRFLL-VH------------------ 951 (1088)
Q Consensus 925 ---------------~~~~~--------~~---------~--~~v~~~~fs~dg~~l~~-~~------------------ 951 (1088)
..... .. . ..-..++++|+...+.+ ..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00000 00 0 00124677877665544 21
Q ss_pred ---------------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 952 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 952 ---------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
++.|..||+.+|+.+.+...+. ++..-.....|..+++++.||.++.||..+|+.+.++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 4679999999999887654322 222222334577888899999999999999999998874
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=5e-05 Score=88.64 Aligned_cols=380 Identities=12% Similarity=0.077 Sum_probs=203.3
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeccCCccE---------EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC
Q 001386 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1088)
Q Consensus 458 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1088)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|.-+|.++++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445553449999999999988775432210 11122 2246788889999999999999988765543
Q ss_pred CC----ceE-EEEEcc---CCC-EEEEEeeCC--CCceeEEEEeCCCCceeEEEeccccc--------------------
Q 001386 529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 577 (1088)
Q Consensus 529 ~~----~v~-~~~~s~---~g~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 577 (1088)
.. .+. ...+.. +|+ .++++.... ..++.|+-+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 244 444443211 12567999999999987665432100
Q ss_pred ------------------cccEEEEEEeCCCCEEEEEeC--------------------C----CcEEEEEcCCCeeeEE
Q 001386 578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 578 ------------------~~~v~~~~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 615 (1088)
...-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123567777788887663 2 5899999999999988
Q ss_pred EeCCCCC----CCCc-eEEEe---cCCC---EEEEEeCCCcEEEEeCCCCCcccccccccC--cceeeeecCCCcceecc
Q 001386 616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 616 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~~~~ 682 (1088)
++...+. ..+. -+.+. .+|+ .++.++.+|.++++|..+++.+........ ....+...
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~--------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK--------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence 8653221 0111 12222 4674 788899999999999999987765443211 01111000
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEE
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~ 762 (1088)
.+.........+.. +. . ..+........|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-----------~---~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-----------P---GQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-----------T---TCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-----------c---cccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 000000111122211111123567888877777766554444433
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCe
Q 001386 763 WPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA 842 (1088)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 842 (1088)
.+.. ...| ....-..+...|++ ...+|.|..||+.+++.+.+........
T Consensus 440 ~~~~--------------~~~g------------~~~~g~~~~~~p~~----~~~~G~l~A~D~~tG~~~W~~~~~~~~~ 489 (582)
T 1flg_A 440 EEVS--------------YTKG------------SAYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEHLPLW 489 (582)
T ss_dssp CCCC--------------CCTT------------SCCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEESSCCC
T ss_pred cccc--------------ccCC------------CceeccceeecCCC----CCCcceEEEEECCCCCEEEEecCCCCCc
Confidence 2110 0011 11111122222331 0125789999999999887765332211
Q ss_pred E-EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCe-eEEEECCCCCE-EEEEe
Q 001386 843 T-SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNI-LVSSG 901 (1088)
Q Consensus 843 ~-~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~-las~s 901 (1088)
. .++. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+. +++.+
T Consensus 490 ~g~~~t---agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 490 AGVLAT---AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp SCCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ccceEe---CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 1 1222 34578889999999999999999998887644322 22666677764 44433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-05 Score=89.54 Aligned_cols=178 Identities=10% Similarity=-0.074 Sum_probs=111.1
Q ss_pred EEEEecCCCEEEEEe-C----------------CcEEEEEcCCceeEEEecCC--C-------CCeEEEEEcCCCC---c
Q 001386 803 CFALSKNDAYLFSAS-G----------------GVISLYIVMTFKTILTIMPP--S-------PTATSLAFNPHDN---N 853 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~-d----------------g~i~iwd~~~~~~~~~~~~~--~-------~~i~~l~~sp~d~---~ 853 (1088)
.+++.++...+..+. + +.|..+|..+|+.+..++.. . ....-+.... ++ +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 356667666666554 1 25999999999998877532 1 1111122234 56 4
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeecccc-------------CCe--------------------------eEEEECCCC
Q 001386 854 VIAIGMDDSTILIYNARSSEVISKLEGHS-------------KRV--------------------------TGLVFSDAL 894 (1088)
Q Consensus 854 ~lasg~~dg~i~lwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~dg 894 (1088)
+++.++.+|.++++|..+|+.+...+... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999999876654211 111 246788887
Q ss_pred CEEEEEe-------------------------------------CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEE
Q 001386 895 NILVSSG-------------------------------------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 937 (1088)
Q Consensus 895 ~~las~s-------------------------------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 937 (1088)
.++.... .+|.|..||+.+++..-.... .. .+..
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~-------~~~~ 468 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KF-------AAWG 468 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SS-------CCCS
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--CC-------Cccc
Confidence 7776653 357899999988764322211 11 1112
Q ss_pred EEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEE
Q 001386 938 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 990 (1088)
Q Consensus 938 ~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 990 (1088)
..+...+..+.+ +.|+.|+.||..+|+.+.++..++......+.+..||+.++
T Consensus 469 ~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 469 GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 222333444444 57899999999999999887655432223345678887544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-05 Score=92.32 Aligned_cols=385 Identities=11% Similarity=0.041 Sum_probs=204.0
Q ss_pred EEEEEeC-CCcEEEEeC-CCCceeEEeccCCcc-----------EEEEeeeeeCC--ceEEEEEecCCeEEEEECCCCCc
Q 001386 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKEN--IHFIFSISVDGKIKAWLYDSLGA 521 (1088)
Q Consensus 457 ~l~s~s~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 521 (1088)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+..+ ...++.++.|+.|..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4566666 888999999 899998877543211 01123311111 12378888999999999999998
Q ss_pred eEEecCCCC----ceEE-EEEccCCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEecccccc----------------
Q 001386 522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 578 (1088)
Q Consensus 522 ~~~~~~~~~----~v~~-~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 578 (1088)
+........ .+.+ ..+ .++ .+++++... ..++.|+-+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 776554321 1111 111 144 444443211 125679999999999887765432000
Q ss_pred ------------------ccE-EEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 579 ------------------~~v-~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
..+ ..+++.++...++.++.+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134566777888887765 379999999999998887543210
Q ss_pred ----CCce-EEEe---cCC---CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecC
Q 001386 624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1088)
Q Consensus 624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 692 (1088)
.... +.+. .+| ..++.++.+|.+.++|..+++.+.........-..-.+. ...+......
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 567778899999999999998765443211000000000 0000000000
Q ss_pred CCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCC
Q 001386 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1088)
Q Consensus 693 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~ 772 (1088)
...+ .+.....+..|.......-..++++|+...+++...+....++-....
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------ 424 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------ 424 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence 0000 000111122222222223346789999888877766543333211100
Q ss_pred CCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEE-EEEcCCC
Q 001386 773 EVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD 851 (1088)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~~sp~d 851 (1088)
...+.... ..-..+..+|.+........|.|..||+.+++.+............ ++. .
T Consensus 425 --------~~~g~~~~----------g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t---a 483 (599)
T 1w6s_A 425 --------YKAGQFFV----------GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT---A 483 (599)
T ss_dssp --------CCTTSCCC----------CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE---T
T ss_pred --------ccCCccee----------cccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe---c
Confidence 00011000 0000011112110000002467888999999888776422111111 222 3
Q ss_pred CcEEEEEeCCCeEEEEEcCCceeeeeeccccCCe-eEEEECCCCCE-EEEEe
Q 001386 852 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNI-LVSSG 901 (1088)
Q Consensus 852 ~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~-las~s 901 (1088)
+.+++.|+.||.++.||.++|+.+.+++-..+.+ .-+.+..+|+. +++.+
T Consensus 484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 4577779999999999999999998886443222 22555567754 44433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.63 E-value=0.0034 Score=76.64 Aligned_cols=571 Identities=13% Similarity=0.081 Sum_probs=299.3
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|.++.-..+|...++ +.+| +..||-..-+.... . .......|.++....+| .|..|
T Consensus 22 n~V~~I~qD~~G~lWig--T~~G-L~ryDG~~~~~~~~--------------~----~~~~~~~i~~i~~d~~g-~lWig 79 (758)
T 3ott_A 22 SVVSCFLQDSEGLIWIG--SNKG-LFSYDGYSTQQHFT--------------Y----GENNNTRIYCGVIIDNT-YLYMG 79 (758)
T ss_dssp CCEEEEEECTTSCEEEE--ESSC-EEEECSSCEEECSC--------------T----TSTTSSCEEEEEEETTT-EEEEE
T ss_pred ceEEEEEECCCCCEEEE--ECCC-ccccCCCceEEEEc--------------c----CCCCCceEEEEEEcCCC-cEEEE
Confidence 47999999999974443 4555 55666322110000 0 01124568888877766 56666
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec----cCCccEEE
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE----GHGAPVYS 490 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~----~~~~~v~~ 490 (1088)
+.+| +..||..+++.... .......|.++.. .+|. +..++.+ -+..+|..+++...... .....|.+
T Consensus 80 T~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~ 150 (758)
T 3ott_A 80 TDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYS 150 (758)
T ss_dssp ETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEE
T ss_pred eCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEE
Confidence 6666 88999887542211 1112335777654 3554 4445545 58889987765432211 12345776
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-cC----CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
+.. +.++.+.+ ++.+ -+..++..+....... .. ....|.++...+++..|..++. +-+..+|..++
T Consensus 151 i~~--d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~~~ 221 (758)
T 3ott_A 151 IIR--TKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPSTG 221 (758)
T ss_dssp EEE--CTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETTTT
T ss_pred EEE--cCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCCCC
Confidence 654 44554444 5544 4667776654432211 11 1224788888887776555542 12888998877
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC------CCCCCceEEEecCCCEEEE
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l~~ 639 (1088)
+........ ...|.++....+|...+ |+. +-+.+++..+++.. .+.... ....|.++....+|.+- +
T Consensus 222 ~~~~~~~l~---~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-i 294 (758)
T 3ott_A 222 QIKQTEAFH---NNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIW-L 294 (758)
T ss_dssp EEEEEEEEE---EEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEE-E
T ss_pred eEEeccCCC---CCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEE-E
Confidence 543322111 24688888777766554 454 45888888766543 222111 11236667666666544 4
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
|+..| +.++.... ...... .. .
T Consensus 295 GT~~G-l~~~~~~~--~~~~~~----------~~----------------------------------------~----- 316 (758)
T 3ott_A 295 GTDYG-ISLSRYNS--ALQFIP----------IS----------------------------------------Q----- 316 (758)
T ss_dssp EESSS-EEEECCCC---CEEEE----------HH----------------------------------------H-----
T ss_pred EeCCc-ccccccCC--ceeEEe----------cc----------------------------------------c-----
Confidence 44555 44332211 000000 00 0
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
.........|.++....+|...+. +.+| +..++...+.. .....+..... ...-...
T Consensus 317 --------~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~-----~~~~~~~~~~~--------~~~l~~~ 373 (758)
T 3ott_A 317 --------ITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER-----HDAIWYRMGDK--------TYPLSHN 373 (758)
T ss_dssp --------HSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC-----CCCEEECTTCS--------SSCCSCS
T ss_pred --------CCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc-----ceeEEeccCCc--------CCCCCCC
Confidence 000001235677777777775544 4445 33333221100 00001110000 0001245
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEe--cC----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS- 872 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~- 872 (1088)
.|.++.-.++|.+.+.. ++-+..||..+++...-. .. ....|.++...+ ++. |-.|+..+-+.++|..+.
T Consensus 374 ~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~ 450 (758)
T 3ott_A 374 RIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLM 450 (758)
T ss_dssp CEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEcccccc
Confidence 68899888888876654 667999998877544321 11 234678888876 554 555776666888886531
Q ss_pred -----eee--eeec---c-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc
Q 001386 873 -----EVI--SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 941 (1088)
Q Consensus 873 -----~~~--~~l~---~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 941 (1088)
... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++... +.. ... .....+.++...
T Consensus 451 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~-~~~~~~~~i~~d 525 (758)
T 3ott_A 451 QSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DEL-TGEKSPNYLLCD 525 (758)
T ss_dssp HCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTS-CGGGCEEEEEEC
T ss_pred ccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCc-CCCcccceEEEC
Confidence 111 1111 1 12358999999999987644444458888988754322 111 110 001247888889
Q ss_pred CCCCEEEEEeCCeEEEEEcCcceeeeeeecC-CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC
Q 001386 942 KDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1020 (1088)
Q Consensus 942 ~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1020 (1088)
.+|.+.+.+. +.+..|+..+++...-...+ ....|.++... +|. |-.++..| +..+|..+..... +. ++.
T Consensus 526 ~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~----~~~ 596 (758)
T 3ott_A 526 EDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN----MTN 596 (758)
T ss_dssp TTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C------CC
T ss_pred CCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec----CCC
Confidence 9998887664 56888987766533210111 13567777763 665 44455555 7778888776432 11 111
Q ss_pred CCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1021 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
. ... .++...+ +| .|..|+.+| +..+++..
T Consensus 597 ~----~~~-~~~~~~~-~G-~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 597 K----RFT-SLLFDPK-ED-CVYLGGADG-FGISHSNL 626 (758)
T ss_dssp C----CCS-EEEEETT-TT-EEEEECBSE-EEEEEC--
T ss_pred C----cee-eeEEECC-CC-cEEEecCCc-eEEEChhh
Confidence 1 111 2222333 44 466677777 45556644
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.58 E-value=6e-06 Score=82.89 Aligned_cols=186 Identities=12% Similarity=0.104 Sum_probs=126.7
Q ss_pred CCeeEEEEecCCCEEEEEe-CC--cEEEEEcCCceeEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
.....+.|+ ++.++.+++ +| .|+.+|+.+++.+..+...... .-.+++. ++++.+....++.+.+||..+.+.
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 334788998 666555555 44 7999999999999888644322 2335554 445666666789999999999999
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCC
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 953 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~ 953 (1088)
+.++.... ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..+.. .++
T Consensus 120 ~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 120 VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSS
T ss_pred EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCC
Confidence 99887532 223344677777766667889999998866443322221 11111 134557776 77766555 567
Q ss_pred eEEEEEcCcceeeeeeecCC-----------CcCEEEEEEeeCCCEEEEEeC
Q 001386 954 HLAIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 954 ~i~vwd~~~~~~~~~~~~~h-----------~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
.|.+.|.++|+.+..+...- ..-...+||+|+++.|++.+.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999988764321 235688999999888877664
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-06 Score=85.58 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=129.8
Q ss_pred eeEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCe--eEEEECCCCCEEEEEeCCCc
Q 001386 830 KTILTIMPPSP--TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV--TGLVFSDALNILVSSGGDAQ 905 (1088)
Q Consensus 830 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V--~~l~~s~dg~~las~s~Dg~ 905 (1088)
+.+.++. |.. ....+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. ... ..+++..+ +..+..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCE
Confidence 3444553 443 45788997 4678888889999999999999988776 22 233 33555433 44444456889
Q ss_pred EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecC-CC---cCEEEE
Q 001386 906 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPI-SS---VPISQA 980 (1088)
Q Consensus 906 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~-h~---~~v~~l 980 (1088)
+.+||..+.+........ .+ ...+++|++.|.++ .+++|.++|..+.+.+..+... +. ..+..+
T Consensus 118 v~V~D~~Tl~~~~ti~~~-~e----------GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-GE----------GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEEETTTTEEEEEEECS-SC----------CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEECCcCcEEEEEeCC-Cc----------eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 999999986644332221 11 12344678888775 4778999999999988776542 22 245667
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC---CccccccceEEEECCCCCCEEEEE
Q 001386 981 TFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT---TSCLHVYPHAIAAHPLKPTQFAVG 1045 (1088)
Q Consensus 981 ~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~d~~~l~~~ 1045 (1088)
.|. ||+..+..-.+..|.+-|..+|+.+..+......+.. ......-+..||++|+...+++||
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 776 7765555546889999999999999988855322111 001112346799999555566655
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.58 E-value=6.2e-06 Score=82.80 Aligned_cols=185 Identities=14% Similarity=0.070 Sum_probs=129.6
Q ss_pred EEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeccCCccE-EEEeeeeeCCceEEEEEecCCeEEEEECCCCC
Q 001386 444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1088)
Q Consensus 444 v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 520 (1088)
...+.|+ ++. ++.+.+.+| .|+++|+++|+.+.++....... ..+++ .. +...+..-.++.+.+||.++.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence 4778888 554 666777665 89999999999998886433221 22433 32 3455555668999999999999
Q ss_pred ceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc--ccccEEEEEEeCCCCEEEEEeC
Q 001386 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 521 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
.+..+...... ..+++|++.|+... +...|.++|..+.+.+..+..... .-..++.+.|. +|...+..-.
T Consensus 119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 88877764432 34457888887753 356799999999999888765320 01335567776 6654444446
Q ss_pred CCcEEEEEcCCCeeeEEEeCCCC----------CCCCceEEEecCCCEEEEEeC
Q 001386 599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+..|.+.|..+|+.+..+...+- ....+.+|++|+++.|.+.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 88999999999999999876421 123478999998877776664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-05 Score=98.34 Aligned_cols=248 Identities=10% Similarity=-0.006 Sum_probs=135.0
Q ss_pred Cceeeeec-CCCCeEEEEEcccC----cEEEEecCCC-cceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 336 ~V~~v~~s-pdg~~lla~g~~dg----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99996554444333 5999999998 63321 0 10 1134688999999
Q ss_pred EEEEEeCC-----CEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEe-CCCcEEEEeCCCCc-ee--E
Q 001386 410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 479 (1088)
Q Consensus 410 ~las~~~d-----g~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s-~d~~i~vwd~~~~~-~~--~ 479 (1088)
.|+....+ ..|.++++.++...... .+. ........+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 25888888776432111 222 223456788999999963333322 23468888988763 22 3
Q ss_pred Ee-ccCCccEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEeeCC
Q 001386 480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 480 ~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
.+ ........++.|+ .++.+++....+ ..|..+|+.+...... +..+.. .+..+. +++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~--~~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA--VRSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE--ECSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE--EECCEEEEEEE-e
Confidence 33 3334444554432 233444454443 2566677664222112 222333 334444 44666665543 2
Q ss_pred CCceeEEEEeC-------CCCceeEEEeccccccccEEEEEE----eCCCCEE-EEEeCC---CcEEEEEcCCCee
Q 001386 552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL 612 (1088)
Q Consensus 552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~s~d---g~i~iwd~~~~~~ 612 (1088)
++...|+++++ .+++..+.+.... ...+..+.+ ++++..+ ++.+.. ..+..+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 44667888886 4444133332211 112233322 3455544 333322 4577778777653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-05 Score=82.25 Aligned_cols=238 Identities=11% Similarity=0.062 Sum_probs=146.9
Q ss_pred CeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecC--------------------CCCCeEEEEEcCCCCcEEEEE
Q 001386 800 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP--------------------PSPTATSLAFNPHDNNVIAIG 858 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~--------------------~~~~i~~l~~sp~d~~~lasg 858 (1088)
...+++++++|.++.++. ++.|..|+..+++.. .+.. ....+..+++.+++++ |.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 456788999998566665 788999988765432 2210 0135788999973454 4555
Q ss_pred eCCCeEEEEEcCCceeeeeec----c-ccCCeeEEEECC-CCCEEEEEeC-----------------CCcEEEEEcCCCc
Q 001386 859 MDDSTILIYNARSSEVISKLE----G-HSKRVTGLVFSD-ALNILVSSGG-----------------DAQIFVWDVDGWG 915 (1088)
Q Consensus 859 ~~dg~i~lwd~~~~~~~~~l~----~-h~~~V~~l~~s~-dg~~las~s~-----------------Dg~i~iwd~~~~~ 915 (1088)
...+.|..+|..+++. ..+. + .......+++.+ +|++.++... ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688899876643 2221 1 123478899999 9988776533 3678888887654
Q ss_pred eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCcce--eeeeeecCCCcCEEEEEEeeCCCEEEE
Q 001386 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFT 991 (1088)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~s 991 (1088)
.... ..... ....++|+|||+.|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|.+.++
T Consensus 177 ~~~~--~~~~~-------~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 177 TTLL--LKELH-------VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEEE--EEEES-------CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEE
T ss_pred EEEe--ccCCc-------cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEE
Confidence 3221 11111 24579999999976664 45789999987521 1111111 123 788999999987666
Q ss_pred EeC----------CCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 992 SFV----------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 992 ~s~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
... .+.|..+|. .|+.+..+....-.. -..+..+++. ++.++++....+.|.++++....
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~------~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA------GEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT------TSCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCc------cccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 544 466888886 477766665221100 1123445553 56777777788999999986544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-05 Score=77.83 Aligned_cols=210 Identities=10% Similarity=0.113 Sum_probs=133.1
Q ss_pred eeEEEecCCC--CCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceeeeeeccccCC-eeEEEECCCCCEEE-EEeCC
Q 001386 830 KTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILV-SSGGD 903 (1088)
Q Consensus 830 ~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~la-s~s~D 903 (1088)
+.+.++ .|. .....+.|++ +.++.+.+.+| .|+.+|+.+++.+..+.-.... -..+++. +..|. ..-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 445555 355 3467899985 56666666654 9999999999998877543221 1234443 44444 44568
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecC-CC---cCEE
Q 001386 904 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPI-SS---VPIS 978 (1088)
Q Consensus 904 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~-h~---~~v~ 978 (1088)
+.+.++|..+.+........ + . ...+.+|+..|.++ .+++|.++|..+.+.+..+..+ +. ..+.
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~---~-~-------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYP---G-E-------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp SEEEEEETTTTEEEEEEECS---S-C-------CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCcCcEEEEEeCC---C-C-------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 89999999986644322221 1 1 13344677766664 4678999999999888776543 21 3455
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCc---cccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 979 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS---CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 979 ~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
.+.+. +|+..+..-.+..|.+.|..+|+.+..+......+.... ....-+..||++|+...+++||-.=-.++--.
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 66655 676555554678999999999999999886654433211 11123478999995555555554434444444
Q ss_pred C
Q 001386 1056 P 1056 (1088)
Q Consensus 1056 l 1056 (1088)
+
T Consensus 233 ~ 233 (243)
T 3mbr_X 233 L 233 (243)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-06 Score=84.50 Aligned_cols=184 Identities=9% Similarity=0.080 Sum_probs=125.1
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 876 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~ 876 (1088)
.....+.|+. +.++++.+ +|.|+++|+++++.+..+ -... ..-.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 3456788873 44444444 688999999999998887 2222 22346665 45666667788999999999999999
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeE
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 955 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i 955 (1088)
++..- ..-..++ +|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|+..|.. .++.|
T Consensus 131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeE
Confidence 88753 2223444 67888887777889999999886644433322211111 135567776 77666555 46789
Q ss_pred EEEEcCcceeeeeeecC------------CCcCEEEEEEeeCCCEEEEEe
Q 001386 956 AIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 956 ~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~s 993 (1088)
.+.|.++|+.+..+..+ ...-...+|++|+++.|++.+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998876432 124568899999877666554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.6e-05 Score=81.51 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=138.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC-C-eEEEEEcCCceee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI 875 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-g-~i~lwd~~~~~~~ 875 (1088)
.....++++++|+++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4577899999999766664 788999998753 333332 335688999999 77766655432 2 5777787887653
Q ss_pred eeec-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee---ee--cCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 876 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ--TPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 876 ~~l~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.... ........++..+++..+++...++.|..+|..++....... +. ...+.. .....+ ++|+++|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 3222 112233556666666556655568888888876542111000 00 001111 123455 899987776
Q ss_pred E--eCCeEEEEEcCc-cee--eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCcc
Q 001386 950 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1024 (1088)
Q Consensus 950 ~--~d~~i~vwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1024 (1088)
+ ..+.|.+|++.. ++. ...+.. ......+++++||.+.++....+.|.+++.. |+........ .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~----- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QG----- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--GT-----
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cc-----
Confidence 4 457899999874 332 111111 1345668999999887776678899999975 6653221100 01
Q ss_pred ccccceEEEEC---CCCCCEEEEEeCCC
Q 001386 1025 LHVYPHAIAAH---PLKPTQFAVGLTNG 1049 (1088)
Q Consensus 1025 ~~~~~~~~~~~---p~d~~~l~~~~~dg 1049 (1088)
.-.+.+++|. | |++.|.++...+
T Consensus 254 -~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp -CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred -cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1347789998 7 666666655443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-05 Score=84.04 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=147.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEec-----------------cCCCCEEEEEecC-CCCcEEE
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV 458 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~-----------------~h~~~v~~~~~s~-d~~~l~l 458 (1088)
....+++|+++|+++.++..++.|..||..+++. ..+.... .....+..+++.+ +++ |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence 4566789999999788888889999999876542 2111000 0123578999998 665 4
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecc-----CCccEEEEeeeeeC-CceEEEEEec-----------------CCeEEEEE
Q 001386 459 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL 515 (1088)
Q Consensus 459 ~s~s~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~s~~~-----------------dg~i~iwd 515 (1088)
+.+...+.|..+|..++.. ..+.. .......+++ .+ +|.+.++... +|.|..||
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444445588899776543 22211 1123566766 45 5656555432 36788888
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEE
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l 593 (1088)
..+........ .......++++++|+.|+++.. ....|..++..... ....+.... + ...+++.++|+..
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW 243 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence 76554332211 1123456899999998777643 24569999887531 122222222 3 6788999999877
Q ss_pred EEEeC----------CCcEEEEEcCCCeeeEEEeCCCC--CCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 594 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 594 ~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
++... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++....+.|..+++..
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 66544 467888887 4777777765432 234566666 4666666666778899988763
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.9e-05 Score=76.38 Aligned_cols=187 Identities=10% Similarity=0.039 Sum_probs=126.6
Q ss_pred CCCeeEEEEecCCCEEEEEe-C--CcEEEEEcCCceeEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001386 798 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 873 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~ 873 (1088)
......+.|+. +.++.+.. + +.|+.+|+.+++.+..+.-.... --.+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 44567899986 44444444 3 47999999999999888644332 2345554 45666667789999999999999
Q ss_pred eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eC
Q 001386 874 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 952 (1088)
Q Consensus 874 ~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d 952 (1088)
.+.++.... .-..++ +|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 999887532 224444 567776666668889999998866443322221 11110 134556655 77766555 56
Q ss_pred CeEEEEEcCcceeeeeeecC------------CCcCEEEEEEeeCCCEEEEEeC
Q 001386 953 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
+.|.+.|.++|+.+..+..+ ...-...++++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 79999999999998876432 1235688999998887776654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.6e-05 Score=79.03 Aligned_cols=228 Identities=13% Similarity=0.099 Sum_probs=138.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCC-cEEEEeCCC
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKVWDAVT 474 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~-~i~vwd~~~ 474 (1088)
.....++|+++|+++++-..++.|..||..++. .. . + .....+..+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977776688899999987532 11 1 1 2234688999999998 444443 333 477778788
Q ss_pred CceeEEecc-CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE-e-------c--CCCCceEEEEEccCCCE
Q 001386 475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 543 (1088)
Q Consensus 475 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~g~~ 543 (1088)
|+....... .......++. ..++..+++...++.|.++|......... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875432221 1222334443 23444455555688888888765422111 0 0 111123444 889988
Q ss_pred EEEEeeCCCCceeEEEEeCCC-Cce--eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1088)
|+++.. ....|..++... ++. ...+... .....+++.++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 355799999864 332 1222111 235668899999877777778899999975 65533222222
Q ss_pred CCCCCceEEEe---cCCCEEEEEeCC
Q 001386 621 GLPENPRICFN---KNGTLLAVIANE 643 (1088)
Q Consensus 621 ~~~~v~~v~~s---~~~~~l~~~~~d 643 (1088)
......+++|. |+++.|.+++..
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccCCceEEEEecccCCCCEEEEECCC
Confidence 22346889998 887777776654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00062 Score=73.92 Aligned_cols=250 Identities=10% Similarity=-0.021 Sum_probs=154.8
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
.+..+|.+..+++. ++++ . ...|+..++....... +......+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~-~-~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA-N-RIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE-C-BSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee-c-ccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEE
Confidence 34567777777553 4443 2 3568777776543221 1113345889999986665554
Q ss_pred E-eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 414 ~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
+ ...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 4 467889999998764222 12222234578899886664 455666678899999775543333333345567888
Q ss_pred eeeeCCceEEEEEecC-CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
+.+. ++.++++-... +.|...+++.................++++|++..|+.+-. +...|..+|.........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8543 44555565555 78888888765444433333445788999998888887642 3557999997654333333
Q ss_pred eccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
.... .....+++. .+..+++-...+.|..++..+|+....+..
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 3222 456677773 444445555677888888777776666653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00046 Score=74.29 Aligned_cols=278 Identities=9% Similarity=0.052 Sum_probs=152.4
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
..+.++.+.+++..+++ +..|.+ |....+. +-|.... .........+.++.+.+ +..++
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i--~~s~DgG---------~tW~~~~--------~~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL--METRDGG---------QTWEPRT--------LVLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE--EEESSTT---------SSCEECC--------CCCSCCCCEEEEEEEET-TEEEE
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE--EEeCCCC---------CCCeECC--------CCCCCCCccEEEEEecC-CeEEE
Confidence 46888888877776664 455544 2221111 1122111 00001244678899986 55666
Q ss_pred EEeCCcEEEEEcCCceeEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee-eeeccccCCeeEEEE
Q 001386 815 SASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVF 890 (1088)
Q Consensus 815 ~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~-~~l~~h~~~V~~l~~ 890 (1088)
++..+.|.. ....|+.-.... .+...+..+++.+ ++.+++++ .+|.|+. ....|+.- ....++...+..+++
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence 666664433 333333333322 2334577888876 66666655 4565432 22223221 112345567899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeee
Q 001386 891 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 891 s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~ 970 (1088)
.+++.+++.+...+..+-+|-.. . ....+.... . ..+..++++++++.++++.++.+++.+...|+.-....
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~gG-~--tW~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPGQ-T--AWEPHNRTT--S---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTTC-S--SCEEEECCS--S---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCB
T ss_pred cCCCcEEEEECCCcEEEEeCCCC-C--ceeECCCCC--C---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeEecc
Confidence 99998887665444333344211 1 111222111 1 25789999999998888888888877544354433322
Q ss_pred cC---CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeC
Q 001386 971 PI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1047 (1088)
Q Consensus 971 ~~---h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~ 1047 (1088)
.+ +...+.++++.+++..++++ .+|.| .+..+.|+.-..+......+. .+ .++.|.+ +..+++++.
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~--~~v~~~~--~~~~~~~G~ 311 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NF--YKILFFS--PDQGFILGQ 311 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CC--CEEEEEE--TTEEEEECS
T ss_pred CCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----Ce--EEEEEEC--CCceEEEcC
Confidence 12 23468899999888776655 57777 456666654433331111111 12 3466654 356778889
Q ss_pred CCcEEEEeC
Q 001386 1048 NGEVYVIEP 1056 (1088)
Q Consensus 1048 dg~v~~w~l 1056 (1088)
+|.|.-++-
T Consensus 312 ~G~i~~~~~ 320 (327)
T 2xbg_A 312 KGILLRYVT 320 (327)
T ss_dssp TTEEEEECC
T ss_pred CceEEEEcC
Confidence 998776653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00042 Score=76.48 Aligned_cols=248 Identities=10% Similarity=-0.019 Sum_probs=154.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE-EE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VA 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la-s~ 414 (1088)
.-.|.+..+.+. ++++ . ...|+..++.++.... +......+..++|++.+..|. +-
T Consensus 78 ~~~C~~~~~~~~-l~~~-~-~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEPV-LLFA-N-RIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCCE-EEEE-C-BSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccce-eEee-c-CccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 455666666443 4443 2 3678888887654332 112334688999998655555 44
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 567889999998764221 12222234567888876664 45556667789998876554333343334566788885
Q ss_pred eeCCceEEEEEecC-CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 495 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 495 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
+. ++.++++-... +.|...+++.................++++|++..|+.+-. ....|..+|.........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 43 34455555555 78888888765554444444445788999998888887642 355799999765443333332
Q ss_pred cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
.. .....+++ ..+..+++-...+.|..++..+|+....+..
T Consensus 287 ~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 45677777 3444555556778888888777777777654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-05 Score=94.61 Aligned_cols=278 Identities=10% Similarity=0.031 Sum_probs=154.9
Q ss_pred eeeecC-CCCeEEEEEcccC-----------cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 339 ~v~~sp-dg~~lla~g~~dg-----------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
++++.| +|+ +++.|+.+. .+.+||..+++-..... ....+.....++++..
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 777 677776432 57889988876432111 0122333444678889
Q ss_pred CCCEEEEEeC-CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CC-----CcEEEEeCCCCceeE
Q 001386 407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRTY 479 (1088)
Q Consensus 407 dg~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d-----~~i~vwd~~~~~~~~ 479 (1088)
+|+.+++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++-..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCccee
Confidence 9999999984 4579999998764221 11111111 112455667888 677777 44 569999998876432
Q ss_pred EeccCC-ccEE----EEeeeeeCCceEEEEEecCC---------eEEEEECCCCCceEEecCC---------CCceEEEE
Q 001386 480 SFEGHG-APVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMA 536 (1088)
Q Consensus 480 ~~~~~~-~~v~----~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~---------~~~v~~~~ 536 (1088)
. .... .+.. ...+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 329 ~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 329 L-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp E-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred C-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 2 1000 0000 0001 12334455555444 4677887765533221111 11223444
Q ss_pred Ecc-CCCEEEEEeeCCCC----c---eeEEEEeCCCCceeEEE--eccccccccEEEEEEeCCCCEEEEEeCC-------
Q 001386 537 YSA-NGRRLFSCGTSKEG----E---SFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------- 599 (1088)
Q Consensus 537 ~s~-~g~~l~~~~~~~~~----~---~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d------- 599 (1088)
|.. +++.+++|+.+... . ..+.+||..+....... .... .....+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 543 67777776642210 1 15888998877655443 1111 1223445667899999998754
Q ss_pred ----CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 600 ----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 600 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
..+.+||..+.+....-..........+..+.|++++++.|+.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987665432211111112234556789999999885
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.35 E-value=6.9e-05 Score=89.74 Aligned_cols=118 Identities=11% Similarity=0.163 Sum_probs=75.2
Q ss_pred EEEEcc-CCCEEEEEeeCCCC-------ceeEEEEeCCCCceeE--EEeccccccccEEEEEEeCCCCEEEEEe-CCCcE
Q 001386 534 RMAYSA-NGRRLFSCGTSKEG-------ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVI 602 (1088)
Q Consensus 534 ~~~~s~-~g~~l~~~~~~~~~-------~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i 602 (1088)
.+++.+ +++.++.++.+.+. ...+.+||+.+++... .+.... .....++++..++..++.|+ .+..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--DMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--CCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC--CCccccccCCCCCCEEEeCCCCCCce
Confidence 456677 88888887754321 2368999998876432 222211 12334567778999988887 45689
Q ss_pred EEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe-CC-----CcEEEEeCCCC
Q 001386 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPES 654 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iwd~~~~ 654 (1088)
.+||..+.+....-...... .-.+++..+++++++.|+ .+ ..+.+||..++
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred EEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 99999887655432222211 123566677999999988 34 45777877654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00021 Score=72.35 Aligned_cols=207 Identities=8% Similarity=0.011 Sum_probs=134.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+.|.|-.+++..++|+|++..|.++...++.|...|.. |+.++..+ +.+ ......|++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 45667767999999999888788888889999999998 77665422 222 256888999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEec------cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC---CCcee
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRT 478 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~---~~~~~ 478 (1088)
+.++++.-.++.+.++++.....+....... ........++|.|+++. |+++.......+|.+. .+..+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence 9877776677889999987655322111111 23445689999999985 3334433334444432 12222
Q ss_pred EEec-------cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC---------CceEEEEEccCCC
Q 001386 479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR 542 (1088)
Q Consensus 479 ~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~ 542 (1088)
..+. .+...+.+++++|. .+++++.....+.+.++|.+.. .+..+.... .....|+|.++|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 2221 12345678888875 5678888888899999987644 333333221 2567899999998
Q ss_pred EEEEEeeCCCCceeEEEEeC
Q 001386 543 RLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~ 562 (1088)
..++ +. .+.++.+..
T Consensus 237 lyIv-sE----~n~~y~f~~ 251 (255)
T 3qqz_A 237 IYIV-SE----PNRFYRFTP 251 (255)
T ss_dssp EEEE-ET----TTEEEEEEC
T ss_pred EEEE-cC----CceEEEEEe
Confidence 5555 32 234666543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0012 Score=71.61 Aligned_cols=249 Identities=11% Similarity=-0.028 Sum_probs=153.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
...+|.+..+++ +|+.+. ...|+..++.+.... .+......+..++|.+.+.. ++++-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 345566666643 444443 344888887765322 12223345789999987664 45555567889999987765
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
....+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+...... ...
T Consensus 107 ~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred ceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence 44433322234456676432 445666767778999999886655544444445678999999877777664321 266
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1088)
|...+...... ..+.... ....+.++++|++..|+.+. ..+.|..+++........+... ......+++ .++.
T Consensus 184 I~r~~~dG~~~-~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ 257 (349)
T 3v64_C 184 IEASSMDGSGR-RIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDS 257 (349)
T ss_dssp EEEEETTSCSC-EESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTE
T ss_pred EEEEeCCCCCc-EEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCE
Confidence 88888764332 2322111 24678999998777776654 5678999998654333333222 223467777 4555
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 636 LLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
++++-...+.|..++..+++....+.
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEec
Confidence 66666667888888866665554443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00062 Score=68.97 Aligned_cols=218 Identities=14% Similarity=0.138 Sum_probs=134.6
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 834 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 834 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
.+.+-...+..+++.|+++.++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555556899999999666677778889999999998 887777642 22457889999999887776677889999987
Q ss_pred CCce-eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC-CeEEEEEcC---cceeeeeee------cCCCcCEEEEE
Q 001386 913 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAE---ELTCLKQWF------PISSVPISQAT 981 (1088)
Q Consensus 913 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d-~~i~vwd~~---~~~~~~~~~------~~h~~~v~~l~ 981 (1088)
.... .........-+..........++++|+++.|.++.+ ....+|.+. ....+.... ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6542 111222211111122245789999999977777533 233444443 111111110 11244678899
Q ss_pred EeeCCCE-EEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 982 FSCDCRM-VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 982 fs~dg~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
+.|.... ++.......+.++|.. |+.+..+........- ....-.+-.|+|+| +|+++++ +.-+.+++++-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l-~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL-SHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC-SSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc-ccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 9996544 5555566788889966 5566555433211000 00112346799999 7886555 67776666643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0016 Score=69.61 Aligned_cols=238 Identities=10% Similarity=-0.038 Sum_probs=144.2
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC---CceeE-EeccCC
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY-SFEGHG 485 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~---~~~~~-~~~~~~ 485 (1088)
+|+.+.. ..|+..|+.+++... .+ .....+..++|.+++.. ++++-...+.|..+|+.. +.... .+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444433 448888998765332 22 23456789999987764 455556678999999876 22222 232222
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34466776432 44566666778899999987655444444344567899999977777665431 125688888753
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.....+.... -...+.+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 153 ~~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp CCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3333332211 25678999999877776655 5678999998753332222222222234577775 455666666678
Q ss_pred cEEEEeCCCCCccccc
Q 001386 645 RIKILETPESNSVDAA 660 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~ 660 (1088)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8988887766554443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00089 Score=73.87 Aligned_cols=247 Identities=11% Similarity=-0.036 Sum_probs=153.0
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
-.|.+..+ ..+|+.+. ...|+..++.++.... +......+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCccc-cceeEeec-CccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 34555555 33454443 3458888887654322 2233346889999987664 4555566788999998766544
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
..+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+..... ....|+
T Consensus 152 ~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEE
T ss_pred EEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEE
Confidence 333322233455666432 44566666777889998887655544444444567889999988877766432 136788
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
.++.............. ...+.++++|++..|+.+. ..+.|..+++........+... ......+++ .++.++
T Consensus 229 r~~~dG~~~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly 302 (386)
T 3v65_B 229 ASSMDGSGRRIIADTHL---FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY 302 (386)
T ss_dssp EEETTSCSCEEEECSSC---SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred EEeCCCCCcEEEEECCC---CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEE
Confidence 88876543333332222 4578999998777776654 5678999998654333333322 223467777 445566
Q ss_pred EEEeCCCcEEEEeCCCCCcccccc
Q 001386 638 AVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
++-...+.|..++..+++....+.
T Consensus 303 ~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeeCCCCeEEEEECCCCcceEEEc
Confidence 666677888888866666555444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.002 Score=68.78 Aligned_cols=232 Identities=9% Similarity=-0.062 Sum_probs=139.6
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-eCCCEEEEEEccCC---Cccc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR 432 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~-~~dg~i~vwd~~~~---~~~~ 432 (1088)
..|+..|+.+++.... . .....+..++|++++..|..+ ..++.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6788889887654321 1 134568899999876655554 45688999998862 2111
Q ss_pred ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC-CeE
Q 001386 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 511 (1088)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i 511 (1088)
. .+...-.....+++.+.+.. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222235678999876654 4555566789999997654433333333345678887543 34444444333 688
Q ss_pred EEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCC
Q 001386 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1088)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1088)
...+++...........-.....+++++++..|+.+-. ....|..+|...... +.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence 88888654443333333456788999999888887653 245799999874333 3332111011345677774 344
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 592 QILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
.+++-...+.|..++..+|+.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 55555567788888887776665554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00025 Score=79.44 Aligned_cols=247 Identities=12% Similarity=0.045 Sum_probs=144.4
Q ss_pred CCeeEEEEec-CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CC----eEEEEEcCC
Q 001386 799 EAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARS 871 (1088)
Q Consensus 799 ~~v~~~~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg----~i~lwd~~~ 871 (1088)
.....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|+++.. ++ .+.+++. .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 3467899998 455566665 4789999998766443 333556788999999 7775555544 22 3444443 3
Q ss_pred ceee--eeeccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 872 SEVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 872 ~~~~--~~l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
+... ..+.. ......++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.
T Consensus 214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEE
T ss_pred Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEE
Confidence 3222 22222 23457789999 77777766677889999998754321 1121111 1357899999999666
Q ss_pred EE--eCCeEEEEEcCc--cee--eeeeec-----C---------CCcCEE-EEEEe--------eCCCEEEEEeCCCcEE
Q 001386 949 LV--HETHLAIYEAEE--LTC--LKQWFP-----I---------SSVPIS-QATFS--------CDCRMVFTSFVDGTLS 999 (1088)
Q Consensus 949 ~~--~d~~i~vwd~~~--~~~--~~~~~~-----~---------h~~~v~-~l~fs--------~dg~~l~s~s~dg~v~ 999 (1088)
++ ..+.|..++... ++. +..+.. + .-.... .++.. ++|.+.++=...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 54 557899887653 222 111110 0 011233 45553 3355555555678899
Q ss_pred EEEcCCCceEEEecccc-ccCC------CCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1000 IHEASNLEVQCRILSTA-YLRP------TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1000 vwd~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.++ .+|.......... .... .....=.+|..++++|+++.++++=...+.|+.+++.
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 988 5675544332110 0000 0000112578899999556666666667788888764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.025 Score=68.87 Aligned_cols=530 Identities=11% Similarity=0.033 Sum_probs=274.2
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|.++....+|.. -.|+.+ -+..||..+++.... .......|.++.. .+| .|..+
T Consensus 63 ~~i~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTYL--YMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTEE--EEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCcE--EEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 36888888888863 334444 478899877532110 0112245777765 344 56666
Q ss_pred eCCCEEEEEEccCCCcccceeEe-c-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccC----Ccc
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEI-D-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH----GAP 487 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~-~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~----~~~ 487 (1088)
+.+ -+..+|..+++... .... . .....|.++....+|. +..++.. -+..+|..+++..... ... ...
T Consensus 119 t~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (758)
T 3ott_A 119 ALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLF 192 (758)
T ss_dssp ETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCC
T ss_pred cCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC---EEEEeCC-CHhhCccCCCceEEecCCCccccccce
Confidence 666 48889987754221 1000 0 1234688888888887 3334444 4778887776543211 111 123
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
|.++.. +.++..|..|+. +-+..+|..+.............|.++....+|...+.. .. -+.+++..++..
T Consensus 193 i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-----Gl~~~~~~~~~~ 263 (758)
T 3ott_A 193 VNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-----GLYVYHNDTTPL 263 (758)
T ss_dssp EEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-----EEEEECCTTSCC
T ss_pred eEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-----ceeEEecCCCcE
Confidence 676655 434444444553 457778876544322211223457888888888776654 21 278888877654
Q ss_pred eEEEec----cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC-----CCCCCCCceEEEecCCCEEE
Q 001386 568 KRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----GGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 568 ~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~l~ 638 (1088)
...... .......|.++....+|.. -.|+..| +.++.... ....+.. ......|.++.-..+|.+.+
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi 339 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF 339 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE
Confidence 332211 0112346888887777654 4455556 54443321 1111110 01112466777777776554
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccccc
Q 001386 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 718 (1088)
|+.+| +..++..++.... + ..+....
T Consensus 340 -Gt~~G-l~~~~~~~~~~~~-~--------------------------------------------------~~~~~~~- 365 (758)
T 3ott_A 340 -GGANG-LIRFTDPAGERHD-A--------------------------------------------------IWYRMGD- 365 (758)
T ss_dssp -EETTE-EEEESCTTSSCCC-C--------------------------------------------------EEECTTC-
T ss_pred -eeCCc-ceeecccccccce-e--------------------------------------------------EEeccCC-
Confidence 44544 5555544321100 0 0000000
Q ss_pred CCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
. +.......|.++.-..+|...+. +. +-+..|+...... ..+. ..........
T Consensus 366 -~--------~~~l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~--------~~~~--------~~~~~~~~~~ 418 (758)
T 3ott_A 366 -K--------TYPLSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQF--------IHYN--------IVDNTGTYNT 418 (758)
T ss_dssp -S--------SSCCSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEE--------EEEE--------EECCC--CBS
T ss_pred -c--------CCCCCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcE--------EEee--------cCCCcCCCCC
Confidence 0 00002245677777777774443 33 4566666432211 0000 0000000023
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCc-----eeE---EEec---C-CCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIGMDDSTILI 866 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~sp~d~~~lasg~~dg~i~l 866 (1088)
..|.++...++|.+.+....+-+.++|..+. ... ..+. + ....|.++...+ ++.+.+.++..+-+..
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence 4688888888887666555667888886531 111 1111 1 224588999988 6776653333455888
Q ss_pred EEcCCceeeeeecc---ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 867 YNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 867 wd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
+|..+++....... ....+.++....+|.+.+. +..| +..++..++.... +. ..+.. ...|.++... +
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~--~~~i~~i~~~-~ 568 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS--NNEILSMTCV-K 568 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----CCEEEEEEE-T
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--ccceEEEEEC-C
Confidence 99887765432211 1346788888888888764 4555 7888876644221 11 11111 1357777764 6
Q ss_pred CCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEe-eCCCEEEEEeCCCcEEEEEc
Q 001386 944 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 944 g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|++.+++ ++.+..+|..+.+...--.. ...+....+. +||. |..|+.+|-+. ++.
T Consensus 569 g~lWi~t-~~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl~~-f~p 624 (758)
T 3ott_A 569 NSIWVST-TNGLWIIDRKTMDARQQNMT--NKRFTSLLFDPKEDC-VYLGGADGFGI-SHS 624 (758)
T ss_dssp TEEEEEE-SSCEEEEETTTCCEEEC--C--CCCCSEEEEETTTTE-EEEECBSEEEE-EEC
T ss_pred CCEEEEC-CCCeEEEcCCCceeEEecCC--CCceeeeEEECCCCc-EEEecCCceEE-ECh
Confidence 6655555 55688889887664321111 1223334443 4555 55577777544 443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00018 Score=87.31 Aligned_cols=200 Identities=6% Similarity=-0.035 Sum_probs=114.0
Q ss_pred CCCC-CeEEEEEC-CCCCEEEEEeCC-----CEEEEEEccCC-CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-
Q 001386 394 DPGV-SVNRVVWS-PDGSLLGVAYSK-----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 464 (1088)
Q Consensus 394 ~h~~-~V~~l~~s-~dg~~las~~~d-----g~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d- 464 (1088)
+|.- .+...+|| |||++||.+... ..|+++|+.+| +.+.. .+.. ....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEECC
Confidence 4553 78899999 999999976432 25999999998 63321 1211 1346899999985 3333333
Q ss_pred ----CcEEEEeCCCCcee--EEecc-CCccEEEEeeeeeCCceEEEEEec---CCeEEEEECCCCC--c--eEEecCCCC
Q 001386 465 ----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG--A--RVDYDAPGL 530 (1088)
Q Consensus 465 ----~~i~vwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~--~--~~~~~~~~~ 530 (1088)
..|.++++.++... ..+.. .......+.+ ++||++|+..+. ...|.++|+.+.. . .........
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 36888898877532 23322 2233445555 667877776653 3458888887753 2 222222333
Q ss_pred ceEEEEEccCCCEEEEEeeCC-CCceeEEEEeCCCC-ceeE-EEeccccccccEEEEEEeCCCCEE-EEEeCCCc--EEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKR-TYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKI 604 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~--i~i 604 (1088)
...++.|+ +|..|+..+... .+...|+.++..++ .... .+.... ...+..+.+. ++.+ ++...++. |.+
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~--~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE--DVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS--SEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC--CcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 44444443 366666655432 34567888888753 2222 222211 1234445444 4454 45666775 445
Q ss_pred EEc
Q 001386 605 WDM 607 (1088)
Q Consensus 605 wd~ 607 (1088)
+++
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 564
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0029 Score=70.07 Aligned_cols=239 Identities=10% Similarity=-0.022 Sum_probs=150.2
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeccCC
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1088)
+|+.+ ....|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888888764322 2334567889999987664 4455556788999998652 2233333334
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+..|+..... ....|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 55677777542 44566666778899999988766555555445567899999987777765421 1356888887654
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.........- ...+.+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECCC---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 4333333222 4678999998888777764 5678999998755443333332222233466663 345556666678
Q ss_pred cEEEEeCCCCCcccccc
Q 001386 645 RIKILETPESNSVDAAG 661 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~ 661 (1088)
.|..++..+++....+.
T Consensus 312 ~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLA 328 (400)
T ss_dssp SEEEEESSSCCCCEEEE
T ss_pred eEEEEEcCCCCceEEEe
Confidence 88888877776655544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00037 Score=78.05 Aligned_cols=248 Identities=11% Similarity=0.030 Sum_probs=146.3
Q ss_pred CeeEEEEecC--CCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEEcCCc
Q 001386 800 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 872 (1088)
Q Consensus 800 ~v~~~~~s~d--g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~i~lwd~~~~ 872 (1088)
....++++|+ +..|.++. .+.|+.+|..+++.... .........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44555554 48899999987765544 44556789999999 77755444321 1 2333333222
Q ss_pred ee-eeeeccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 873 EV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 873 ~~-~~~l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
.. ...+. .-.....++++| +|.+.++-..++.|+.+|..++.... ........ .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 11 01121 233456789999 67766666677889999988655311 11111111 123579999999966654
Q ss_pred --eCCeEEEEEcC--cceee--eeeec--C------------CCcCEEEEEE---------eeCCCEEEEEeCCCcEEEE
Q 001386 951 --HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1001 (1088)
Q Consensus 951 --~d~~i~vwd~~--~~~~~--~~~~~--~------------h~~~v~~l~f---------s~dg~~l~s~s~dg~v~vw 1001 (1088)
..+.|+.++.. ++... ..+.. + .-.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45689998765 33211 11110 0 1234677999 6677777766677889999
Q ss_pred EcCCCceEEEeccccccCCC-Cc------cccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1002 EASNLEVQCRILSTAYLRPT-TS------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1002 d~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
+. +|..............+ .. ..=-+|..++++|.++.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 66544333211100000 00 0113478899995477777776777899888774
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0052 Score=65.99 Aligned_cols=282 Identities=11% Similarity=0.021 Sum_probs=147.9
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..+.+|.|.+++. ++++|. .|.| +...+.|+.=..... ........+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-E
Confidence 3799999988887 566654 4544 333333431110000 0112345788999986 44444 4
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeccCCccEEEEee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCP 493 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~ 493 (1088)
+..+.|.. ..+.|+..........+.+.+..+.+.+++. +++.+ .++.|.. ..+.|+.-. ........+..+.+
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence 55664433 4444544332211112345678888877776 45544 4665432 223343322 22345567788877
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
.+ ++.+++.+...+..+-+|-....-..........+..+++.++++.++++. .+.++..+...|+.-..+..
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBC
T ss_pred cC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccC
Confidence 44 556666554444444444211111111223345788899999988776542 33465553222332222221
Q ss_pred c-ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-CCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 574 L-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 574 ~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
. ......+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++-
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 1 0011357888898876655554 56766 4555556655555422 1123578899986554 556667887766653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0074 Score=66.74 Aligned_cols=250 Identities=8% Similarity=-0.057 Sum_probs=149.7
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-eC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 416 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~-~~ 416 (1088)
.|.+..+.. +++++. ...|+..++.+..... +......+..++|++.+..|..+ ..
T Consensus 76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~ 132 (400)
T 3p5b_L 76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS 132 (400)
T ss_dssp SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence 344443433 344443 2778888887664332 12244678899999866655554 45
Q ss_pred CCEEEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 417 KHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
.+.|+.+++.+..... ....+.........+++.+.+.. +.++-...+.|.+.|++.......+...-.....+++.+
T Consensus 133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 6789999987632100 11122224456788999885554 455666678999999876554444443444567888855
Q ss_pred eCCceEEEEEec-CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc
Q 001386 496 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 496 ~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
. ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-. +...|..+|.............
T Consensus 212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence 3 3444444433 478888888765555444444456788999999888887742 3557999998654443333321
Q ss_pred ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
. .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1 11344566663 33444555567788888877777666664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0086 Score=63.69 Aligned_cols=234 Identities=11% Similarity=-0.012 Sum_probs=142.4
Q ss_pred cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEEccCCCcccce
Q 001386 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHGGSDARQQ 434 (1088)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~~~~~~~~~ 434 (1088)
...|+..++.+........ .. ....+.+++|.+.+..| .+-...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3778999988764211110 11 12356789999855544 4545678899999987642221
Q ss_pred eEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe-cCCeEEE
Q 001386 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKA 513 (1088)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i 513 (1088)
.+...-.....+++.+.+.. ++++-...+.|.++++........+.........+++.+. ++.++.+-. ..+.|..
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIER 149 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-GTEEEEEECSSSCEEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCCEEEE
Confidence 12222245668899876654 4555566788999997654433333334455678888654 233444432 3578888
Q ss_pred EECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE
Q 001386 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 593 (1088)
.+++...........-.....+++++++..|+.+-. ....|..+|...........+.. .....+++.. +..+
T Consensus 150 ~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~ly 222 (318)
T 3sov_A 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DILY 222 (318)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEEE
T ss_pred EEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEEE
Confidence 888755444333333445678999998888887642 35679999986443332333222 4566777753 3444
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 594 LAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
.+-...+.|..++..+|+....+..
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCeEEEEECCCCCceEEEeC
Confidence 5555678899999888877666653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00057 Score=76.47 Aligned_cols=243 Identities=8% Similarity=0.014 Sum_probs=135.3
Q ss_pred EEEEEEecC--CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 737 ISRLTYNNG--GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 737 i~~~~~s~~--g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
...++++++ +..|+.+...+.|+.++...+. +... . ........++++++|.+++
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-------------------v~~~-~---~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-------------------VDIK-T---TNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-------------------EEEE-C---CCCSCEEEEEECTTCCEEE
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCE-------------------EEEe-e---cCCCCccEEEECCCCCEEE
Confidence 457889884 3345554444667766643221 1111 1 1334678999999999544
Q ss_pred EEeCC----c-EEEEEcCCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc--ccCCee
Q 001386 815 SASGG----V-ISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HSKRVT 886 (1088)
Q Consensus 815 ~~~dg----~-i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~--h~~~V~ 886 (1088)
+...+ . +...+...+.. ...+. .......++++|.++.+.++-..++.|+.+|..++.....+.. ....-.
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~ 276 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNF 276 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCE
T ss_pred EcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcc
Confidence 44322 1 33333322111 01111 2234567889985566666666778999999987766333221 122234
Q ss_pred EEEECCCCCEEEEE-eCCCcEEEEEcCC--CceeeeeeeecC---CCC------ccCCCCeEEEEE---------cCCCC
Q 001386 887 GLVFSDALNILVSS-GGDAQIFVWDVDG--WGIQTCRSLQTP---DGV------MTLAPSETHIQF---------HKDQT 945 (1088)
Q Consensus 887 ~l~~s~dg~~las~-s~Dg~i~iwd~~~--~~~~~~~~~~~~---~~~------~~~~~~v~~~~f---------s~dg~ 945 (1088)
.++|+|+|++|..+ ...+.|+.++.+. +.......+... .+. .........++| .++|.
T Consensus 277 ~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ 356 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD 356 (433)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc
Confidence 69999999955544 4567888888763 221111111111 010 001124678999 77787
Q ss_pred EEEE-EeCCeEEEEEcCcceeeeeeecC----------------CCcCEEEEEEe-eCCCEEEEEeCCCcEEEEEcC
Q 001386 946 RFLL-VHETHLAIYEAEELTCLKQWFPI----------------SSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 946 ~l~~-~~d~~i~vwd~~~~~~~~~~~~~----------------h~~~v~~l~fs-~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
+.++ ...+.|+.++. +|......-.+ .-.....++++ ++|.++++=...+.|+..+++
T Consensus 357 lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 357 FYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 7777 45678999985 55433221110 12347789999 566666655566778877654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0012 Score=73.93 Aligned_cols=243 Identities=11% Similarity=0.152 Sum_probs=138.2
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-CC----cEEEE
Q 001386 397 VSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK----TIKVW 470 (1088)
Q Consensus 397 ~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-d~----~i~vw 470 (1088)
.....++++| ++..|.++...+.|+.+|..++... .+.........++|+++++. |+.+.. ++ .+.+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEE
Confidence 3567899998 4666666655578999999876422 23334456889999999984 444433 22 23334
Q ss_pred eCCCCcee--EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC-CCCceEEEEEccCCCEEEEE
Q 001386 471 DAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 471 d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~ 547 (1088)
+ ..+... ..+.. ......+++.+. ++.++++-..++.|..++.+.......... .......++|+|+|++|+.+
T Consensus 211 ~-~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 211 T-RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp E-GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred e-CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 4 334332 22221 122344555332 566677777788999999876554222222 22346789999999977776
Q ss_pred eeCCCCceeEEEEeCCC--Cce--eEEEeccc------------cccccEE-EEEEe--------CCCCEEEEEeCCCcE
Q 001386 548 GTSKEGESFLVEWNESE--GAI--KRTYQGLQ------------LQHNSVS-VVHFD--------TAKDQILAAGDDHVI 602 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~--~~~--~~~~~~~~------------~~~~~v~-~~~~~--------~~~~~l~~~s~dg~i 602 (1088)
.. ....|..++... +.. ...+.+.. ..-.... .++.. +++..+++-...+.|
T Consensus 288 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 288 VV---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp ET---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EC---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 42 245677776542 322 22332210 0011223 45553 335555555567889
Q ss_pred EEEEcCCCeeeEEEeCC-----C---C-------CCCCceEEEecC-CCEEEEEeCCCcEEEEeCC
Q 001386 603 KIWDMNKVQLLTTIDAG-----G---G-------LPENPRICFNKN-GTLLAVIANENRIKILETP 652 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~-----~---~-------~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.++ .+|......... + + ...-..++++|+ +.++++-...+.|+.++.+
T Consensus 365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 9888 456544333210 0 0 113467999984 6555555556778777653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0028 Score=70.74 Aligned_cols=253 Identities=11% Similarity=0.022 Sum_probs=146.1
Q ss_pred CeeEEEEec-CCCEEEEEe--CCcEEEEEcCCceeEEEecCC---CCCeEEEEE-------cCCCCcEEEEEeCCC----
Q 001386 800 AVPCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPP---SPTATSLAF-------NPHDNNVIAIGMDDS---- 862 (1088)
Q Consensus 800 ~v~~~~~s~-dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~d~~~lasg~~dg---- 862 (1088)
....|+|+| +...|.++. .+.|++.|.+++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 567899998 455555554 356999999887766544432 235889999 99 677555555443
Q ss_pred ---eEEEEEcCC-ceee-----eeeccccCCeeEEEECCC-CCEEEEEeCCCcEEEEEcC-------CCcee--------
Q 001386 863 ---TILIYNARS-SEVI-----SKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVD-------GWGIQ-------- 917 (1088)
Q Consensus 863 ---~i~lwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-g~~las~s~Dg~i~iwd~~-------~~~~~-------- 917 (1088)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|++ ++...
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366776443 2221 122221 23457889995 5555566678889999998 54430
Q ss_pred --eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcC--cceee--eeeec-----CC---------Cc
Q 001386 918 --TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTCL--KQWFP-----IS---------SV 975 (1088)
Q Consensus 918 --~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~--~~~~~--~~~~~-----~h---------~~ 975 (1088)
.......... .....++|+|+|++|.++ ..+.|+.++.. ++... ..+.. +. -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222221 235799999999965554 55788886543 33221 11110 10 12
Q ss_pred CEE-EEEEe-------eCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc------cCCCC-cc------ccccceEEEE
Q 001386 976 PIS-QATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY------LRPTT-SC------LHVYPHAIAA 1034 (1088)
Q Consensus 976 ~v~-~l~fs-------~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~~~~-~~------~~~~~~~~~~ 1034 (1088)
... .++.. .+|.++++=.....|+.++ .+|......-.... ...+. .+ .=-.|..|++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 344 44444 4566666666778999998 56754332221100 00000 01 1134788999
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1035 HPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1035 ~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
+++++.++++=...+.|+.+++....
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 98336777766677899999996644
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.87 E-value=0.015 Score=61.75 Aligned_cols=234 Identities=8% Similarity=-0.037 Sum_probs=142.7
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeccCCccEEEEeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~ 494 (1088)
....|+..++.+....... .+ .....+..++|.+.+.. ++++-...+.|..+++..+... ..+...-.....+++.
T Consensus 11 ~~~~I~~i~l~~~~~~~~~-~~-~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATI-VV-GGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp CEEEEEEEETTCTTSCCEE-EE-EEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred ccCeEEEEECCCCceEEEE-Ee-cCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence 3456899999876411111 12 22235678999987664 4555666788999998766422 2222222334556664
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
+. ++.+.++-...+.|.+++++.................+++.|.+..|+.+... ....|...+.............
T Consensus 88 ~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 88 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred cC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCeEEEEECC
Confidence 32 45566666777899999988655544444445567899999987777665421 2456888887643322222221
Q ss_pred ccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
-...+.+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|..++..+
T Consensus 165 ---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 165 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp ---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred ---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 24678999999777776654 567899999865333322221 122345677753 44555655678898898877
Q ss_pred CCcccccc
Q 001386 654 SNSVDAAG 661 (1088)
Q Consensus 654 ~~~~~~~~ 661 (1088)
++....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 76544443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.015 Score=69.80 Aligned_cols=238 Identities=10% Similarity=-0.021 Sum_probs=145.2
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeccCC
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1088)
+|+.+ ....|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+...-
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44444 3445888888765432 23334556789999986664 4555566788999998753 2223333233
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.....|++.+. .+.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 44556777443 33566677778899999998666555554455567899999987777765421 1256888888654
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.....+.... .....|++.+.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+
T Consensus 548 ~~~~lv~~~l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~ 623 (791)
T 3m0c_C 548 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE 623 (791)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred ceEEEEeCCC---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence 4433333322 5688999998877777764 55789999986655444444322222334555532 33444444567
Q ss_pred cEEEEeCCCCCccccc
Q 001386 645 RIKILETPESNSVDAA 660 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~ 660 (1088)
.|...+..+++.+..+
T Consensus 624 ~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 624 AIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred EEEEEeCCCCcceEEe
Confidence 7888887766554444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0064 Score=65.90 Aligned_cols=230 Identities=12% Similarity=0.091 Sum_probs=123.1
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCcee--EEEec---CCCCCeEEEEEcCC---CCcEEEEEeCC-----CeEE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPH---DNNVIAIGMDD-----STIL 865 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~d-----g~i~ 865 (1088)
.....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+|+ ++.+.++-... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356789999999977776689999998 4432 22221 12356889999993 24444444432 6788
Q ss_pred EEEcCCce------eeeeec---cccCCeeEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001386 866 IYNARSSE------VISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 917 (1088)
Q Consensus 866 lwd~~~~~------~~~~l~---~h~~~V~~l~~s~dg~~las~s~D-------------g~i~iwd~~~~~~~------ 917 (1088)
.|+...+. .+..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 122233 111223689999999877765432 3444444432 100
Q ss_pred -----eeeeeecCCCCccCCCCeEEEEEcC-CCCEEEEE-eCCeE------EEEEcCcce------------------ee
Q 001386 918 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV-HETHL------AIYEAEELT------------------CL 966 (1088)
Q Consensus 918 -----~~~~~~~~~~~~~~~~~v~~~~fs~-dg~~l~~~-~d~~i------~vwd~~~~~------------------~~ 966 (1088)
....+. .++. ....++|+| +|.+.++- ..+.+ .+.-+..+. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 1111 256789999 67777762 22221 233223232 11
Q ss_pred eeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe-ccccccCCCCccccccceEEEECCCCCCEEEEE
Q 001386 967 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1045 (1088)
Q Consensus 967 ~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~ 1045 (1088)
..+ .+......++| .+|..+++....+.|...++......... .....+.. .-++..+++.| ||.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 111 22345677888 56776666556677777777654311000 00011111 13567889999 77777665
Q ss_pred e
Q 001386 1046 L 1046 (1088)
Q Consensus 1046 ~ 1046 (1088)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0064 Score=67.85 Aligned_cols=253 Identities=7% Similarity=-0.001 Sum_probs=140.7
Q ss_pred cEEEEEEec-CCceEEEecc-ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE-------
Q 001386 736 KISRLTYNN-GGQAIFALAS-NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL------- 806 (1088)
Q Consensus 736 ~i~~~~~s~-~g~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------- 806 (1088)
....++|+| +...|+.+.. .+.|++.|...+.. ....-...........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-------------------~~l~~~~~~~~~~p~~ia~~~~~~~~ 200 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-------------------SSPLNINTIPTNRIRSIAFNKKIEGY 200 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-------------------EEEECCTTSSCSBEEEEEECCCBTTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-------------------EEEEccCccccCCCcEEEEeeccccc
Confidence 467889998 4555555544 45566665443221 1110000012345889999
Q ss_pred ecCCCEEEEEe-CC-c------EEEEEcCC-ceeE-----EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC--
Q 001386 807 SKNDAYLFSAS-GG-V------ISLYIVMT-FKTI-----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-- 870 (1088)
Q Consensus 807 s~dg~~l~~~~-dg-~------i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~-- 870 (1088)
+++|..|+++. .+ . |.+++... +... ..+.. ......++++|+++.++++-..++.|+.+|+.
T Consensus 201 d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~ 279 (496)
T 3kya_A 201 ADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY 279 (496)
T ss_dssp BCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred CCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence 99999777775 22 2 55665443 1211 12211 12345778899667777777788899999997
Q ss_pred -----Ccee-----------eeee-c-cccCCeeEEEECCCCCEEEEE-eCCCcEEEEEcCCC--ceeeeeeeecC---C
Q 001386 871 -----SSEV-----------ISKL-E-GHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGW--GIQTCRSLQTP---D 926 (1088)
Q Consensus 871 -----~~~~-----------~~~l-~-~h~~~V~~l~~s~dg~~las~-s~Dg~i~iwd~~~~--~~~~~~~~~~~---~ 926 (1088)
++.. ...+ . +.......|+|+|+|++|..+ +....|+.++.+.. .......+... .
T Consensus 280 ~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 280 FKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5543 1121 1 123345789999999964444 56677888666532 11101111111 1
Q ss_pred CCc------cCCCCeE-EEEEc-------CCCCEEEE-EeCCeEEEEEcCcceeeeeeec-------------C------
Q 001386 927 GVM------TLAPSET-HIQFH-------KDQTRFLL-VHETHLAIYEAEELTCLKQWFP-------------I------ 972 (1088)
Q Consensus 927 ~~~------~~~~~v~-~~~fs-------~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~-------------~------ 972 (1088)
+.. ....... .++.. ++|.+.++ ...+.|+.++ .+|.. ..+.. +
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~ 437 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDL 437 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEET
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCc
Confidence 110 0011234 45554 56666666 4667899998 45533 22221 1
Q ss_pred ----CCcCEEEEEEeeC-CCEEEEEeCCCcEEEEEcCCCceEE
Q 001386 973 ----SSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 973 ----h~~~v~~l~fs~d-g~~l~s~s~dg~v~vwd~~~~~~~~ 1010 (1088)
.-.....|+++++ |.++++=+....|+.+++.......
T Consensus 438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1134678999997 6666655567889998887766543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0076 Score=63.27 Aligned_cols=198 Identities=12% Similarity=0.152 Sum_probs=125.8
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCC---CCc---EEEEEeC---CCeEEEEEc--CCceeee
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGMD---DSTILIYNA--RSSEVIS 876 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~---d~~---~lasg~~---dg~i~lwd~--~~~~~~~ 876 (1088)
...+++... .+.+.+||+ +|+.++.+.. +.+..+..-|. +++ ++++... +++|.+|++ .+++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 334444333 678999999 7898888863 56666666651 122 3333333 579999977 4443 44
Q ss_pred eecc------cc-CCeeEEEE--CCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 877 KLEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 877 ~l~~------h~-~~V~~l~~--s~d-g~-~las~s~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
.+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +. ...+.+..+.-. ..+..++..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC----CCcceEEEcC
Confidence 4421 11 56777888 774 44 677788899999999943 22 222333332221 2578899999
Q ss_pred CCCEEEEEeC-CeEEEEEcC-----cceeeeeeecCC-CcCEEEEEE--eeCCC-EEEEEe-CCCcEEEEEcC-CCceEE
Q 001386 943 DQTRFLLVHE-THLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQC 1010 (1088)
Q Consensus 943 dg~~l~~~~d-~~i~vwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~s~s-~dg~v~vwd~~-~~~~~~ 1010 (1088)
....|.++.+ ..|..++.. +++.+..+-.++ ...+..|++ .++|+ ||++++ .+++..|||.. +.+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 8888888754 456666644 345554433344 346888887 56666 777777 67799999997 778888
Q ss_pred Eeccc
Q 001386 1011 RILST 1015 (1088)
Q Consensus 1011 ~~~~~ 1015 (1088)
++...
T Consensus 270 ~f~Ig 274 (355)
T 3amr_A 270 DFRIT 274 (355)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87633
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.038 Score=66.28 Aligned_cols=215 Identities=10% Similarity=-0.051 Sum_probs=130.7
Q ss_pred CCCCeEEEEECCCCCEE-EEEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 395 PGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
....+..|+|.+.+..| ++-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34667899999855554 45456678999998753210 111123323456678999888765 4566667789999997
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC-CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
........+...-.....|++.+. .+.++++-... +.|...+++.......+...-.....|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 755433333334455788888653 33444444333 78888888766555555444457889999998888887742
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
+...|...++........+.... .......+++. +.+|+.+ ...+.|...+..+|+.+..+.
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 24578889886554444443311 11234556653 3344444 456778888877776666654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.016 Score=62.77 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=126.8
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCce-eEEEec---CCCCCeEEEEEcCC---CCcEEEEEeC---C----CeE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 864 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~---d----g~i 864 (1088)
.....++|.|||+++++-.+|.|.+++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 356789999999977776689999997 3454 222221 12356889999993 3555444432 3 578
Q ss_pred EEEEcCCc-------ee-eeeecc-ccCCeeEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001386 865 LIYNARSS-------EV-ISKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ----- 917 (1088)
Q Consensus 865 ~lwd~~~~-------~~-~~~l~~-h~~~V~~l~~s~dg~~las~s~D-------------g~i~iwd~~~~~~~----- 917 (1088)
..|+.... +. +..+.. .......|+|.|||.+.++.+.. |.|.-.+.+.. ..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 88887653 11 122321 11124679999999887775432 33444443321 00
Q ss_pred -eeeeeecCCCCccCCCCeEEEEEcC-CCCEEEEE--eCC--eEEEEEcCcce------------------eeeeeecCC
Q 001386 918 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFPIS 973 (1088)
Q Consensus 918 -~~~~~~~~~~~~~~~~~v~~~~fs~-dg~~l~~~--~d~--~i~vwd~~~~~------------------~~~~~~~~h 973 (1088)
....+. .++. ....++|+| +|++.++- .+. .|.+.. .|. .+..+. ..
T Consensus 187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 257 (354)
T 3a9g_A 187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG-SE 257 (354)
T ss_dssp TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC-CC
Confidence 001111 1222 256899999 67777762 222 243332 222 111110 11
Q ss_pred CcCEEEEEEe-------eCCCEEEEEeCCCcEEEEEcCCC-ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEE
Q 001386 974 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1045 (1088)
Q Consensus 974 ~~~v~~l~fs-------~dg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~ 1045 (1088)
......++|. .+|.++++....+.|...++... ....... .+.. ..-++..+++.| ||.++++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEE
Confidence 3467788883 57777776666778888888753 3321111 1111 123567899999 78777766
Q ss_pred e
Q 001386 1046 L 1046 (1088)
Q Consensus 1046 ~ 1046 (1088)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.014 Score=61.36 Aligned_cols=191 Identities=12% Similarity=0.142 Sum_probs=117.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC--Cce---EEEEEe-c--CCeEEEEECCCCC-ceEEecC
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSIS-V--DGKIKAWLYDSLG-ARVDYDA 527 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~-~--dg~i~iwd~~~~~-~~~~~~~ 527 (1088)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+.+.- +|+ ++++.. . +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4565666788999998 9999988864 556666654420 122 223333 3 5789999875322 2333311
Q ss_pred ------CC-CceEEEEE--ccC-CC-EEEEEeeCCCCceeEEEEeC-------CCCceeEEEeccccccccEEEEEEeCC
Q 001386 528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 528 ------~~-~~v~~~~~--s~~-g~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1088)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45666777 774 44 3444432 456877777 234556666653 46888899999
Q ss_pred CCEEEEEeCCCcEEEEEcC-----CCeeeEEEeCCCCCCCCceEEE--ecCCC-EEEEEe-CCCcEEEEeCC-CCCccc
Q 001386 590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVD 658 (1088)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~ 658 (1088)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+.++.+||.. +.+.+.
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 9999999998777777754 3455555433222235677777 45555 555555 57799999996 444333
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0081 Score=62.46 Aligned_cols=204 Identities=12% Similarity=0.087 Sum_probs=124.8
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEE-ecC----CC--CCeEEEEE---cCCCCcEEEEEeC-----
Q 001386 798 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD----- 860 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---sp~d~~~lasg~~----- 860 (1088)
.....++.|.+....+..++ .++|..||...+..... +.. .. ..+..+.+ .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 34456789988666666665 89999999986544333 221 11 13578999 68 6888876442
Q ss_pred --------CCeEEEEEcC---Cceeeeeec--ccc-----------CCeeEEEECCCCCEEEEEeCC-CcEEEEEcCCCc
Q 001386 861 --------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWG 915 (1088)
Q Consensus 861 --------dg~i~lwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~las~s~D-g~i~iwd~~~~~ 915 (1088)
+..|..||+. +++.+.... +.. .....++..++|+..++++.. +.|...+-+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999999 787664432 211 247899999999999988877 765555554422
Q ss_pred eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCccee--eeeeecC---CCcCEEEE-EEeeCCCE
Q 001386 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPI---SSVPISQA-TFSCDCRM 988 (1088)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~--~~~~~~~---h~~~v~~l-~fs~dg~~ 988 (1088)
. ....+...... .....+.+++.|||+.|++. ..+.+..+|+.+... +..-..+ .......+ .--.+|+.
T Consensus 171 ~-~~~~~~~~~~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 171 V-STFAWESGNGG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp E-EEEEECCCCSS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred E-eeeeecCCCcc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 1 11111111111 11246799999999988883 478899999885333 2111002 12233443 33457887
Q ss_pred -EEEEeCCCcEEEEEcCC
Q 001386 989 -VFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 989 -l~s~s~dg~v~vwd~~~ 1005 (1088)
|++....+.+.+.+-+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 45555566555555443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00036 Score=83.32 Aligned_cols=205 Identities=10% Similarity=0.021 Sum_probs=124.2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCcEEEEEcCC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001386 799 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~ 872 (1088)
..+..++|++.+..|..+. .+.|..+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789999888877775 57899999875 22222222222345678888645666666666789999998765
Q ss_pred eeeeeeccccCCeeEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 873 EVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 873 ~~~~~l~~h~~~V~~l~~s~dg~~las~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
.....+.........|++.|++.+|+.+.. .+.|...+++..... .+.. .. . .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l~~-~~-l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVT-EN-I---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EESC-SS-C---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EEEe-CC-C---CCccEEEEeccCCEEEEE
Confidence 443333333345678999997665554432 267777777653211 1110 11 1 135689999987666654
Q ss_pred --eCCeEEEEEcCcceeeeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 951 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 951 --~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
..+.|.++++... ....+... .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4568999998643 23332221 1223345555443 344455567899999999998877665
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.022 Score=61.71 Aligned_cols=239 Identities=9% Similarity=0.053 Sum_probs=127.8
Q ss_pred CeeEEEEecCCC-EEEEEeCCcEEEEEcCCceeEEEec-------CCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 001386 800 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM-------PPSPTATSLAFNPH---DNNVIAIGMD-------D 861 (1088)
Q Consensus 800 ~v~~~~~s~dg~-~l~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~sp~---d~~~lasg~~-------d 861 (1088)
....++|.|+|+ ++++-..|.|++++.. ++....+. ........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7776668999999854 33221111 12345689999993 3544444332 2
Q ss_pred CeEEEEEcCCc-------ee-eeeec-----cccCCeeEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001386 862 STILIYNARSS-------EV-ISKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 915 (1088)
Q Consensus 862 g~i~lwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~dg~~las~s~D-------------g~i~iwd~~~~~ 915 (1088)
..|..|++..+ +. +..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35777766432 11 11222 132 3579999999766665442 345555544310
Q ss_pred ee----------eeeeeecCCCCccCCCCeEEEEEcC-CCCEEEEE--eCCeEEEEEcCcceee----------------
Q 001386 916 IQ----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL---------------- 966 (1088)
Q Consensus 916 ~~----------~~~~~~~~~~~~~~~~~v~~~~fs~-dg~~l~~~--~d~~i~vwd~~~~~~~---------------- 966 (1088)
.. ...... .++. ....++|.| +|++.++- .++.=.|.-+..+...
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000111 1222 267899999 67766662 2222222222221110
Q ss_pred -------------eeeecCCCcCEEEEEEee-------CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCcccc
Q 001386 967 -------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1026 (1088)
Q Consensus 967 -------------~~~~~~h~~~v~~l~fs~-------dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1088)
....-.+...+..++|.. +|.++++....+.|...++..+....... .+. ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DRG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GGC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CCC
Confidence 000011234677788864 56777766677888888887665433221 110 111
Q ss_pred ccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1027 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1027 ~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
.++..+++.| ||.++++.. ++.=+||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEE
Confidence 3577899999 888666543 223344544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.14 Score=54.84 Aligned_cols=238 Identities=12% Similarity=0.084 Sum_probs=148.2
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
+.-.+|..+ ++|.=. ..++.|+|+++.+.+..+.+ ...|..=.|-. .+.|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis-~~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWIS-LNTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEE-TTEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecC-CCeEEEEc-CC
Confidence 344567776 555543 58899999999988876332 24566666653 44565553 45
Q ss_pred EEEEEEccCCCcccceeEeccCC----CCEEEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeccCCccE
Q 001386 419 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
.|+-|++.+... +...+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.++||.+..
T Consensus 126 aVyHWsi~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCC--chhheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 699999976432 222344443 357777889999963 33332 2467889986654 346788888777
Q ss_pred EEEeeeeeCCce-EEEEEecC---CeEEEEECCCC---Cc-----eEEecC----CCCceEEEEEccCCCEEEEEeeCCC
Q 001386 489 YSLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---GA-----RVDYDA----PGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 489 ~~~~~~~~~~~~-~l~s~~~d---g~i~iwd~~~~---~~-----~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
..+.+...+... .+..+... +.+++-++... .. ...+.. ...-..++..|+.-..++..+.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK--- 278 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 278 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---
Confidence 666553322222 33334332 78999988643 11 111111 1223457778887777777764
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
.|.++++|+.++.++..-+-.. ..|...+......-+++....|.|.--.++...
T Consensus 279 -~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred -CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 6789999999999987766555 666666666666666666666666555555443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00059 Score=81.51 Aligned_cols=234 Identities=9% Similarity=-0.017 Sum_probs=133.4
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC----CceeEEeccCCccEEEE
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~ 491 (1088)
..+.|++.++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........+
T Consensus 384 ~~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp CTTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred CccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 34568888887765332 1122235678899987764 344445567899999875 22222221111223445
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
++.+. ++.++++-...+.|.+.+++.......+.........++++|.+.+|+.+... ....|..+++.........
T Consensus 459 avD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 459 AVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp ECCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCCCEES
T ss_pred EEEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCeeEEE
Confidence 65432 34455665667889999987655444443333455678999977766654321 1256777776543222222
Q ss_pred eccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
... ....+.++++|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++
T Consensus 536 ~~~---l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 536 TEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSS---CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred eCC---CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 211 1456789999886666554 4667899999865433333322122223456676554 4555556678899999
Q ss_pred CCCCCcccccc
Q 001386 651 TPESNSVDAAG 661 (1088)
Q Consensus 651 ~~~~~~~~~~~ 661 (1088)
..+++.+..+.
T Consensus 612 ~~~G~~~~~i~ 622 (699)
T 1n7d_A 612 RLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECCC
T ss_pred ccCCCceEEee
Confidence 87776655544
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00014 Score=57.67 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.8
Q ss_pred CCchhHHHHHHHHHhhhhcCcHHHHHHHHHhcCCC
Q 001386 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1088)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1088)
|+++..||.+||..||+|.||..||-+|+.||++.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999884
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.24 Score=53.05 Aligned_cols=233 Identities=13% Similarity=0.127 Sum_probs=152.9
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeecc
Q 001386 802 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 880 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~~~l~~ 880 (1088)
.+.-++|..+.+|.-...++.|||+++.+.+....-.. .|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 35678899999988888899999999999888877444 455555553 24555554 56899999974 345566655
Q ss_pred cc----CCeeEEEECCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC----C
Q 001386 881 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----T 945 (1088)
Q Consensus 881 h~----~~V~~l~~s~dg~~las~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg----~ 945 (1088)
|. ..|..-..++|.++++..|- .|.+.+|..+.+. -+..+||.. .-..+-.+| .
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCc
Confidence 53 46777888999999886542 4778999998743 445566654 122232333 2
Q ss_pred EEEE-Ee----CCeEEEEEcCcc---e------eeeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 946 RFLL-VH----ETHLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 946 ~l~~-~~----d~~i~vwd~~~~---~------~~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.|.+ +. .+++++-++... . ....+++. ..+-..++..|+.-..+...+.-|.|.+||+.+|.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 2333 32 268999998543 1 11111211 2566678888988888888899999999999999998
Q ss_pred EEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1010 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
.+-+.. ...+. .-+.+. +..-++.....|.|.--.+.+..
T Consensus 294 ~~nrIs--------~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 294 YMNRIS--------GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEECC--------SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred eeeccc--------CCceE--EecccC-CCCcEEEEccCceEEEEEEcccc
Confidence 776511 12222 223333 33456666688988877775543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.013 Score=62.57 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=82.9
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee---
Q 001386 802 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--- 874 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~--- 874 (1088)
+-...+.+|..++.+.++.||.-++.....-+.+... ...+..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 24 R~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 24 RYIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred cEEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCc
Confidence 3446677999999999999999998855445555443 23688899999 899999875 55799988873210
Q ss_pred ---------eeeecc------ccCCeeEEEECCC---CCEEEEEeCCCcEEEEEcCCC
Q 001386 875 ---------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 875 ---------~~~l~~------h~~~V~~l~~s~d---g~~las~s~Dg~i~iwd~~~~ 914 (1088)
...+.- ...+|..+.|+|- +..|++-..|++|++||+...
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 112221 2577999999994 468999999999999999873
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.028 Score=58.49 Aligned_cols=166 Identities=7% Similarity=-0.001 Sum_probs=106.8
Q ss_pred cCCeeEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCc---cCCCCeEEEEE---cCCCCEEEEEe---
Q 001386 882 SKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVM---TLAPSETHIQF---HKDQTRFLLVH--- 951 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~f---s~dg~~l~~~~--- 951 (1088)
..--.++.|.+....|..++ ..++|..|+...+..... ...+.. .....+..+.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~----~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV----VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE----CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE----ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 33445788977544544444 789999999986532221 122211 00013579999 68988888643
Q ss_pred -----------CCeEEEEEcC---cceeeeeeec-C-----------CCcCEEEEEEeeCCCEEEEEeCC-CcEEEEEcC
Q 001386 952 -----------ETHLAIYEAE---ELTCLKQWFP-I-----------SSVPISQATFSCDCRMVFTSFVD-GTLSIHEAS 1004 (1088)
Q Consensus 952 -----------d~~i~vwd~~---~~~~~~~~~~-~-----------h~~~v~~l~fs~dg~~l~s~s~d-g~v~vwd~~ 1004 (1088)
+..|..||+. +++.+..... . -......++..++|...++++.- +.|...+..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 5679999999 7876654321 1 11347899999999999988887 776666655
Q ss_pred CCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1005 NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.. .+..+.... +.. ....-...|+++| ||++|++...+|.+..+|+.
T Consensus 168 G~-~~~~~~~~~--~~~--~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 168 GK-TVSTFAWES--GNG--GQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SC-CEEEEEECC--CCS--SSCCSCSEEEEET-TTTEEEEESSSSSEEEEECS
T ss_pred CC-EEeeeeecC--CCc--ccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCC
Confidence 33 232222111 111 1123345789999 88888888889999999987
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.036 Score=59.92 Aligned_cols=230 Identities=12% Similarity=0.036 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEe---ccCCCCEEEEEecCC---CCcEEEEEEeCC-----C
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAP---CKQISVITCGDD-----K 465 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~d---~~~l~l~s~s~d-----~ 465 (1088)
.....++|.|||+++++ ..+|.|.+++ +++ ......+ .........++|+|+ +.. +.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 45779999999996555 5679999998 343 1211111 122356889999998 554 33333322 5
Q ss_pred cEEEEeCCCCce-----e-EEec---cCCccEEEEeeeeeCCceEEEEEec-------------CCeEEEEECCCC----
Q 001386 466 TIKVWDAVTGSR-----T-YSFE---GHGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL---- 519 (1088)
Q Consensus 466 ~i~vwd~~~~~~-----~-~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~---- 519 (1088)
.|..++...+.. + ..+. +.......++| .++|.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~--~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAF--GPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEE--CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEE--CCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 788888765421 1 1132 11112245666 456665555432 245655555430
Q ss_pred ---------CceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCC-----ceeEEEEeCCC--------C--------cee
Q 001386 520 ---------GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEG-----ESFLVEWNESE--------G--------AIK 568 (1088)
Q Consensus 520 ---------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~-----~~~i~iwd~~~--------~--------~~~ 568 (1088)
.... +.........++|+| +|+..++-. ..+. ...|.+..... + ..+
T Consensus 184 npf~~~~~~~~~i-~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 184 NPFLGRRGARPEV-YSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTTTCTTSCTTE-EEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CcccCCCCCCccE-EEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 1111 111112356789999 555444432 2111 01233332111 0 111
Q ss_pred EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee------eEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL------LTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
..+.. ......++| .+|..+++....+.|...++..... ...+-. ....+..+++.|||.++++...
T Consensus 262 ~~~~~----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 262 YFWPQ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EECTT----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEECS
T ss_pred EecCC----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEeC
Confidence 12211 124566777 4566666555667777777654321 122211 1235688999999987766543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.19 Score=53.27 Aligned_cols=233 Identities=12% Similarity=0.061 Sum_probs=122.1
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeE--EEec----CCCCCeEEEEEcCC---CCcEEEEE--eCCCeEE
Q 001386 798 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIM----PPSPTATSLAFNPH---DNNVIAIG--MDDSTIL 865 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~--~~~~----~~~~~i~~l~~sp~---d~~~lasg--~~dg~i~ 865 (1088)
-.....++|.|||.++++-. .|.|++++..+++.. ..+. ........++|+|+ ++.+.++- ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34578999999999988887 899999987655432 2221 22456789999993 34444432 2455676
Q ss_pred EEEcCCc----------ee-eeeecc-ccCCeeEEEECCCCCEEEEEeC-------------CCcEEEEEcCCCceee--
Q 001386 866 IYNARSS----------EV-ISKLEG-HSKRVTGLVFSDALNILVSSGG-------------DAQIFVWDVDGWGIQT-- 918 (1088)
Q Consensus 866 lwd~~~~----------~~-~~~l~~-h~~~V~~l~~s~dg~~las~s~-------------Dg~i~iwd~~~~~~~~-- 918 (1088)
-|.+..+ +. +..+.. .......|+|.|||.+.++.+. .|.|.-.+.+.. ...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCCC
Confidence 6766541 11 122321 1122467999999988887653 233333333321 000
Q ss_pred ----eeeeecCCCCccCCCCeEEEEEcCCCCEEEE--EeCCeEEEEEcCccee------------------eeeeecCCC
Q 001386 919 ----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC------------------LKQWFPISS 974 (1088)
Q Consensus 919 ----~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~--~~d~~i~vwd~~~~~~------------------~~~~~~~h~ 974 (1088)
...+. .++. ....++|+|+|.+.++ +.++.-.|--+..|.. +..+. .+.
T Consensus 190 Pf~~~~i~a--~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~~ 262 (347)
T 3das_A 190 PFPGSPVYS--YGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS-TDE 262 (347)
T ss_dssp SSTTCCEEE--BCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-TTT
T ss_pred CCCCCeEEe--eCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC-CCC
Confidence 00111 1222 2578999999988887 3443323332232221 11111 111
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001386 975 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1046 (1088)
Q Consensus 975 ~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~ 1046 (1088)
.....++|. +|..++..-..+.|....+..+...... ...+. +..-++..|+..| ||.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~--e~~l~----~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADP--QAFLE----GEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCC--EEEST----TTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecce--EEeec----CCCCCccEEEECC-CCcEEEEEc
Confidence 356677776 4555555545556655566544321100 00111 1112456677777 666655543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.051 Score=57.54 Aligned_cols=231 Identities=10% Similarity=0.018 Sum_probs=122.6
Q ss_pred CEEEEEe---CCcEEEEEcCCceeEE--EecCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEEcCCcee--eeeec
Q 001386 811 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE 879 (1088)
Q Consensus 811 ~~l~~~~---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~i~lwd~~~~~~--~~~l~ 879 (1088)
.+++.|+ ...+.+||..+.+=.. .+........++.+ ++++++.|+.+ ..+.+||..+.+- +..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3445554 3569999998755322 22222222223332 56788888765 6789999988643 33332
Q ss_pred cccCCeeEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e-
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 951 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~- 951 (1088)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+. ... ..+.+..-++++++.+ .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML--TQR------CSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS--SCC------BSCEEEEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc--CCc------ceeEEEEECCEEEEECCCC
Confidence 22222222233 67777877765 45889999886533322111 111 1112222366666663 2
Q ss_pred --------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceEEEecccccc
Q 001386 952 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1018 (1088)
Q Consensus 952 --------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~ 1018 (1088)
-..+.+||..+.+-........ ......+..-+++.++.|+.+ ..+.+||..+......- .+
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS----PM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC----CC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC----CC
Confidence 3458899998775332211111 111112222377777777654 46889999888654321 12
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCCCCccccCC
Q 001386 1019 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPP 1068 (1088)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d-----g~v~~w~l~~~~~~~~~~~~ 1068 (1088)
+.. +....++.. ++.+++.|+.+ ..+.+||+.. .+|...++
T Consensus 235 p~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~--~~W~~~~~ 280 (306)
T 3ii7_A 235 PWK----GVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTET--DKWVANSK 280 (306)
T ss_dssp SCC----BSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTT--TEEEEEEE
T ss_pred CCC----ccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCC--CeEEeCCC
Confidence 211 111222223 46888888865 4677888744 55876543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.23 Score=52.99 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=103.7
Q ss_pred CCCeEEEEEcCC--ceee-eeecc-----ccCCeeEEEECC--CCC-EEEEEe-C--CCcEEEEEcCCCceeeeeeeecC
Q 001386 860 DDSTILIYNARS--SEVI-SKLEG-----HSKRVTGLVFSD--ALN-ILVSSG-G--DAQIFVWDVDGWGIQTCRSLQTP 925 (1088)
Q Consensus 860 ~dg~i~lwd~~~--~~~~-~~l~~-----h~~~V~~l~~s~--dg~-~las~s-~--Dg~i~iwd~~~~~~~~~~~~~~~ 925 (1088)
.+|.|.++|..+ ++.. ..+.+ .......+.+.+ ++. +|..+. . +.+|.+|+++.+... ...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEecc
Confidence 689999999874 2211 12222 234567777755 454 344442 2 567888888764322 2333344
Q ss_pred CCCccCCCCeEEEEEcCCCCEEEEEe----C--------------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC
Q 001386 926 DGVMTLAPSETHIQFHKDQTRFLLVH----E--------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR 987 (1088)
Q Consensus 926 ~~~~~~~~~v~~~~fs~dg~~l~~~~----d--------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~ 987 (1088)
.+... .....+++.++|++.++.. | +.|+-+|. +++. ... ..-.....++||||++
T Consensus 160 ~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~-~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 160 RHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVA-EGFDFANGINISPDGK 233 (355)
T ss_dssp CCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEE-EEESSEEEEEECTTSS
T ss_pred ccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-Eee-cCCcccCcceECCCCC
Confidence 43322 3688999999999888742 1 34545554 3322 212 2235678899999999
Q ss_pred EEEEEe-CCCcEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001386 988 MVFTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIE 1055 (1088)
Q Consensus 988 ~l~s~s-~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d-g~v~~w~ 1055 (1088)
.|+++. ..+.|..|++.. |.+.. .... ..+ -.|-.++.++++|++.+++..+ +.|..|+
T Consensus 234 ~lYvadt~~~~I~~~~~~~~g~l~~-~~~~-~~~-------g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHANWTLTP-LRVL-SFD-------TLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEE-EEEE-ECS-------SEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEEEEeCCCCeEEEEEECCCCcEec-CEEE-eCC-------CCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 877665 568899999864 43321 1111 111 2344577887338888767644 3444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.044 Score=57.91 Aligned_cols=235 Identities=11% Similarity=0.012 Sum_probs=118.5
Q ss_pred CCCEEEEEe-CC-----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCC
Q 001386 407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 475 (1088)
Q Consensus 407 dg~~las~~-~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i~vwd~~~~ 475 (1088)
++..++.|+ .+ ..+.+||..+++-.. ...+.........+ ..+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASV--SLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEE--EETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEE--EECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 358889988764211 11111111111122 23455 56666654 46899998887
Q ss_pred c---eeEE--eccCCccEEEEeeeeeCCceEEEEEecCC-----eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001386 476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 476 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
+ -... +......-..+.+ ++.+++.|+.++ .+.+||..+.+-...-..+.......+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3221 1111111122222 456777776543 578888876543322221211111112223677767
Q ss_pred EEeeCCC-CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEEeCC
Q 001386 546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 619 (1088)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 6664332 13458899998876544322111 1111222222 45666666653 46899999887755443222
Q ss_pred CCCCCCceEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 001386 620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 655 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 655 (1088)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11 12222333467777777755 356778877653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.28 Score=52.88 Aligned_cols=237 Identities=8% Similarity=-0.033 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeE----eccCCCCEEEEEecCC---CCcEEEEEEeC------
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAP---CKQISVITCGD------ 463 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~d---~~~l~l~s~s~------ 463 (1088)
.....|+|.|||+.|.++...|.|++++... .....+.. ..........++|+|+ +..+++.....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3578899999999344556789999998543 21111111 1122346789999996 55433332221
Q ss_pred CCcEEEEeCCCC--ce--eEE-ecc------CCccEEEEeeeeeCCceEEEEEec-------------CCeEEEEECCCC
Q 001386 464 DKTIKVWDAVTG--SR--TYS-FEG------HGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL 519 (1088)
Q Consensus 464 d~~i~vwd~~~~--~~--~~~-~~~------~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~ 519 (1088)
...|..|++..+ .. ... +.. ....-..++| .+||.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~--~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVF--DGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEE--CSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEE--CCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666533 11 111 111 0111245667 456755555433 245666665532
Q ss_pred C------------ceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEe--------CCCC-------------
Q 001386 520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWN--------ESEG------------- 565 (1088)
Q Consensus 520 ~------------~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd--------~~~~------------- 565 (1088)
- ....+.........++|+| +|++.++ -...++...|.+.. ...+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1111111223467899999 5554443 32221112232211 0000
Q ss_pred --------ceeEEEeccccccccEEEEEEeC-------CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-CCCCCCceEE
Q 001386 566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRIC 629 (1088)
Q Consensus 566 --------~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~ 629 (1088)
..+..+.. ......+.|.. ++.++++....+.|...++..++.......- .....+..++
T Consensus 254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 00111111 12466677763 4666666667788888887766544332211 1122578899
Q ss_pred EecCCCEEEEEe
Q 001386 630 FNKNGTLLAVIA 641 (1088)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1088)
+.|||.++++..
T Consensus 330 ~~pdG~lyv~td 341 (353)
T 2g8s_A 330 TGPDGYLYVLTD 341 (353)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999998666543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.33 Score=52.31 Aligned_cols=233 Identities=8% Similarity=-0.064 Sum_probs=120.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEe---ccCCCCEEEEEecCC---CCcEEEEEEeC---C--
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAP---CKQISVITCGD---D-- 464 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~d---~~~l~l~s~s~---d-- 464 (1088)
-.....++|.|||+++++ ..+|.|+++| .+++ ..+..+ .........++|+|+ +.. +.++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCC
Confidence 345788999999985554 5669999887 3443 222121 122356889999998 553 3333321 3
Q ss_pred --CcEEEEeCCCC--c-----ee-EEecc-CCccEEEEeeeeeCCceEEEEEec-------------CCeEEEEECCCC-
Q 001386 465 --KTIKVWDAVTG--S-----RT-YSFEG-HGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL- 519 (1088)
Q Consensus 465 --~~i~vwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~- 519 (1088)
..|..|+...+ . .+ ..+.. .......++| .+||.+.++.+. .|.|..++.+..
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~--~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRF--GPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEE--CTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEE--CCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 56777876654 1 11 11221 1112345666 456766665432 245555554422
Q ss_pred -------CceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCC--------C--------ceeEEEeccc
Q 001386 520 -------GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE--------G--------AIKRTYQGLQ 575 (1088)
Q Consensus 520 -------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~--------~--------~~~~~~~~~~ 575 (1088)
........ -.....++|+| +|+..++-.. .+.-..|.+..... + ..+..+...
T Consensus 181 p~~npf~~~~i~a~G-~rnp~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~- 257 (354)
T 3a9g_A 181 PADNPFPNSPIWSYG-HRNPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE- 257 (354)
T ss_dssp CTTSSSTTCCEEEEC-CSCCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred CCCCCCCCCcEEEEc-cCCcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC-
Confidence 11111111 12345789999 5665544322 22112233332110 0 111122001
Q ss_pred cccccEEEEEEe-------CCCCEEEEEeCCCcEEEEEcCCC-eee--EEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 576 LQHNSVSVVHFD-------TAKDQILAAGDDHVIKIWDMNKV-QLL--TTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 576 ~~~~~v~~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
......++|. .+|.++++....+.|...++... +.. ..+.. .....+..+++.|||.+.++..
T Consensus 258 --~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 --TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp --CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred --CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 1356777883 46666666666778888888753 332 22221 1123578899999997766654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.051 Score=57.39 Aligned_cols=196 Identities=9% Similarity=-0.030 Sum_probs=98.5
Q ss_pred CCCEEEEEeCC-----CEEEEEEccCCCc--ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcEEEEeCCC
Q 001386 407 DGSLLGVAYSK-----HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT 474 (1088)
Q Consensus 407 dg~~las~~~d-----g~i~vwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i~vwd~~~ 474 (1088)
+++.++.|+.+ ..+.+||..+++. ......+......-..+.+ +++ +++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence 57777777754 3589999988651 1111111111111122222 455 56666643 3588899887
Q ss_pred CceeE--EeccCCccEEEEeeeeeCCceEEEEEecC-----CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||+.+..-...-..+.......+..-+++.++.+
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 65432 22211111112222 55677777765 358888887654332211111111111222366666776
Q ss_pred eeCCCC-ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeee
Q 001386 548 GTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 613 (1088)
Q Consensus 548 ~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 613 (1088)
+.+... ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+..
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTT-PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCC-cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 654322 3468999998876544322111 1112222222 55666666654 35677887765543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.17 Score=53.43 Aligned_cols=236 Identities=10% Similarity=-0.045 Sum_probs=117.9
Q ss_pred eEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC----CEEE
Q 001386 348 TLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQ 421 (1088)
Q Consensus 348 ~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d----g~i~ 421 (1088)
.+++.|+.+ ..+.+||..+++-..... +......-.++.+ +++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVFW--DNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEEE--CCEEEEEeCCCCCCcceEE
Confidence 467777653 568888888765332110 1111122222332 67777787754 5688
Q ss_pred EEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC------CcEEEEeCCCCceeEE--eccCCccEEEEee
Q 001386 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYS--FEGHGAPVYSLCP 493 (1088)
Q Consensus 422 vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d------~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~ 493 (1088)
+||..+++-.. ...+.........+.+ +++ +++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 74 ~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 99988764211 1111111111122222 555 56666654 4588999887754322 1111111112221
Q ss_pred eeeCCceEEEEEec---------CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC-ceeEEEEeCC
Q 001386 494 HAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWNES 563 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~-~~~i~iwd~~ 563 (1088)
++.+++.|+. -..+.+||+.+..-...-..........+..-+++.++.++.+... ...+.+||+.
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 4566666654 3447888887664332221111111111222366666666643321 2458899998
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeE
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLT 614 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~ 614 (1088)
+.+-...-. .........++.+ ++..++.|+.+ ..+.+||..+.+...
T Consensus 225 ~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 225 LNEWKMVSP-MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTEEEECCC-CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCcEEECCC-CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 875433211 1111122223333 56677777743 568889988866544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.13 Score=54.28 Aligned_cols=232 Identities=9% Similarity=0.040 Sum_probs=121.6
Q ss_pred CCCEEEEEe-C----CcEEEEEcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCcee--
Q 001386 809 NDAYLFSAS-G----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV-- 874 (1088)
Q Consensus 809 dg~~l~~~~-d----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~i~lwd~~~~~~-- 874 (1088)
++.+++.|+ + ..+.+||..+.+-... +...... .+++.. ++++++.|+.++ .+.+||..+.+-
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 344555554 2 4588999887653222 1111111 122222 567888887653 688999887642
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
+..+......-..+.+ ++++++.|+.++ .+.+||+.+.+-.....+. .... ...+..-+++.++.
T Consensus 92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~------~~~~~~~~~~iyv~ 161 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN--TRRS------SVGVGVVGGLLYAV 161 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS--SCCB------SCEEEEETTEEEEE
T ss_pred CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC--Cccc------CceEEEECCEEEEE
Confidence 2222222222222233 677788887653 4778888876533322111 1111 11122236666666
Q ss_pred E-e-------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceEEEecccc
Q 001386 950 V-H-------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTA 1016 (1088)
Q Consensus 950 ~-~-------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~ 1016 (1088)
+ . -..+.+||..+.+-...........-.+ +...+++.++.|+.+ ..+.+||..+......-.
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred eCCCCCCCccccEEEEEeCCCCcEEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 3 2 2358899988765332211111111111 223377788888764 368899998886543221
Q ss_pred ccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCccccC
Q 001386 1017 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1067 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~l~~~~~~~~~~~ 1067 (1088)
.+.. +.. .+++.. ++.+++.|+.++ .+.+||+.. .+|...+
T Consensus 238 -~~~~----r~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 283 (302)
T 2xn4_A 238 -MNMC----RRN-AGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTT--DKWTVVS 283 (302)
T ss_dssp -CSSC----CBS-CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECS
T ss_pred -CCCc----ccc-CeEEEE--CCEEEEECCcCCCcccccEEEEcCCC--CeEEECC
Confidence 1111 111 122222 468888888764 488888854 4687654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.38 Score=53.75 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=64.0
Q ss_pred CCeeEEEEecCCCEEEEEeCC-cEEEEEcCCceeE--EEecC------CCCCeEEEEEcCC---CCcEEEEEeC------
Q 001386 799 EAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTI--LTIMP------PSPTATSLAFNPH---DNNVIAIGMD------ 860 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg-~i~iwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~lasg~~------ 860 (1088)
.....++|.|+|+++++-..+ .|.+++..+++.. ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 356799999999988887654 6888876555432 22321 2356779999994 4444444332
Q ss_pred ------CCeEEEEEcCCc-------eee-eeecc-ccCCeeEEEECCCCCEEEEEeC
Q 001386 861 ------DSTILIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGG 902 (1088)
Q Consensus 861 ------dg~i~lwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~dg~~las~s~ 902 (1088)
...|.-|+...+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665321 112 12222 1224688999999998887664
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.11 Score=54.73 Aligned_cols=234 Identities=12% Similarity=0.044 Sum_probs=116.0
Q ss_pred CCEEEEEeCC----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCCcee
Q 001386 408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 478 (1088)
Q Consensus 408 g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i~vwd~~~~~~~ 478 (1088)
+..++.|+.+ ..+..||+.+++- .....+......-..+.+ ++. +++.|+.+ ..+.+||+.+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRAGMVYM--AGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccceEEEE--CCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555533 3478888887642 111111111111112222 455 56666654 35888998876533
Q ss_pred EE--eccCCccEEEEeeeeeCCceEEEEEecCC-----eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 479 YS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 479 ~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
.. +......-..+.+ ++.+++.|+.++ .+.+||+.+.+-...-..+.......+..-+++.++.++.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 22 1111111122222 456777777654 477788776543322111111111112223666667666543
Q ss_pred CC---ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 32 3458899998876544322111 1112222222 55666666654 4688999988765543322211
Q ss_pred CCceEEEecCCCEEEEEeCCC-----cEEEEeCCCCC
Q 001386 624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESN 655 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 655 (1088)
.....+..-++++++.|+.++ .+.+||..+.+
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 112223334677788877553 47888887653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.15 Score=54.09 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=119.5
Q ss_pred CCcEEEEEcCCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeC-----C------CeEEEEEcCCcee--eeeeccccC
Q 001386 818 GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHSK 883 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~-----d------g~i~lwd~~~~~~--~~~l~~h~~ 883 (1088)
...+.+||..+.+=.. .+..+.......+... ++++++.|+. . ..+.+||..+.+- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3678999998766332 2222223333333344 6778888874 1 1378899887653 222221111
Q ss_pred CeeEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e-C-
Q 001386 884 RVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E- 952 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~-d- 952 (1088)
.-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+ +... ..+.+...+++.++.| . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVV------YGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC--SSCC------BSCEEEEETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC--CCcc------cceeEEEECCEEEEEeCCCCC
Confidence 1122222 56777777632 3588999988653322211 1111 1122333566666664 3 2
Q ss_pred ----CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC-----cEEEEEcCCCceEEEeccccccCCCCc
Q 001386 953 ----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTTS 1023 (1088)
Q Consensus 953 ----~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1023 (1088)
+.+.+||..+.+-....... .......+..-+++.++.|+.++ .+.+||..+......-. .+..
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~-- 233 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE-- 233 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC--
T ss_pred CcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc--
Confidence 36899998876532221111 11111112233778888887654 58889998886543211 1211
Q ss_pred cccccceEEEECCCCCCEEEEEeCCC--------------cEEEEeCCCCCCCccccCCCCc
Q 001386 1024 CLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDEI 1071 (1088)
Q Consensus 1024 ~~~~~~~~~~~~p~d~~~l~~~~~dg--------------~v~~w~l~~~~~~~~~~~~~~~ 1071 (1088)
+....++.+ ++.+++.|+.++ .+.+||+. ..+|...+|.++
T Consensus 234 --r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~r 288 (315)
T 4asc_A 234 --RSSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEE--EKKWEGVLREIA 288 (315)
T ss_dssp --CBSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT--TTEEEEEESCSS
T ss_pred --ccceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCC--CChhhhhccCCc
Confidence 111122222 358888888743 35667764 456987655543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.019 Score=55.27 Aligned_cols=185 Identities=8% Similarity=0.002 Sum_probs=97.4
Q ss_pred CCcEEEEEeCCCeEEEEEcCCcee-----eeeeccc--cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001386 851 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 919 (1088)
Q Consensus 851 d~~~lasg~~dg~i~lwd~~~~~~-----~~~l~~h--~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~----~ 919 (1088)
.+.+|+...+| +|+.=...++.. ..+-.++ =..+..++|+|+|.+.+. .+|.+.--+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34567777777 666655554431 1111122 236789999999987666 56754444433211100 0
Q ss_pred eeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeee-----eee-cCCCcCEEEEEEeeCCCEEEEEe
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-----QWF-PISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~-----~~~-~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
..+-. .+.. ....+.|.|+|.+.++ .|+.|+-++-.+..... ... ..--..+..|.|.|+|.+.++.
T Consensus 80 t~IG~-~Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGN-GGWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEEC-SCGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEecc-cccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 01100 0111 1368999999999999 78999888764322111 101 1112567999999999877766
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEE
Q 001386 994 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1052 (1088)
Q Consensus 994 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~ 1052 (1088)
|+.+.-+.-.++.....+.....+. ..+.+++.. +.|.| ++.+.++. +|.++
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g--~~g~~~yr~-l~f~~-~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIG--QGGWDTFKF-LFFSS-VGTLFGVQ--GGKFY 204 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEE--SSSGGGEEE-EEECT-TSCEEEEE--TTEEE
T ss_pred -CCcEEecCCCCCCCcccccccceec--cCCcceEEE-EEECC-CCcEEEEe--CCeEE
Confidence 7775433333222111110000001 012334444 44888 67766655 77443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.016 Score=61.24 Aligned_cols=201 Identities=9% Similarity=0.018 Sum_probs=112.3
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeeccc-cCCeeEEEE--CC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001386 853 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 927 (1088)
Q Consensus 853 ~~lasg~~dg~i~lwd~~~~~~~~~l~~h-~~~V~~l~~--s~-dg~~las~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 927 (1088)
.++++++.||.|+-.|..+|+.+..++.. ..++....- .+ ++..++.. +.||.|..++..+|...-...+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 122222110 01 23333333 589999999988875332111111111
Q ss_pred CccCCCCeEE---EEE------cCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcC------EEEEEEe-----eCCC
Q 001386 928 VMTLAPSETH---IQF------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----CDCR 987 (1088)
Q Consensus 928 ~~~~~~~v~~---~~f------s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~dg~ 987 (1088)
.. ++.. ..+ +.+|..++.+.++++...|+.+|+.+.++..+.... ..|.... ..+.
T Consensus 91 ~S----P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 TS----PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TC----SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred cc----ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 00 1111 001 245555555889999999999999998876543211 1111111 1245
Q ss_pred EEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 001386 988 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1063 (1088)
Q Consensus 988 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~ 1063 (1088)
.|+.+..+..+.+.+ .+|+ +.......+.+....+. +.. ....+. |+.. ++++.||.|..+|.......|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~-~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVP-LAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHH-HHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccc-ccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677788888888777 5564 43333222222221100 000 000112 4454 568899999999998888889
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.98 Score=48.05 Aligned_cols=207 Identities=11% Similarity=0.049 Sum_probs=115.3
Q ss_pred CeEEEEECCCCCEEEEEe------------CCCEEEEEEccCCCc-ccceeEecc-----CCCCEEEEEecC--CCCcEE
Q 001386 398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 457 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~------------~dg~i~vwd~~~~~~-~~~~~~~~~-----h~~~v~~~~~s~--d~~~l~ 457 (1088)
..-.++..|+|..+++++ .+|.|.++|.++... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445567788876665552 689999999984321 2222 2333 234667777765 454213
Q ss_pred EEEEeC--CCcEEEEeCCCCc-e---eEEeccC-CccEEEEeeeeeCCceEEEEEe-----------------cCCeEEE
Q 001386 458 VITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSIS-----------------VDGKIKA 513 (1088)
Q Consensus 458 l~s~s~--d~~i~vwd~~~~~-~---~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~-----------------~dg~i~i 513 (1088)
+++-.. +.+|.+|++..+. . +.++.+. -...+.+.+. ++|.+.++.. ..|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 5678888766532 2 2334432 2346777774 4666666654 1244544
Q ss_pred EECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC-Ccee--EEEeccccccccEEEEEEeC-C
Q 001386 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIK--RTYQGLQLQHNSVSVVHFDT-A 589 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~--~~~~~~~~~~~~v~~~~~~~-~ 589 (1088)
+|. .+... ....-...+.++||||++.|+++.. ....|+.|++.. ++.. +.+. . .+....+++.+ +
T Consensus 208 ~d~--~~~~~-~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YSP--NDVRV-VAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT 277 (355)
T ss_dssp ECT--TCCEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred EEC--CeEEE-eecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence 543 33222 2222234578999999999988763 245688888753 3322 2331 1 25678889998 5
Q ss_pred CCEEEEEeCC-CcEEEEEcC--CCeeeEEEe
Q 001386 590 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 617 (1088)
Q Consensus 590 ~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 617 (1088)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344444443 244444444
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.16 Score=54.42 Aligned_cols=165 Identities=10% Similarity=0.022 Sum_probs=101.0
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceee-----
Q 001386 892 DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL----- 966 (1088)
Q Consensus 892 ~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~----- 966 (1088)
.+|..++.+ .++.||.-++..... -+.+.... +. ....|..+..||+|++||..++..|.|-.+..+...
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~--Yk~L~~~~-~i-~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSL--YHSLNFSR-HL-VLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSS--CEEEECTT-TC-CCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCc--ceEEecCc-cc-ccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccc
Confidence 345555544 346677667664221 11222221 00 001477899999999999999999999998843211
Q ss_pred -------eeeecC-----CCcCEEEEEEee---CCCEEEEEeCCCcEEEEEcCCCceEEE-eccc-cccCCCCccccccc
Q 001386 967 -------KQWFPI-----SSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNLEVQCR-ILST-AYLRPTTSCLHVYP 1029 (1088)
Q Consensus 967 -------~~~~~~-----h~~~v~~l~fs~---dg~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 1029 (1088)
+.+..+ ...+|..+.|-| .|..|++-..|++|++||+........ +... ..+... ....-.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d--~~~~ev 182 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLD--ARVNDI 182 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESC--SSCCCE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCC--cccceE
Confidence 112211 257799999988 567899999999999999997432222 1100 011111 111334
Q ss_pred eEEEECCCCCCEEEEEe--CCCcEEEEeCCCCCCCccc
Q 001386 1030 HAIAAHPLKPTQFAVGL--TNGEVYVIEPNEPGDTWAV 1065 (1088)
Q Consensus 1030 ~~~~~~p~d~~~l~~~~--~dg~v~~w~l~~~~~~~~~ 1065 (1088)
.+++|.+ ++-+|-+.+ ..|.|+-.-+--+. +|+.
T Consensus 183 ~S~~Fg~-~~lTLYvl~~t~~GDIYAlcP~LP~-~~~~ 218 (452)
T 3pbp_A 183 TDLEFSK-DGLTLYCLNTTEGGDIFAFYPFLPS-VLLL 218 (452)
T ss_dssp EEEEECT-TSSCEEEEECTTSCEEEEESSCCCS-EEEC
T ss_pred EEEEEcC-CCcEEEEEecCCCCCEEEECCCCcc-cccc
Confidence 6789998 778787755 78888887775544 4543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.13 Score=54.37 Aligned_cols=233 Identities=10% Similarity=0.067 Sum_probs=122.0
Q ss_pred ecCCCEEEEEe-C----CcEEEEEcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeC----C-----CeEEEEEcC
Q 001386 807 SKNDAYLFSAS-G----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 870 (1088)
Q Consensus 807 s~dg~~l~~~~-d----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~----d-----g~i~lwd~~ 870 (1088)
.-++.+++.|+ + ..+.+||..+.+-... +....... +++.. ++++++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 34666777665 2 4589999887653222 11111111 22222 5678887776 2 368899988
Q ss_pred Ccee--eeeeccccCCeeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 871 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 871 ~~~~--~~~l~~h~~~V~~l~~s~dg~~las~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+. .... .-..+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~----~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRRI----GVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCCB----SCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--cccc----ceEEEEE--C
Confidence 7642 2222222222222333 67777777643 35888998876533322111 1111 1122222 6
Q ss_pred CCEEEEE-eC-----CeEEEEEcCcceeeeeeecCC-CcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceEEE
Q 001386 944 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 944 g~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~~~ 1011 (1088)
+++++.+ .+ +.+.+||..+.+-........ ......+ .-+++.++.|+.+ ..+.+||+.+......
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 22 458999988765332211111 1111222 2377777777765 5689999998865432
Q ss_pred eccccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCccccC
Q 001386 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1067 (1088)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~l~~~~~~~~~~~ 1067 (1088)
- .++.. +. ..+++.. ++.+++.|+.++ .+.+||+.. .+|...+
T Consensus 247 ~----~~p~~----r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 294 (308)
T 1zgk_A 247 A----PMKHR----RS-ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVT 294 (308)
T ss_dssp C----CCSSC----CB-SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEE
T ss_pred C----CCCCC----cc-ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC--CEEeecC
Confidence 1 11111 11 1222222 468888888653 577888754 5687553
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.19 Score=53.30 Aligned_cols=230 Identities=9% Similarity=-0.027 Sum_probs=113.5
Q ss_pred EEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-----C------CcEEEEeCCCCceeE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 479 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-----d------~~i~vwd~~~~~~~~ 479 (1088)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||+.+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 44454 568999998875221 22222222333333445566 5566663 1 127788988765322
Q ss_pred EeccCCccEE--EEeeeeeCCceEEEEEecC--------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 480 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
+..-..+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.......+..-+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 111111111 1111 1 45667777643 34888888765422211111111112222346666666664
Q ss_pred CC--CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeEEEeCCCCC
Q 001386 550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 622 (1088)
Q Consensus 550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 622 (1088)
.. .....+.+||+.+.+-...-.... ......++.+ ++..++.|+.++ .+.+||..+.+....-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 21 112458999998775433221111 1111222222 566667776544 588899988765544322211
Q ss_pred CCCceEEEecCCCEEEEEeCCC--------------cEEEEeCCCCC
Q 001386 623 PENPRICFNKNGTLLAVIANEN--------------RIKILETPESN 655 (1088)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~ 655 (1088)
.....+..-++++++.|+.++ .+.+||..+.+
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 122222333677777777532 36677877653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.17 Score=62.56 Aligned_cols=233 Identities=13% Similarity=0.119 Sum_probs=141.8
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeeccc
Q 001386 803 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 881 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~~~l~~h 881 (1088)
+.-++|..+.+|.-.+.++.|||+++.+.+....-+ ..|.--.|-. .+.|+..+ +..|+-|++.. ..++..+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 456788888888888888999999988777766633 3555556654 34555444 56799999964 3454555545
Q ss_pred ----cCCeeEEEECCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc--C-CCCEE
Q 001386 882 ----SKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH--K-DQTRF 947 (1088)
Q Consensus 882 ----~~~V~~l~~s~dg~~las~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs--~-dg~~l 947 (1088)
...|..-..+++.++++..|- .|.+.+|.++.+ .-+..+||.. ....+.+. + ....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHh---hhheeccCCCCCCceEE
Confidence 456778888999999886553 478899988863 3344556543 11112211 1 12222
Q ss_pred EEEe----CCeEEEEEcCcc---ee------eeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 948 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 948 ~~~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
+.+. .++++|-++... .. ...+++. ...-..++..|+.-..+...+.-|.|.++|+.||.++..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 2232 267888887543 11 1111111 1444556777777777888889999999999999987654
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1013 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
+.. +..+.. .+.+. ...-++.....|.|.--.+.+.
T Consensus 297 ris--------~~~iF~--~~~~~-~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 RIS--------GETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ccc--------CCceEE--eccCC-CCCceEEEcCCceEEEEEEccc
Confidence 411 111221 12232 2233555557777777666543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.068 Score=51.50 Aligned_cols=144 Identities=9% Similarity=0.010 Sum_probs=84.4
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee------eeee--ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEc
Q 001386 840 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 911 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~------~~~l--~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~ 911 (1088)
..++.++|+| ++.+.++ .+|.++-.+..+... -..+ .+... -.++.|.|+|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3667999999 8887777 778777777655221 1111 01112 478999999998887 5687776665
Q ss_pred CCCceeeee--eeecCC-CCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceee-----eee-ecCCCcCEEEEEE
Q 001386 912 DGWGIQTCR--SLQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQW-FPISSVPISQATF 982 (1088)
Q Consensus 912 ~~~~~~~~~--~~~~~~-~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~-----~~~-~~~h~~~v~~l~f 982 (1088)
.+....... -..+.. +-. .+..+.|.|+|.+.++. |+.++-+...++... ... ........+.+.|
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~----~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWS----GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGG----GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CcCCCCceeccccEeccCCCC----ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 332211110 000001 111 47899999999999999 888654443322211 111 1122334455778
Q ss_pred eeCCCEEEEEeCCC
Q 001386 983 SCDCRMVFTSFVDG 996 (1088)
Q Consensus 983 s~dg~~l~s~s~dg 996 (1088)
+++|...++. +|
T Consensus 190 ~~~G~l~~v~--~g 201 (236)
T 1tl2_A 190 SSVGTLFGVQ--GG 201 (236)
T ss_dssp CTTSCEEEEE--TT
T ss_pred CCCCcEEEEe--CC
Confidence 8888776655 66
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.34 Score=52.45 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=115.9
Q ss_pred cCCCEEEEEe--CCcEEEEEcCC----ceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeC-C---------CeEEEEEcC
Q 001386 808 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR 870 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~-d---------g~i~lwd~~ 870 (1088)
-++++++.|+ ...+.+||..+ ++.+..+. .....-.++.+ ++++++.|+. + ..+.+||+.
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 3677777775 45799999863 23332222 11112222333 5678887776 2 478999998
Q ss_pred Ccee--eeeec-cccCCeeEEEECCCCCEEEEEeCC---------------------------------------CcEEE
Q 001386 871 SSEV--ISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV 908 (1088)
Q Consensus 871 ~~~~--~~~l~-~h~~~V~~l~~s~dg~~las~s~D---------------------------------------g~i~i 908 (1088)
+.+- +..+. .....-.++. .++++++.|+.+ ..+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 7642 22222 1111112222 577888888865 46889
Q ss_pred EEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e------CCeEEEEEc--Cccee--eeeeecCCCcCE
Q 001386 909 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTC--LKQWFPISSVPI 977 (1088)
Q Consensus 909 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~------d~~i~vwd~--~~~~~--~~~~~~~h~~~v 977 (1088)
||..+.+-.....+.... .. -.+++. -++++++.+ . ...+..||+ .+.+- +... .......
T Consensus 173 yd~~~~~W~~~~~~p~~~-~~-----~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~ 244 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYG-TA-----GAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVA 244 (357)
T ss_dssp EETTTTEEEEEEECSSCC-CB-----SCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCB
T ss_pred EeCCCCcEEECCCCCCCC-cc-----cccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccc
Confidence 999886533322211111 00 012222 356666663 2 235777876 43332 2111 1111111
Q ss_pred EEEEEeeCCCEEEEEeCC----------------------CcEEEEEcCCCceEEEeccccccCCCCccccccceEEEEC
Q 001386 978 SQATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1035 (1088)
Q Consensus 978 ~~l~fs~dg~~l~s~s~d----------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
...+...+++.++.|+.+ ..+.+||+.+.+....- .++.. +....++.+
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~----r~~~~~~~~- 315 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG----ELSQG----RAYGVSLPW- 315 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE----ECSSC----CBSSEEEEE-
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC----CCCCC----cccceeEEe-
Confidence 222334577777777632 25788999887654321 12221 111222332
Q ss_pred CCCCCEEEEEeCCC------cEEEEeCCCCCCCccccCCCC
Q 001386 1036 PLKPTQFAVGLTNG------EVYVIEPNEPGDTWAVLPPDE 1070 (1088)
Q Consensus 1036 p~d~~~l~~~~~dg------~v~~w~l~~~~~~~~~~~~~~ 1070 (1088)
++.+++.||.++ .|.++++ ...+|....|-+
T Consensus 316 --~~~i~v~GG~~~~~~~~~~v~~l~~--~~~~~~~~~~~~ 352 (357)
T 2uvk_A 316 --NNSLLIIGGETAGGKAVTDSVLITV--KDNKVTVQNLEH 352 (357)
T ss_dssp --TTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEEC---
T ss_pred --CCEEEEEeeeCCCCCEeeeEEEEEE--cCcEeEeeeccc
Confidence 468899999764 3444455 456677666654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.98 E-value=2 Score=45.40 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=59.1
Q ss_pred CeeEEEEecCCCEEEEEe--CCcEEEEEcCCcee------------------EEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001386 800 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~sp~d~~~lasg~ 859 (1088)
....++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.++...-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 345789999888776553 33222322222211 122222223567788874 56666666
Q ss_pred CCCeEEEEEcCCcee----eeeeccccCCeeEEEECCCCCEEEEEe
Q 001386 860 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~las~s 901 (1088)
..+.|....+..... ...+.+..+++..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666777777765432 223445557899999999998777654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.21 Score=52.80 Aligned_cols=234 Identities=7% Similarity=-0.023 Sum_probs=115.4
Q ss_pred CCCCEEEEEeCC----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC----C-----CcEEEEeC
Q 001386 406 PDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWDA 472 (1088)
Q Consensus 406 ~dg~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~----d-----~~i~vwd~ 472 (1088)
-++..++.|+.+ ..+.+||..+++-.. ...+......-..+. .+++ +++.|+. + ..+.+||+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCV--VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE--ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccceEEE--ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356777777632 358899988764221 111111111111222 2444 5555654 2 46888998
Q ss_pred CCCceeE--EeccCCccEEEEeeeeeCCceEEEEEecC-----CeEEEEECCCCCceEEecCCCC--ceEEEEEccCCCE
Q 001386 473 VTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR 543 (1088)
Q Consensus 473 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~ 543 (1088)
.+.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||..+.+-......+.. ....+. -+++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEE
Confidence 8765322 11111111122222 45677776644 3577888776543222111111 112222 26666
Q ss_pred EEEEeeCCCC-ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEEe
Q 001386 544 LFSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 544 l~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~ 617 (1088)
++.++.+... ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 6666654322 3458899988775443221111 1112222222 55666666654 568999998876544322
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 655 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 655 (1088)
.... .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 249 ~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 249 MKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CSSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 2111 11222222367777777643 356778877653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.74 E-value=1.1 Score=47.24 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=109.9
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC----CC------
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----KH------ 418 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~----dg------ 418 (1088)
+++.|+. .+..||..+++-... . +......-...+...+++.++.|+. ++
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~-~-----------------~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLT-A-----------------LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEE-E-----------------ECTTSCSSEEEEECSSSCEEEEESSCC-------CCC
T ss_pred hhhcccc--ceEEECCCCCceecc-c-----------------CCccCCccceEEEEECCEEEEECCcccCccccCCCcc
Confidence 5666663 478888887763320 0 1111111223334457888888873 12
Q ss_pred -EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-------CcEEEEeCCCCceeEEeccCCccEEE
Q 001386 419 -IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-------KTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 419 -~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-------~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
.+.+||..+++-.. ...+.........+.+ +++ +++.|+.+ ..+.+||+.+.+-...- ....+...
T Consensus 78 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~ 151 (318)
T 2woz_A 78 SYFFQLDNVSSEWVG-LPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYG 151 (318)
T ss_dssp BEEEEEETTTTEEEE-CSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEES
T ss_pred ccEEEEeCCCCcEEE-CCCCCccccccceEEE--CCE--EEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccc
Confidence 27778887654211 1111111111122222 444 45555543 35788898876543221 11111111
Q ss_pred EeeeeeCCceEEEEEecC------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC-ceeEEEEeCC
Q 001386 491 LCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWNES 563 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~-~~~i~iwd~~ 563 (1088)
.+.. .-++.+++.|+.+ ..+.+||+.+..-...-..+.......+..-+++.++.++.+..+ ...+.+||+.
T Consensus 152 ~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 152 HNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp CEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETT
T ss_pred cEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECC
Confidence 0111 1255666776642 348888887654322211111111111122366777777654321 2457889988
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC--------------CcEEEEEcCCCeeeEE
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------------HVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------------g~i~iwd~~~~~~~~~ 615 (1088)
+.+-...-.... .......+. .++..++.|+.+ ..+.+||..+.+....
T Consensus 231 ~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 231 TNKWEVMTEFPQ-ERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp TCCEEECCCCSS-CCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCeEEECCCCCC-cccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 776443221111 111112222 245566666543 3466777766655443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.78 Score=48.51 Aligned_cols=224 Identities=10% Similarity=0.005 Sum_probs=107.8
Q ss_pred EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC----CC-------cEEEEeCCCCceeEE--eccCC
Q 001386 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 485 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~----d~-------~i~vwd~~~~~~~~~--~~~~~ 485 (1088)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988775322 12221112222333345565 5666662 11 177888877654321 11111
Q ss_pred ccEEEEeeeeeCCceEEEEEecC-------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC--Ccee
Q 001386 486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 556 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~--~~~~ 556 (1088)
..-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111211 45677777764 24777887665433221112111111222256666676664221 1345
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+.+||+.+.+-...-.... ......++. -++..++.|+.+ ..+.+||..+.+....-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543322111 111122222 255666666643 3477899887664433221111 11222233
Q ss_pred cCCCEEEEEeCC--------------CcEEEEeCCCCC
Q 001386 632 KNGTLLAVIANE--------------NRIKILETPESN 655 (1088)
Q Consensus 632 ~~~~~l~~~~~d--------------g~i~iwd~~~~~ 655 (1088)
-++++++.|+.+ ..+.+||..+.+
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 466777777653 346677776653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.48 Score=58.82 Aligned_cols=236 Identities=11% Similarity=0.101 Sum_probs=135.3
Q ss_pred eecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEE
Q 001386 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1088)
Q Consensus 341 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i 420 (1088)
-.+|..+ ++|.=. ..++.|+|+++.+.+..+. -..+|..=.|-.+ +.|+..+ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~-~~l~lVT-~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCC-CeeEEEc-CCeE
Confidence 3466666 566543 5889999999988776533 1245666677644 4455443 4459
Q ss_pred EEEEccCCCcccceeEeccC----CCCEEEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeccCCccEEE
Q 001386 421 QLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 421 ~vwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
.-|++.+.... ...+..| ...|..-.-+++.+++ +++|= -.|.+.+|..+.+. .+.+.||.+....
T Consensus 128 yHW~~~~~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 128 YHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ 203 (1630)
T ss_pred EEeccCCCCcc--HHHHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhhe
Confidence 99999753321 1123334 3467777888999863 33332 35778889866543 3456677665554
Q ss_pred EeeeeeCCceEEEE-Eec---CCeEEEEECCCC---CceE-----E--ecC--CCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 491 LCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----D--YDA--PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s-~~~---dg~i~iwd~~~~---~~~~-----~--~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+.+...+....+++ +.. .+.+++-++... .... . +.. ...-..++..|+.-..+...+. .
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~ 279 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence 44432222222333 222 268888888543 1111 0 111 1122345666776666666653 6
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
|.+.++|+.||.++..-+-.. ..|...+......-+++....|.|.--.+....
T Consensus 280 G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 779999999998876555333 455555554444455555566665555554433
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.96 Score=50.41 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC--ccCCCCeEEEEEcCC---CCEEEE--Ee----
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--MTLAPSETHIQFHKD---QTRFLL--VH---- 951 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~fs~d---g~~l~~--~~---- 951 (1088)
.....|+|.|||+++++-...+.|++++..++..... ....... .........++|+|| +.+|.+ +.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~--~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTV--FQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEE--ecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3467999999999888654445688887655443221 1111111 011245789999995 554444 22
Q ss_pred --------CCeEEEEEcCcc-------eeeee-eecCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 952 --------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 952 --------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
...|.-|+...+ +.+.. +..........++|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134666655322 12221 11122345789999999987776553
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.011 Score=46.63 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh--HHHHHHHhcCccHHHHHHhhcc
Q 001386 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS 59 (1088)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1088)
++|+.+-|++||..+||.+++.+|.+|.+++.+ ...=....|+=+|..++.+-.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 578999999999999999999999999998864 2223456667777777666443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.44 E-value=4.2 Score=45.13 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=78.8
Q ss_pred CCeeEEEEecCCCEEEEEe--CCcEEEEEcCCcee-------------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001386 799 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 863 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 863 (1088)
...-.+.++|||++++++. +.++.++|+..... ..... ..-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3445688999999999987 78899999874211 11222 334567899999 7877777779999
Q ss_pred EEEEEcCCc----------eeeeeeccccCCeeEEEE------CCCCCEEEEEe---CCCc----------EEEEEcCCC
Q 001386 864 ILIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGW 914 (1088)
Q Consensus 864 i~lwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~las~s---~Dg~----------i~iwd~~~~ 914 (1088)
|.-|++... ..+.++.-|-. +-.+.- .|||++|++.. .|+. -.+.|++..
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 999999764 45566655543 223333 58999999874 4554 367777664
Q ss_pred c
Q 001386 915 G 915 (1088)
Q Consensus 915 ~ 915 (1088)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.14 E-value=1.7 Score=46.68 Aligned_cols=192 Identities=6% Similarity=-0.029 Sum_probs=94.6
Q ss_pred CCCEEEEEeC-----------CcEEEEEcCCceeE--EEec-CCCCCeEEEEEcCCCCcEEEEEeCC-------------
Q 001386 809 NDAYLFSASG-----------GVISLYIVMTFKTI--LTIM-PPSPTATSLAFNPHDNNVIAIGMDD------------- 861 (1088)
Q Consensus 809 dg~~l~~~~d-----------g~i~iwd~~~~~~~--~~~~-~~~~~i~~l~~sp~d~~~lasg~~d------------- 861 (1088)
++++++.|+. ..+.+||..+.+=. ..+. .......++. . ++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~ 141 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVNQNIFNGYFEDLNE 141 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcCCCcCcccccchhh
Confidence 6666666542 35889998775422 2222 1111222233 3 67888888865
Q ss_pred --------------------------CeEEEEEcCCce--eeeeeccccCCeeEEEECCCCCEEEEEeCC------CcEE
Q 001386 862 --------------------------STILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIF 907 (1088)
Q Consensus 862 --------------------------g~i~lwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~las~s~D------g~i~ 907 (1088)
..+.+||..+.+ .+..+......-.+++.. ++++++.|+.+ ..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 142 AGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp HTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEE
T ss_pred cCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceE
Confidence 479999998754 333333111110122222 56677776642 3477
Q ss_pred EEEc--CCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe-C----------------------CeEEEEEcCc
Q 001386 908 VWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E----------------------THLAIYEAEE 962 (1088)
Q Consensus 908 iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~-d----------------------~~i~vwd~~~ 962 (1088)
++|+ .+.. ...+....... ....+.+...++++++.+. + ..+.+||..+
T Consensus 221 ~~d~d~~~~~---W~~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~ 294 (357)
T 2uvk_A 221 ELDFTGNNLK---WNKLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN 294 (357)
T ss_dssp EEECC---CE---EEECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-
T ss_pred EEEecCCCCc---EEecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC
Confidence 7877 4333 22222111100 0112233445667666642 1 2477899886
Q ss_pred cee--eeeeecCCCcCEEEEEEeeCCCEEEEEeCCC------cEEEEEcCCCceEEEec
Q 001386 963 LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDG------TLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 963 ~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg------~v~vwd~~~~~~~~~~~ 1013 (1088)
.+- +........ . ..+...+++.++.|+.++ .|.++++++++......
T Consensus 295 ~~W~~~~~~p~~r~-~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 295 GKWDKSGELSQGRA-Y--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp --CEEEEECSSCCB-S--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CceeeCCCCCCCcc-c--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 542 222221111 1 223445788888888653 35566888888765443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.71 E-value=1.7 Score=48.19 Aligned_cols=195 Identities=12% Similarity=0.124 Sum_probs=116.4
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCceeEEEecCCC-CCeEEEEEc--CCCCcEEEEEeC-------CCeE---------EE
Q 001386 808 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI 866 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s--p~d~~~lasg~~-------dg~i---------~l 866 (1088)
.||++|..-. +..|...++...++-..+.-+. ..+..++|- | +..|++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3889999887 5779999999888776665443 578888886 6 6667777664 2221 11
Q ss_pred ---EEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceeeee-
Q 001386 867 ---YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQTCR- 920 (1088)
Q Consensus 867 ---wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg---------------~i~iwd~~~-------~~~~~~~- 920 (1088)
.|..+.+....+.- .+....+...++|++.++.+.+. -+.++++.. |+.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 12222222211111 12333455678888888776432 256666432 1111100
Q ss_pred -eeecCCCCc------------cCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCccee-------------eeeeecC
Q 001386 921 -SLQTPDGVM------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 972 (1088)
Q Consensus 921 -~~~~~~~~~------------~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~~-------------~~~~~~~ 972 (1088)
-+...++.. ......-.+.++|||++++++ -+.++.|+|++.... ..+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 111234568999999999996 467899999884321 11111
Q ss_pred CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 973 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 973 h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
-.-.....+|.++|....|..-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2567788999999955556668999999999875
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=3 Score=49.48 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=106.4
Q ss_pred cCCCEEEEEe-C----CcEEEEEcCCceeEEEe--------cCCCCCeEEEEEcCCCCcEEEEEeCCC------eEEEEE
Q 001386 808 KNDAYLFSAS-G----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 868 (1088)
Q Consensus 808 ~dg~~l~~~~-d----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~sp~d~~~lasg~~dg------~i~lwd 868 (1088)
.++.+++.|+ + ..+.+||..+++-...- ......-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777775 2 35889998765432222 11112234444543 467888887543 688999
Q ss_pred cCCce--eeeeeccccCCeeEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-cCCCCccCCCCeEEEEEcCC
Q 001386 869 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 869 ~~~~~--~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~fs~d 943 (1088)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+..-....... .+.... .-..+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence 98753 333332211211 223324788888888654 6899999886532221100 111111 1234566665
Q ss_pred -CCEEEEE-e--C-----CeEEEEEcCccee-----eeeeec--CCCcCEEEEEEeeCCCEEEEEeCC--------CcEE
Q 001386 944 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 999 (1088)
Q Consensus 944 -g~~l~~~-~--d-----~~i~vwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~s~s~d--------g~v~ 999 (1088)
++.++.| . + +.+.+||..+..- -..... .....-.+++...+++.++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5666664 2 2 3588999887761 111111 111111123333447777878743 4699
Q ss_pred EEEcCCCceE
Q 001386 1000 IHEASNLEVQ 1009 (1088)
Q Consensus 1000 vwd~~~~~~~ 1009 (1088)
+||..+....
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999998765
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.17 Score=53.48 Aligned_cols=193 Identities=10% Similarity=0.047 Sum_probs=102.2
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccC-CccEEEEe-eeeeCCceEEEEE-ecCCeEEEEECCCCCceEEecCC----C
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLC-PHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 529 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 529 (1088)
.++.++.||.|.-.|..+|+.+.++... ..++.... .....++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788999999999999999999988654 12222211 1001133334333 68999999988766444332211 1
Q ss_pred CceEE---EEE-----ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccccc-----EEEEEEe-----CCCC
Q 001386 530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 591 (1088)
Q Consensus 530 ~~v~~---~~~-----s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~ 591 (1088)
.++.. ..+ +..+..+++++. ++.++-.|..+|+.+..+...... .. ..|.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKN-GYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBC-C--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCc-ccccccccccccccccccccCCC
Confidence 11110 000 014456666654 667999999999999888653210 10 0111110 1235
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEEeCC--CCCCCCc-----eEEEecCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001386 592 QILAAGDDHVIKIWDMNKVQLLTTIDAG--GGLPENP-----RICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~-----~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
.++.+..+..+.+.+ .+|+ +..+... ... .+. .-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~-~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN-VLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECC-TTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEeccccccc-ccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677776666666655 3343 2111100 000 000 0011234555 457888999999988776543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.81 E-value=7.2 Score=40.44 Aligned_cols=168 Identities=7% Similarity=0.032 Sum_probs=94.2
Q ss_pred cCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC--------------CeEEEEE
Q 001386 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--------------GKIKAWL 515 (1088)
Q Consensus 450 s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iwd 515 (1088)
+.++..+++.....++.|...+.+.. ....+... .+..+ ..++.+|+-.... ..|+..+
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~~--~~~~i----~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSND--TAMYI----NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEEE--EEEEE----EECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccCC--ceeeE----EEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34666533333334556666664433 33333321 12222 2244555555432 3577777
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
++..+........ ...|++++++|+....+.++...|+..++.... .+.+..+. + ..++++++.|+-
T Consensus 95 ~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~-----~--~~~~~~g~~iy~ 161 (302)
T 3s25_A 95 RNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY-----L--FTCNTSDRYFYY 161 (302)
T ss_dssp TTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC-----C--CCSEEETTEEEE
T ss_pred CCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC-----c--eEeeEECCEEEE
Confidence 7766544333221 236888999999876333456778888887544 34444433 1 346778888887
Q ss_pred EeC-CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 596 AGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 596 ~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
.+. ...|.+-++..+.....+. +. ....+.|++.+|+-....
T Consensus 162 t~~g~~~Iy~~~l~g~~~~~l~~--~~----~~~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 162 NNPKNGQLYRYDTASQSEALFYD--CN----CYKPVVLDDTNVYYMDVN 204 (302)
T ss_dssp ECTTTCCEEEEETTTTEEEEEEC--SC----EEEEEEEETTEEEEEEGG
T ss_pred EeCCCceEEEEECCCCCEEEEeC--CC----ccceeeecCCEEEEEEcC
Confidence 665 6778888887765444332 11 223466888888766543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.44 E-value=8.3 Score=39.97 Aligned_cols=182 Identities=10% Similarity=0.054 Sum_probs=100.1
Q ss_pred eeeecCCCCeEEEEEccc-------------CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+--++++|.++..+...+ ..|+..++..++... +.. .. +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 345688999766665543 356666666654322 111 11 23678
Q ss_pred CCCCEEEEEe--C--CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 406 PDGSLLGVAY--S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 406 ~dg~~las~~--~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+++++|+... . +..|..-++.+.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 2 3356666666433 22 3444432 467888985 2334334678888887766544333
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.+ ... ..++| ++.+|+-....+ .|..-+++...... +.. ..+ ..|+|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 23433 344555554432 45555565544332 221 223 34888999998764322 356777
Q ss_pred EeCCCCc
Q 001386 560 WNESEGA 566 (1088)
Q Consensus 560 wd~~~~~ 566 (1088)
.++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7765443
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.11 Score=46.44 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=56.3
Q ss_pred ccchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccccCC------ChHHH
Q 001386 68 YSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSAR 141 (1088)
Q Consensus 68 ~~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~R 141 (1088)
+.+ ++|.|+-|.||||+.+|..++|..|+.+.-..+... .+..++|+.+.....+.+++....+... .+.+-
T Consensus 30 L~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~ 107 (138)
T 2j4b_A 30 LLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAF 107 (138)
T ss_dssp HGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHH
Confidence 344 899999999999999999999999999866666655 7778888887777666655543333222 13444
Q ss_pred HHHHHHHHh
Q 001386 142 KNMMLELKQ 150 (1088)
Q Consensus 142 ~~l~~~l~~ 150 (1088)
..|+.-|++
T Consensus 108 ~lL~~fL~~ 116 (138)
T 2j4b_A 108 DLLINFLEE 116 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555553
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.57 E-value=14 Score=40.15 Aligned_cols=260 Identities=12% Similarity=0.066 Sum_probs=122.0
Q ss_pred CCCeeEEEEec--CCCEEEEEeCC----cEEEEEcCCceeEEEecC--------------CCCCeEEEEEcCCC-CcEEE
Q 001386 798 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIMP--------------PSPTATSLAFNPHD-NNVIA 856 (1088)
Q Consensus 798 ~~~v~~~~~s~--dg~~l~~~~dg----~i~iwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~d-~~~la 856 (1088)
...|.++++.| ++.+.+.+..| .|... ...++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 66666666554 33322 222322222211 11257789998743 44556
Q ss_pred EEeCCCeEEEEEcC--Cceeeeeecc----------------ccCCeeEEEECCC-CCEEEEEeCCCcEEEEEcCCCcee
Q 001386 857 IGMDDSTILIYNAR--SSEVISKLEG----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQ 917 (1088)
Q Consensus 857 sg~~dg~i~lwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-g~~las~s~Dg~i~iwd~~~~~~~ 917 (1088)
++...+.|...+=. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~-- 209 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT-- 209 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS--
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC--
Confidence 66666666554321 1222221111 1235788999873 34444444444333322 2221
Q ss_pred eeeeeec-CCC-Cc-----cCCCCeEEEEEcCC-CCEEEEEeCCeEEEEEcCcceeeeeeecCC-C---cCEEEEEEee-
Q 001386 918 TCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC- 984 (1088)
Q Consensus 918 ~~~~~~~-~~~-~~-----~~~~~v~~~~fs~d-g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~l~fs~- 984 (1088)
....+.. ... .. .....+.++++.|+ ...|.++..+.|...+- .++....+...- . ..+..+++.|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 1111111 000 00 00124789999986 35566665666655542 233222221111 1 3456788876
Q ss_pred CCCEEEEEeC-----------CCcEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEE
Q 001386 985 DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1052 (1088)
Q Consensus 985 dg~~l~s~s~-----------dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~ 1052 (1088)
+...|.++.. ++...+|.... |+.-..+. ..++....-..+...+++++|.++..|.+++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 3344444432 33345665554 33322222 111211000111223577888555667777666654
Q ss_pred EEeCCCCCCCcccc
Q 001386 1053 VIEPNEPGDTWAVL 1066 (1088)
Q Consensus 1053 ~w~l~~~~~~~~~~ 1066 (1088)
|.-.+.+..|...
T Consensus 366 -~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 366 -WASADEGEHWQCI 378 (394)
T ss_dssp -EEESSTTSBCEEE
T ss_pred -EEECCCCCCceEc
Confidence 4555677788744
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=92.00 E-value=0.18 Score=46.17 Aligned_cols=62 Identities=11% Similarity=0.218 Sum_probs=49.1
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccc
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKY 133 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 133 (1088)
++|.|+-|.||||+..|..++|..|+++.-..+.....+..++|+.+....+..+++....+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~f 113 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF 113 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHH
Confidence 89999999999999999999999999986555554456778888887777666665544443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=91.50 E-value=20 Score=39.71 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.8
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEec---------cCCCCEEEEEecCC
Q 001386 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 452 (1088)
Q Consensus 397 ~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d 452 (1088)
.....|+|.|||. .|.++...|.|++++.........+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999996 55556788999999754321111111111 11456889999997
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.61 E-value=24 Score=39.06 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCeeEEEEecCCC--EEEEEeCCcEEEEEcCCce---eEEEec---C------CCCCeEEEEEcCC---CCcEEEEEeCC
Q 001386 799 EAVPCFALSKNDA--YLFSASGGVISLYIVMTFK---TILTIM---P------PSPTATSLAFNPH---DNNVIAIGMDD 861 (1088)
Q Consensus 799 ~~v~~~~~s~dg~--~l~~~~dg~i~iwd~~~~~---~~~~~~---~------~~~~i~~l~~sp~---d~~~lasg~~d 861 (1088)
.....|+|.|||. ++++-..|.|++++..... .+..+. . .......|+|+|+ ++.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999995 7777668999999754221 222221 1 1356789999993 24444443321
Q ss_pred ------------CeEEEEEcCC----------ceeeeeec--cccCCeeEEEECCCCCEEEEEeCCC
Q 001386 862 ------------STILIYNARS----------SEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA 904 (1088)
Q Consensus 862 ------------g~i~lwd~~~----------~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~Dg 904 (1088)
..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1444465532 12333332 1122357899999998888776543
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=11 Score=40.10 Aligned_cols=171 Identities=13% Similarity=0.175 Sum_probs=94.9
Q ss_pred cEEEEEcCCc--eeEEEecCC------CCCeEEEEEc---CC---CCcEEEEEe-CCCeEEEEEcCCceeeeeec-----
Q 001386 820 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 879 (1088)
Q Consensus 820 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~---d~~~lasg~-~dg~i~lwd~~~~~~~~~l~----- 879 (1088)
+|.+||+.+. +.++++.-+ ......+++. |. ++.++.... ..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 777765432 3456778777 21 134444444 46789999999886544331
Q ss_pred ---------cc----cCCeeEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCccCCCCeEEEE
Q 001386 880 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 880 ---------~h----~~~V~~l~~s~d----g~~las~s~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~ 939 (1088)
|. ...|..|++||+ ++.|....-.+ -++|.+.+.-.... ..++.. |.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 236888999998 78888776555 36676654211110 001111 0000001233566
Q ss_pred Ec-CCCCEEEE-EeCCeEEEEEcCc-c---eeeeeeec-CCCcCEEEEEEeeCCCEEEEE
Q 001386 940 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFP-ISSVPISQATFSCDCRMVFTS 992 (1088)
Q Consensus 940 fs-~dg~~l~~-~~d~~i~vwd~~~-~---~~~~~~~~-~h~~~v~~l~fs~dg~~l~s~ 992 (1088)
+. .+|.++++ ...+.|..|+..+ . +....+.. ..-..+..+.+..+|.+.+..
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 75 67776666 4668899999875 1 11122111 123346667766666555544
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=15 Score=39.21 Aligned_cols=171 Identities=11% Similarity=0.076 Sum_probs=92.9
Q ss_pred cEEEEeCCCC--ceeEEeccC------CccEEEEeee-eeC-----CceEEEEEecCCeEEEEECCCCCceEEec----C
Q 001386 466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE-----NIHFIFSISVDGKIKAWLYDSLGARVDYD----A 527 (1088)
Q Consensus 466 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~~-~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~ 527 (1088)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++...++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888888 877766432 3457778776 211 33334444567789999998876544331 1
Q ss_pred C--------------CCceEEEEEccC----CCEEEEEeeCCCCceeEEEEe---CCCC---ceeEEEeccccccccEEE
Q 001386 528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEG---AIKRTYQGLQLQHNSVSV 583 (1088)
Q Consensus 528 ~--------------~~~v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd---~~~~---~~~~~~~~~~~~~~~v~~ 583 (1088)
. ...+..++++|+ ++.|+.....+. .++-.. ++.. ..++. .+.......-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEE-eeecCCCCCcce
Confidence 1 136788999998 788887765332 122221 1111 11221 121200123344
Q ss_pred EEEe-CCCCEEEEEeCCCcEEEEEcCC-C---eeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 584 VHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 584 ~~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
+++. .+|..+++--....|..|+..+ . +....+...........+.+.++|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5665 5676677777888999999875 1 222333322233334455555555444433
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.89 E-value=19 Score=36.79 Aligned_cols=183 Identities=10% Similarity=-0.003 Sum_probs=98.3
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
.|..++...+-.. +. .+|.|..|-....-.+.....-...|..++... ...+.-. ||.|+.|-......+....
T Consensus 64 ~i~~ia~G~~hs~-~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSL-AL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEE-EE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEE-EE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 5666666544333 33 488888887654322111111134688888764 3444445 9999999765532222222
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 959 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd 959 (1088)
.....|..++...+.. ++ .. ||.|..|-........ .+... ...|..++...+...++ .|+.|+.|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-----~p~~~---~~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-----VPAEA---QSGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-----CCGGG---GSSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-----Cceec---CCCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 2335677777654432 23 34 7999999876522111 11100 12467776665555444 699999997
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
....-.+.... .....|..++...+- .++ -. ||.|..|-...
T Consensus 205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h-~~a-l~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPT-EALSGVSAIASGEWY-SLA-LK-NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCG-GGGSSCCEEEECSSC-EEE-EE-TTEEEEESTTC
T ss_pred CCCCCCCCCCc-ccCCCceEEEcCCCE-EEE-EE-CCEEEEecCCC
Confidence 65433332211 113456666644332 233 33 99999996554
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=89.81 E-value=37 Score=39.99 Aligned_cols=244 Identities=8% Similarity=0.001 Sum_probs=123.4
Q ss_pred eeee-ecCCCCeEEEEEccc----CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC-----CCeEEEEECCC
Q 001386 338 MSMD-FHPVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPD 407 (1088)
Q Consensus 338 ~~v~-~spdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-----~~V~~l~~s~d 407 (1088)
..+. ++||+++++++-|.. .+++++|+.+++.+.. .|. . .... .....++|..+
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~--------------~~k~~~~~~~~~~~~~W~d~ 195 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-P--------------ITNSGKLLEGKFTYPTWINK 195 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-C--------------BCTTCCBCCEETCCEEEEET
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-c--------------ccccccccccccceeeEECC
Confidence 3444 899999766655544 3699999999986632 000 0 0000 01133466533
Q ss_pred CCEEEEE----------eCCCEEEEEEccCCCcccceeEeccCCCCE-EEEEecCCCCcE---EEEEEeCC---CcEEEE
Q 001386 408 GSLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQI---SVITCGDD---KTIKVW 470 (1088)
Q Consensus 408 g~~las~----------~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l---~l~s~s~d---~~i~vw 470 (1088)
+..+++. +....|+.|.+.+...-. ...+.+....+ .....+++++.. .+++.+.+ ..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 274 (711)
T 4hvt_A 196 DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYIL 274 (711)
T ss_dssp TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEE
T ss_pred CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEE
Confidence 3333321 122468888887653221 11343333332 345567777741 35554422 345666
Q ss_pred eCCC--CceeEEeccCCccEEEEeeeeeCCceEEEEE----------ecCCeEEEEECCCC-------CceEE-e-cCCC
Q 001386 471 DAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPG 529 (1088)
Q Consensus 471 d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~-------~~~~~-~-~~~~ 529 (1088)
|... ++ +..+....... +.. ..++.+++.. ...+.|...|+... ..... + ....
T Consensus 275 ~~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (711)
T 4hvt_A 275 DTKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN 349 (711)
T ss_dssp ECSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT
T ss_pred cCCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC
Confidence 6553 33 22332222111 111 1234444422 24677888888763 12222 2 2233
Q ss_pred CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEE-EeccccccccEEEEEEeCCCCEEEE-Ee---CCCcEE
Q 001386 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIK 603 (1088)
Q Consensus 530 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~s---~dg~i~ 603 (1088)
..+..+.+..+ ..+++... ++...+.++++.++. .... +.... .+.+......+++..++. .+ .-+.+.
T Consensus 350 ~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~ 424 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIY 424 (711)
T ss_dssp EEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEE
T ss_pred CeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEE
Confidence 46777888766 34444433 456678999987774 2233 32221 135666666677655443 33 346788
Q ss_pred EEEcC
Q 001386 604 IWDMN 608 (1088)
Q Consensus 604 iwd~~ 608 (1088)
.+|+.
T Consensus 425 ~~d~~ 429 (711)
T 4hvt_A 425 LWVKT 429 (711)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 88876
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=89.71 E-value=0.091 Score=47.39 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=49.3
Q ss_pred cccchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccccCC------ChHH
Q 001386 67 RYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSA 140 (1088)
Q Consensus 67 ~~~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~ 140 (1088)
.+.+ ++|.|+-|.||||+..| .++|..|+.+.-..+.....+.+++|+.+....++.+++....+... .+.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 3444 99999999999999999 99999999885444432223444555555444455444433332222 2344
Q ss_pred HHHHHHHHH
Q 001386 141 RKNMMLELK 149 (1088)
Q Consensus 141 R~~l~~~l~ 149 (1088)
-..|+.-|+
T Consensus 109 ~~lL~~fL~ 117 (148)
T 2j49_A 109 LNLLLYFLN 117 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555555
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.17 E-value=21 Score=36.39 Aligned_cols=222 Identities=13% Similarity=0.095 Sum_probs=107.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|..++....- .++. . ||.|..|-......+... ......|..++...+- .+|. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~p-------------------~~~~~~i~~ia~G~~h-s~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTMP-------------------AATQSGVDAIAAGNYH-SLAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSCC-------------------GGGGSCCCEEEECSSE-EEEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCCC-------------------ccCCCCEEEEEeCCCE-EEEE-E
Confidence 46666654432 3444 3 788888876654433210 0012357777765433 3333 4
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
||.|..|-......+.... .-...|..++...+. .+.-. ||.|..|-......+-.-......|..++.
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~-- 148 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG-- 148 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE--
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEc--
Confidence 8999999876543332111 113468777766543 23334 899999975432222111112345666654
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
. ....++ -. ||.|..|-................|..++...+...++ . ++.++.|-......+.. ...
T Consensus 149 G-~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~- 216 (282)
T 3qhy_B 149 G-VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE- 216 (282)
T ss_dssp C-SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG-
T ss_pred c-cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc-
Confidence 1 222333 33 79999996654332211111123455555433332222 2 34477775443211110 000
Q ss_pred cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001386 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1088)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1088)
....|..++.... +.++.. ||.|+.|=...
T Consensus 217 -~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 0134555554433 223333 88888886544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=15 Score=43.51 Aligned_cols=199 Identities=13% Similarity=0.054 Sum_probs=101.5
Q ss_pred CCCCcEEEEEEeCC----CcEEEEeCCCCceeEEe-c-----cCCcc-EEEEeeeeeC-CceEEEEEecCC------eEE
Q 001386 451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAP-VYSLCPHAKE-NIHFIFSISVDG------KIK 512 (1088)
Q Consensus 451 ~d~~~l~l~s~s~d----~~i~vwd~~~~~~~~~~-~-----~~~~~-v~~~~~~~~~-~~~~l~s~~~dg------~i~ 512 (1088)
.++. +++.||.+ ..+.+||+.+++-...- . ..... -.+++. -. ++.+++.|+.++ .+.
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~--~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT--ISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEE--ETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEE--EccCCEEEEEcCCCCCCCccccEE
Confidence 3455 56666643 45888898877643322 1 01111 011111 22 556777776543 477
Q ss_pred EEECCCCCceEEecCCCCc-eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec--cccccccEEEEEEeCC
Q 001386 513 AWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~ 589 (1088)
+||..+..-...-..+... -.+++...+++.++.|+.+..+ .+.+||..+.+-...-.. .........++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 7887764322211111111 1223333478888888765543 699999988765433210 1101122233555655
Q ss_pred -CCEEEEEeC--C-----CcEEEEEcCCCee-----eEEEeCCCCCCC-CceEEEecCCCEEEEEeCC--------CcEE
Q 001386 590 -KDQILAAGD--D-----HVIKIWDMNKVQL-----LTTIDAGGGLPE-NPRICFNKNGTLLAVIANE--------NRIK 647 (1088)
Q Consensus 590 -~~~l~~~s~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~d--------g~i~ 647 (1088)
+..++.|+. + ..+.+||+.+... ...+........ -.+++...++++++.|+.+ ..+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 556666654 2 4588999988772 222211100111 1233444447777777742 4578
Q ss_pred EEeCCCCC
Q 001386 648 ILETPESN 655 (1088)
Q Consensus 648 iwd~~~~~ 655 (1088)
+||..+..
T Consensus 630 ~yd~~t~~ 637 (695)
T 2zwa_A 630 SLDPLSET 637 (695)
T ss_dssp EEETTTTE
T ss_pred EEECCCCe
Confidence 88887653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.44 E-value=44 Score=36.02 Aligned_cols=205 Identities=9% Similarity=0.068 Sum_probs=94.0
Q ss_pred CcEEEEEeCCCeEEEEEcCC-c---eeeeeeccccCCeeEEEECC--CCCEEEEEeCCC--cEEEEEc-CCCceeeeeee
Q 001386 852 NNVIAIGMDDSTILIYNARS-S---EVISKLEGHSKRVTGLVFSD--ALNILVSSGGDA--QIFVWDV-DGWGIQTCRSL 922 (1088)
Q Consensus 852 ~~~lasg~~dg~i~lwd~~~-~---~~~~~l~~h~~~V~~l~~s~--dg~~las~s~Dg--~i~iwd~-~~~~~~~~~~~ 922 (1088)
...|.+|+..| +.+++... + +..... .....|.+|++.| ++.+.+.+ ..| .-.||.. +.++. ...+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~t--W~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGN--WTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSC--CEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCC--ceEC
Confidence 34677788777 55555432 2 222111 1234699999998 55555544 333 0123333 22221 1111
Q ss_pred ecC---CCCcc-----CCCCeEEEEEcC---CCCEEEEEeCCeEEEEEcCcceeeeeeec------------------CC
Q 001386 923 QTP---DGVMT-----LAPSETHIQFHK---DQTRFLLVHETHLAIYEAEELTCLKQWFP------------------IS 973 (1088)
Q Consensus 923 ~~~---~~~~~-----~~~~v~~~~fs~---dg~~l~~~~d~~i~vwd~~~~~~~~~~~~------------------~h 973 (1088)
... ..... ....|.++++.| .+...+.+..+.|...+- .|+.-..... ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCC
Confidence 111 00000 012477899987 455555556666554432 2222211110 11
Q ss_pred CcCEEEEEEeeC-CCEEEEEeCCCcEEEEEcCCCceEEEeccc---cccCCCCccccccceEEEECCCCCCEEEEEeCCC
Q 001386 974 SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILST---AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1049 (1088)
Q Consensus 974 ~~~v~~l~fs~d-g~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg 1049 (1088)
...+.++.+.|. ...|..+..++.|... .+.|+.-..+... .+++...........+++++|.++..+.++...|
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s-~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFES-TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEE-SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEE-CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 235788999873 3445555545544332 2333322222110 1111110000112456888886567777776554
Q ss_pred cEEEEeCCCCCCCcccc
Q 001386 1050 EVYVIEPNEPGDTWAVL 1066 (1088)
Q Consensus 1050 ~v~~w~l~~~~~~~~~~ 1066 (1088)
+|...+.+.+|...
T Consensus 255 ---l~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 255 ---IYRMDRREGVWKRI 268 (394)
T ss_dssp ---EEEEETTTTEEECG
T ss_pred ---EEEeCCCCCcceEC
Confidence 44445566777644
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.39 E-value=5.5 Score=49.00 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=34.5
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 975 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 975 ~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
..+.+++..+|..++++-+.|+++|+|++.++.++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567778888899999999999999999999999887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1088 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.003 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.0 bits (193), Expect = 3e-16
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 435
K+WD+ +N + + P+G+ +L+ +
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495
+ G + ++FS + + + DD VWDA+ R GH V L
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 496 KENIHFIFSISVDGKIKAW 514
+ + S D +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 516
++ D + K+WD G +F GH + + ++C N + S D +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
D +D G T +++S +GR L + W+ + G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
N VS + + D +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 798 QEAVPCFALSKNDAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 854
+ + N + S + + TS++F+ +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284
Query: 855 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910
+ G DD +++A ++ L GH RV+ L +D + + D+ + +W+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)
Query: 847 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 906
D + G D++ +++ R GH + + F N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 907 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 965
++D+ S +T + F K L ++ + +++A +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 966 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1000
+S + D V T D L I
Sbjct: 305 AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + W D LL A + ++ + + I V A++ ++
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ +I G+ S E G Y + + I + S D W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ + ++ + + R S ++ W+ EG ++T+ G
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637
+ ++ + F + DD +++D+ Q L T + + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
++ + + +++ + + L V G + + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 2e-09
Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
QT S ++ F P + TG D
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
T + + V +S G LL Y ++ + + H V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318
Query: 448 AFSAPCKQISVITCGDDKTIKVWD 471
+ + T D +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 3e-09
Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
R + + H+ + + + + + ++ D + +WD+ T ++ ++ + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
+ +++ +D + + V G T TS
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ + E+ V + ++ D K+WD+ +
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
T ICF NG A +++ ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 8e-06
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)
Query: 821 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 878
L+ V T ++ F P + N A G DD+T + A +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 879 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 938
+ +T + FS + +L++ D VWD L D + + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318
Query: 939 QFHKDQTRFL 948
D
Sbjct: 319 GVTDDGMAVA 328
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.2 bits (183), Expect = 4e-15
Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
+ H V + F + ++ +D TIKVWD TG + +GH V +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 497 ENIH----------------------------------------FIFSISVDGKIKAWLY 516
+ I S S D IK W
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
+ + + + +G + SC + + W + K + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186
Query: 577 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
+S +L+ D IK+WD++ L T+
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679
+ F+ G + A++ +++ + + + L + +
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 680 GAGIANGSVSV 690
G + +V V
Sbjct: 305 VTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 8e-15
Identities = 44/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)
Query: 323 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 370
P+ + + G SP + FHP ++++ + +WD +G
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 371 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418
+ + +V+ V P+G + A
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478
++++ H V + + I +C +D+T++VW T
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178
Query: 479 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 520
H V + + + F+ S S D IK W +
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580
+ + + + G+ + SC + L W+ +T +
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNA---HEHF 291
Query: 581 VSVVHFDTAKDQILAAGDDHVIKIWD 606
V+ + F ++ D +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.9 bits (172), Expect = 1e-13
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 5/164 (3%)
Query: 749 IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 808
+ A SN + + R + + S S+ S
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSG 214
Query: 809 NDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 866
+ I ++ V T ++T++ + F+ I DD T+ +
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRV 273
Query: 867 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910
++ ++ + L H VT L F +V+ D + VW+
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (136), Expect = 4e-09
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)
Query: 802 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 849
+++ + S S + +++V T + + +++ P
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 850 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 901
+ G D TI +++ + + L GH V G++F ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 902 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948
D + VWD + ++L + + T + FHK +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)
Query: 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 902
T + F+P +V+ +D+TI +++ + + L+GH+ V + F + +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73
Query: 903 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962
+ + + + + + + + + +
Sbjct: 74 --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012
+ F + + D ++ + D T+ + + E + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 1e-05
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)
Query: 867 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 926
+ R E + L GH VT ++F +++VS+ DA I VWD + R+L+
Sbjct: 3 WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59
Query: 927 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 986
S I F + + +S + +
Sbjct: 60 D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 987 RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1046
+ ++ D T+ + E T H + T A
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162
Query: 1047 TNGEVYV 1053
+ V V
Sbjct: 163 NDQTVRV 169
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.5 bits (176), Expect = 6e-14
Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
++ P + G+ +WD +G + + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 445
SV VV++ DG + V+L+ ++ ++ V
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 501
+A + + I ++ D+ + WD +G+ +GH V S+ ++
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 502 IFSISVDGKIKAW 514
+ S D K + W
Sbjct: 371 FATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.0 bits (172), Expect = 2e-13
Identities = 46/397 (11%), Positives = 118/397 (29%), Gaps = 56/397 (14%)
Query: 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 596
+ + + + + +++ +N + L H + V V F + LA
Sbjct: 22 DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79
Query: 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656
G + +++ ++ L+ + ++P E+ +
Sbjct: 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113
Query: 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716
++ +R + +P G +A G+ + +I + + + L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169
Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPP 776
PS + + T V + + S +
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229
Query: 777 RLYQPRHGPQFMVNDT---TDSNSQEAVPCFALSKNDAYLFSAS-------------GGV 820
R++ G D+ + + +++V +++ + S S
Sbjct: 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289
Query: 821 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 880
+ +T + S+A ++ I G D +L ++ +S + L+G
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 881 HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 911
H V + ++ N+ + GD + +W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.7 bits (161), Expect = 5e-12
Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
++ +S + F L G N T ++ V+ L R
Sbjct: 56 HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112
Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
T+ + + V +SPDG L +++++ +++ + +
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
+ +++ D+T+++WD TG + + +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225
Query: 508 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
D ++ W ++ D+ + ++ +G+ + S + + + ++
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Query: 561 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
++ K G + V V + IL+ D + WD L
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345
Query: 616 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 648
+ + + A + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)
Query: 847 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 899
+P D IA G D + ++++ + ++ +L+ GH V +VF+ +VS
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 900 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 954
D + +W++ ++ + ++ L +
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 955 LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 1000
+ ++ + L + SV ++ ++ + + T D I
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 4e-06
Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)
Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
P +D L L++ + D+ L T+
Sbjct: 18 PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63
Query: 397 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 442
V V +S DG L +K + S A + E +
Sbjct: 64 -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502
+ + FS K + T +D+ I++WD +GH +Y + +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178
Query: 503 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
S S D ++ W + + T +G+ + + + + E
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
+ + +SV V F +++ D +K+W++ +
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 623 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 657
+ +N + + + + + N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 47/305 (15%), Positives = 102/305 (33%), Gaps = 21/305 (6%)
Query: 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 827
L T LY P + V + V C S + YL + +Y V
Sbjct: 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS 91
Query: 828 TFKTILTIMPPSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNA 869
+ + S S+ F+P D +A G +D I I++
Sbjct: 92 DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDI 150
Query: 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 929
+ +++ L+GH + + L + + + LVS GD + +WD+ S++ +
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210
Query: 930 TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 989
++P + R + V ++ + E L + + F+ D + V
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 990 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTN 1048
+ +D ++ + N + + + + ++ + ++ G +
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329
Query: 1049 GEVYV 1053
V
Sbjct: 330 RGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.001
Identities = 32/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)
Query: 837 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 892
P P L + + ++YN I K H+ V + FS+
Sbjct: 14 KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72
Query: 893 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952
L + G + V+ V + S + + + R +
Sbjct: 73 DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131
Query: 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012
+ E ++ W + + F G + + + V+
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191
Query: 1013 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1053
L T T S +A P A G + V V
Sbjct: 192 LRTGQCSLTLSIEDGVTT-VAVSPGDGKYIAAGSLDRAVRV 231
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.7 bits (166), Expect = 1e-12
Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)
Query: 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 900
+ A+N D IAI ++ + IY + + +L+ H+ +VTG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 901 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 960
G D +VW + G + + + + + + + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127
Query: 961 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1020
+ K + + + ++ D I A EV+ R T +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 1021 TTSC 1024
Sbjct: 188 MPFG 191
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.6 bits (158), Expect = 9e-12
Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
++ W+ D + + + + H V +Y G Q E+ H G V + ++ +I
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+TCG D+ VW + + + C N S I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 518 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 562
S + R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
S+ V V F ++ D + + D +K + T+ +
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 623 PENPRICFNKNGTLLAV 639
+ F +L+A
Sbjct: 245 -PLLAVTFITESSLVAA 260
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.9 bits (117), Expect = 1e-06
Identities = 33/360 (9%), Positives = 85/360 (23%), Gaps = 26/360 (7%)
Query: 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNK 632
+S ++ + QI ++H + I++ NK + + G + +
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT--GVDWAP 61
Query: 633 NGTLLAVIANENRIKILETPESNSVDAAGVLS--DNLRKLSVNPISTVTGAGIANGSVSV 690
+ + + + +L R + P G + +S+
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121
Query: 691 NEDPKEDVKPEISVEAE--------NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742
+E+ + L A S + S R
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181
Query: 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHG------PQFMVNDTTDSN 796
G + + + S + + T ++
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241
Query: 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 856
+ + + + L+ + L+ +
Sbjct: 242 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301
Query: 857 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 912
+D +A + + H V+ + + ++G D + +WDV
Sbjct: 302 QNLDKKASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)
Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 391
VG+ + ++ + + + L
Sbjct: 96 RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155
Query: 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451
+ ++S + + E + G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211
Query: 452 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
++ D T+ + DA + P+ ++ + ++ + D
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266
Query: 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571
+ YDS ++ + + + R K+ S EG+
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318
Query: 572 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 611
L NSVS + Q G D + IWD+ ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.002
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 478
GS A H +V+ ++ + K T G D + +WD +
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.0 bits (151), Expect = 7e-11
Identities = 44/365 (12%), Positives = 110/365 (30%), Gaps = 36/365 (9%)
Query: 568 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
+ T +G H + ++ + F+ + ++ DD +I+++D + L + G
Sbjct: 5 RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 626 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684
+ + G L++ R+ ++ V + + G
Sbjct: 59 --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 744
+ ++ V + PKE P+ E + PL E + R +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 745 GGQAIFALASNGVHLMW-RWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNS------ 797
G + N + + + LS + + +
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
Query: 798 ---------QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 848
Q L + ++ S+ +++
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 849 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 907
+N++ G ++ IYN RS +++ + + + ++ + F ++ + D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348
Query: 908 VWDVD 912
+ +D
Sbjct: 349 LEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 3e-09
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 498
H N++ + I + G + +++ +G ++ ++S+ K
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 499 IHFIFSISVDGKIKAWLYD 517
+ ++ DG+ + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
Query: 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 902
T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILVS
Sbjct: 17 TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72
Query: 903 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962
D + VWD+ +++ + + L +++ +
Sbjct: 73 DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 963 LTCLKQWFPISSVPISQATFSCDCRMVFT 991
+ + P+ T + V
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
VIT DDK I+V+D++ GH V++L + + S S D ++ W
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
++ + + S++ + W + + + +
Sbjct: 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608
H+ V H + H+ + ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
L ++ + L+ T+ + +
Sbjct: 47 LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 388 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 445
K G N + VW P S + +H L + + + H+ +V
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165
Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505
V++ D T+ VWD Y GH +Y S
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219
Query: 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
S+D I+ W + + + + G S +
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271
Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
R + ++++ + D IL +G ++ I+++ +L+
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328
Query: 626 PRICFNKNGTLLAVIANENRIKI 648
+ F TL+A + + + +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462
+ + + ++++Y + L++ H G V L ++ +++
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGGI---LVSGS 71
Query: 463 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
D+T++VWD G T+ FEGH + V L +NI +I + S D + W
Sbjct: 72 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 60.5 bits (145), Expect = 4e-10
Identities = 38/357 (10%), Positives = 90/357 (25%), Gaps = 25/357 (7%)
Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 643
+ ++ + + + D+ + + P + V+ N
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61
Query: 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 699
I ++ + A + S ++ G D
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759
P + V + KP+ P Q L+ + S +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG---SLYVAGPDIYKMDVKTGKYTVA 178
Query: 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 819
+ N S + + T + ++ A +
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL--------Y 230
Query: 820 VISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878
+ T KT + + +P D N I + + Y+ + ++I
Sbjct: 231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKLIKAA 288
Query: 879 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 935
+ F + L G + V++ D + ++++ P G M+ +
Sbjct: 289 N-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTPQ 342
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)
Query: 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 383
++ P + P T ++ + GD D+++ + F N
Sbjct: 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86
Query: 384 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 432
G S+ SPDG + + Y
Sbjct: 87 -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135
Query: 433 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
+ + V + + + K +R
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
+ E + L G T A+ L+
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255
Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVI 602
G + + + A Q ++ ++ V FD D++ G + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315
Query: 603 KIWDMNKVQLLTTIDAGGG 621
+++ + ++ + I GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 0.003
Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 18/167 (10%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---------KVWDIG 381
+ + P + + + + K ++ D+
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
+ D + SP + + + Y + ++
Sbjct: 239 TGKTHTQE--FADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLKQR----KLIKAANLD 291
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+AF + + G + V++ T + + + G +
Sbjct: 292 HTYYCVAFDKKGDK--LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 0.004
Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 14/186 (7%)
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
A A + + I + V D + + S + ++
Sbjct: 2 PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58
Query: 506 SVDGKIKAW------LYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEGESFL 557
+ G I G A S +G+ ++ T + + ++
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 558 VEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
V+ E + V+ A D I D+ +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178
Query: 616 IDAGGG 621
+
Sbjct: 179 LPLRNW 184
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 4e-10
Identities = 47/365 (12%), Positives = 120/365 (32%), Gaps = 38/365 (10%)
Query: 560 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
W E + +G H+ ++ + F ++I++ DD+ +K+W + L T+
Sbjct: 1 WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677
++ + + +K+ + + +R + ++
Sbjct: 55 G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110
Query: 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737
V+G+ A V E + V A + + + + + +
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL 170
Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNS 797
L + +N V+ + + ++ S + R++ G S
Sbjct: 171 HTLQGH----------TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-- 218
Query: 798 QEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 856
+ D L S + + ++ + T + + T+ P+ +++ + N +
Sbjct: 219 ----LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 274
Query: 857 IGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD----AQIF 907
DD T+ +++ ++ E I L G V + S+ + + ++
Sbjct: 275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334
Query: 908 VWDVD 912
V D D
Sbjct: 335 VLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+ + + H +V C +++ DD T+KVW AVTG + GH V
Sbjct: 4 GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 489 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543
+S + + + + + V R
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 544 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 583
++ T + V + +K LQ ++ V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643
+++ D I++WD+ + T+ ++ +L +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236
Query: 644 NRIKI 648
+ +KI
Sbjct: 237 STVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)
Query: 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407
++ G++ +W +G+ +R G S + ++ VW+ +
Sbjct: 28 NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85
Query: 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 457
H + H DA + + +
Sbjct: 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145
Query: 458 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513
V++ D +KVWD T + ++ +GH VYSL + S S+D I+
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201
Query: 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573
W ++ + G L S +S + W+ G +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255
Query: 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 630
++V+ + F+ K+ ++ + DD +K+WD+ ++ L T+++GG RI
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 631 NKNGTLLAV 639
+ + AV
Sbjct: 314 SNTKLVCAV 322
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
V++ D +I+VWD TG+ ++ GH + + + + S + D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
+ P + + + S +G L W+ G R L+
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 578 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 609
V + K + + + D +
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 6e-04
Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)
Query: 850 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 909
N I G DD+T+ +++A + + + L GH+ V D NI++S D + VW
Sbjct: 25 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82
Query: 910 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 969
+ + T + + +D T + E +
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130
Query: 970 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1029
+ + D R V + D + + + L +
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177
Query: 1030 HAIAAHPLKPTQFAVGLTNGEVYV 1053
+ + + G + + V
Sbjct: 178 NRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)
Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 370
E S + + ++ G +WD N+ +
Sbjct: 9 HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
I + + L + + ++ + ++
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
+D + + H VN + F + D+TIKVW+ T + GH +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
L + S S D I+ W D G + +R+ S
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG- 234
Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 602
+ + W+ R G V + FD + QI+++ D I
Sbjct: 235 ---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289
Query: 603 KIWD 606
IWD
Sbjct: 290 LIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 499
V L + +++ D TIK+WD T GH V L + I
Sbjct: 14 TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559
+V +A + S
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119
Query: 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
W+ + L + +V D I++A D IK+W+ + + + T++
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176
Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKI 648
+ C L+ +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 802 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 860
L D + S S I L+ + + + DN I G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236
Query: 861 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910
D I +++ ++ + L HS RV L F + +VSS D I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)
Query: 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 902
L + D+ I G+ D+TI I++ + E L GH+ V L + + + I
Sbjct: 19 YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69
Query: 903 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962
D + + + + +A+++
Sbjct: 70 -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1022
T + + + D + + ++ D T+ + S E
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172
Query: 1023 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1053
L+ + IA + G ++ + +
Sbjct: 173 -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 33/325 (10%), Positives = 79/325 (24%), Gaps = 18/325 (5%)
Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 648
+D ILA + + D K+ + I P G + N+ +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708
++ L +ST + +++ D K E V E
Sbjct: 61 IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107
Query: 709 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767
+ A + +I+ L + G ++ L + +
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
Query: 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 827
+ + + N S A D +A + +
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227
Query: 828 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 887
T + + + + + ++ + I ++
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNASIKRVP-LPHSYYS 284
Query: 888 LVFSDALNILVSSGGDAQIFVWDVD 912
+ S + + G + +D +
Sbjct: 285 VNVSTDGSTVWLGGALGDLAAYDAE 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)
Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 433
V D ++ K + D G + + +P G + S+ +V++ G + R
Sbjct: 14 VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 434 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492
L A S K +++ + ++ + +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 493 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545
+ + ++ + D + +L +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 546 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 592
+ + GL +++ V +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 651
A G +V++ +D+ K + + + + +G+ + + + +
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)
Query: 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 388
T+ + +PM P D+ +G+ L +
Sbjct: 28 TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77
Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 440
+ S+ SPDG L + S ++L + ++ + +
Sbjct: 78 ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133
Query: 441 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ LA++ + + V+ ++ + + V++
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
+ ++ D G D FS +
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 554 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
+ L ++ + A + +S V+ T + G + +D
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
Query: 608 NKVQLLTTIDAGGG 621
++ +D G
Sbjct: 309 ETLEKKGQVDLPGN 322
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 0.002
Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)
Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
++ + V D + + + G +++ +
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62
Query: 516 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
+ D A S +G+ L + E E + A+
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 571 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ ++++ + ++ G D + + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 0.003
Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390
S P + + G + + + + + G +M +T
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229
Query: 391 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
+ + V + + + + ++++ + ++ + +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
S + G + +DA T + + G SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 2e-09
Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)
Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
+ + + P + + G+ F+R D G +
Sbjct: 18 NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61
Query: 395 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 447
V V +SP L V ++ + ++ E G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
++ +++ V+ G D +G+ GH + + + +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
+ + D G + + + + ++ G
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240
Query: 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
+ + Q + G D I++WD+ + + N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 628 ICFNKNGT-LLAVIANENRIKI 648
+ G + ++ + +
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
T G D TI+VWD T + ++ + + A N I S+S+DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)
Query: 831 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 882
++ I+PP P T L+++P N + + + + S+V + + GH S
Sbjct: 4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63
Query: 883 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 940
VT + FS L S ++ VW + LA + I +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 941 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 988
+ R +V E +S
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 5e-06
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 848 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 904
+ D+ A D+TI +++ +S+ + K +++ V + ++S D
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 905 QIFVWDV 911
+ +++
Sbjct: 319 TLNFYEL 325
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 6e-09
Identities = 31/321 (9%), Positives = 74/321 (23%), Gaps = 10/321 (3%)
Query: 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651
Q + D +I + + T++ G + + + + + +K+ +
Sbjct: 24 QPVPFPPDALIGPGIPRHARQINTLNHGEVVC---AVTISNPTRHVYT-GGKGCVKVWDI 79
Query: 652 PESNSVDAAGVLSDNLRKLSVNPIS-TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710
+ L R + G + G + + P ++AE S
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139
Query: 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 770
S + + ++ Q + ++
Sbjct: 140 SAPACYALAISPDSK---VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 771 STEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 830
R + + +L + +
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 831 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 890
+ SL F D+ + + I + S V
Sbjct: 257 DKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDI 314
Query: 891 SDALNILVSSGGDAQIFVWDV 911
S +V+ GD + V++V
Sbjct: 315 SVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 8e-09
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + + P G + + + + ++ H V L F+ K
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
++ G D + W G+ + + V S + +I + S D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)
Query: 376 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
KVWDI + + + PDG L V + ++ + +
Sbjct: 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134
Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
+ S + G+ + + +T + G + C
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189
Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
+ +++ +D +++W +D + Y G L S
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248
Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
E V L L + V + F ++ G D+++ W +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
+ + + + + + + +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
+ ++ G +++ + G + +V S K I +T
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324
Query: 462 GDDKTIKVWD 471
DK V++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)
Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
F+ A+ P S + + DG + V + + G +Q+ H V
Sbjct: 3 FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 492
+ S P + + G +KVWD + S
Sbjct: 57 VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)
Query: 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 919
D+ I R + I+ L H + V + S+ + + GG + VWD+ G ++
Sbjct: 30 PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87
Query: 920 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 979
S + D ++ E + ++S +
Sbjct: 88 VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144
Query: 980 ATFSCDCRM 988
+
Sbjct: 145 YALAISPDS 153
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591
+ ++ G+ S G L W GA + +SV
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319
Query: 592 QILAAGDDHVIKIWD 606
I+ D +++
Sbjct: 320 YIVTGSGDKKATVYE 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.4 bits (131), Expect = 1e-08
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 836 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 894
+ P + +++A G D+ I IY+ + ++I L H V L++
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269
Query: 895 NILVSSGGDAQIFVWDV 911
+ LVSSG DA I W+V
Sbjct: 270 STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
I H + L + +I+ D I W + + + H + SL
Sbjct: 9 ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 497 ENIHFIFS 504
+ I
Sbjct: 58 QEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 459 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
T D I ++ + H V +L + S D IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473
++AH VN+L + P +++ G D IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 873 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912
EV+ + GH+K +T L + L+S D +I W
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 0.002
Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)
Query: 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 902
T+L NP + G D I+ +++ S + HS + L S A S
Sbjct: 17 TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66
Query: 903 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 956
D + + T + ++ L
Sbjct: 67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126
Query: 957 ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 998
+++ +L S + S + V G +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186
Query: 999 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058
+++ + EV+ + + ++ A G + +++
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246
Query: 1059 PGDTWAVL 1066
P L
Sbjct: 247 PMKIIKAL 254
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 5e-08
Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)
Query: 313 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 371
F +T+ F P+T + + + P + N V S
Sbjct: 2 EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52
Query: 372 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 431
I + SP G V+++ +
Sbjct: 53 I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93
Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
+ I G V D + + + A +
Sbjct: 94 LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
I S S D + + + + + Y+ +G S G
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211
Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
+ G + SV + + +I +A D IKIW++ ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271
Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
+ TI G + E+ ++ L I+ I
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 9e-07
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 7/119 (5%)
Query: 834 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 888
+ P P TA L P + I S + S HS + T
Sbjct: 7 ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64
Query: 889 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947
S + S + +WD ++ G + ++ +
Sbjct: 65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 848 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 904
D IA D TI I+N + +V + ++ + G++++ LVS +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303
Query: 905 QIFVWDVD 912
I + +
Sbjct: 304 FINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 514
+ + DKTIK+W+ T + + + SIS +G I
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.7 bits (124), Expect = 1e-07
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 498
H + L+ SA K + + + I WD TG F + H + + +K +
Sbjct: 11 HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 499 IHFIFS 504
+ +
Sbjct: 69 LFTVSW 74
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 901
T+L+ + D + + I ++ + + H+ +TG+ + L +
Sbjct: 16 TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73
Query: 902 GDAQIFVWDVDGWGIQTC 919
D + V G G+ +
Sbjct: 74 WDDHLKVVPAGGSGVDSS 91
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 12/69 (17%), Positives = 21/69 (30%)
Query: 873 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932
+ GH+K +T L S L S+ + I WD+ + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 933 PSETHIQFH 941
+ F
Sbjct: 63 TTSKGDLFT 71
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 847 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 904
DN +A G D++++++N S I H+ V +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290
Query: 905 QIFVWDV 911
I W+V
Sbjct: 291 NIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 40/298 (13%), Positives = 80/298 (26%), Gaps = 20/298 (6%)
Query: 325 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL------------- 370
++ Q G + ++ L G WD+++G
Sbjct: 3 SIDQVR-YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
++ + L S V LG+A S A
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
A V + + A + G + ++G+ + P
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
N F+ + K+ + + ++ ++A +
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
T S +V WN ++ + +SV+ V + I++AG D IK W+
Sbjct: 241 TGSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 486
AH ++ ++ ++C D +KVWD + H
Sbjct: 11 KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
V + + + S G + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 2e-07
Identities = 41/392 (10%), Positives = 97/392 (24%), Gaps = 42/392 (10%)
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 629
+ V ++ D +K+WD + D +
Sbjct: 15 ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72
Query: 630 --FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGAG 682
L+A + + + +L +++K S +
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132
Query: 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742
V D K ++S ++ E Q + + + +
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192
Query: 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 802
+ G + A N + + S +
Sbjct: 193 SERG--LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 803 CFALSKNDAYLFSASGGVISLYIVM-----TFKTILTIMPPSPTATSLAFNPHDNNVIAI 857
S + + + + + L S SL+FN +
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCS 306
Query: 858 GMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVDG 913
D + ++ ++ E I+ L H + L + + L G V+DV
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVKF 360
Query: 914 W--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 943
G ++ + + + + I++ ++
Sbjct: 361 LKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 5e-06
Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)
Query: 361 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420
+WD ++ + + V + + L+ +
Sbjct: 38 VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91
Query: 421 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 470
Y + + L+ D + L + A ++ ++ T +W
Sbjct: 92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151
Query: 471 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 515
+ S + +P L + + I + +G ++
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211
Query: 516 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
+L +++ R + L + + + G +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 571 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 618
+ V + F+ + + + +AG D ++ WD+ + +TT++
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331
Query: 619 GGGLPENPRICFNKNGTLLA 638
E + +++G LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)
Query: 305 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 364
E S + + ++ + S S+D L+ G N G + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212
Query: 365 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424
++ + L+ + I + + + + G +
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272
Query: 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484
++ L AH V L+F+ + + + G D ++ WD T R + H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330
Query: 485 GAPVYSLC 492
+
Sbjct: 331 CDDIEIEE 338
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 33/336 (9%), Positives = 86/336 (25%), Gaps = 18/336 (5%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654
+ D +++ ID G P +G+ +A A+ +I +
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77
Query: 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714
+ V+ ++ P + G S+ D K + + S A V+
Sbjct: 78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136
Query: 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEV 774
A + + G +
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196
Query: 775 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 834
+ T + + S + +L + +
Sbjct: 197 INHP--AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRPGGWQ 252
Query: 835 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS--D 892
+ + + +++ +A++ E ++K E + + S +
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDE 311
Query: 893 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 928
+ S GD +++ D ++ L++ + +
Sbjct: 312 KPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409
L+ T G D++SG F+ + + +V +
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261
Query: 410 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
+ + + + ++L ++ + S K +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321
Query: 464 DKTIKVWDAVTGSRTYSFEGHG 485
DKT+ + DA +G S G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (93), Expect = 7e-04
Identities = 32/323 (9%), Positives = 72/323 (22%), Gaps = 48/323 (14%)
Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTG---------LWDVNSGQKLFIRNFKVWDIG 381
I+G P + + T ++D +
Sbjct: 44 IDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102
Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
+ G ++ +SP ++ V +
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF------PT 156
Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
+ G + T ++ F +
Sbjct: 157 APDTFFMHCRDGSLA-KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-------KAGR 208
Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLG------------CTRMAYSANGRRLF---- 545
+ + GKI S A+ L ++AY R++
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268
Query: 546 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF--DTAKDQILAAGDDHV 601
K F+V + G ++ + + ++ D + D
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 602 IKIWDMNKVQLLTTIDAGGGLPE 624
+ I D + L +++ G P+
Sbjct: 325 LYIHDAESGEELRSVNQLGHGPQ 347
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)
Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
+ P + LL WD + V+ +
Sbjct: 16 DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58
Query: 399 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
+ + + + V + + G + +A++G + +
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ + + V + N + + +++ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 518 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 562
R P S +GR + + + +
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
+ L NS+ F + AG D +I W++ + +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293
Query: 623 PENPRICFNKNGTLLAVIANENRIKI 648
E+ + + +L + +++ K
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
++ + P SLL + + +Y + + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
+ + +KV + S ++ S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 576
G + S S + + L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 627
++ V ++ + D + + + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 628 ----ICFNKNGTLLAVIANENRIKI 648
I F+ L ++ I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 6e-06
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 446
+ + + + V + + D R L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
+ FS K + T G D I W+ T + +F + V + +
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 506 SVDGKIKAW 514
+ D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 837 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 893
P + + P +++ I D ++ +Y L + + F D
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 894 LNILVSSGGDAQIFVW 909
++ + G +
Sbjct: 68 TDLQIYVGTVQGEILK 83
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 873 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 930
+++ + ++ + + ++L+ + D + V+ D + +SL+ ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 931 LA 932
Sbjct: 62 CN 63
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)
Query: 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 357
D+SP F S G+ D T + E + + GT G
Sbjct: 8 EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65
Query: 358 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 394
D G++D +G+ + T + R
Sbjct: 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 450
+ S + + + + Y + D + A N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 451 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 503
++ D V + + + +
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245
Query: 504 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
++ ++ + P + + + L++++
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305
Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
+ N+++ + + ++ DD I + + K + T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)
Query: 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 389
++ F V ++ V + + D+ S
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
+ + + V + A K ++ Y ++ N+ DL
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322
Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
SA K + + DD I + + E P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)
Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395
S + DF P+ L+ + G + DV+ L +
Sbjct: 4 SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41
Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 450
+ + V D + + ++ L Y + + + + ++GNV +
Sbjct: 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99
Query: 451 ---------------------------------------------APCKQISVITCGDDK 465
+ +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
I V+D + + + P + ++ +S + L +
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216
Query: 526 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
+ + + R L+
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276
Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
SV A + V+ +D+ ++ + L + + +
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330
Query: 639 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 670
V ++ +I LE PE + + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 847 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 906
+ + +L Y+ ++ K+ +T L S ++ D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338
Query: 907 FVWDVDG 913
+ + ++
Sbjct: 339 YTFPLEK 345
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (111), Expect = 8e-06
Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)
Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 452
G +V+ S G L V V + + EI
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119
Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 502
K + + D T G H + + FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178
Query: 503 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
++ GKI Y L + + + R + ++ +
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238
Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
AI+ T + VH + D + + +
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.003
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)
Query: 837 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 895
P T + N+ ++ D I + + + E+ + L+ V S +
Sbjct: 16 APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74
Query: 896 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 953
L G D ++ + D+ T ++ ++ S + +
Sbjct: 75 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131
Query: 954 HLAIYEAEELTCLKQWFPISSVPISQAT 981
I + E L K Q
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.1 bits (108), Expect = 1e-05
Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)
Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
+ LL V ++ +C +
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171
Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
PG + + S SL + Q A N + A
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 453 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 506
I +G + +F G + + +
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289
Query: 507 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
+ S+G + G + + +G
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329
Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
+ V+ I+D Q ++++ G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.6 bits (104), Expect = 4e-05
Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)
Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 438
L G ++ V GS +A V+++ +I+
Sbjct: 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113
Query: 439 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
V+ + A + + S +
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171
Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 538
P A + S + A + A A M
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227
Query: 539 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 593
A + G + + +E G Q+ + + T +
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287
Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 650
+ Q I G I ++G + + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343
Query: 651 T 651
Sbjct: 344 A 344
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 11/170 (6%), Positives = 36/170 (21%), Gaps = 19/170 (11%)
Query: 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 391
+++ + G+ + + +M
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD---IPAAGATMKAAIDG 251
Query: 392 VRDPGVSVNR-------VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEI 437
+ N V + + + +H Q
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGP 309
Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487
++ + + + + + + + ++DA + S E P
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 40/381 (10%), Positives = 99/381 (25%), Gaps = 51/381 (13%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 653
D I + D + +++ ID G + +G L VI + RI I +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93
Query: 654 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 708
+ A + R + + ++ + + K +S
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 709 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFAL--ASNGVHLMW 761
R S + + + K+ + Y + A+ +
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213
Query: 762 RWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD------------SNSQEAVPCFALSKN 809
+ ++ ++ D + P ++ S
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273
Query: 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 863
S G + +K + + + + +P +++ +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333
Query: 864 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 909
+ +++ ++ + + L +KRV ++ + S + V
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393
Query: 910 DVDG---WGIQTCRSLQTPDG 927
D + L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.2 bits (98), Expect = 3e-04
Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 9/212 (4%)
Query: 837 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 895
P + N+ ++ D I + + S +++ ++ V S +
Sbjct: 16 KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74
Query: 896 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 953
L+ G DA+I + D+ ++ ++ + + +
Sbjct: 75 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGAYWPP 131
Query: 954 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH--EASNLEVQCR 1011
AI + E L + +Q + + I + + +
Sbjct: 132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191
Query: 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1043
L T+ +
Sbjct: 192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.0 bits (94), Expect = 5e-04
Identities = 38/288 (13%), Positives = 80/288 (27%), Gaps = 14/288 (4%)
Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 652
A + I + D+ ++ TI G NP + +GT + V N + I++T
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61
Query: 653 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712
A + + S V+ G ++ + + A
Sbjct: 62 ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115
Query: 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772
+ PL S L + +S + + P
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVA 175
Query: 773 EVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK-T 831
V DT + + AY+ + ++ ++ T
Sbjct: 176 NFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235
Query: 832 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879
I +P P +A P V +T+ + + ++ + + +
Sbjct: 236 ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.2 bits (92), Expect = 0.001
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474
+ + I + +A + K++ + T+ V D T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275
Query: 475 GSRTYSFEGHGAP 487
+ T + P
Sbjct: 276 NTITATMAVGKNP 288
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (88), Expect = 0.003
Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)
Query: 454 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
KQ I + + I VW+ V + + + + + ++
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61
Query: 512 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568
A+ A T ++ G+ +F + S + +
Sbjct: 62 LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121
Query: 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
+GL H++ T L + + D + + PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.6 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.53 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.5 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.28 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.25 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.13 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.11 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.04 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.01 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.0 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.95 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.94 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.93 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.93 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.92 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.87 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.85 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.57 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.56 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.4 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.19 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.93 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.82 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.82 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.81 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.79 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.77 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.74 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.73 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.72 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.71 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.68 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.64 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.6 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.57 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.56 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.47 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.43 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.29 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.24 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.19 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.1 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.04 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.63 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.67 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.0 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 94.03 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.97 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.79 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 92.7 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.47 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.39 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.86 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.57 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 90.32 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.14 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.03 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.49 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 80.57 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-36 Score=332.23 Aligned_cols=293 Identities=13% Similarity=0.168 Sum_probs=251.3
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..+++| +|.+.|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++|
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred eEEEEC-CCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence 344555 8999999999999999 689987 79999999988754421 112225679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|||++|++|+.||.|++||+..... .....+..|...+.+++|+|++. ++++++.|+.|++||+.++++.....+|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 99999999999999999999986543 22336778999999999999999 8999999999999999999999999999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
...|.+++|+ +++..+++++.||.+++||+++.+....+ .+...|.+++|+|+++++++++. ++.+++||..+
T Consensus 183 ~~~v~~l~~s--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~ 255 (337)
T d1gxra_ 183 TDGASCIDIS--NDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred cccccccccc--ccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceecc----ccccccccccc
Confidence 9999999985 46789999999999999999988766554 35678999999999999999876 45599999998
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
++... ...|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+... ..|.+++|+|++++|++++.||
T Consensus 256 ~~~~~-~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~ 328 (337)
T d1gxra_ 256 PDKYQ-LHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp SCEEE-ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTS
T ss_pred ccccc-ccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCC
Confidence 87653 44455 78999999999999999999999999999999998887643 3589999999999999999999
Q ss_pred cEEEEeC
Q 001386 645 RIKILET 651 (1088)
Q Consensus 645 ~i~iwd~ 651 (1088)
+|+|||+
T Consensus 329 ~I~vWdl 335 (337)
T d1gxra_ 329 KATVYEV 335 (337)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6e-36 Score=325.89 Aligned_cols=289 Identities=21% Similarity=0.358 Sum_probs=264.4
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
..++|.||++.|++|+|+|+++ +||+|+.||+|+|||+.+++.+.+ +.+|...|.+++|+
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~ 68 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFD 68 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeee
Confidence 3467999999999999999998 799999999999999999988765 77899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
|++.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++||+.+++.+..+.+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 143 (317)
T d1vyhc1 69 HSGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHR 143 (317)
T ss_dssp TTSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ccccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCC
Confidence 999999999999999999998876444 5678999999999999999 79999999999999999999999999999
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCC--------------------EEE
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--------------------RLF 545 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--------------------~l~ 545 (1088)
..+.+++++ +++.+|++++.||.|++|++.+......+..+...+.+++|+|++. .++
T Consensus 144 ~~~~~~~~~--~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (317)
T d1vyhc1 144 EWVRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 221 (317)
T ss_dssp SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred Ccceeeecc--cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE
Confidence 999999984 5678999999999999999999999999999999999999987653 466
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
+++. ++.|++||..+++.+..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++++..+..|.. .|
T Consensus 222 ~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V 292 (317)
T d1vyhc1 222 SGSR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FV 292 (317)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CE
T ss_pred eccC----CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CE
Confidence 6654 5679999999999999999988 8999999999999999999999999999999999999987754 69
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 626 PRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
.+++|+|++++|++|+.||+|+|||
T Consensus 293 ~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 293 TSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.7e-35 Score=315.48 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=247.4
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+.+.+.+++++|+|+. +|.+. ++.|.+||+.++..... +.+|...|++++|+|||++|
T Consensus 15 ~~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~l 73 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 73 (311)
T ss_dssp CCTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred CCCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeE
Confidence 34456788999999995 56654 47799999999877654 77899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC--CCcEEEEeCCCCceeEEeccCCccEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
|+|+.||+|+|||+.+++.... ..+.+|.++|.+++|+|+++ ++++++. +..+++|++++++....+.+|...|.
T Consensus 74 atg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~ 150 (311)
T d1nr0a1 74 ASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150 (311)
T ss_dssp EEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred eccccCceEeeeeeeccccccc-cccccccCcccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998875432 25788999999999999999 6777764 56699999999999999999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
+++|+++.+ ..+++|+.||.|++||+++.+.......+...|.+++|+|+++++++++. ++.|++||..++....
T Consensus 151 ~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~ 225 (311)
T d1nr0a1 151 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 225 (311)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred cccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----cccccccccccccccc
Confidence 999965422 35889999999999999999988899999999999999999999999875 4559999999998887
Q ss_pred EEeccc----cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 570 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
.+.... .|...|.+++|+|++++|++|+.||.|+|||+++++++.++..+... ....+.+.+++..+++++.||.
T Consensus 226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 775432 23478999999999999999999999999999999999999866432 2344566667778999999999
Q ss_pred EEEEeCC
Q 001386 646 IKILETP 652 (1088)
Q Consensus 646 i~iwd~~ 652 (1088)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999964
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-35 Score=321.03 Aligned_cols=305 Identities=19% Similarity=0.319 Sum_probs=263.0
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
.|.||.++|++++|+|+++ +|+||+.||+|+|||+.+++++.++.+|...|.+++++ +++.++++++.++.+.+|+
T Consensus 12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~--~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred EEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeee--ccccccccccccccccccc
Confidence 6889999999999999999 89999999999999999999999999999999999994 5778999999999999999
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
.........+..+...+.++.+++++..+++++. ++.+.+||+.+++.+..+.+|. ..+.+++|++++.++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----DKTIKMWEVQTGYCVKTFTGHR---EWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTCCEEEEEECCS---SCEEEEEECTTSSEEEE
T ss_pred ccccccccccccccccceeeeccCCCceEEeecc----CcceeEeecccceeeeEEccCC---CcceeeecccCCCEEEE
Confidence 9998888888889999999999999999999875 5669999999999999999888 88999999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCC
Q 001386 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1088)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 675 (1088)
++.|+.|++|+..+++....+..+.. .+.+++|+|++....
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~------------------------------------- 201 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELREHRH--VVECISWAPESSYSS------------------------------------- 201 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGGG-------------------------------------
T ss_pred EeCCCeEEEEeeccceeeEEEecCCC--CceEEEEeeccccce-------------------------------------
Confidence 99999999999999888877765433 355555554321100
Q ss_pred CcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc
Q 001386 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1088)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 755 (1088)
...
T Consensus 202 ---------------------------------------------------------------------------~~~-- 204 (317)
T d1vyhc1 202 ---------------------------------------------------------------------------ISE-- 204 (317)
T ss_dssp ---------------------------------------------------------------------------GGG--
T ss_pred ---------------------------------------------------------------------------eec--
Confidence 000
Q ss_pred cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEE
Q 001386 756 GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 834 (1088)
Q Consensus 756 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 834 (1088)
...........++.++++++ |+.|++||+.+++.+.+
T Consensus 205 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 242 (317)
T d1vyhc1 205 ------------------------------------------ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242 (317)
T ss_dssp ------------------------------------------CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ------------------------------------------cccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence 00000112233556777776 89999999999999999
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 835 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 835 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
+.+|...|++++|+| ++++|++|+.||.|+|||+.+++++..+.+|.++|++++|+|++++|++++.||+|+|||
T Consensus 243 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 243 LVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999 899999999999999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-34 Score=317.94 Aligned_cols=283 Identities=13% Similarity=0.183 Sum_probs=244.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCccccee--EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+|...|.+++|||+|++||+|+ ||.|+|||+.++....... ...+|.+.|.+++|+||++ +|++++.|+.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence 6999999999999999999987 8999999998776544322 3457999999999999999 899999999999999
Q ss_pred CCCC--ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 472 AVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
+... +....+..|...+..++++ +++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8754 5567788899999999984 57789999999999999999999888888889999999999999999999875
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
++.+++||+++++.+..+. +. ..|.+++|+|+++++++++.|+.+++||+.+++..... . +...|.+++
T Consensus 204 ----d~~v~i~d~~~~~~~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~--~~~~i~~v~ 272 (337)
T d1gxra_ 204 ----DNTVRSWDLREGRQLQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-L--HESCVLSLK 272 (337)
T ss_dssp ----TSEEEEEETTTTEEEEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC-C--CSSCEEEEE
T ss_pred ----cccccccccccceeecccc-cc---cceEEEEEcccccccceecccccccccccccccccccc-c--cccccceEE
Confidence 5669999999999887765 33 68999999999999999999999999999988775443 2 334689999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcc
Q 001386 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 709 (1088)
|+|++++|++++.||.|++||..+++.+...
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~------------------------------------------------- 303 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------------------------------------------- 303 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-------------------------------------------------
Confidence 9999999999999999999999876543221
Q ss_pred ceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 710 i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
.|...|.+++|+|++++|++++.||.|++|++
T Consensus 304 ----------------------~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 ----------------------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ----------------------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ----------------------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 15567888999999999999999999999986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.7e-34 Score=321.46 Aligned_cols=303 Identities=15% Similarity=0.236 Sum_probs=240.6
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
.+|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|.+++|+|||++
T Consensus 59 ~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSE
T ss_pred CCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEECCCCCc
Confidence 37999999999999999 689987 899999999999877643211000 000111222235578899999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++||..+.........+...+ .
T Consensus 136 l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~ 209 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-T 209 (388)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSSCEE-E
T ss_pred ceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccccccc-c
Confidence 9999999999999999886554 6789999999999999998 78999999999999999988887777555544 4
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
+.+. ..++.+|++++.||.|++||..+......+ ..|...|.+++|+|++++|++++. ++.|++||+.
T Consensus 210 ~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~ 284 (388)
T d1erja_ 210 VAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQ 284 (388)
T ss_dssp EEEC-STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC-
T ss_pred cccc-CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEecc
Confidence 4444 346789999999999999999988765544 345678999999999999999875 5569999988
Q ss_pred CCcee------------EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE--
Q 001386 564 EGAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-- 629 (1088)
Q Consensus 564 ~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-- 629 (1088)
++... .....|. ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~~~~ 359 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVA 359 (388)
T ss_dssp --------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEC
T ss_pred CCccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEEe
Confidence 65433 2333344 7899999999999999999999999999999999999987754 577776
Q ss_pred ----EecCCCEEEEEeCCCcEEEEeCC
Q 001386 630 ----FNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 630 ----~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
|+|++++|++|+.||+|+||+++
T Consensus 360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 360 NGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 46789999999999999999975
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-33 Score=309.92 Aligned_cols=294 Identities=19% Similarity=0.269 Sum_probs=257.7
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
...++|.||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+.. +..|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEe
Confidence 45688999999999999999999 799999999999999999987765 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+|++.++++|+.|+.+++|+....... .....+.+|...........+. .+.....|.....|+............
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 999999999999999999998765542 2334567888877777766654 577888899999999888888878888
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
+...+....+. +.+.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||..
T Consensus 183 ~~~~~~~~~~~--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cceeEeeeccc--cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeec
Confidence 88888888774 45679999999999999999999999999999999999999999999999976 5569999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
.......+.... +...+.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.+++|+|++++|++|+.|
T Consensus 257 ~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~D 333 (340)
T d1tbga_ 257 ADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTEEEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETT
T ss_pred cccccccccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccC
Confidence 988877765433 346799999999999999999999999999999999999987754 69999999999999999999
Q ss_pred CcEEEEe
Q 001386 644 NRIKILE 650 (1088)
Q Consensus 644 g~i~iwd 650 (1088)
|.|+|||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-33 Score=316.64 Aligned_cols=347 Identities=15% Similarity=0.230 Sum_probs=260.3
Q ss_pred EEEeCCCEEEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
..+..++...+|+....+.+. .+....+|.+.|++++|+|||+ +|++|+ |++|+|||+.+++.+..+..+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 345677788899987665432 1223347999999999999999 788887 899999999999999888766543322
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEE
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1088)
... + .......+...|.+++|+|+|++|++++. ++.|++||..+++.+..
T Consensus 109 ~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~ 158 (388)
T d1erja_ 109 PEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMI 158 (388)
T ss_dssp ------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEE
T ss_pred ccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----ccccccccccccccccc
Confidence 110 0 01112345668999999999999999986 45699999999999999
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEEeCCCcEEEE
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKIL 649 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw 649 (1088)
+.+|. ..|.++.+++++..+++++.++.+++||..+.........+.. ..++.+++ ++++|++++.||.|++|
T Consensus 159 ~~~h~---~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~ 232 (388)
T d1erja_ 159 LQGHE---QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVW 232 (388)
T ss_dssp ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEE
T ss_pred ccccc---ccccccccccccccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEe
Confidence 99888 8999999999999999999999999999999888877765543 34555555 88999999999999999
Q ss_pred eCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecC
Q 001386 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729 (1088)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 729 (1088)
+..++.....+.... ..
T Consensus 233 ~~~~~~~~~~~~~~~---------------------------------------------------------------~~ 249 (388)
T d1erja_ 233 DSETGFLVERLDSEN---------------------------------------------------------------ES 249 (388)
T ss_dssp ETTTCCEEEEEC--------------------------------------------------------------------
T ss_pred ecccCccceeecccc---------------------------------------------------------------cc
Confidence 998765443322100 00
Q ss_pred CccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC
Q 001386 730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 809 (1088)
Q Consensus 730 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1088)
..+|...|.+++|+|+++.+++++.||.+++|++..... ... ..
T Consensus 250 ~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~------------------~~~--------------~~---- 293 (388)
T d1erja_ 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN------------------KSD--------------SK---- 293 (388)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------------------------------------
T ss_pred ccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc------------------ccc--------------cc----
Confidence 123667788888888888888888888888887643321 000 00
Q ss_pred CCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEE
Q 001386 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 889 (1088)
Q Consensus 810 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~ 889 (1088)
....+........|...|++++|+| ++++|++|+.||.|++||+.+++++..+++|.+.|.+++
T Consensus 294 ---------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~ 357 (388)
T d1erja_ 294 ---------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357 (388)
T ss_dssp --------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ---------------cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 0001223344556888999999999 899999999999999999999999999999999999997
Q ss_pred E------CCCCCEEEEEeCCCcEEEEEcC
Q 001386 890 F------SDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 890 ~------s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
+ +|++++||||+.||+|+||+++
T Consensus 358 ~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 358 VANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 5 6799999999999999999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-33 Score=307.89 Aligned_cols=344 Identities=17% Similarity=0.269 Sum_probs=249.3
Q ss_pred eeecCCCCCe-EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 390 ALVRDPGVSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 390 ~~~~~h~~~V-~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
..|.||...| +|++| ||++||+|+.||+|+|||+.+++.+. ++.+|.+.|++++|+|++ +|++|+.|++|+
T Consensus 6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEE
T ss_pred EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEecccccc
Confidence 3488998886 56555 68999999999999999999987655 788999999999999864 689999999999
Q ss_pred EEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+|++..+++......+............+++.++++++.|+.|++||+................ .....+.
T Consensus 78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~-------- 148 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPE-------- 148 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTT--------
T ss_pred cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceeccc--------
Confidence 9999999988777766666665555567788999999999999999998655433222111110 0111111
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
...........+. ..+. .+.++++.++++..|+.|++||+.+++.+.....+.. .+.++
T Consensus 149 --------------~~~~~~~~~~~~~---~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~ 207 (355)
T d1nexb2 149 --------------ENPYFVGVLRGHM---ASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYST 207 (355)
T ss_dssp --------------TCTTEEEEEECCS---SCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEE
T ss_pred --------------cccceeeeeeecc---cccc--ccccccceeeeecccceeeeeecccccceeeeecccc--ccccc
Confidence 1112222233333 3343 4556788999999999999999999999888875543 57899
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
.|+|++.++++++.|+.|++|+..++..+..+.
T Consensus 208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----------------------------------------------- 240 (355)
T d1nexb2 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQ----------------------------------------------- 240 (355)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------------------
T ss_pred cccccceeeecccccceEEeeeccccccccccc-----------------------------------------------
Confidence 999999999999999999999988654332221
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
T Consensus 241 -------------------------------------------------------------------------------- 240 (355)
T d1nexb2 241 -------------------------------------------------------------------------------- 240 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEE-EEcCCCCcEEEEEeCCCeEEE
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSL-AFNPHDNNVIAIGMDDSTILI 866 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~lasg~~dg~i~l 866 (1088)
+|...|.+++++ ++++++++ ||.|++||+.++..... .|...+.++ ++++ +++++++|+ ||.|+|
T Consensus 241 -------~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~g~-d~~i~v 307 (355)
T d1nexb2 241 -------GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYV-SDNILVSGS-ENQFNI 307 (355)
T ss_dssp -------CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEE-CSSEEEEEE-TTEEEE
T ss_pred -------cccccccccccc--cceeeeeecccccccccccccceecc--cccCCceEEEEEcC-CCCEEEEEe-CCEEEE
Confidence 144455555554 34666665 67777777776654333 344455544 4566 777777665 899999
Q ss_pred EEcCCceeee-eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 867 YNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 867 wd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
||+++++++. .+.+|.++|.+++|+|+ .++++++.||+++||.++
T Consensus 308 wd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 308 YNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp EETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred EECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence 9999999885 57889999999999987 578889999997776543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.5e-33 Score=302.70 Aligned_cols=295 Identities=13% Similarity=0.137 Sum_probs=231.3
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+.++|.||++.|++++|||||+ +||+|+.||+|++||+.+++.+... ..+|...|.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~------------------~~~h~~~v~~v~~ 63 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVF------------------PDVHATMITGIKT 63 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECS------------------SCSCSSCEEEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEE------------------cCCCCCcEEEEEe
Confidence 46789999999999999999999 6899999999999999999877541 3469999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|+|+++ +++.|+.+++|+...............|...+.+++|+++++ +++++ .++.+++|+.. +..... .
T Consensus 64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~--~~~~~~--~ 135 (299)
T d1nr0a2 64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG--KLTEVP--I 135 (299)
T ss_dssp CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT--EEEEEE--C
T ss_pred eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc--cccccc--c
Confidence 9999765 556789999999876543333323456788999999999998 45544 46789999843 222222 3
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
...+.+++++ +++.++++++.||.|++||+++..... ....+...|.+++|+|++++|++++. ++.|++||..
T Consensus 136 ~~~~~~~~~s--~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~ 209 (299)
T d1nr0a2 136 SYNSSCVALS--NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVA 209 (299)
T ss_dssp SSCEEEEEEC--TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGG
T ss_pred cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence 4456777774 577899999999999999998776543 44567789999999999999999875 4459999998
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
++...........|...|.+++|+|+++++++|+.||.|++||+.++..........+........+++++++|++++.|
T Consensus 210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D 289 (299)
T d1nr0a2 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289 (299)
T ss_dssp GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETT
T ss_pred ccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCC
Confidence 88766544444444489999999999999999999999999999987655544433332223334455677899999999
Q ss_pred CcEEEEeCC
Q 001386 644 NRIKILETP 652 (1088)
Q Consensus 644 g~i~iwd~~ 652 (1088)
+.|++||+.
T Consensus 290 ~~i~iWdl~ 298 (299)
T d1nr0a2 290 SNIKFWNVP 298 (299)
T ss_dssp SCEEEEECC
T ss_pred CEEEEEecc
Confidence 999999975
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.3e-33 Score=300.43 Aligned_cols=286 Identities=11% Similarity=0.100 Sum_probs=232.5
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
....++++|+|+.|+.+. ++.+.+|++.+......+.
T Consensus 19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~------------------------------------------ 55 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT------------------------------------------ 55 (311)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC------------------------------------------
T ss_pred CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEc------------------------------------------
Confidence 346789999999999886 5679999998664433322
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
+|...|.+++|+|+|++|++++.||.|++|++.....
T Consensus 56 ----------------------------~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~--------------- 92 (311)
T d1nr0a1 56 ----------------------------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--------------- 92 (311)
T ss_dssp ----------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------
T ss_pred ----------------------------CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc---------------
Confidence 2667888999999999999999999999998765432
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeC---CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEe
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGM 859 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~ 859 (1088)
.....+. .|...|.+++|+|++++++++++ ..+++|++++++...++.+|...|++++|+| +++ ++++|+
T Consensus 93 ---~~~~~~~--~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs 166 (311)
T d1nr0a1 93 ---ILKTTIP--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGS 166 (311)
T ss_dssp ---CEEEEEE--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEE
T ss_pred ---ccccccc--cccCccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceeeecccc
Confidence 2222222 37889999999999999999873 4599999999999999999999999999999 555 588999
Q ss_pred CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee--ecCCCCccCCCCeEE
Q 001386 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL--QTPDGVMTLAPSETH 937 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~v~~ 937 (1088)
.||.|++||+++++....+.+|..+|+++.|+|++++|++++.|+.|++||+.++........ ....+|. ..|.+
T Consensus 167 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~---~~V~~ 243 (311)
T d1nr0a1 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS---GSVFG 243 (311)
T ss_dssp TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS---SCEEE
T ss_pred cccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccc---ccccc
Confidence 999999999999999999999999999999999999999999999999999998654322111 1112333 37999
Q ss_pred EEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 938 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 938 ~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
++|+|++++|++ +.|+.|+|||+++++++..+...+......+.+.+++.+|++++.||.|++||.+
T Consensus 244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999999999999 5789999999999999988654443333444555667789999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.2e-33 Score=306.43 Aligned_cols=347 Identities=15% Similarity=0.195 Sum_probs=266.0
Q ss_pred eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 522 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
+.++.+|...|.. ++++++++|++++. ++.|++||..+++.+..+.+|. +.|.+++|+|+ +++++++.|+.
T Consensus 5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~~ 75 (355)
T d1nexb2 5 RTTLRGHMTSVIT-CLQFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDRT 75 (355)
T ss_dssp EEEEECCSSSCEE-EEEEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTCC
T ss_pred cEEECCcCCCcEE-EEEECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEecccc
Confidence 4467788877532 34557889999975 5669999999999999999988 89999999985 68999999999
Q ss_pred EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceec
Q 001386 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 681 (1088)
|++|+....+..................+++++.++++++.|+.|++|++.+..............
T Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-------------- 141 (355)
T d1nexb2 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-------------- 141 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC--------------
T ss_pred cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec--------------
Confidence 999999999888877765554445667788899999999999999999998664332211100000
Q ss_pred cccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEE
Q 001386 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 761 (1088)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw 761 (1088)
.....+....... ...
T Consensus 142 ---------------------------------------------------------~~~~~~~~~~~~~-------~~~ 157 (355)
T d1nexb2 142 ---------------------------------------------------------LVFHTPEENPYFV-------GVL 157 (355)
T ss_dssp ---------------------------------------------------------EEESCTTTCTTEE-------EEE
T ss_pred ---------------------------------------------------------cceecccccccee-------eee
Confidence 0000000000000 000
Q ss_pred EccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCC
Q 001386 762 RWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP 840 (1088)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~ 840 (1088)
. .|...+ ..+.+++.+++++. ++.|++||+.+++.+....++..
T Consensus 158 ~---------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 202 (355)
T d1nexb2 158 R---------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 202 (355)
T ss_dssp E---------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred e---------------------------------eccccc--cccccccceeeeecccceeeeeecccccceeeeecccc
Confidence 0 123333 34556788888887 89999999999999999999999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001386 841 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 841 ~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~ 920 (1088)
.+.++.|+| ++.++++++.||.|++||+.++..+..+.+|...|.+++|+ +++|++++.||+|++||+.+....
T Consensus 203 ~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--- 276 (355)
T d1nexb2 203 RIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--- 276 (355)
T ss_dssp CEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE---
T ss_pred ccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee---
Confidence 999999999 89999999999999999999999999999999999999997 469999999999999999986532
Q ss_pred eeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEE
Q 001386 921 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1000 (1088)
Q Consensus 921 ~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~v 1000 (1088)
+.. |.. ......+|++++++++++.|+.|++||+++|+++.....+|...|.+++|+|+ .++++++.||+++|
T Consensus 277 -~~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l 349 (355)
T d1nexb2 277 -FSY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFL 349 (355)
T ss_dssp -EEE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEE
T ss_pred -ccc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEE
Confidence 111 111 11233567899999999999999999999999998778889999999999986 47788899999777
Q ss_pred EEc
Q 001386 1001 HEA 1003 (1088)
Q Consensus 1001 wd~ 1003 (1088)
|.+
T Consensus 350 ~~~ 352 (355)
T d1nexb2 350 EIL 352 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-33 Score=315.51 Aligned_cols=264 Identities=11% Similarity=0.046 Sum_probs=210.5
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
.++|+|++|||||+ +||+|+.|+.|+|||+.+++.... ..+.+|.++|.+++|+|++++||+
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence 35899999999999 789999999999999988764332 127789999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----EEeccCCccEE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY 489 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~v~ 489 (1088)
|+.|++|+|||+.++.... ...+.+|...|.+++|+|+++ .+++++.|++|++|++...... .....|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 9999999999998775332 335678999999999999999 8999999999999998876543 34467899999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
+++|+| ++.+|++|+.||.|++||............. +. ..+...+....
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~------------------~~~~~~~~~~~ 195 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PW------------------GSKMPFGELMF 195 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TT------------------BSCCCTTCEEE
T ss_pred cccccc--cccceeccccCcEEEEEeeccCccccccccc----------cc------------------cccccceeeee
Confidence 999954 7789999999999999998754322111000 00 00112334445
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
...+|. ..+.+++|+|+++++++++.|+.|++||+.+++.+..+..+.. +|.+++|+|+++++++|. |+.+++|
T Consensus 196 ~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~-d~~~~~~ 269 (371)
T d1k8kc_ 196 ESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGH-DCFPVLF 269 (371)
T ss_dssp ECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred eccCcc---CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEc-CCceEEE
Confidence 555566 8899999999999999999999999999999999999887643 689999999998887665 6777776
Q ss_pred eCCCC
Q 001386 650 ETPES 654 (1088)
Q Consensus 650 d~~~~ 654 (1088)
.....
T Consensus 270 ~~~~~ 274 (371)
T d1k8kc_ 270 TYDSA 274 (371)
T ss_dssp EEETT
T ss_pred EeeCC
Confidence 65543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-31 Score=295.57 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=257.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.+++|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence 88999999999999999999999999999999999987655 6789999999999999999 899999999999999
Q ss_pred CCCC----ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.... .....+.+|........... +..+.....|.....+.................+....+.+.+.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 7654 34566777887776665432 3478889999999999998888888888888899999999999999998
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
.. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++++++++.||.|++|++.....+..+........+.+
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred ec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 75 5569999999999999999888 8999999999999999999999999999999999888876666667899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ |++.++++++.|
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s----------------------~d~~~l~s~s~D 333 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe----------------------CCCCEEEEEccC
Confidence 9999999999999999999999999999999999999999999997 678899999999
Q ss_pred ccceecc
Q 001386 708 NKSEVEK 714 (1088)
Q Consensus 708 ~~i~vw~ 714 (1088)
++|++||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-30 Score=286.32 Aligned_cols=330 Identities=16% Similarity=0.224 Sum_probs=262.3
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
...++|+||++.|.+ +++++|+ +||||+.||+|+|||+.+++++.+ +.+|.+.|.+++|
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~ 65 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQM 65 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEE
T ss_pred CcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEe
Confidence 455789999999975 4777898 689999999999999999998765 7789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|+ +|++|+.|+.+++|+........ ....+...+....+.+ . .+..+..|+.+.+|+..+++....+..+
T Consensus 66 ~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 136 (342)
T d2ovrb2 66 RDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGH 136 (342)
T ss_dssp ETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred CCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecc
Confidence 875 99999999999999998765433 3445556666665544 3 5778899999999999999988877766
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
......... ....+++++.|+.|++||.........+..+...+. .+++++.++++++. ++.|++||...
T Consensus 137 ~~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~----dg~i~~~d~~~ 206 (342)
T d2ovrb2 137 VAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSL----DTSIRVWDVET 206 (342)
T ss_dssp SSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEET----TSCEEEEETTT
T ss_pred cccceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeC----CCeEEEeeccc
Confidence 555444322 345789999999999999998888888877766554 45567899999886 45599999999
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
++.+..+.+|. ..+.++.+++ +++++++.|+.|++||....+....+..+... .....++.++++++++++.||
T Consensus 207 ~~~~~~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~s~Dg 280 (342)
T d2ovrb2 207 GNCIHTLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKNFVITSSDDG 280 (342)
T ss_dssp CCEEEEECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSSEEEEEETTS
T ss_pred ceeeeEecccc---cceeEEecCC--CEEEEEcCCCEEEEEeccccccccccccccee-eeceeecccCCCeeEEEcCCC
Confidence 99999999888 7888877764 69999999999999999999888888754321 234455556678999999999
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.|++||+.+++.+..+...
T Consensus 281 ~i~iwd~~tg~~i~~~~~~------------------------------------------------------------- 299 (342)
T d2ovrb2 281 TVKLWDLKTGEFIRNLVTL------------------------------------------------------------- 299 (342)
T ss_dssp EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred EEEEEECCCCCEEEEEecc-------------------------------------------------------------
Confidence 9999999988665433210
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccc----eEEEEccC
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 765 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~----v~iw~~~~ 765 (1088)
...+|...|.+++|+|++..+++++.||+ +++||++.
T Consensus 300 ----~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 300 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ----cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 11236678999999999999999988885 88888753
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-31 Score=299.21 Aligned_cols=306 Identities=13% Similarity=0.120 Sum_probs=237.5
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1088)
..+|++++|+|||++|++++. ++.|++||..+++ .+..+.+|. +.|.+++|+|++++|++++.|++|++||
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd 79 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWT 79 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence 357999999999999999865 4569999998775 566778887 8999999999999999999999999999
Q ss_pred cCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCC
Q 001386 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
+.++.....+....+...|.+++|+|+++.+++++.|+.+++|+...........
T Consensus 80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~------------------------- 134 (371)
T d1k8kc_ 80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK------------------------- 134 (371)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-------------------------
Confidence 9988777666655555679999999999999999999999999877542211100
Q ss_pred ceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCC
Q 001386 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1088)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 766 (1088)
.....|...|.+++|+|+++++++++.|+.+++|+....
T Consensus 135 -----------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~ 173 (371)
T d1k8kc_ 135 -----------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173 (371)
T ss_dssp -----------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred -----------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence 011236678999999999999999999999999998755
Q ss_pred CCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEE
Q 001386 767 DLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSL 845 (1088)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 845 (1088)
...... ....|+........... ...|...|.+++|+|+|++|++++ |+.|++||+.+++.+..+..|..+|.++
T Consensus 174 ~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~ 249 (371)
T d1k8kc_ 174 EVEERP--APTPWGSKMPFGELMFE--SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 249 (371)
T ss_dssp TTSCCC--CCBTTBSCCCTTCEEEE--CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred cccccc--ccccccccccceeeeee--ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceee
Confidence 432211 12223322222111211 234888999999999999999998 8999999999999999999999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCC--ceee---------------------------------------eeeccccCC
Q 001386 846 AFNPHDNNVIAIGMDDSTILIYNARS--SEVI---------------------------------------SKLEGHSKR 884 (1088)
Q Consensus 846 ~~sp~d~~~lasg~~dg~i~lwd~~~--~~~~---------------------------------------~~l~~h~~~ 884 (1088)
+|+| ++++|++|. |+.+++|.... +... .....|.+.
T Consensus 250 ~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 327 (371)
T d1k8kc_ 250 TFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 327 (371)
T ss_dssp EEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred eecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCC
Confidence 9999 888888765 67666655432 2110 000238889
Q ss_pred eeEEEECCCC----CEEEEEeCCCcEEEEEcCC
Q 001386 885 VTGLVFSDAL----NILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 885 V~~l~~s~dg----~~las~s~Dg~i~iwd~~~ 913 (1088)
|+++++.+++ ..++|+|.||.|+|||+++
T Consensus 328 I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred EEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 9999998754 4689999999999999976
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.6e-31 Score=285.61 Aligned_cols=293 Identities=13% Similarity=0.153 Sum_probs=226.5
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
|+..+.+.||. ..|++++|+|++++|++|+.||+|++||+.+++.+..+.. .+...|.+++|+|+++++ +++.|+
T Consensus 2 g~~~~~~~GH~---~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~h~~~v~~v~~~~~g~~~-~~~~d~ 76 (299)
T d1nr0a2 2 GSIDQVRYGHN---KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATMITGIKTTSKGDLF-TVSWDD 76 (299)
T ss_dssp TEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-SCSSCEEEEEECTTSCEE-EEETTT
T ss_pred CccceEcCCCC---CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCCcEEEEEeeccceee-ccccee
Confidence 56788899998 9999999999999999999999999999999998877643 233468999999999755 556788
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.+++|+...........
T Consensus 77 ~v~~~~~~~~~~~~~~~--------------------------------------------------------------- 93 (299)
T d1nr0a2 77 HLKVVPAGGSGVDSSKA--------------------------------------------------------------- 93 (299)
T ss_dssp EEEEECSSSSSSCTTSC---------------------------------------------------------------
T ss_pred eEEEeccCCcccccccc---------------------------------------------------------------
Confidence 99999876321100000
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1088)
.. ..+...+.++
T Consensus 94 --------------------------------------------------------------~~------~~~~~~~~~~ 105 (299)
T d1nr0a2 94 --------------------------------------------------------------VA------NKLSSQPLGL 105 (299)
T ss_dssp --------------------------------------------------------------CE------EECSSCEEEE
T ss_pred --------------------------------------------------------------cc------cccccccccc
Confidence 00 0134556778
Q ss_pred EEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eeccccC
Q 001386 805 ALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSK 883 (1088)
Q Consensus 805 ~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~-~l~~h~~ 883 (1088)
+++|++++++++.++.+.+|+... ..... ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|..
T Consensus 106 ~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~ 180 (299)
T d1nr0a2 106 AVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180 (299)
T ss_dssp EECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSS
T ss_pred cccccccccccccccccccccccc--ccccc--cccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 888888888888888899998543 22222 345678999999 89999999999999999999887543 4456999
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 962 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~ 962 (1088)
.|++++|+|++++|++++.|+.|++||+.++... .......+|.. .|.+++|+|++++|++ +.|+.|++||+.+
T Consensus 181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~h~~---~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL--AHTNSWTFHTA---KVACVSWSPDNVRLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE--SCCCCCCCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred cccccccccccccccccccccccccccccccccc--ccccccccccc---ccccccccccccceEEEcCCCEEEEEECCC
Confidence 9999999999999999999999999999875422 12233344443 7999999999999999 5789999999998
Q ss_pred ceeeeee-ecCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 963 LTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 963 ~~~~~~~-~~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
+...... ...| ...+.++ +++++++|++++.||+|++||++
T Consensus 256 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 256 PSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEECC
T ss_pred CCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEecc
Confidence 7654332 2233 4556665 55678899999999999999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-31 Score=289.82 Aligned_cols=320 Identities=20% Similarity=0.292 Sum_probs=250.8
Q ss_pred ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEE
Q 001386 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512 (1088)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 512 (1088)
....++||.+.|.+ +++++|+ +|+||+.||+|+|||+.++++++++.+|...|.++++.+ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 34478999999865 4666788 899999999999999999999999999999999999853 3899999999999
Q ss_pred EEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE
Q 001386 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1088)
+|+................+...... ...++.+.. +..+.+|+..+++....+.... .. .....+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~ 149 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AA--VRCVQYDGRR 149 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SC--EEEEEECSSC
T ss_pred ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---cc--ceeeccccce
Confidence 99998877776666666555544433 345555543 5569999999998887776654 22 2334556678
Q ss_pred EEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeee
Q 001386 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1088)
+++++.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+..++.+....
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~----------- 214 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT----------- 214 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-----------
T ss_pred eeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-----------
Confidence 9999999999999999999888887653 3566777889999999999999999987553322111
Q ss_pred cCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEe
Q 001386 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 752 (1088)
Q Consensus 673 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 752 (1088)
T Consensus 215 -------------------------------------------------------------------------------- 214 (342)
T d2ovrb2 215 -------------------------------------------------------------------------------- 214 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCcee
Q 001386 753 ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 831 (1088)
Q Consensus 753 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~ 831 (1088)
.|...+.+++++ ++++++++ |+.|++||+...+.
T Consensus 215 -------------------------------------------~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~ 249 (342)
T d2ovrb2 215 -------------------------------------------GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC 249 (342)
T ss_dssp -------------------------------------------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred -------------------------------------------ccccceeEEecC--CCEEEEEcCCCEEEEEecccccc
Confidence 134445555443 45777776 78888888888777
Q ss_pred EEEecC---CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-----cccCCeeEEEECCCCCEEEEEeCC
Q 001386 832 ILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVSSGGD 903 (1088)
Q Consensus 832 ~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~-----~h~~~V~~l~~s~dg~~las~s~D 903 (1088)
...+.. |...+.++++++ +++++|+.||.|++||+++++++..+. +|.+.|++++|+|++.+||+|+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~d 326 (342)
T d2ovrb2 250 LQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326 (342)
T ss_dssp EEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred cccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 777664 445677777754 699999999999999999999887763 588899999999999999999999
Q ss_pred Cc----EEEEEcCC
Q 001386 904 AQ----IFVWDVDG 913 (1088)
Q Consensus 904 g~----i~iwd~~~ 913 (1088)
|+ |++||++.
T Consensus 327 Gt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 327 GTEETKLLVLDFDV 340 (342)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCeeEEEEEeCCC
Confidence 86 99999975
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.9e-30 Score=281.41 Aligned_cols=290 Identities=12% Similarity=0.174 Sum_probs=225.1
Q ss_pred CceeeeecCCCCeEEEEEcc-cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC-CCCeEEEEECC--CCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~l~~s~--dg~~l 411 (1088)
.+++++|+|+|+. +|+++. +..|+.|+......... ..+.+| ...|++++|+| +|.+|
T Consensus 19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l 80 (325)
T d1pgua1 19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL 80 (325)
T ss_dssp CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCEE
Confidence 5689999999995 555543 33456666544332211 115566 57899999998 67899
Q ss_pred EEEeCCCEEEEEEccCCCcccce-----eEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
|+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|++++++++..+.+|..
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 160 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence 99999999999999877654322 2345788999999999999953333445678899999999999999999999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe---cCCCCceEEEEEccC-CCEEEEEeeCCCCceeEEEEeC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
.|.+++|++.. ..++++++.||.+++||+...+..... ..+...|.+++|+|+ +.++++++. ++.|++||.
T Consensus 161 ~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~ 235 (325)
T d1pgua1 161 RINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG 235 (325)
T ss_dssp CEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred ccccccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence 99999997643 246788999999999999876655543 345567999999997 577888875 455999999
Q ss_pred CCCceeEEEeccccccccEEEEEEe---CCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC-CCEEE
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA 638 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~ 638 (1088)
++++.+..+.+|. ..+..+.|+ |++++|++++.|+.|+|||+.+++++..+..+.+...+..+++.+. +.+|+
T Consensus 236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (325)
T d1pgua1 236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312 (325)
T ss_dssp TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred ccccccccccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence 9999999999877 455444443 7899999999999999999999999999987766544555555543 34889
Q ss_pred EEeCCCcEEEEeC
Q 001386 639 VIANENRIKILET 651 (1088)
Q Consensus 639 ~~~~dg~i~iwd~ 651 (1088)
+++.||.|++||+
T Consensus 313 s~s~dg~i~vwdl 325 (325)
T d1pgua1 313 SLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTSCEEEEET
T ss_pred EEECCCEEEEEEC
Confidence 9999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.4e-29 Score=274.01 Aligned_cols=287 Identities=13% Similarity=0.145 Sum_probs=217.7
Q ss_pred ccEEEEEEecCCceEEEecccc-ceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCC-CCCeeEEEEec--CC
Q 001386 735 NKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK--ND 810 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~--dg 810 (1088)
..+.+++|+|+|+.++.++.+. .++.|+...... ..... +. +| ...|++++|+| ++
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~----------------~~~~~--~~--gh~~~~v~~v~fsP~~~g 77 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV----------------PPVVQ--FT--GHGSSVVTTVKFSPIKGS 77 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS----------------CSEEE--EC--TTTTSCEEEEEECSSTTC
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc----------------cceEE--Ee--CCCCCCEEEEEEeeCCCC
Confidence 3457889999999988775543 344444221111 11111 21 24 56899999998 67
Q ss_pred CEEEEEe-CCcEEEEEcCCcee--------EEEecCCCCCeEEEEEcCCCCcEEEEEeC--CCeEEEEEcCCceeeeeec
Q 001386 811 AYLFSAS-GGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 811 ~~l~~~~-dg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~i~lwd~~~~~~~~~l~ 879 (1088)
++|++++ ||+|+|||+..++. ...+..|.+.|.+++|++ +++++++++. ++.+++|+..+++.+..+.
T Consensus 78 ~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (325)
T d1pgua1 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVS 156 (325)
T ss_dssp CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECC
T ss_pred CEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeee
Confidence 8999998 89999999875432 233556888999999999 7888887664 6789999999999999999
Q ss_pred cccCCeeEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC-CCEEEE-EeCCeEE
Q 001386 880 GHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLA 956 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~-las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d-g~~l~~-~~d~~i~ 956 (1088)
+|...|.+++|+|++.+ +++++.|+.+++||+...+... ......++. ..|.+++|+|| +.++++ +.|+.|+
T Consensus 157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~~i~ 231 (325)
T d1pgua1 157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDRKIS 231 (325)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred ecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccccee
Confidence 99999999999999875 7789999999999998754322 223333333 37999999997 577887 5789999
Q ss_pred EEEcCcceeeeeeecCCCcCEEEEEEe---eCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEE
Q 001386 957 IYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1033 (1088)
Q Consensus 957 vwd~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
+||+.+++++..+ .+|...+..+.|+ +||++|++++.|++|+|||+.+++++..+..... ......+++.
T Consensus 232 iwd~~~~~~~~~l-~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~ 304 (325)
T d1pgua1 232 CFDGKSGEFLKYI-EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------QLGNQQVGVV 304 (325)
T ss_dssp EEETTTCCEEEEC-CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------CGGGCEEEEE
T ss_pred eeeeccccccccc-cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC------cccCeEEEEE
Confidence 9999999998874 4777777766666 6899999999999999999999999887763221 1112334555
Q ss_pred ECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1034 AHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1034 ~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
+.+ +..|++++.||+|++|||
T Consensus 305 ~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 305 ATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEE--TTEEEEEETTSCEEEEET
T ss_pred ECC--CCEEEEEECCCEEEEEEC
Confidence 554 468999999999999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1.6e-27 Score=268.92 Aligned_cols=368 Identities=11% Similarity=0.042 Sum_probs=264.6
Q ss_pred eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001386 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 348 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~ 427 (1088)
.++++.+.||+|.|||..+++.+.. +..| ..+..++|||||+++++++.|++|++||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 3578999999999999999999876 3334 4699999999999999999999999999998
Q ss_pred CCcc--cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEE
Q 001386 428 GSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1088)
Q Consensus 428 ~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 505 (1088)
++.. ..+....+|.+.+.+.+|+|||++ ++++++.+++|++||..+++++..+..|...+....+.+.
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~--------- 162 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE--------- 162 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------
Confidence 7643 222233467777788889999995 4578889999999999999999988877654443333221
Q ss_pred ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEE
Q 001386 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1088)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1088)
.....+.++|+|..++.... ..+.|.+||..+++......... ...+..++
T Consensus 163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~ 213 (432)
T d1qksa2 163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGG 213 (432)
T ss_dssp ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEE
T ss_pred ------------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cCccccce
Confidence 23345678899988776653 25679999998877655444322 25688999
Q ss_pred EeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCC---CCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCccccc
Q 001386 586 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA 660 (1088)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1088)
|+|+|+++++++ .++.+.++|..+++.+..+..... ........+...+...++.. .++.+.+|.......
T Consensus 214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~---- 289 (432)
T d1qksa2 214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH---- 289 (432)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----
T ss_pred ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc----
Confidence 999999888876 456799999999988887764321 11122333333343443333 256677776543210
Q ss_pred ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEE
Q 001386 661 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 740 (1088)
Q Consensus 661 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 740 (1088)
..+...+...
T Consensus 290 ----------------------------------------------------------------------~~~~~~v~~~ 299 (432)
T d1qksa2 290 ----------------------------------------------------------------------PDNAWKILDS 299 (432)
T ss_dssp ----------------------------------------------------------------------TTTBTSEEEE
T ss_pred ----------------------------------------------------------------------cccccEEEEE
Confidence 0144567778
Q ss_pred EEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CC
Q 001386 741 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG 819 (1088)
Q Consensus 741 ~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg 819 (1088)
.+++++..+++++.++..++|...... .+......+++ ||++.+++++ |+
T Consensus 300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~----------------------------~~~~~~~sv~v-pDg~~la~~s~d~ 350 (432)
T d1qksa2 300 FPALGGGSLFIKTHPNSQYLYVDATLN----------------------------PEAEISGSVAV-FDIKAMTGDGSDP 350 (432)
T ss_dssp EECSCSCCCCEECCTTCSEEEEECTTC----------------------------SSHHHHTCEEE-EEGGGCCCSSSCC
T ss_pred EEcCCCCeEEEEecCCccceeecccCC----------------------------CCCCeeeEEEE-EechhhcccccCC
Confidence 888888888888888888888643211 12223344555 8999999998 88
Q ss_pred cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe-----CCCeEEEEEcCCceeeeeeccc
Q 001386 820 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH 881 (1088)
Q Consensus 820 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~-----~dg~i~lwd~~~~~~~~~l~~h 881 (1088)
.+++|++.++.. +..|...+.+++||| ||++++++. .+|.|.|||..++++...+++.
T Consensus 351 ~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 351 EFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 999999866533 335677899999999 788775553 4689999999999998888754
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.2e-27 Score=252.59 Aligned_cols=269 Identities=11% Similarity=0.132 Sum_probs=212.7
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..+++|+||.++|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence 46789999999999999997 799999999999998765 3359999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
++++ .+++++.|+++++|++...+ ....+..+++++++. .+++ +.++.+.+|+..+++.+..+..+
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEECS
T ss_pred cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEE-eecccceeeeccceeeeeecccc
Confidence 9765 57889999999999986532 234577889999887 4554 45677899999999988887643
Q ss_pred CccEEEEeeeeeCCceEEEEEecC-CeEEEEECCCCCceEEec-CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
..+.++.. ++..+++++.+ +.+++|++.......... .+...+.+++|+|++.+|++++. ++.|++||.
T Consensus 121 -~~~~~~~~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~ 191 (287)
T d1pgua2 121 -SPGSAVSL----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL 191 (287)
T ss_dssp -SCEEEEEE----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred -ceeeeeec----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence 44444433 34566666666 579999987666555444 35668999999999999999976 445999999
Q ss_pred CCCceeEE-EeccccccccEEEEEEeCC----------CCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEE
Q 001386 563 SEGAIKRT-YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 563 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
.++..... +.+|. ..|.+++|+|. +.++++|+.|++|++||+.+ ++.+..+..|. ..|.+++|
T Consensus 192 ~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~ 266 (287)
T d1pgua2 192 QSREVKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVNNLLW 266 (287)
T ss_dssp TTTEEEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST--TCEEEEEE
T ss_pred cccccccccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC--CCeEEEEE
Confidence 98876543 45555 88999999874 46899999999999999977 45555555553 46999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeC
Q 001386 631 NKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
+|++ .+++++.|+.|++|++
T Consensus 267 ~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 267 ETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EETT-EEEEEETTSCEEEEEE
T ss_pred CCCC-EEEEEECCCeEEEEEE
Confidence 9986 5889999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5e-26 Score=243.52 Aligned_cols=274 Identities=21% Similarity=0.303 Sum_probs=219.8
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
++...+|+..|+|++| ||+ +||+|+.||+|+|||+.+++++.+ +.+|.+.|.+++|
T Consensus 8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~-- 63 (293)
T d1p22a2 8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY-- 63 (293)
T ss_dssp EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--
T ss_pred EeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--
Confidence 3455688889998765 788 699999999999999999998865 7889999999987
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---eEEecc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEG 483 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~---~~~~~~ 483 (1088)
++++|++|+.|+.|++|++..+.... ....+.... ..+.+... .++++..++.+.+||..+... ...+..
T Consensus 64 ~~~~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (293)
T d1p22a2 64 DERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAV--LHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVG 136 (293)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEE---EECCCCSCE--EEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred ccceeecccccccccccccccccccc---ccccccccc--cccccccc--ceeecccccceeEeeccccccccccccccc
Confidence 67899999999999999999886543 233333332 33444555 688999999999999887654 345677
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|...+..+.+. ...+++++.|+.|++||+++.+....+..+...+..+.++ +..+++++. ++.|++||+.
T Consensus 137 ~~~~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~ 206 (293)
T d1p22a2 137 HRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIE 206 (293)
T ss_dssp CSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETT
T ss_pred cccccccceec----ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecc
Confidence 88888877663 2478899999999999999999888888888888777664 568888875 4569999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC---------CeeeEEEeCCCCCCCCceEEEecCC
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
++..+..+.++. ..+.. +.+++.++++++.||.|++||+.. ...+..+..|.. .|.+++|+ +
T Consensus 207 ~~~~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~d--~ 277 (293)
T d1p22a2 207 CGACLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFD--E 277 (293)
T ss_dssp TCCEEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEEC--S
T ss_pred cceeeeeecccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEEc--C
Confidence 999999988877 56654 567889999999999999999753 345667766644 68899884 6
Q ss_pred CEEEEEeCCCcEEEEe
Q 001386 635 TLLAVIANENRIKILE 650 (1088)
Q Consensus 635 ~~l~~~~~dg~i~iwd 650 (1088)
++|++++.||+|++||
T Consensus 278 ~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 278 FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEEecCCEEEEeC
Confidence 7899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.4e-27 Score=260.17 Aligned_cols=296 Identities=9% Similarity=0.022 Sum_probs=215.9
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+++.+++|++.|++|+|||+|+ +||+|+.||+|+|||+.++....... ...+|.++|.+++|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f~ 65 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNFI 65 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEE----------------EecCCCCCEEEEEEe
Confidence 5678899999999999999999 79999999999999998876443211 133599999999999
Q ss_pred CC-CCEEEEEeCCCEEEEEEccCCCcccceeEeccC-CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE---
Q 001386 406 PD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--- 480 (1088)
Q Consensus 406 ~d-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~--- 480 (1088)
|+ +.+|++|+.|+.|++|++..+.... ....+ ........+.+++. .+++++.|+++++||++++.....
T Consensus 66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~ 140 (342)
T d1yfqa_ 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeeec
Confidence 86 5689999999999999999876544 23333 33444555666666 799999999999999876543322
Q ss_pred -eccCCcc--EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE---EecCCCCceEEEEEc-cCCCEEEEEeeCCCC
Q 001386 481 -FEGHGAP--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYS-ANGRRLFSCGTSKEG 553 (1088)
Q Consensus 481 -~~~~~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~ 553 (1088)
...+... .....+ ..++..+++++.||.|++||+....... ........+.+..+. .++..+++++.
T Consensus 141 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---- 214 (342)
T d1yfqa_ 141 NLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---- 214 (342)
T ss_dssp ESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----
T ss_pred ccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----
Confidence 2222222 222333 3355689999999999999998765432 233334445555554 46677777765
Q ss_pred ceeEEEEeCCCCce------eEEE------eccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 554 ESFLVEWNESEGAI------KRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~------~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
++.+.+|+...... ...+ ..+..+...+++++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus 215 dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~- 293 (342)
T d1yfqa_ 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN- 293 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-
T ss_pred CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-
Confidence 45588887654321 1111 1122334678999999999999999999999999999999988875432
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
....++|+|+++++++++.|+.+++|...
T Consensus 294 --~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 294 --EDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp --SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred --CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 35679999999999999999988887543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2e-26 Score=258.43 Aligned_cols=296 Identities=13% Similarity=0.086 Sum_probs=213.7
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE---
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV--- 402 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l--- 402 (1088)
.....++|.++|.++++++ + ++++|+.|++|+|||..+.+....... ......|...+..+
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 69 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDK-------------SYSHFVHKSGLHHVDVL 69 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGG-------------EEEEECCTTCEEEEEEE
T ss_pred eeecCCcccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccce-------------eEeeeeccCCceEeeeE
Confidence 3456689999999999976 4 588999999999999887653321000 00022244433322
Q ss_pred ---EECC-CCCEEEEEeCCCEEEEEEccCCCcccceeE-------eccCCCCEEEEEecCCCC---cEEEEEEeCCCcEE
Q 001386 403 ---VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLE-------IDAHVGNVNDLAFSAPCK---QISVITCGDDKTIK 468 (1088)
Q Consensus 403 ---~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~-------~~~h~~~v~~~~~s~d~~---~l~l~s~s~d~~i~ 468 (1088)
..+. ++.++++++.||.|++|++..+........ ...+...+..++|.+++. ..++++++.||+++
T Consensus 70 ~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 149 (393)
T d1sq9a_ 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY 149 (393)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred eeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEE
Confidence 2222 346788999999999999886654332211 123455788888887642 11789999999999
Q ss_pred EEeCCCCce------------------eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-----
Q 001386 469 VWDAVTGSR------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----- 525 (1088)
Q Consensus 469 vwd~~~~~~------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----- 525 (1088)
+||+..... ......+...+.+++|+ +++ +|++|+.||+|++||+.+.+....+
T Consensus 150 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s--~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~ 226 (393)
T d1sq9a_ 150 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIATGFNNGTVQISELSTLRPLYNFESQHS 226 (393)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEEC--CCC-EEEEEeCCCcEEEEeecccccccccccccc
Confidence 999753210 11112345667888885 454 8999999999999999988765543
Q ss_pred -cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc----------ccccccEEEEEEeCCCCEEE
Q 001386 526 -DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----------QLQHNSVSVVHFDTAKDQIL 594 (1088)
Q Consensus 526 -~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~ 594 (1088)
..|...|.+++|+|+|++|++++.++. .+.|++||+.+++.+..+... ..|...|++++|+|++++|+
T Consensus 227 l~~h~~~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~ 305 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305 (393)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred cccccceEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence 456779999999999999999987543 467999999999988877521 12338999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeeEEEeCCCCCC--CCceEEEecCCCEEEEEe
Q 001386 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~~ 641 (1088)
+++.|++|++||+.+++++.++..|...- ....++|+|++..+++++
T Consensus 306 S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred EECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 99999999999999999999998775421 123588999998876443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=8.6e-26 Score=255.85 Aligned_cols=369 Identities=9% Similarity=0.024 Sum_probs=248.4
Q ss_pred CceeeeecCCCCe-EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 336 SPMSMDFHPVQHT-LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~-lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
......+++|.+. ++++.+.||+|+|||+.+++.+.+ +..| ..+..++|||||++|+++
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~ 79 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVI 79 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEE
T ss_pred CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEE
Confidence 3334456666543 457788899999999999998876 4444 469999999999999999
Q ss_pred eCCCEEEEEEccCCCccc--ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 415 YSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
+.|++|++||+.+++... .+....+|...+.+++|+|||++ +++++..++.+++||..++.++..+.+|...+....
T Consensus 80 ~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 158 (426)
T d1hzua2 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 158 (426)
T ss_dssp ETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred eCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCcccee
Confidence 999999999999987533 22233467777888899999995 356667899999999999999998888877666555
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE-EE
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TY 571 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~ 571 (1088)
+.+.+. ... +.+++++..++.... +.+.+.+++...+.... ..
T Consensus 159 ~~~~~~-~~~--------------------------------i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~ 202 (426)
T d1hzua2 159 YHPEPR-VAA--------------------------------IIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS 202 (426)
T ss_dssp EESCCC-EEE--------------------------------EEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEE
T ss_pred ecCCCc-eeE--------------------------------EEECCCCCEEEEecC---CCCeEEEEEeccccceeeEE
Confidence 543321 122 334444544444332 13335555555443322 22
Q ss_pred eccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE---EEeCCCcEE
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA---VIANENRIK 647 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~---~~~~dg~i~ 647 (1088)
..+. ..+..+.|+|++++++++. .+..+.+++..+++.+................+...+...+ ....++.+.
T Consensus 203 ~~~~---~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 279 (426)
T d1hzua2 203 IGAA---PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS 279 (426)
T ss_dssp EECC---SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEE
T ss_pred eccC---CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEE
Confidence 2333 6788999999999988876 56678999999999988887654433344444444332111 122344454
Q ss_pred EEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeee
Q 001386 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 727 (1088)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 727 (1088)
+|+.....
T Consensus 280 ~~~~~~~~------------------------------------------------------------------------ 287 (426)
T d1hzua2 280 LIGTDPKN------------------------------------------------------------------------ 287 (426)
T ss_dssp EEECCTTT------------------------------------------------------------------------
T ss_pred Eeeccccc------------------------------------------------------------------------
Confidence 44433210
Q ss_pred cCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe
Q 001386 728 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 807 (1088)
Q Consensus 728 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1088)
|....+..... +. +|...+..++|+
T Consensus 288 ---------------------------------------------------~~~~~~~~~~~--l~--g~~~~v~~v~~s 312 (426)
T d1hzua2 288 ---------------------------------------------------HPQYAWKKVAE--LQ--GQGGGSLFIKTH 312 (426)
T ss_dssp ---------------------------------------------------CTTTBTSEEEE--EE--CSSSCCCCEECC
T ss_pred ---------------------------------------------------cccccceEeEE--Ee--cCCCceeEEEcC
Confidence 00000111111 11 266777888899
Q ss_pred cCCCEEEEE-------e-CCcEEEEEcCCceeEEEe---------cCCCCCeEEEEEcCCCCcEEEE-E----eCCCeEE
Q 001386 808 KNDAYLFSA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIAI-G----MDDSTIL 865 (1088)
Q Consensus 808 ~dg~~l~~~-------~-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~sp~d~~~las-g----~~dg~i~ 865 (1088)
||+++|++. + +++|+|||+.+++...++ ..+...+.+++||| ||++++. + +.+|.|+
T Consensus 313 Pdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~ 391 (426)
T d1hzua2 313 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALV 391 (426)
T ss_dssp TTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEE
T ss_pred CCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEE
Confidence 999988853 2 678999999998876554 24566799999999 7876643 2 3678999
Q ss_pred EEEcCCceeeeeeccccCCeeEEEECCCCCEEE
Q 001386 866 IYNARSSEVISKLEGHSKRVTGLVFSDALNILV 898 (1088)
Q Consensus 866 lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~la 898 (1088)
|||..++++...+.++. .++|+|++-+
T Consensus 392 v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 392 VVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 99999999999988775 3467777643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.4e-26 Score=242.33 Aligned_cols=270 Identities=11% Similarity=0.097 Sum_probs=216.7
Q ss_pred CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccc
Q 001386 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1088)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 734 (1088)
++++++.+|...|++++++| +++|+.|++|++|+..... ..|.
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~--------------------------l~sgs~Dg~v~~Wd~~~~~-----------~~h~ 46 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP--------------------------LISGSYDGRIMEWSSSSMH-----------QDHS 46 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT--------------------------TEEEETTSCEEETTTTEEE-----------CCCC
T ss_pred ceeEEECCCCCceEEEEECc--------------------------EEEEeCCCeEEEEECCCCC-----------CCCC
Confidence 56778899999999999872 7899999999999976321 2488
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
..|.++++++++ .+++++.|+.+++|++.... ....+.++++++++..++
T Consensus 47 ~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 96 (287)
T d1pgua2 47 NLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-----------------------------FGSQPKVASANNDGFTAV 96 (287)
T ss_dssp SCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-----------------------------CSSCEEEEEECSSSEEEE
T ss_pred CCEEEEEecCCC-eEEEEeeccccccccccccc-----------------------------cccceeeeeeccCCceEE
Confidence 899999998765 57899999999999754321 344577899999999999
Q ss_pred EEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeec-cccCCeeEEEECC
Q 001386 815 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLE-GHSKRVTGLVFSD 892 (1088)
Q Consensus 815 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~i~lwd~~~~~~~~~l~-~h~~~V~~l~~s~ 892 (1088)
++.++.+.+|+..+++.+..+..+ ..+ .++++ ++..+++++.++ .|++|++...+....+. .|.+.|++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 172 (287)
T d1pgua2 97 LTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172 (287)
T ss_dssp EETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT
T ss_pred Eeecccceeeeccceeeeeecccc-cee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEecc
Confidence 988999999999999988887743 333 45666 566777777665 79999998776655554 4888999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC----------CCEEEE-EeCCeEEEEEcC
Q 001386 893 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD----------QTRFLL-VHETHLAIYEAE 961 (1088)
Q Consensus 893 dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d----------g~~l~~-~~d~~i~vwd~~ 961 (1088)
++.+|++++.||.|++||+.+++.. .....+|.. .|.+++|+|+ +.++++ +.|++|++||+.
T Consensus 173 ~~~~l~~g~~dg~i~i~d~~~~~~~----~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 173 SETYIAAGDVMGKILLYDLQSREVK----TSRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEE----ECCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred Cccccccccccccccceeecccccc----ccccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 9999999999999999999986532 223344444 7999999875 467888 578999999998
Q ss_pred cceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 962 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 962 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
++........+|...|++++|+|++ .|++++.||+|++|++
T Consensus 246 ~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 246 RPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 7655555577999999999999986 5889999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-25 Score=251.69 Aligned_cols=270 Identities=11% Similarity=0.102 Sum_probs=200.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCccc---ceeEeccCCCCEEEEEe------cCCCCcEEEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAF------SAPCKQISVITCG 462 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~---~~~~~~~h~~~v~~~~~------s~d~~~l~l~s~s 462 (1088)
.++|.+.|.++++++ ++|++++.|++|+|||..+.+... .......|...+..+.. +.... .++++++
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 86 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATTS 86 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEEE
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEEe
Confidence 678999999999874 799999999999999987765321 12223345544433322 22111 2678999
Q ss_pred CCCcEEEEeCCCCceeEEe----------ccCCccEEEEeeeeeC---CceEEEEEecCCeEEEEECCCCCc--------
Q 001386 463 DDKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKE---NIHFIFSISVDGKIKAWLYDSLGA-------- 521 (1088)
Q Consensus 463 ~d~~i~vwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~-------- 521 (1088)
.||.|++|++..+.....+ ..+...+..+++.+.. .+.++++++.||.+++|++.....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 9999999997654332111 1234556677765543 257899999999999999753211
Q ss_pred ----------eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc---cccccEEEEEEeC
Q 001386 522 ----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDT 588 (1088)
Q Consensus 522 ----------~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 588 (1088)
......+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.... .|...|.+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred eccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEccccc
Confidence 01112334458899999998 7777764 6679999999998887665422 2448999999999
Q ss_pred CCCEEEEEeCCCc---EEEEEcCCCeeeEEEeCC-----------CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
++++|++|+.|++ |++||+++++.+..+... ++...|.+++|+|++++|++++.|++|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 9999999998874 899999999988887532 23456999999999999999999999999999999
Q ss_pred CcccccccccCccee
Q 001386 655 NSVDAAGVLSDNLRK 669 (1088)
Q Consensus 655 ~~~~~~~~~~~~v~~ 669 (1088)
+.+..+.+|.+.|..
T Consensus 322 ~~~~~l~gH~~~v~~ 336 (393)
T d1sq9a_ 322 ERITTLNMHCDDIEI 336 (393)
T ss_dssp EEEEEEECCGGGCSS
T ss_pred CEEEEECCcCCcccC
Confidence 999999999988753
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.7e-26 Score=253.30 Aligned_cols=263 Identities=10% Similarity=-0.017 Sum_probs=195.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
..+|...|++|+|+||+++||+|+.||+|+|||+.++..........+|..+|.+++|+|++.. ++++|+.|+.|++|+
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeeee
Confidence 6789999999999999999999999999999999987655544455579999999999998654 789999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe----cC--CCCceEEEEEccCCCEEE
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DA--PGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~--~~~~v~~~~~s~~g~~l~ 545 (1088)
+..+........+........+.. .+...+++++.|+.+++||++........ .. .......+.+.+++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 86 LIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred cccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence 999888777766655544333332 34568999999999999998654432211 11 122445677888999999
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE-eCCCCEEEEEeCCCcEEEEEcCCCeee------EEEe-
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQLL------TTID- 617 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~~------~~~~- 617 (1088)
+++. ++.|++||+..+...............+.+..+ ..++..+++++.||.+.+|+....... ..+.
T Consensus 165 ~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 165 VGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp EEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred eecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence 9876 556999999877654333322222244555554 456788999999999999998653221 1111
Q ss_pred ------CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 001386 618 ------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1088)
Q Consensus 618 ------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1088)
...+...+.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence 1122335779999999999999999999999999987655433
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8.1e-25 Score=233.95 Aligned_cols=271 Identities=16% Similarity=0.250 Sum_probs=218.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
..+|...|+|++| ||++||+|+.||+|+|||+.++++++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 5568889998765 79999999999999999999987665 78899999999987 566 799999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce---EEecCCCCceEEEEEccCCCEEEEEe
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+..+........+......... ....++++..++.+.+|+....... .....+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 9999988877766655554432 3457999999999999999876643 34455666776666544 4566665
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
. ++.+++||..+++.+..+.++. ..+..+.++ +.++++++.||.|++||+.+.+.+.....+.. ...
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~ 222 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR 222 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce----eee
Confidence 4 5679999999999999998887 677777665 57899999999999999999999988876543 234
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCC---------CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCC
Q 001386 629 CFNKNGTLLAVIANENRIKILETPES---------NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1088)
.+++++.+|++++.||.|++||+... ..+..+.+|.+.|.++++. +.
T Consensus 223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d------------------------~~ 278 (293)
T d1p22a2 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EF 278 (293)
T ss_dssp EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SS
T ss_pred eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc------------------------CC
Confidence 57788999999999999999997543 3345566788888777664 56
Q ss_pred cccccccCccceecc
Q 001386 700 PEISVEAENKSEVEK 714 (1088)
Q Consensus 700 ~l~~~~~d~~i~vw~ 714 (1088)
++++++.|++|++||
T Consensus 279 ~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 279 QIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEECCSSSEEEEEC
T ss_pred EEEEEecCCEEEEeC
Confidence 799999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=7.3e-27 Score=258.96 Aligned_cols=318 Identities=14% Similarity=0.076 Sum_probs=220.1
Q ss_pred eeeeecC-CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 001386 338 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 338 ~~v~~sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~ 416 (1088)
..-.||| ||+ ++|+++. |.|++||+.++..+. .+|...|.+++|||||++|++++.
T Consensus 6 ~~~~fSP~dG~-~~a~~~~-g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGD-LIAFVSR-GQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGG-CEEEEET-TEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEE
T ss_pred hcccccCCCCC-EEEEEEC-CeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEc
Confidence 3467999 999 5677654 899999998887653 258999999999999999998775
Q ss_pred CC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 417 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 417 dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
+. .|++||+++++.. .+..|...|.+++|+|||+ ++++++.++.+++|++.++++...+..|...+.+++|
T Consensus 63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI- 135 (360)
T ss_dssp TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE-
T ss_pred CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhh-
Confidence 54 7999999987643 4778999999999999999 8999999999999999999999999999999999998
Q ss_pred eeCCceEEEEEe----------cCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 495 AKENIHFIFSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 495 ~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
+++|++|+.+. .++.+++||+.+.+.. ....+...+..++|+|||++|++++. ++.+.+|+...
T Consensus 136 -spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~ 209 (360)
T d1k32a3 136 -SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV 209 (360)
T ss_dssp -CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred -ccceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence 45777888653 4456999999876543 44455667889999999999999875 44578898765
Q ss_pred Ccee-------EEEeccccccccEEEEEEeCCCCEEEEEeCCCc-----EEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 565 GAIK-------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 565 ~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
.... ..+..+. ..+..+.|++++..+.++..+.. +..++...+. ...+...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 273 (360)
T d1k32a3 210 LNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD-------------YRMIIPLE 273 (360)
T ss_dssp SCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC-------------EEEEEECS
T ss_pred cceeeccccceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCcCc-------------eeEeeecC
Confidence 4332 1222222 23333445555554443322211 1111111111 11111111
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
+.+..+..... .+.+.++++++.++.+++
T Consensus 274 -----------~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~i~~ 302 (360)
T d1k32a3 274 -----------SSILIYSVPVH----------------------------------------GEFAAYYQGAPEKGVLLK 302 (360)
T ss_dssp -----------SEEEEEECCCC----------------------------------------CSHHHHHHCCCCCEEEEE
T ss_pred -----------CCceEEEEEec----------------------------------------CCCeeEEEecCCCCEEEE
Confidence 11111111100 233445666667777777
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCC
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 768 (1088)
|++...+ .. .+...|..++|||||++|++++.||.|++|++..+..
T Consensus 303 ~d~~~~~---~~-------~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 303 YDVKTRK---VT-------EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp EETTTCC---EE-------EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred EECCCCe---EE-------EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence 7765322 11 1446789999999999999999999999999876544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=1.4e-25 Score=252.80 Aligned_cols=352 Identities=9% Similarity=0.048 Sum_probs=259.3
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee--EEEeCC-CCCCCCceEEE
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAG-GGLPENPRICF 630 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~-~~~~~v~~v~~ 630 (1088)
++.|.+||..+++.+..+..+. .+..++|+|||+++++++.|+.+++||+.+++.. ..+... .+...+.+.+|
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME 116 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence 6679999999999999998755 5899999999999999999999999999887643 333322 11112344566
Q ss_pred ecCCCEE-EEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcc
Q 001386 631 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1088)
Q Consensus 631 s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 709 (1088)
+|||++| ++++.++.+++||..+++.+.....+...+....+.
T Consensus 117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------ 160 (432)
T d1qksa2 117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------ 160 (432)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence 7899976 678889999999999988777666544433222222
Q ss_pred ceeccccccCCCcceeeecCCccccccEEEEEEecCCceEE-EeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 710 i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
+......+.++++|..++ +...++.+.+|+...... ..
T Consensus 161 -----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~------------------~~ 199 (432)
T d1qksa2 161 -----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN------------------LK 199 (432)
T ss_dssp -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE------------------EE
T ss_pred -----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc------------------ce
Confidence 334566788999998764 455678898888643221 11
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecC-----CCCCeEEEEEcCCCCcEEEEEe-C
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGM-D 860 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d~~~lasg~-~ 860 (1088)
...+ .+...+.+++|+|||+++++++ ++.+.++|..+++.+..+.. |........+.. .+...++.. .
T Consensus 200 ~~~i---~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg 275 (432)
T d1qksa2 200 TTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWATSHMG 275 (432)
T ss_dssp EEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEEEBSS
T ss_pred EEEE---cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecccccC
Confidence 1111 1455678999999999988887 57899999999988877642 334445555555 555555543 4
Q ss_pred CCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEE
Q 001386 861 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 940 (1088)
Q Consensus 861 dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 940 (1088)
++.|.+|+..... +..|...|....++|++..+++++.+.+.++|+..+.. .+.. ...++++
T Consensus 276 ~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~sv~v 337 (432)
T d1qksa2 276 DDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISGSVAV 337 (432)
T ss_dssp SSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHTCEEE
T ss_pred CceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eeeEEEE
Confidence 7899999876543 35678889999999999999999999999999876532 1111 1234555
Q ss_pred cCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe-----CCCcEEEEEcCCCceEEEec
Q 001386 941 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 941 s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s-----~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
||++.+++ +.|+.+++|++.++..+ ..|...|.+++|||||++|+++. .+|.|.|||..|+++...+.
T Consensus 338 -pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~ 411 (432)
T d1qksa2 338 -FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 411 (432)
T ss_dssp -EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred -EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEec
Confidence 99999999 57889999998776443 24667899999999999886554 46889999999999987775
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.5e-25 Score=248.14 Aligned_cols=195 Identities=13% Similarity=0.049 Sum_probs=161.4
Q ss_pred EEECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC--CcEEEEeCCCCcee
Q 001386 402 VVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRT 478 (1088)
Q Consensus 402 l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d--~~i~vwd~~~~~~~ 478 (1088)
-.||| ||+++|+++ +|.|++||+.++...+ + +|...|.+++|+|||+ .|++++.+ ..|++||+.+++..
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~~ 79 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKAE 79 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCEE
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----c-cCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcEE
Confidence 56999 999999986 5789999998876433 3 6999999999999999 55555444 37999999887654
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC------CC
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS------KE 552 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~ 552 (1088)
.+..|...|.+++| ++++++|++++.++.+++|++........+..+...+.+++|+|||++|+.+... +.
T Consensus 80 -~~~~~~~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 80 -KFEENLGNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp -ECCCCCCSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred -EeeCCCceEEeeee--cccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 67789999999999 5578899999999999999999999888888888899999999999999976542 23
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
.+..+++||..+++...... +. ..+..+.|+|+|++|++++.++.+.+|+.....
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~-~~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATT-EN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp CEEEEEEEETTTTEEEECSC-SS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred cccceeeeccccCceeeecc-cc---cccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 45679999999887654433 33 578889999999999999999999999876543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=8.4e-25 Score=247.66 Aligned_cols=362 Identities=8% Similarity=0.052 Sum_probs=244.1
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
.++.|.+.++..+. ..++.|.+||..+++.+.++..+. .+..++|+|||+++++++.|++|++||+.+++....
T Consensus 25 ~~~~d~~~~~~V~~--~~dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~ 98 (426)
T d1hzua2 25 LNDLDLPNLFSVTL--RDAGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 98 (426)
T ss_dssp CSCCCGGGEEEEEE--TTTTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred cccCCCCeEEEEEE--cCCCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE
Confidence 35566554433333 236779999999999999998765 589999999999999999999999999999876544
Q ss_pred Ee--CC-CCCCCCceEEEecCCCEEEEE-eCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeec
Q 001386 616 ID--AG-GGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1088)
Q Consensus 616 ~~--~~-~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 691 (1088)
.. .. .+...+.+++|+|||++++++ ..++.+++||..++........+...+....+.
T Consensus 99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~------------------ 160 (426)
T d1hzua2 99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH------------------ 160 (426)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE------------------
T ss_pred EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec------------------
Confidence 33 22 111223456677899987555 578999999999988777666655544333333
Q ss_pred CCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc-ccceEEEEccCCCCCC
Q 001386 692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTL 770 (1088)
Q Consensus 692 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~v~iw~~~~~~~~~ 770 (1088)
+......+++++++..++.... .+.+.+++.....
T Consensus 161 -----------------------------------------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~--- 196 (426)
T d1hzua2 161 -----------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID--- 196 (426)
T ss_dssp -----------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS---
T ss_pred -----------------------------------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc---
Confidence 2233445666777776655443 3444444432211
Q ss_pred CCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCC--CCeEEEE
Q 001386 771 STEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPS--PTATSLA 846 (1088)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~ 846 (1088)
....... .+...+..++++|++++++++. +..+.+++..+++.+....... .......
T Consensus 197 ---------------~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (426)
T d1hzua2 197 ---------------NLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 258 (426)
T ss_dssp ---------------SCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEE
T ss_pred ---------------ceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceee
Confidence 1111111 2567788999999999999886 5779999999999887765322 2223333
Q ss_pred EcCCCCcEE--EEEeCCCeEEEEEcCC-------ceeeeeeccccCCeeEEEECCCCCEEEE-------EeCCCcEEEEE
Q 001386 847 FNPHDNNVI--AIGMDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIFVWD 910 (1088)
Q Consensus 847 ~sp~d~~~l--asg~~dg~i~lwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~las-------~s~Dg~i~iwd 910 (1088)
+.+.....+ +..+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|+|||
T Consensus 259 ~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp EEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred eecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence 333122222 2334577888887654 4778899999999999999999999994 45688999999
Q ss_pred cCCCceeeeee-eecCCCCccCCCCeEEEEEcCCCCEEEEE------eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEe
Q 001386 911 VDGWGIQTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQATFS 983 (1088)
Q Consensus 911 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~fs~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs 983 (1088)
+.+++...... .....++......+.+++|||||++++++ .++.|+|||.+|++....+. ++. .++
T Consensus 339 ~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~-~~~------~~t 411 (426)
T d1hzua2 339 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK-DPR------LIT 411 (426)
T ss_dssp TTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC-CTT------CCS
T ss_pred CCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC-CCC------ccC
Confidence 99876432211 11111122222468999999999988653 35789999999999877643 332 446
Q ss_pred eCCCEEE
Q 001386 984 CDCRMVF 990 (1088)
Q Consensus 984 ~dg~~l~ 990 (1088)
|+|+|-+
T Consensus 412 p~Gk~~~ 418 (426)
T d1hzua2 412 PTGKFNV 418 (426)
T ss_dssp EEEEEEH
T ss_pred CCceEeE
Confidence 7887744
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=4.5e-21 Score=205.68 Aligned_cols=275 Identities=12% Similarity=0.103 Sum_probs=216.8
Q ss_pred eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE-EEeCCCEEEEEEcc
Q 001386 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH 426 (1088)
Q Consensus 348 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la-s~~~dg~i~vwd~~ 426 (1088)
++.++++.|++|.|||+.+++.+.+.+ ....+..++|+|||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEE--------------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 456678889999999999998876532 335678999999999885 56678999999999
Q ss_pred CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE-EEE
Q 001386 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI 505 (1088)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 505 (1088)
+++.+. .+..|. .+..++|++++.. +++++..++.+.+||..+++....+..+ .....+++++ ++..+ +++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeec--CCCeeeeee
Confidence 987665 455554 5789999999986 5667778889999999999988888755 4556677744 55554 566
Q ss_pred ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEE
Q 001386 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1088)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1088)
..++.+.+|+..+......+... ..+..++++|+++.++++..+ ...+.+|+....+......... .+..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 206 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEA----APSGIA 206 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS----EEEEEE
T ss_pred ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccc---ccccccccccceeeeecccccC----Ccceee
Confidence 67889999999988777766554 357789999999999888642 4568888888887777666544 577889
Q ss_pred EeCCCCEEEEEe---CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE-EEEeCCCcEEEEeCCCCCcccccc
Q 001386 586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 586 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
+++++..++.++ .++.|.+||..+++.+..+..+. .+..++|+|||++| ++++.++.|.+||+.+++.+.++.
T Consensus 207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999999887754 34689999999999998887643 36899999999976 566778999999999987776554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=2.7e-20 Score=199.53 Aligned_cols=269 Identities=14% Similarity=0.156 Sum_probs=204.9
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE-EEeCCCcEEEEeCCCCCcccccccccCcceeeee
Q 001386 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1088)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1088)
++++.|++|.+||+.+++.+.++..... ...++|+|||++|+ +++.++.|++||+.+++.+..+.
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~---p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~----------- 71 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP----------- 71 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCCC---ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-----------
Confidence 3567899999999999999999986533 57899999999875 56678899999988653322111
Q ss_pred cCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEe
Q 001386 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 752 (1088)
Q Consensus 673 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 752 (1088)
T Consensus 72 -------------------------------------------------------------------------------- 71 (301)
T d1l0qa2 72 -------------------------------------------------------------------------------- 71 (301)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCce
Q 001386 753 ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK 830 (1088)
Q Consensus 753 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~ 830 (1088)
....+..+++++++..++++. ++.+.+|+..+++
T Consensus 72 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (301)
T d1l0qa2 72 --------------------------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (301)
T ss_dssp --------------------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred --------------------------------------------ccccccccccccccccccccccccceeeecccccce
Confidence 111244577777777666654 5678999999998
Q ss_pred eEEEecCCCCCeEEEEEcCCCCcE-EEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCC-CcEEE
Q 001386 831 TILTIMPPSPTATSLAFNPHDNNV-IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFV 908 (1088)
Q Consensus 831 ~~~~~~~~~~~i~~l~~sp~d~~~-lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~D-g~i~i 908 (1088)
....+. +.....+++|+| ++.. ++++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +.+.+
T Consensus 108 ~~~~~~-~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (301)
T d1l0qa2 108 VAGTVK-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISV 184 (301)
T ss_dssp EEEEEE-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeecc-ccccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccccccc
Confidence 888877 445678899999 5555 456677889999999999988888755 447899999999998888765 56777
Q ss_pred EEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e---CCeEEEEEcCcceeeeeeecCCCcCEEEEEEee
Q 001386 909 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 984 (1088)
Q Consensus 909 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 984 (1088)
|+....+... ...... .+..++|++++..++++ . ++.|++||..+++.+..+.. ...+.+++|||
T Consensus 185 ~~~~~~~~~~-----~~~~~~----~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~sp 253 (301)
T d1l0qa2 185 IDTVTNSVID-----TVKVEA----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTP 253 (301)
T ss_dssp EETTTTEEEE-----EEECSS----EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECT
T ss_pred ccccceeeee-----cccccC----CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEEEEeC
Confidence 7777644221 111111 36789999999998773 3 35799999999998877543 45689999999
Q ss_pred CCCEE-EEEeCCCcEEEEEcCCCceEEEecc
Q 001386 985 DCRMV-FTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 985 dg~~l-~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
||++| ++++.|++|++||+.+++++..+..
T Consensus 254 dg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 254 DGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 99987 5667899999999999999988763
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=5.3e-21 Score=208.84 Aligned_cols=309 Identities=9% Similarity=0.040 Sum_probs=207.0
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
+|+++++.|++|+|||+.+++.++.+ ....+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 58999999999999999999876633 23345567889999999994 34677889999999999999988876554322
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC--------CCceeEEEE
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------EGESFLVEW 560 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------~~~~~i~iw 560 (1088)
... .+..++|+|++++++++.... ..+..+.+|
T Consensus 80 ~~~---------------------------------------~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (337)
T d1pbyb_ 80 RVK---------------------------------------SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp EEE---------------------------------------CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred ccc---------------------------------------ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence 111 111245566666655544211 124568899
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
|..+++....+.... .+..++|+|+|+++++++. .+.+||..+++....+..+.. .....++|++..+...
T Consensus 121 d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 191 (337)
T d1pbyb_ 121 DAETLSRRKAFEAPR----QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQ 191 (337)
T ss_dssp ETTTTEEEEEEECCS----SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCC
T ss_pred cccCCeEEEeccccC----CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeecc
Confidence 999999988887644 5778999999999999865 477899999998888876543 2334455555332222
Q ss_pred eCC-CcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 641 ANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 641 ~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
... +....+.... ..+.........++
T Consensus 192 ~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~----------- 219 (337)
T d1pbyb_ 192 HESSGVMATPFYTA-----------------------------------------RKDIDPADPTAYRT----------- 219 (337)
T ss_dssp CTTTTEEEEEEEEE-----------------------------------------BTTSCTTSGGGEEE-----------
T ss_pred ccccceeeeeeeee-----------------------------------------eeccceeeecccCc-----------
Confidence 111 1111111000 01111112222222
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
.+.+|+...+.. .... .. .+..
T Consensus 220 -------------------------------------~~~~~~~~~~~~------------------~~~~-~~--~~~~ 241 (337)
T d1pbyb_ 220 -------------------------------------GLLTMDLETGEM------------------AMRE-VR--IMDV 241 (337)
T ss_dssp -------------------------------------EEEEEETTTCCE------------------EEEE-EE--ECSS
T ss_pred -------------------------------------cEEEEEcCCCcE------------------EEEE-ec--CCCc
Confidence 233333221110 0000 00 1455
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
.+..+++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.||+|+|||..+++.+.+++
T Consensus 242 ~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 67778899999888755 5889999999999998886 566789999999 89999999999999999999999988876
Q ss_pred c
Q 001386 880 G 880 (1088)
Q Consensus 880 ~ 880 (1088)
-
T Consensus 319 ~ 319 (337)
T d1pbyb_ 319 L 319 (337)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=6.2e-21 Score=208.33 Aligned_cols=293 Identities=12% Similarity=0.070 Sum_probs=208.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE-EEeCCCcEEEEeCCCCCcccccccccCccee
Q 001386 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1088)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+.....+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence 579999999999999999999999998765545578999999999874 56678999999999887655443221100
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1088)
+...+..++|+|+++.+
T Consensus 80 ---------------------------------------------------------------~~~~~~~v~~s~dg~~l 96 (337)
T d1pbyb_ 80 ---------------------------------------------------------------RVKSLFGAALSPDGKTL 96 (337)
T ss_dssp ---------------------------------------------------------------EEECTTCEEECTTSSEE
T ss_pred ---------------------------------------------------------------cccceeeEEEcCCCcEE
Confidence 11223357788888877
Q ss_pred EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001386 750 FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF 829 (1088)
Q Consensus 750 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~ 829 (1088)
+++..+.....|. ....+..+.+||..++
T Consensus 97 ~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~d~~~~ 125 (337)
T d1pbyb_ 97 AIYESPVRLELTH---------------------------------------------------FEVQPTRVALYDAETL 125 (337)
T ss_dssp EEEEEEEEECSSC---------------------------------------------------EEECCCEEEEEETTTT
T ss_pred EEeecCCcceeee---------------------------------------------------ccccccceeeccccCC
Confidence 7766553332211 1122456778888888
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCC--------------
Q 001386 830 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-------------- 895 (1088)
Q Consensus 830 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-------------- 895 (1088)
+....+.. ...+..++|+| +++++++++.+ +.+||..+++....+..+... ....++|++.
T Consensus 126 ~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
T d1pbyb_ 126 SRRKAFEA-PRQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp EEEEEEEC-CSSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred eEEEeccc-cCCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeee
Confidence 88777763 45677888998 78888877544 677888888877766543321 1122222221
Q ss_pred ----------EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCccee
Q 001386 896 ----------ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 965 (1088)
Q Consensus 896 ----------~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~ 965 (1088)
.....+.++.+.+|++.++.......... . ..+..+++++++.+++.. ++.+++||+.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~ 272 (337)
T d1pbyb_ 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM----D---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNAS 272 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC----S---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEE
T ss_pred eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC----C---cceEEEEecccceEEEEc-cccEEEEECCCCcE
Confidence 11122234568899998876433222211 1 247789999999998765 58999999999999
Q ss_pred eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 966 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 966 ~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
+.... +...+.+++|||||++|++++.|+.|+|||+.+++.+.++..
T Consensus 273 ~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 273 IKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 98865 456788999999999999999999999999999999988864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=4.9e-21 Score=210.00 Aligned_cols=324 Identities=10% Similarity=0.005 Sum_probs=216.6
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
++|++++++|++++.+++|.+||+.+++.++ ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence 5789999999999999999999999997665 444 45667889999999995 457777899999999999998877
Q ss_pred eccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC--------C
Q 001386 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E 552 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------~ 552 (1088)
+.......... ..+..++|+|||++++++..+. .
T Consensus 78 ~~~~~~~~~~~--------------------------------------~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~ 119 (346)
T d1jmxb_ 78 ANLSSVPGEVG--------------------------------------RSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119 (346)
T ss_dssp EESCCSTTEEE--------------------------------------ECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ecccccccccC--------------------------------------CceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence 65332211100 0112356667777666554211 1
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
.+..+.+|+..+++....+..+.. ...+..+.+++++..+++ ++.+.+|++.+++.+..+..+.. ...+.++|
T Consensus 120 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 192 (346)
T d1jmxb_ 120 KPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAP 192 (346)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred CcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence 245688899888776554443321 134555667777665544 35689999999999888876543 45566778
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 633 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 633 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
++..+..... ++.+.+++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 213 (346)
T d1jmxb_ 193 DVLYFWPHQSPRHEFSMLYTI----------------------------------------------------------- 213 (346)
T ss_dssp BCCCCCCCCCTTCEEEEEEEE-----------------------------------------------------------
T ss_pred cccEEEEEecCCCceEeeeee-----------------------------------------------------------
Confidence 7765543332 3333333211
Q ss_pred eccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec
Q 001386 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND 791 (1088)
Q Consensus 712 vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1088)
..+......+.+...++.+.+|++..... .....
T Consensus 214 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 247 (346)
T d1jmxb_ 214 ----------------------------ARFKDDKQDPATADLLYGYLSVDLKTGKT------------------HTQEF 247 (346)
T ss_dssp ----------------------------EEC-------CCCEEEEEEEEEETTTCCE------------------EEEEE
T ss_pred ----------------------------eeeccCceeEeeccCCceEEEEECCCCce------------------EEEEe
Confidence 00111112222333334445554332211 11110
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 792 TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
. .+...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|++||+.+
T Consensus 248 ~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 248 A---DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp E---ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTT
T ss_pred e---cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECcc
Confidence 1 25667788899999999998888899999999999988886 456789999999 899999999999999999999
Q ss_pred ceeeeeeccccCC
Q 001386 872 SEVISKLEGHSKR 884 (1088)
Q Consensus 872 ~~~~~~l~~h~~~ 884 (1088)
++.+.+++.+.+.
T Consensus 323 ~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 323 LEKVKNIKLPGGD 335 (346)
T ss_dssp TEEEEEEECSSSC
T ss_pred CCEEEEEECCCCC
Confidence 9999888755443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=9.6e-22 Score=215.77 Aligned_cols=316 Identities=9% Similarity=-0.047 Sum_probs=217.2
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE-EEeCCCcEEEEeCCCCCccccccc
Q 001386 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
++|+++++++++++.+++|.+||+.+++.+.++..+... .+.+++|+|||++++ ++..++.|.+||+.+++....+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~-~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC-CcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 468899999999999999999999999999988754332 367999999999875 455789999999998866543332
Q ss_pred ccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEE
Q 001386 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1088)
Q Consensus 663 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 742 (1088)
..... .....+..++|
T Consensus 81 ~~~~~----------------------------------------------------------------~~~~~~~~v~~ 96 (346)
T d1jmxb_ 81 SSVPG----------------------------------------------------------------EVGRSMYSFAI 96 (346)
T ss_dssp CCSTT----------------------------------------------------------------EEEECSSCEEE
T ss_pred ccccc----------------------------------------------------------------ccCCceEEEEE
Confidence 11100 01112334677
Q ss_pred ecCCceEEEecc------------ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 743 NNGGQAIFALAS------------NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 743 s~~g~~l~~~~~------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
+|||++++++.. ++.+.+|+...... ...... ......+..+.+++++
T Consensus 97 s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~~~~--~~~~~~~~~~~~~~~~ 156 (346)
T d1jmxb_ 97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE------------------AKPVRT--FPMPRQVYLMRAADDG 156 (346)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG------------------BCCSEE--EECCSSCCCEEECTTS
T ss_pred ecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee------------------eeEEEe--eeccCceEEEEecCCC
Confidence 777777766553 34455555433221 111000 0123445567778888
Q ss_pred CEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcE-EEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEE
Q 001386 811 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV-IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 889 (1088)
Q Consensus 811 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~-lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~ 889 (1088)
.+++. ++.+.+|+..+++.+..+..+ .....+.++| ++.. ++.+..++.+.+++.. ..
T Consensus 157 ~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~ 215 (346)
T d1jmxb_ 157 SLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-----------------AR 215 (346)
T ss_dssp CEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE-----------------EE
T ss_pred EEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee-----------------ee
Confidence 76654 466899999999998888754 3456677888 4444 3444455555555421 12
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeee
Q 001386 890 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 969 (1088)
Q Consensus 890 ~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~ 969 (1088)
+.+....++++..++.+.+|++.++......... +. ..+..+.+++++.+++...++.+.+||..+++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~ 288 (346)
T d1jmxb_ 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA 288 (346)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEE
T ss_pred eccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEE
Confidence 2334455666777788999999986643322111 11 2478899999999999888889999999999998876
Q ss_pred ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 970 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 970 ~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
.. ...+.+++|||||++|++++.|+.|+|||+.+++.+.++..
T Consensus 289 ~~--~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 289 NL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp EC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred cC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence 54 45688999999999999999999999999999999988873
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=7.6e-18 Score=186.49 Aligned_cols=333 Identities=11% Similarity=0.019 Sum_probs=221.6
Q ss_pred cCCCCCeEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEE------
Q 001386 393 RDPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC------ 461 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~~las~~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~------ 461 (1088)
..+.+++.+++++|||+.+++.. ..+.|.+||..+++.+. ++..+..+ .++|+|||+ +++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCCc
Confidence 45788999999999999997752 34579999999998666 45555443 799999999 45544
Q ss_pred ----eCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEE
Q 001386 462 ----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1088)
Q Consensus 462 ----s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 537 (1088)
..++.|.+||+.+++.+..+..+......+... ...+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY-------------------------------------SWMNAN 132 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccC-------------------------------------CCcEEE
Confidence 346789999999999888877665544433221 113578
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeEEE
Q 001386 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTI 616 (1088)
Q Consensus 538 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~ 616 (1088)
+++++.++....+. ...+.+|+..+++...... ...++.++|+++.+ ++.+.|+.+.+|+...+......
T Consensus 133 s~dg~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 133 TPNNADLLFFQFAA--GPAVGLVVQGGSSDDQLLS-------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred EeCCCcEEEEEEcC--CCceEEeeccCCeEEEEec-------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence 88888877765432 4558889888776554433 35678899998766 56889999999999988877665
Q ss_pred eCCC----CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecC
Q 001386 617 DAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1088)
Q Consensus 617 ~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 692 (1088)
.... .........+++++. ++..+.++.+.+|+...+.......
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------- 251 (373)
T d2madh_ 204 VGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAP------------------------------- 251 (373)
T ss_pred eeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEe-------------------------------
Confidence 4321 111223445555554 4455677889998877553211100
Q ss_pred CCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCC
Q 001386 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1088)
Q Consensus 693 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~ 772 (1088)
|+. .........+.+.+...++.+.++...
T Consensus 252 --------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~------------- 281 (373)
T d2madh_ 252 --------------------IDA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI------------- 281 (373)
T ss_pred --------------------ecc-----------------ccCcEEeeeeccCcceeeEEecCCCeE-------------
Confidence 000 011111222222222222222222111
Q ss_pred CCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCC
Q 001386 773 EVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 851 (1088)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d 851 (1088)
..+..++..++... ++.+.+||..+++.+..+. +...+.+++|+| |
T Consensus 282 -------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-D 328 (373)
T d2madh_ 282 -------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-D 328 (373)
T ss_pred -------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC-C
Confidence 11222333444443 7889999999999998876 667789999999 7
Q ss_pred Cc--EEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCC
Q 001386 852 NN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 893 (1088)
Q Consensus 852 ~~--~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d 893 (1088)
|+ ++++++.|++|+|||+.+++.+..+.+|....+.|++.++
T Consensus 329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 329 GGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 76 4578999999999999999999999988887888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=1.1e-17 Score=185.25 Aligned_cols=306 Identities=12% Similarity=0.020 Sum_probs=212.6
Q ss_pred ccCCCCceeeeecCCCCeEEEEEc----ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGT----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~----~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
..+..++..+++||||++++++.. ..+.|.+||..+++.+.+ +..+.. ..++|||
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~Sp 75 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAH 75 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcC
Confidence 467779999999999998665532 346799999999998865 333333 3699999
Q ss_pred CCCEEEEEe----------CCCEEEEEEccCCCcccceeEeccCCCCE-------EEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 407 DGSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 407 dg~~las~~----------~dg~i~vwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
||++|++++ .++.|.+||..+++.+. .+..+.... ..+.|++|++.+++.....++.+.+
T Consensus 76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~ 152 (373)
T d2madh_ 76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL 152 (373)
T ss_pred CCCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence 999999875 35789999999997655 333443332 4578999999765666667788999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC------CCceEEEEEccCCCE
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRR 543 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~ 543 (1088)
|+..+++...... ...++.+++... ..+++.+.||.+.+|+............. ......+.+++++..
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T d2madh_ 153 VVQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI 227 (373)
T ss_pred eeccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence 9988877665443 344566654432 46678899999999999887765543321 112344566676666
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEe--ccc-------cccccEEEEEEeCCCCEEE----------EEeCCCcEEE
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQIL----------AAGDDHVIKI 604 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~----------~~s~dg~i~i 604 (1088)
++... ++.+.+|+..++....... ... ........+++++++..++ ....++.+.+
T Consensus 228 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 302 (373)
T d2madh_ 228 VWPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred EEecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence 65532 4457888877665432221 111 0012233455666665544 4456678999
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCE--EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeec
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 673 (1088)
||..+++.+..+.... .+..++|+|||+. +++++.|+.|++||+.+++.+..+..+......+++.
T Consensus 303 ~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 303 VTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred EECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence 9999999999886543 3688999999984 4678899999999999999999888776666666554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=8.3e-18 Score=184.74 Aligned_cols=330 Identities=12% Similarity=0.039 Sum_probs=198.5
Q ss_pred eEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEE--------EeCCC
Q 001386 399 VNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--------CGDDK 465 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s--------~s~d~ 465 (1088)
+...+.+|||+++++.. .+..|.+||..+++.+. ++..+.. ..++|||||+.+++++ ++.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 33446789999998763 45579999999997665 4444433 4799999999644332 34578
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
.|++||+.+++.+..+..+......+. .....++|+|+|++++
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~~~ 121 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGKTLL 121 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCCeeE
Confidence 899999999888776654432221110 1122467999999988
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccc----cccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCC
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++... ....+.+|+..+++.+..+...... ......+.+++++..++... .++.+.+++...... .
T Consensus 122 v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~ 192 (355)
T d2bbkh_ 122 FYQFS--PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------E 192 (355)
T ss_dssp EEECS--SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------T
T ss_pred EecCC--CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------e
Confidence 87543 3556899999999988877654300 01112234444444443322 223333333322211 1
Q ss_pred CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccc--cccCcceeeeecCCCcceeccccCCceeecCCCCCCC
Q 001386 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 698 (1088)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1088)
....+....+.+++..++.++.++.+++|+...+....... .+........+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 246 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-------------------------- 246 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE--------------------------
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee--------------------------
Confidence 22235567888889999999999999999988653321100 00000000000
Q ss_pred CcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcc
Q 001386 699 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRL 778 (1088)
Q Consensus 699 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 778 (1088)
.......+++++++..++....++...
T Consensus 247 ----------------------------------~p~~~~~~~~~~d~~~~~~~~~~~~~~------------------- 273 (355)
T d2bbkh_ 247 ----------------------------------RPGGWQQVAYHRALDRIYLLVDQRDEW------------------- 273 (355)
T ss_dssp ----------------------------------EECSSSCEEEETTTTEEEEEEEECCTT-------------------
T ss_pred ----------------------------------eccceEEEEEeCCCCeEEEEeccCCce-------------------
Confidence 000011133344443333222211000
Q ss_pred cCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc--EEE
Q 001386 779 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIA 856 (1088)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~la 856 (1088)
......+.|.+||..+++.+..+. +...+.+++|+| ||+ +++
T Consensus 274 ----------------------------------~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v 317 (355)
T d2bbkh_ 274 ----------------------------------RHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYA 317 (355)
T ss_dssp ----------------------------------CTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEE
T ss_pred ----------------------------------eecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCeEEEE
Confidence 000012368999999999888876 345688999999 676 456
Q ss_pred EEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCC
Q 001386 857 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 857 sg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg 894 (1088)
++..|+.|+|||+++++.+..+.++......+.+.++|
T Consensus 318 ~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 318 LSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp EETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred EECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 77889999999999999999998876666667666553
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=1.4e-17 Score=183.00 Aligned_cols=298 Identities=14% Similarity=0.098 Sum_probs=199.8
Q ss_pred CceeeeecCCCCeEEEEE----cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
++...+.+|||++++++. ..+.+|.+||..+++.+.+ +..+ .+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence 455567899999765553 2356799999999988765 2223 23369999999999
Q ss_pred EEEe----------CCCEEEEEEccCCCcccceeEeccCC----CCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001386 412 GVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1088)
Q Consensus 412 as~~----------~dg~i~vwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~ 477 (1088)
++.+ .++.|++||+.+++.+..+.....+. .....++|+++++.++++..+.+..+.+||..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8753 47889999999998665432212221 233568999999965555556678899999999999
Q ss_pred eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec------CCCCceEEEEEccCCCEEEEEeeCC
Q 001386 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+..+..+...... +. .....+..+.||....+............ .+...+....+++++..++.++.
T Consensus 142 ~~~~~~~~~~~~~----~~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHIF----PT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEEE----EE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceEe----ec-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 8888755433211 11 11234555666666665554433322221 12223455678888888887754
Q ss_pred CCceeEEEEeCCCCceeEE--Eecccc-------ccccEEEEEEeCCCCEEEEEeCC----------CcEEEEEcCCCee
Q 001386 552 EGESFLVEWNESEGAIKRT--YQGLQL-------QHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQL 612 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~--~~~~~~-------~~~~v~~~~~~~~~~~l~~~s~d----------g~i~iwd~~~~~~ 612 (1088)
++.+++|+...++.... ...+.. .......+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 55699999987754321 221110 00123457889999988876543 3699999999999
Q ss_pred eEEEeCCCCCCCCceEEEecCCC--EEEEEeCCCcEEEEeCCCCCcccccccccCc
Q 001386 613 LTTIDAGGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSDN 666 (1088)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 666 (1088)
+..+.... .+.+++|+|||+ +++++..|+.|++||..+++.+..+..+...
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~ 345 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence 88887543 368899999997 4566777999999999999988877655443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4e-16 Score=169.25 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=111.7
Q ss_pred EEEEEecCCeEEEEECCCCCceE--EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccc
Q 001386 501 FIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578 (1088)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 578 (1088)
.+++++.|++|++|+++...... ....+...+..++|+|||++|++++. .++.|.+|++........+..+....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence 45778899999999998665433 33356678899999999999987663 35679999988765544444433233
Q ss_pred ccEEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC-CCcEEEEeCCCC
Q 001386 579 NSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPES 654 (1088)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~ 654 (1088)
..+..++|+|||+++++++. ++.+.+|+..............+...+.++.++|+++++++++. +..+.+|+....
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence 56778999999999999874 77899999887776655554344445788999999998887775 456788876543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=3.3e-16 Score=169.95 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=186.8
Q ss_pred eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEEcc
Q 001386 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH 426 (1088)
Q Consensus 348 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~-~dg~i~vwd~~ 426 (1088)
.++++++.|++|+||++++...+.... ...|.+.|..++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEE-----------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 356788899999999998654432211 224788999999999999996655 58999999998
Q ss_pred CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCCcEEEEeCCCCceeE--EeccCCccEEEEeeeeeCCceEEE
Q 001386 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIF 503 (1088)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~ 503 (1088)
.+...........+...+..++|+|||+ +|++++ .++.|.+|+........ ....+...+.++.+ ++++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~--s~d~~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANI--SPDNRTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEE--CTTSSEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEe--eecceeee
Confidence 7654433222334556678899999999 566655 57789999877765443 33446666777777 44666666
Q ss_pred EEe-cCCeEEEEECCCCCceEE------ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC--Cce--eEEEe
Q 001386 504 SIS-VDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI--KRTYQ 572 (1088)
Q Consensus 504 s~~-~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~~~ 572 (1088)
.++ .+..|.+|+......... ..........++|++++..++..... .....+|+... ... .....
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEeecccccceeeeeeee
Confidence 666 456799999876554331 22334466889999999998877542 23355555432 222 11221
Q ss_pred c---cccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeEEEeC-CCCCCCCceEEEecCCCEEEEEeC-CCcE
Q 001386 573 G---LQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIAN-ENRI 646 (1088)
Q Consensus 573 ~---~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~-dg~i 646 (1088)
. ..........+++++++++++.. ..++.+.+|++........... ......+..++|+|||++|++++. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 1 11122456778899999987765 4678899999876543332221 111124678999999998877754 6899
Q ss_pred EEEeCC
Q 001386 647 KILETP 652 (1088)
Q Consensus 647 ~iwd~~ 652 (1088)
.+|++.
T Consensus 301 ~v~~id 306 (333)
T d1ri6a_ 301 SVYEIV 306 (333)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999553
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.60 E-value=1.9e-13 Score=155.63 Aligned_cols=222 Identities=13% Similarity=0.082 Sum_probs=140.1
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC-
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS- 416 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~- 416 (1088)
..+.|.+|++ ++.. .|+.|.+||+.+++.... +....+..|...|.++.|||||++||+++.
T Consensus 20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECC
Confidence 4578999998 5554 468999999999986532 122235667889999999999999998853
Q ss_pred --------CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC---
Q 001386 417 --------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--- 485 (1088)
Q Consensus 417 --------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~--- 485 (1088)
++.+.+||+.+++.. .+..|...+..+.|||||+ .++.. .++.+.+|+..+++..+....+.
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred cceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence 467899999998643 4778899999999999999 45554 47789999999888765443221
Q ss_pred ---------------ccEEEEeeeeeCCceEEEEEecCCe-EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 486 ---------------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 486 ---------------~~v~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
+....+.| ++||+.|+....|.. +..|.+...... .........+.+...+..
T Consensus 156 ~~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------ 224 (470)
T d2bgra1 156 IYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------ 224 (470)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC------
T ss_pred ccccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc------
Confidence 11233445 668888888876644 544433211000 000111222222222211
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccc--------cccccEEEEEEeCCCCEEEEE
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILAA 596 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~ 596 (1088)
.....+.+|++.++........+. .....+..+.|.+++..++..
T Consensus 225 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 277 (470)
T d2bgra1 225 --NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (470)
T ss_dssp --CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred --CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence 123447888887765433222111 112346678888888765553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=1.9e-14 Score=158.04 Aligned_cols=292 Identities=11% Similarity=0.006 Sum_probs=194.0
Q ss_pred cCCCCceeeeecCCCCeEEE--EEcccCc--EEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLL--VGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla--~g~~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
.+.+....++.++|++...+ ....+++ |.+||..+++.+.. ..++... .++|+||
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spD 75 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHS 75 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTT
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCC
Confidence 44556777788999986333 3444454 66779999987764 2234333 5899999
Q ss_pred CCEEEEEe----------CCCEEEEEEccCCCcccceeEeccCC-------CCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 408 GSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 408 g~~las~~----------~dg~i~vwd~~~~~~~~~~~~~~~h~-------~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
|+.|++.+ .|+.|.+||..+++.+.. +..+. .....++|+|||++ ++++...++.+.+|
T Consensus 76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~ 151 (368)
T d1mdah_ 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGL 151 (368)
T ss_dssp SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEE
T ss_pred CCEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEE
Confidence 99999865 367799999999876553 22221 12346899999995 33444568999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe------cCCCCceEEEEEccCCCEE
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAPGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l 544 (1088)
|+.+++.+..+..+..... .+.. ...++..+.||.+.+|++......... ..+...+....+.+++..+
T Consensus 152 d~~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 152 SVPGASDDQLTKSASCFHI----HPGA-AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp EETTTEEEEEEECSSCCCC----EEEE-TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred ECCCCcEeEEeeccCcceE----ccCC-CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence 9999999988876554321 1222 246777888999999988765543322 2223344567788888776
Q ss_pred EEEeeCCCCceeEEEEeCCCCceeEEEe--cccc-------ccccEEEEEEeCCCCEEEEEeCC---------CcEEEEE
Q 001386 545 FSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQL-------QHNSVSVVHFDTAKDQILAAGDD---------HVIKIWD 606 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~~-------~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd 606 (1088)
.... +.+++++...+....... .... .......+++++++..++....+ ..|.+||
T Consensus 227 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D 300 (368)
T d1mdah_ 227 WAVA------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp ECBS------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred EecC------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence 6542 225666655544332221 1100 00122347789998887765422 3589999
Q ss_pred cCCCeeeEEEeCCCCCCCCceEEEecCCCE--EEEEeCCCcEEEEeCCCCCccccccc
Q 001386 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
..+++.+..+.... .+..++|+|||+. ++++..++.|++||..+++.+..+..
T Consensus 301 ~~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 301 ASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp SSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 99999888776442 3678999999973 45666789999999999988776653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=1.1e-13 Score=151.73 Aligned_cols=314 Identities=12% Similarity=-0.007 Sum_probs=194.3
Q ss_pred eEEEEEccCCCEEEEE-eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----------CCC
Q 001386 532 CTRMAYSANGRRLFSC-GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDH 600 (1088)
Q Consensus 532 v~~~~~s~~g~~l~~~-~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg 600 (1088)
...++..++++..... .....+...+++||..+++.+....++. . ..++|+|||+.+++.+ .|+
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---C--CcceECCCCCEEEEEcccCccccccccCC
Confidence 3344667888875433 2344556779999999999999888765 3 3578999999998864 367
Q ss_pred cEEEEEcCCCeeeEEEeCCCCC-----CCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCcccccccccCcceeeeecC
Q 001386 601 VIKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1088)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p 674 (1088)
.|.+||..+++.+..+..+... .....++|+|||++++++. .++.+.+||+.+++....+..+.... +.|
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~ 172 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHP 172 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEE
T ss_pred eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----Ecc
Confidence 8999999999999888654221 1235799999999998876 57999999999987766554432211 111
Q ss_pred CCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc
Q 001386 675 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1088)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 754 (1088)
. .....+..+.|+.+.+++..................+...+....+.+++..+.. .
T Consensus 173 ~---------------------~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~ 229 (368)
T d1mdah_ 173 G---------------------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--V 229 (368)
T ss_dssp E---------------------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--B
T ss_pred C---------------------CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--c
Confidence 0 1112233334444444443322211111111111123334445666677654443 3
Q ss_pred ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--C--------CcEEEE
Q 001386 755 NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GVISLY 824 (1088)
Q Consensus 755 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d--------g~i~iw 824 (1088)
++.+.++++..+.. .+++...+......... ........+++++++..+++.. + ..|.+|
T Consensus 230 ~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~ 299 (368)
T d1mdah_ 230 ASSILQGDIPAAGA--------TMKAAIDGNESGRKADN--FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp SSCCEEEECCSSCC--------EEECCCCSSCTHHHHTT--EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred CCCEEEEeecCCce--------EEEeecccccceeeeee--ecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEE
Confidence 45566666544322 22222222111110000 0112234588999998877653 1 249999
Q ss_pred EcCCceeEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEE
Q 001386 825 IVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 890 (1088)
Q Consensus 825 d~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~ 890 (1088)
|..+++.+..+. +...+.+++|+| |++ +++++..|+.|++||..+++.+..++.... -..|++
T Consensus 300 D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 300 TASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp ESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred ECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 999999888776 345788999999 665 456777899999999999999999875544 344544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=1.3e-12 Score=148.61 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=89.5
Q ss_pred EEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc-----CCccEEEEeeeeeCCceEEEEEec---------CCeE
Q 001386 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISV---------DGKI 511 (1088)
Q Consensus 446 ~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i 511 (1088)
.+.|.+|++ ++. ..|+.+.+||+.+++....+.. |...|.++.| ++||++|+.++. ++.+
T Consensus 21 ~~~W~~d~~--~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~--SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHE--YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSE--EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCE--EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEE--CCCCCEEEEEECCcceeeeccCceE
Confidence 578999998 554 3478899999999988765543 4567888888 568888888753 5678
Q ss_pred EEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe
Q 001386 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1088)
.+||+.+++ ...+..+...+..+.|||||+.+|... +..+++|+..+++..+...
T Consensus 95 ~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~~~~~~g~~~~~t~ 149 (470)
T d2bgra1 95 DIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITW 149 (470)
T ss_dssp EEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCS
T ss_pred EEEECCCCc-ccccccCCccccccccccCcceeeEee-----cccceEEECCCCceeeeee
Confidence 999999765 445667777899999999999999975 3459999999887765543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.53 E-value=4.2e-14 Score=152.37 Aligned_cols=297 Identities=10% Similarity=0.027 Sum_probs=188.8
Q ss_pred EEEEEecCCeEEEEECCCCCceEEecC------------------------------CCCceEEEEEccCCCEEEEEeeC
Q 001386 501 FIFSISVDGKIKAWLYDSLGARVDYDA------------------------------PGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
.+++++.+|.|++|++.+.+....+.. |........++|||++|++...
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~- 91 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK- 91 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET-
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC-
Confidence 467788899999999987776554322 1112334446799999988763
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCC--EEEEEeCCC-----------------cEEEEEcCCCe
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD--QILAAGDDH-----------------VIKIWDMNKVQ 611 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~s~dg-----------------~i~iwd~~~~~ 611 (1088)
.+..|.++|+.+++..+.+.-.. ...+..++|+|+++ +++..+++. .+..+|..+.+
T Consensus 92 --~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 92 --ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp --TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred --CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence 36679999999999888776433 36789999999998 444444332 24568888888
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc-EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceee
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 690 (1088)
....+..... ...++|+|+|+++++.+.+.. +..++..+.....
T Consensus 168 v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d-------------------------------- 212 (441)
T d1qnia2 168 VAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRD-------------------------------- 212 (441)
T ss_dssp EEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBC--------------------------------
T ss_pred eeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEE--------------------------------
Confidence 8877776543 578999999999988876532 1111111111110
Q ss_pred cCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCC
Q 001386 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 770 (1088)
Q Consensus 691 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~ 770 (1088)
.+.+.+ ....++++++|+++.. +.++.+.++.....
T Consensus 213 ------------------~i~v~n---------------------~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~---- 248 (441)
T d1qnia2 213 ------------------WVVVFN---------------------VERIAAAVKAGNFKTI-GDSKVPVVDGRGES---- 248 (441)
T ss_dssp ------------------EEEEEE---------------------HHHHHHHHHTTCCBCC-TTCCCCEEECSSSC----
T ss_pred ------------------EEEeCC---------------------ccceEEEecCCCEEEe-CCCCcEEEEcccCC----
Confidence 000000 0011234566665433 33444444432211
Q ss_pred CCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeE--------EEec---C
Q 001386 771 STEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTI--------LTIM---P 837 (1088)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~--------~~~~---~ 837 (1088)
..+.... -......+.++|||++++++. +++|.+||+.+.+.. ..+. .
T Consensus 249 --------------~v~~~IP-----vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~ 309 (441)
T d1qnia2 249 --------------EFTRYIP-----VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE 309 (441)
T ss_dssp --------------SSEEEEC-----CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB
T ss_pred --------------ceEEEEe-----CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc
Confidence 1122211 123356799999999988775 899999998753311 0111 1
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----------ceeeeee-----ccccCCeeEEEECCCCCEEEEEe
Q 001386 838 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SEVISKL-----EGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 838 ~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~----------~~~~~~l-----~~h~~~V~~l~~s~dg~~las~s 901 (1088)
..-.....+|++ ++..+.+...|.+|..|++.. ...+..+ .||...+.+.+++|||++|++++
T Consensus 310 ~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 310 LGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp CCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred cccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 112345568999 888999999999999999742 1233444 57888888899999999999994
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.50 E-value=2.5e-15 Score=162.04 Aligned_cols=358 Identities=10% Similarity=0.013 Sum_probs=217.1
Q ss_pred CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEE
Q 001386 345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424 (1088)
Q Consensus 345 dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd 424 (1088)
|+-+.+++|+.+|+|+||++.+++.+.+.. .|+|++... .|..+.+.+++.
T Consensus 9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~Ip----------------------------Vfspd~~~g-~g~~~es~~vl~ 59 (441)
T d1qnia2 9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIP----------------------------VFNVDSATG-WGITNESKEILG 59 (441)
T ss_dssp CSEEEEEECBTTCCEEEEEETTTEEEEEEC----------------------------SSSBCTTTC-TTTSHHHHHHHC
T ss_pred CCEEEEEeCCCCCcEEEEeCCCCcEEEEEE----------------------------eEcCCCCEE-EEECCccceEEe
Confidence 444567888899999999999998886521 277777542 222222222211
Q ss_pred ccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec-cCCccEEEEeeeeeCCceEEE
Q 001386 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIF 503 (1088)
Q Consensus 425 ~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~ 503 (1088)
++.... ....|.-......++|||++ ++++...+++|.++|++++++...+. .+...+..++|++.++-.+++
T Consensus 60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~ 133 (441)
T d1qnia2 60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF 133 (441)
T ss_dssp --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence 111111 12234455666778899995 45666788899999999999887765 356778889986655444666
Q ss_pred EEecCC-----------------eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 504 SISVDG-----------------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 504 s~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
..+.+. .+..+|..+......+... .....+.|+|+|+++++.+.+.+ .+..++..+..
T Consensus 134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse---~~~~id~~t~~ 209 (441)
T d1qnia2 134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSE---RAVDLAGTMRN 209 (441)
T ss_dssp EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTT---CCSSHHHHTCS
T ss_pred eccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCC---ceEEEeccCcc
Confidence 655443 2355777777666555443 34678999999999998875332 12233433333
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEE-EeCCCc
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENR 645 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~ 645 (1088)
....+.... ....+.+.|+|+++.. +.++.+.+++....+.+..+..... ...+.++|||+++++ +..+++
T Consensus 210 ~~d~i~v~n----~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~t 281 (441)
T d1qnia2 210 DRDWVVVFN----VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPT 281 (441)
T ss_dssp SBCEEEEEE----HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSB
T ss_pred eEEEEEeCC----ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCc
Confidence 332222111 1122346788887655 4567888888877778888776433 478999999998755 566899
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
+.+||+.... ..+....+...++...+
T Consensus 282 vsv~d~~k~~--~~~~~~~~~~~~~~~~~--------------------------------------------------- 308 (441)
T d1qnia2 282 VSVIAIDKLD--DLFEDKIELRDTIVAEP--------------------------------------------------- 308 (441)
T ss_dssp EEEEEGGGHH--HHTTTSSCGGGGEEECC---------------------------------------------------
T ss_pred EEEEEeehhh--hHhhccCCcceEEEeec---------------------------------------------------
Confidence 9999987422 11111111111111110
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceee-cc-CCCCCCCCeeE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVN-DT-TDSNSQEAVPC 803 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~ 803 (1088)
. ..-.....+|.++|..+.+...|..|..|++.... +.|.-.....+... +. -..+|...+.+
T Consensus 309 ----~--~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~---------~~~~~~~~~~v~~~~~v~y~~GH~~~~~~ 373 (441)
T d1qnia2 309 ----E--LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAI---------KHYNGDRVNYIRQKLDVQYQPGHNHASLT 373 (441)
T ss_dssp ----B--CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHH---------HHHTTCCCCCEEEEEECSSCEEEEEETTT
T ss_pred ----c--cccCcccceecCCceEEEcccccceEEEeccchhh---------hhhccCCCceeEeccccccCCCCCccccc
Confidence 0 01123445799999888888889999999975321 11111111111110 00 00146666777
Q ss_pred EEEecCCCEEEEEe
Q 001386 804 FALSKNDAYLFSAS 817 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~ 817 (1088)
.+++|||++|++++
T Consensus 374 ~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 374 ESRDADGKWLVVLS 387 (441)
T ss_dssp TSTTCCCCEEEEEE
T ss_pred cccCCCCcEEEecC
Confidence 78999999999995
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.28 E-value=6.8e-09 Score=111.87 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=102.7
Q ss_pred CCeeEEEEecCCCEEEEEe--CCcEEEEEcCCc-eeE--EEe--cCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEEcC
Q 001386 799 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTF-KTI--LTI--MPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNAR 870 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~-~~~--~~~--~~~~~~i~~l~~sp~d~~~las-g~~dg~i~lwd~~ 870 (1088)
..+.+++|+|||+++++++ .+.|.+|+.... ... ... .........++|+| +++++.+ ...+++|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence 3467899999999999887 456888876532 222 222 23456789999999 7776654 5567899999987
Q ss_pred Cceeee--e---ec--------------cccCCeeEEEECCCCCEEEEEeC-C-----CcEEEEEcCCCce-eeeeeeec
Q 001386 871 SSEVIS--K---LE--------------GHSKRVTGLVFSDALNILVSSGG-D-----AQIFVWDVDGWGI-QTCRSLQT 924 (1088)
Q Consensus 871 ~~~~~~--~---l~--------------~h~~~V~~l~~s~dg~~las~s~-D-----g~i~iwd~~~~~~-~~~~~~~~ 924 (1088)
.++... . +. .+......+.++|||++|+++.. + +.|..|++..... .....+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 654221 1 10 11223567899999999887642 2 2377777765321 11112111
Q ss_pred CCCCccCCCCeEEEEEcC-CCCEEEEE--eCCeEEEEEcCcc
Q 001386 925 PDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEEL 963 (1088)
Q Consensus 925 ~~~~~~~~~~v~~~~fs~-dg~~l~~~--~d~~i~vwd~~~~ 963 (1088)
... .......++|+| +|++|+++ .++.|.+|+++..
T Consensus 304 ~~~---~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPT---SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSS---CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEc---CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 111 012356799998 89998885 5688999987643
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.25 E-value=1.1e-09 Score=118.26 Aligned_cols=255 Identities=10% Similarity=0.108 Sum_probs=154.0
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEcCC-ceeEEEe-cCCCCCeEEEEEcCCCCcEE--EEEe-CCCeEEEEEcCC
Q 001386 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTI-MPPSPTATSLAFNPHDNNVI--AIGM-DDSTILIYNARS 871 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~i~~l~~sp~d~~~l--asg~-~dg~i~lwd~~~ 871 (1088)
....+.-++++|+++.|.++..+.+..|.+.. +...... .........+++++ +++.+ +++. ..++|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 34456679999999999998888888887763 2222221 12234456788888 67643 3322 235665554422
Q ss_pred -cee---------------eee-eccccCCeeEEEECCCCCEEEEEeC-CCcEEEEEcCCCc-eeeeeeeecCCCCccCC
Q 001386 872 -SEV---------------ISK-LEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG-IQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 872 -~~~---------------~~~-l~~h~~~V~~l~~s~dg~~las~s~-Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 932 (1088)
+.. ... -......+.+++|+|||++|++++. ...|.+|++.... ............ .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g 192 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence 111 000 0112234789999999999888764 4568888766432 222222222211 1
Q ss_pred CCeEEEEEcCCCCEEEEE--eCCeEEEEEcCcceeeeeee------------------cCCCcCEEEEEEeeCCCEEEEE
Q 001386 933 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------------PISSVPISQATFSCDCRMVFTS 992 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~------------------~~h~~~v~~l~fs~dg~~l~s~ 992 (1088)
.....++|+|||+++.+. .+++|.+|++..+....... ..+......+.++|||++|+++
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 357899999999998875 46789999987654321110 0112345678999999999876
Q ss_pred eC-C-----CcEEEEEcCCCceEEEe-ccccccCCCCccccccceEEEECCCCCCEEEEE-eCCCcEEEEeCCCCCC
Q 001386 993 FV-D-----GTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 993 s~-d-----g~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~-~~dg~v~~w~l~~~~~ 1061 (1088)
.. + +.|..|++.....+.+. ........+ -++..++++|.+|++|+++ ..++.|.+|++.....
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence 42 2 24777877654333222 111111111 3466689998678866666 5778999999866543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=7.8e-09 Score=114.92 Aligned_cols=370 Identities=9% Similarity=-0.005 Sum_probs=199.4
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe---------CCCcEEEEE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD 606 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s---------~dg~i~iwd 606 (1088)
.|.+++.++.. +.++.|.+||+.+++....+.........+....|+||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 57788776643 2244599999998887655555443334677788999999988764 356789999
Q ss_pred cCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCC
Q 001386 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
+.++..............+....|||||+.+|... ++.|.+.+..++...+........+
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~------------------- 157 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGV------------------- 157 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTT-------------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcce-------------------
Confidence 99887654433333333466789999999998876 4678888877664443222111100
Q ss_pred ceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc-ccceEEEEccC
Q 001386 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPR 765 (1088)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~v~iw~~~~ 765 (1088)
+..|.. -|-.+. .-...-..+-|||||++|+.... +..+..+.+..
T Consensus 158 --------------i~nG~~-----d~vyee--------------e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~ 204 (465)
T d1xfda1 158 --------------IYNGLS-----DWLYEE--------------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT 204 (465)
T ss_dssp --------------EEEEEC-----CHHHHH--------------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred --------------eecccc-----chhhhh--------------hhccccceEEECCCCCeEEEEEecccccceeeccc
Confidence 000000 000000 00001123456666666655442 33444444332
Q ss_pred CCCC--CC-------------CCCCCcccCCCCCCcceeeccCC--CCCCCCeeEEEEecCCCEEEEEeC-----CcEEE
Q 001386 766 NDLT--LS-------------TEVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISL 823 (1088)
Q Consensus 766 ~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~l~~~~d-----g~i~i 823 (1088)
.... +. ....+.++++.++.......... .....-+..+.|++++++++...+ ..+.+
T Consensus 205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~ 284 (465)
T d1xfda1 205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (465)
T ss_dssp CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence 1100 00 01112334444433221111110 012234678899999987777642 24888
Q ss_pred EEcCCceeEEEecCCC-CCe----EEEEEcCCCCcEEE---EEeCCC--eEEEEEcC------CceeeeeeccccCCeeE
Q 001386 824 YIVMTFKTILTIMPPS-PTA----TSLAFNPHDNNVIA---IGMDDS--TILIYNAR------SSEVISKLEGHSKRVTG 887 (1088)
Q Consensus 824 wd~~~~~~~~~~~~~~-~~i----~~l~~sp~d~~~la---sg~~dg--~i~lwd~~------~~~~~~~l~~h~~~V~~ 887 (1088)
+|..+++....+.... ..| ....|+| ||+.++ ....+| .++..++. .++.+..+....-.|..
T Consensus 285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~ 363 (465)
T d1xfda1 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK 363 (465)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred EcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence 9999988765544222 222 3467899 565332 222333 34443322 23344455444445666
Q ss_pred E-EECCCCCEEEEEe-CC--CcEEEEEcC--CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCC----eEEE
Q 001386 888 L-VFSDALNILVSSG-GD--AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAI 957 (1088)
Q Consensus 888 l-~~s~dg~~las~s-~D--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~----~i~v 957 (1088)
+ +|+++++.+...+ .+ +.-.+|.+. .+.. ..++...... .....++.|||||++++....+ .+.+
T Consensus 364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~---~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~ 438 (465)
T d1xfda1 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVE---NCTYFSASFSHSMDFFLLKCEGPGVPMVTV 438 (465)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSS---SCCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCC---CCCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence 5 6888887765433 33 223455544 3221 1222211111 1246789999999999974332 5778
Q ss_pred EEcCcceeeeee
Q 001386 958 YEAEELTCLKQW 969 (1088)
Q Consensus 958 wd~~~~~~~~~~ 969 (1088)
++..+++.+..+
T Consensus 439 ~~~~~~~~~~~L 450 (465)
T d1xfda1 439 HNTTDKKKMFDL 450 (465)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEE
Confidence 888877777664
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.9e-08 Score=103.68 Aligned_cols=222 Identities=9% Similarity=0.127 Sum_probs=134.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCC---EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg---~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+...+...+|||||++||...... .+.+.+..++... .+..+........|+|+|+.+ +.....++...++
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~ 110 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLY 110 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEE
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCcccee
Confidence 3567788999999999999876543 4677777765432 355677888999999999963 3333334333333
Q ss_pred e--CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCe--EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001386 471 D--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1088)
Q Consensus 471 d--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 546 (1088)
. ....... .............+... ....+++...+|. |...++...... .............++|+++.++.
T Consensus 111 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~ 187 (269)
T d2hqsa1 111 VMDLASGQIR-QVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVM 187 (269)
T ss_dssp EEETTTCCEE-ECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEE
T ss_pred ecccccccce-eeeeccccccccccccc-cccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEE
Confidence 2 2222222 22223333333333322 2234555555665 444455544332 33344556777899999999998
Q ss_pred EeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
.... .+...+.+.+...+... .. ... .......|+|||+.|+..+. ...|+++++..+.... +.... .
T Consensus 188 ~~~~-~~~~~i~~~~~~~~~~~-~~-~~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g 258 (269)
T d2hqsa1 188 VSSN-GGQQHIAKQDLATGGVQ-VL-SST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--G 258 (269)
T ss_dssp EEEC-SSCEEEEEEETTTCCEE-EC-CCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--S
T ss_pred Eeec-CCceeeeEeecccccce-Ee-ecC---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--C
Confidence 8754 34666777787766543 22 222 45567889999999986553 3468899997766543 33322 2
Q ss_pred CCceEEEec
Q 001386 624 ENPRICFNK 632 (1088)
Q Consensus 624 ~v~~v~~s~ 632 (1088)
.+...+|||
T Consensus 259 ~~~~p~WSP 267 (269)
T d2hqsa1 259 QVKFPAWSP 267 (269)
T ss_dssp EEEEEEECC
T ss_pred cEEeEEeCC
Confidence 356778887
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.04 E-value=4.3e-08 Score=102.59 Aligned_cols=243 Identities=11% Similarity=0.053 Sum_probs=159.3
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
|...+.++...+ .+..++++|||+ |+++...+++|..|+....... +......+.++
T Consensus 17 ~~~v~~~~p~~~-~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gl 73 (302)
T d2p4oa1 17 PAKIITSFPVNT-FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGL 73 (302)
T ss_dssp CEEEEEEECTTC-CEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEE
T ss_pred cccEEEECCCCC-CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceE
Confidence 444555665544 688999999998 7889888999988885543221 22355789999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
+|++||+++++...++.+.+|+......................+++.++++ ++++.+.++.+..+|..++.......
T Consensus 74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEec
Confidence 9999999999988888888888765432221111223445688999999998 78888888889989987765332221
Q ss_pred ----------cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE--ecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 483 ----------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 483 ----------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
........+.+ . ++.++++.+..+.|..++......... ..........++++++|++.++...
T Consensus 152 ~~~~~~~~~~~~~~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~- 227 (302)
T d2p4oa1 152 HPMLARSNSESVFPAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI- 227 (302)
T ss_dssp CGGGSCSSTTCCSCSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT-
T ss_pred CCccceeeccCcccccccccc--c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC-
Confidence 11123444444 3 335777778888999888776443221 1112234557999999986665433
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEE---eCCCCEEEEEeCC
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD 599 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~s~d 599 (1088)
.+.|..++.. ++......... ......+++| ++|++.|+.++..
T Consensus 228 ---~~~V~~i~p~-G~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 ---YNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ---TCCEEEECTT-CCEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ---CCcEEEECCC-CCEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence 4458888875 33333333221 1245789999 6677888776543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=3.4e-08 Score=100.74 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=157.8
Q ss_pred CCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001386 796 NSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 873 (1088)
Q Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~ 873 (1088)
.+......++++++|...++.. .+.+..++...................+++++ +++++++....+.+++++-.++.
T Consensus 11 ~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~ 89 (260)
T d1rwia_ 11 DFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQ 89 (260)
T ss_dssp CSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCC
T ss_pred CCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccce
Confidence 3456678999999999777654 46676666554333222222234567899999 78888877777777777666555
Q ss_pred eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeC
Q 001386 874 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 952 (1088)
Q Consensus 874 ~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d 952 (1088)
.+....+ .....++++.++++++++-..+..+..++....... .....+. .....++++++|+.+++ ..+
T Consensus 90 ~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~----~~p~~i~~~~~g~~~v~~~~~ 160 (260)
T d1rwia_ 90 TVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTGL----NDPDGVAVDNSGNVYVTDTDN 160 (260)
T ss_dssp EECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----ECCCCSC----CSCCEEEECTTCCEEEEEGGG
T ss_pred eeeeeee-eeecccccccccceeEeeccccccccccccccceee----eeeeccc----CCcceeeecCCCCEeeecccc
Confidence 5444433 345789999999998887766676777776653311 1111111 13578999999998777 466
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEE
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1032 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
+.|..++....... .+..........+++.++|.++++....+.|..++....... .+. . ..-..|..+
T Consensus 161 ~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~-~--------~~~~~P~~i 229 (260)
T d1rwia_ 161 NRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP-F--------TGLNTPLAV 229 (260)
T ss_dssp TEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC-C--------CSCCCEEEE
T ss_pred ccccccccccceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc-c--------CCCCCeEEE
Confidence 78999997754433 223344566789999999998888877888888876554322 111 0 011356789
Q ss_pred EECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1033 AAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1033 ~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
++++ +|+++++-..+++|..++..+
T Consensus 230 ~~d~-~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 230 AVDS-DRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp EECT-TCCEEEEEGGGTEEEEECCCG
T ss_pred EEeC-CCCEEEEECCCCEEEEEeCCC
Confidence 9999 788888777777777665543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=9e-08 Score=98.34 Aligned_cols=236 Identities=15% Similarity=0.093 Sum_probs=146.8
Q ss_pred CchhheeecccCCCCceeeeecCCCCeEEEEEcccC--cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
..+...+.|..+...+...+|||||++|+.+....+ .+.+.+..++.... +..+.+.+
T Consensus 26 ~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 85 (269)
T d2hqsa1 26 YDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHN 85 (269)
T ss_dssp TTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCE
T ss_pred CCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeeccc
Confidence 345555666666778899999999997655554444 35555655554332 44577889
Q ss_pred EEEEECCCCCEEEEEeCC-CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--EEEEeCCCCc
Q 001386 400 NRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGS 476 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~d-g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~--i~vwd~~~~~ 476 (1088)
....|||||+.++..... +...++....... .......+........+++++.. .+++...++. |.+.++..+.
T Consensus 86 ~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~ 162 (269)
T d2hqsa1 86 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGA 162 (269)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSC
T ss_pred ccceecCCCCeeeEeeecCCccceeecccccc--cceeeeecccccccccccccccc-ceecccccCCceEeeeeccccc
Confidence 999999999999887643 3333333322221 11123345555666778888875 4555555554 5555655554
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecC-CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
. ..+..+........+ ++++..++..+.+ +...+|..+...................|||||+.|+..+.. .+..
T Consensus 163 ~-~~~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~~ 238 (269)
T d2hqsa1 163 P-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMGS 238 (269)
T ss_dssp C-EECCCSSSEEEEEEE--CTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTEE
T ss_pred c-eeeeccccccccccc--ccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCCc
Confidence 3 333444555555556 4566666665554 455555544444344444455566788999999999877653 3467
Q ss_pred eEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
.|+++++..+... .+.... +.+...+|+|
T Consensus 239 ~l~~~~~dg~~~~-~lt~~~---g~~~~p~WSP 267 (269)
T d2hqsa1 239 VLNLVSTDGRFKA-RLPATD---GQVKFPAWSP 267 (269)
T ss_dssp EEEEEETTSCCEE-ECCCSS---SEEEEEEECC
T ss_pred EEEEEECCCCCEE-EEeCCC---CcEEeEEeCC
Confidence 8999999877654 444444 6778888988
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.99 E-value=3.6e-07 Score=93.95 Aligned_cols=240 Identities=10% Similarity=0.098 Sum_probs=163.7
Q ss_pred CeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC------CCCeEEEEEcCCCCcEEEEE-eCCCeEEEEEcCC
Q 001386 800 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIG-MDDSTILIYNARS 871 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg-~~dg~i~lwd~~~ 871 (1088)
....++++++|+++++-. +..|++||.+ |+.+..+... ......+++.++.+.++++. +.++.|.+++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 467999999999777654 6789999965 6666666321 12345667666345555543 34557777775 4
Q ss_pred ceeeeeec-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 872 SEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 872 ~~~~~~l~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
++....+. ........+++.++|+++++....+.+.+++.+.... ..+... .+. .....+++.++|+.+++.
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~---~~~g~~-~~~---~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL---HKFGCS-KHL---EFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE---EEEECT-TTC---SSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCcee---eccccc-ccc---cccceeeeccceeEEeee
Confidence 66555553 3456678899999999988877778788887665221 111111 111 357889999999888874
Q ss_pred -eCCeEEEEEcCcceeeeeee-cCCCcCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCceEEEeccccccCCCCccccc
Q 001386 951 -HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1027 (1088)
Q Consensus 951 -~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1088)
..+.|++||.. |+.+.++- .++......+++.++|..+++-.. ++.|.+|+ .+|+.+..+.... ...
T Consensus 175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~ 244 (279)
T d1q7fa_ 175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA 244 (279)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence 56789999965 56665542 344567889999999997776544 45799998 5688877765221 112
Q ss_pred cceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1028 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1028 ~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
++..+++.| ||. |+++..++.|++|+...-+
T Consensus 245 ~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 245 QCFDVALMD-DGS-VVLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp CEEEEEEET-TTE-EEEEETTTEEEEEECSCCC
T ss_pred CEeEEEEeC-CCc-EEEEeCCCeEEEEEeeeec
Confidence 467788999 776 5556789999999986544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.3e-06 Score=96.55 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=148.6
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe----
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~---- 415 (1088)
..|++++. ++. -..+|.|.+||+.+++...... . ..-....+....|||||++++...
T Consensus 22 ~~W~~~~~-~~~-~~~~g~i~~~~~~~~~~~~l~~--------------~--~~~~~~~~~~~~~SpD~~~vl~~~~~~~ 83 (465)
T d1xfda1 22 AKWISDTE-FIY-REQKGTVRLWNVETNTSTVLIE--------------G--KKIESLRAIRYEISPDREYALFSYNVEP 83 (465)
T ss_dssp CCBSSSSC-BCC-CCSSSCEEEBCGGGCCCEEEEC--------------T--TTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred CEEeCCCc-EEE-EeCCCcEEEEECCCCCEEEEEc--------------C--ccccccccceeEECCCCCeEEEEEcccc
Confidence 36888887 343 3557899999999887532110 0 011234667789999999998874
Q ss_pred -----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec-cCCccEE
Q 001386 416 -----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVY 489 (1088)
Q Consensus 416 -----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~~v~ 489 (1088)
..+.+.++|+.++.... +.........+....|||||+. ++-.. ++.|.+.+..++..++... +..+.|.
T Consensus 84 ~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~ 159 (465)
T d1xfda1 84 IYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIY 159 (465)
T ss_dssp CSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred eeEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceee
Confidence 35678999999886432 1122233455677899999995 33333 6778998888776654432 2222221
Q ss_pred E---------------EeeeeeCCceEEEEEecC-CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 490 S---------------LCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 490 ~---------------~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
. -++.+++||+.|+....| ..|..+.+.... ......+..+.+..-|.. ..
T Consensus 160 nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~--------np 226 (465)
T d1xfda1 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSE--------NP 226 (465)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSC--------CC
T ss_pred ccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccc-----ccccceeeeeeccccCCC--------CC
Confidence 0 122346788888876544 334444332110 000112222332222211 11
Q ss_pred ceeEEEEeCCCCceeEEEec---cccccccEEEEEEeCCCCEEEEEeC-C---CcEEEEEcCCCeeeEEEeCCCC--CC-
Q 001386 554 ESFLVEWNESEGAIKRTYQG---LQLQHNSVSVVHFDTAKDQILAAGD-D---HVIKIWDMNKVQLLTTIDAGGG--LP- 623 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~s~-d---g~i~iwd~~~~~~~~~~~~~~~--~~- 623 (1088)
...+.++|+.++........ ......-+..+.|+++++.++.... + ..+.++|..+|+....+..... ..
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~ 306 (465)
T d1xfda1 227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR 306 (465)
T ss_dssp EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred ceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEec
Confidence 23478888877654332221 1111234678899999876665432 2 3588899999887665543211 00
Q ss_pred CCceEEEecCCCEE
Q 001386 624 ENPRICFNKNGTLL 637 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l 637 (1088)
.-....|++||+.+
T Consensus 307 ~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 307 QNEEPVFSKDGRKF 320 (465)
T ss_dssp CCCCCEECTTSCSE
T ss_pred cCCceeEccCCCee
Confidence 12346788988754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=9e-07 Score=90.89 Aligned_cols=241 Identities=13% Similarity=0.148 Sum_probs=163.1
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccC--CCCCCCCeeEEEEecCCC-E
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTT--DSNSQEAVPCFALSKNDA-Y 812 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~dg~-~ 812 (1088)
....++++++|+.+++-..+..|++|+.+.. .+...... ..+.......+++.++.. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-------------------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 84 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-------------------FKFQFGECGKRDSQLLYPNRVAVVRNSGDI 84 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSC-------------------EEEEECCBSSSTTCBSSEEEEEEETTTTEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCCC-------------------EEEEecccCCCccccccccccccccccccc
Confidence 4678999999997777677888888874321 11111110 001222345566666544 4
Q ss_pred EEEEe--CCcEEEEEcCCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee--ccccCCeeE
Q 001386 813 LFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTG 887 (1088)
Q Consensus 813 l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l--~~h~~~V~~ 887 (1088)
+++.. ++.|..++.. ++....+.. .......+++.+ ++.++++....+.+.+++.. ++.+..+ ..+......
T Consensus 85 ~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~ 161 (279)
T d1q7fa_ 85 IVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNG 161 (279)
T ss_dssp EEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEE
T ss_pred ceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccce
Confidence 44443 4567777764 666666543 345678999999 78888888888889999854 6666655 346677889
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e-CCeEEEEEcCccee
Q 001386 888 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-ETHLAIYEAEELTC 965 (1088)
Q Consensus 888 l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~-d~~i~vwd~~~~~~ 965 (1088)
+++.++++.+++....+.|++||.+.... ..+. ..+.. .....+++.++|+.+++- . ++.|.+|+ .+|+.
T Consensus 162 i~~d~~g~i~v~d~~~~~V~~~d~~G~~~---~~~g-~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~ 233 (279)
T d1q7fa_ 162 VVVNDKQEIFISDNRAHCVKVFNYEGQYL---RQIG-GEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQL 233 (279)
T ss_dssp EEECSSSEEEEEEGGGTEEEEEETTCCEE---EEES-CTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCE
T ss_pred eeeccceeEEeeeccccceeeeecCCcee---eeec-ccccc---cCCcccccccCCeEEEEECCCCcEEEEEC-CCCCE
Confidence 99999999998888889999999876321 1111 11222 257899999999988873 3 44699998 45877
Q ss_pred eeeeecC-CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 966 LKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 966 ~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
+..+... .......+++.+||.++ +++.++.|++|......
T Consensus 234 ~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 234 ISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCC
T ss_pred EEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeec
Confidence 7665422 24568899999999755 45688999999987664
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.93 E-value=1.8e-07 Score=97.89 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=155.9
Q ss_pred CeeEEEEecCCCEEEEEe--------CCcEEEEEcCCceeEEEecCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 800 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~--------dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
....+++.++|+++++.. +++|..||..+++........ ......++|.+ ++..++++...+.|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 356789999999888753 356888998877654433221 23467899999 77777777777789999
Q ss_pred EcCCceeeeeeccccC----CeeEEEECCCCCEEEEEeC---------------CCcEEEEEcCCCceeeeeeeecCCCC
Q 001386 868 NARSSEVISKLEGHSK----RVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV 928 (1088)
Q Consensus 868 d~~~~~~~~~l~~h~~----~V~~l~~s~dg~~las~s~---------------Dg~i~iwd~~~~~~~~~~~~~~~~~~ 928 (1088)
+...+..........+ ..+.+++.++|++.++-.. +|.|..++.+. +. ........
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~--~~~~~~~~-- 172 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM--IQVDTAFQ-- 172 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE--EEEEEEES--
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ce--eEeeCCcc--
Confidence 9776543221111111 3578999999998887532 23343333332 11 11111111
Q ss_pred ccCCCCeEEEEEcCCCC----EEEE--EeCCeEEEEEcCcceeee------eeecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 929 MTLAPSETHIQFHKDQT----RFLL--VHETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 929 ~~~~~~v~~~~fs~dg~----~l~~--~~d~~i~vwd~~~~~~~~------~~~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
....++|+|++. .|.+ +..+.|..||+.....+. .+...+......+++..+|+..++....+
T Consensus 173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence 246799999875 4444 356788888876432221 11112233467899999999888887889
Q ss_pred cEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCC-EEEEEeCCCcEEEEeCCCCCC
Q 001386 997 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 997 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~-~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
.|.+||..++.....+.... -.+.+++|.| |++ ++++.+.+|+|...++...+.
T Consensus 248 ~I~~~dp~~g~~~~~i~~p~----------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIRCPF----------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp EEEEECTTCBSCSEEEECSS----------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCBC
T ss_pred EEEEEeCCCCEEEEEEECCC----------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCCh
Confidence 99999999888776654211 2466799999 665 667777889999999877664
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=1.1e-07 Score=96.72 Aligned_cols=238 Identities=9% Similarity=-0.026 Sum_probs=147.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
....|+++++|..+++..+..+.|..++......... ..+-......++++++|+.+++..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v~d~ 75 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTDF 75 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEEEET
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEEeee
Confidence 4589999999995555555567777776654432211 111123456789999999888776
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
..+.+++++-.++..+. .. ........+++.++++ ++++-.....+..++...................+++
T Consensus 76 ~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~-- 147 (260)
T d1rwia_ 76 NNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV-- 147 (260)
T ss_dssp TTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE--
T ss_pred eeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeee--
Confidence 66667666555443222 12 2234678999999998 6666666667777775543322211112233456776
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
++++.++++...++.|..++.+.................+++.++|++.++... .+.|..++...... ..+....
T Consensus 148 ~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~~~~ 222 (260)
T d1rwia_ 148 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLPFTG 222 (260)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECCCCS
T ss_pred cCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEccCC
Confidence 446678888888899999988765544433344456788999999987766532 44577777654432 2222111
Q ss_pred cccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
-.....++++++|+.+++-..++.|+.++.
T Consensus 223 --~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 223 --LNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp --CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred --CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 145688999999887777666676665554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.92 E-value=8e-08 Score=100.43 Aligned_cols=235 Identities=10% Similarity=0.043 Sum_probs=150.4
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-ee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS 876 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~-~~ 876 (1088)
..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+.+|+...... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578899999999988876 78888888653 3 334445667899999999 889999998889888888754321 11
Q ss_pred ee--ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC--CCCccCCCCeEEEEEcCCCCEEEE--E
Q 001386 877 KL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLL--V 950 (1088)
Q Consensus 877 ~l--~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~fs~dg~~l~~--~ 950 (1088)
.+ .........+++.++|+++++.+.++.+..++..++.......-... ............+.++ +..+.. .
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 22 12445688999999999999988899888888887643221111000 0111111234555554 444444 4
Q ss_pred eCCeEEEEEcCcceeeeee-ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccc
Q 001386 951 HETHLAIYEAEELTCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1029 (1088)
Q Consensus 951 ~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1088)
..+.|+.++.......... ...+......++|++||.+.++...++.|..++... +........ ..-..+
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~--------~~~~~p 253 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAE--------QGVIGS 253 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGG--------GTCTTE
T ss_pred CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecC--------CCCCCc
Confidence 6678888887754432221 111234456799999999888877889999987654 322221100 111346
Q ss_pred eEEEE---CCCCCCEEEEEeCC
Q 001386 1030 HAIAA---HPLKPTQFAVGLTN 1048 (1088)
Q Consensus 1030 ~~~~~---~p~d~~~l~~~~~d 1048 (1088)
.+++| .| |++.|.+++..
T Consensus 254 t~vafg~~~~-D~~~Lyvtt~~ 274 (302)
T d2p4oa1 254 TAVAFGQTEG-DCTAIYVVTNG 274 (302)
T ss_dssp EEEEECCSTT-TTTEEEEEECT
T ss_pred eEEEEcCCCC-CCCEEEEECCC
Confidence 78999 55 67777666544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.87 E-value=6.5e-07 Score=93.89 Aligned_cols=242 Identities=9% Similarity=0.096 Sum_probs=154.6
Q ss_pred CeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCcee
Q 001386 800 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEV 874 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~----dg~i~lwd~~~~~~ 874 (1088)
....++|.++|++.++-. +++|..|+..+.+....+.........+++++ +|+++++... .+.+...+..++..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence 456899999999666554 78899999887776666665667789999999 7888776543 23455556555544
Q ss_pred eeeecc--ccCCeeEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCE
Q 001386 875 ISKLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 946 (1088)
Q Consensus 875 ~~~l~~--h~~~V~~l~~s~dg~~las~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~ 946 (1088)
...... -......+++.++|++.++.... +.+..++.+.+... ...... .....++|+||++.
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~-------~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDEKV 190 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTSSE
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeecc-------ceeeeeeeccccce
Confidence 333322 12347789999999987765332 22444444432211 111111 13568999999997
Q ss_pred EEEE--eCCeEEEEEcCcc-eeee---e---eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc
Q 001386 947 FLLV--HETHLAIYEAEEL-TCLK---Q---WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1017 (1088)
Q Consensus 947 l~~~--~d~~i~vwd~~~~-~~~~---~---~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 1017 (1088)
|.++ ..+.|+.|++... .... . ...........+++..+|.+.++....+.|.+|+ ..|+.+.++.....
T Consensus 191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGR 269 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTG
T ss_pred EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCc
Confidence 7654 5688999987632 1111 1 0111123467899999999888888899999999 57998888763321
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeCC------CcEEEEeCC
Q 001386 1018 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN------GEVYVIEPN 1057 (1088)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d------g~v~~w~l~ 1057 (1088)
..+....+.+++|.| +.+.+++...| |.|+..+..
T Consensus 270 ----~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 270 ----DEGHMLRSTHPQFIP-GTNQLIICSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp ----GGTCSCBCCEEEECT-TSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred ----CCCcCceeeeEEEeC-CCCEEEEEcCCCCcCCceeEEEEeCC
Confidence 112234567899998 55656555443 345555543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.85 E-value=1e-06 Score=91.83 Aligned_cols=246 Identities=14% Similarity=0.086 Sum_probs=153.5
Q ss_pred CceeeeecCCCCeEEEEEcc-------cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 336 SPMSMDFHPVQHTLLLVGTN-------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~-------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
....++|.|||+. +++... +++|..||..++........ ......+....++|.++|
T Consensus 19 g~EGpa~d~dG~l-y~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~~dg 82 (314)
T d1pjxa_ 19 GAEGPVFDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCDRDA 82 (314)
T ss_dssp TCEEEEECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEECSSS
T ss_pred CCeEeEEeCCCCE-EEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEeCCC
Confidence 5677899999994 444322 46788999888764432100 011112346789999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCC-CCEEEEEecCCCCcEEEEEEeC---------------CCcEEEEeC
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWDA 472 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s~---------------d~~i~vwd~ 472 (1088)
..|+++...+.|...+.+++..........+.. ...+.+++.++|. +.++-.. +|.|..++.
T Consensus 83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~ 160 (314)
T d1pjxa_ 83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee
Confidence 988888777778888987653221100111111 1357899999998 5555321 234444543
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCc---eEEEEEecCCeEEEEECCCCCceE------EecCC-CCceEEEEEccCCC
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDAP-GLGCTRMAYSANGR 542 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~-~~~v~~~~~s~~g~ 542 (1088)
.|+...... .-..-+.++|.+..++ .+.++-+..+.|..||+....... .+... ......+++..+|+
T Consensus 161 -dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 161 -DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp -TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred -cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 344333222 2233467788765543 245556778889999876544322 11111 22356799999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE-EEEeCCCcEEEEEcC
Q 001386 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 608 (1088)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~ 608 (1088)
..++... .+.|.+||..+++.+..+.... ....+++|.|+++.| ++.+.+|.|...++.
T Consensus 239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEcC----CCEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 7766543 4569999999888777776554 568899999998755 455677888777764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.57 E-value=3.6e-06 Score=86.46 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=128.4
Q ss_pred eeecCC--CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC-
Q 001386 340 MDFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS- 416 (1088)
Q Consensus 340 v~~spd--g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~- 416 (1088)
+..||| |++++.+.. +.|.+.|+.+++... +..+.+.+...+|||||++||....
T Consensus 4 ~~~sPdi~G~~v~f~~~--~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~ 61 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC--DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMR 61 (281)
T ss_dssp CCEEEEEETTEEEEEET--TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEE
T ss_pred cccCCCCCCCEEEEEeC--CcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEee
Confidence 356899 997666643 678888999887543 5557788999999999999997642
Q ss_pred C-----CEEEEEEccCCCccccee---EeccCCCCEEEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEec
Q 001386 417 K-----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 417 d-----g~i~vwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~d~~~l~l~s~s~------d~~i~vwd~~~~~~~~~~~ 482 (1088)
+ ..|.+++..+++..+... ............+|+|||+ .++.... ...+...+...+.......
T Consensus 62 ~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (281)
T d1k32a2 62 GSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLNL 139 (281)
T ss_dssp STTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECCS
T ss_pred CCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEecC
Confidence 1 247777887775432110 0011223456789999999 4444322 1234455554444322211
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCC-----------eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDG-----------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+ ......+ ..++..++...... ......... .................++++ .++... +.
T Consensus 140 ~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~ 210 (281)
T d1k32a2 140 G---PATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH--RIYFIT-DI 210 (281)
T ss_dssp C---SCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT--EEEEEE-CT
T ss_pred C---ccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeecc--ccceec-cc
Confidence 1 1111111 22223333222111 011111111 111122222233344455554 333333 33
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
.+...|+++|+.++...+ +.... ... ...|+|||+.|+.. .++.|+++|+.+++...
T Consensus 211 ~~~~~l~~~d~~g~~~~~-lt~~~--~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 211 DGFGQIYSTDLDGKDLRK-HTSFT--DYY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp TSSCEEEEEETTSCSCEE-CCCCC--SSC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred ccccceEEEeCCCCceEE-eecCC--Ccc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 456679999998776544 33222 122 34689999998764 46889999998877544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.56 E-value=3.8e-05 Score=79.96 Aligned_cols=235 Identities=11% Similarity=0.024 Sum_probs=146.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC----CCcEEEEe
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWD 471 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~----d~~i~vwd 471 (1088)
...+..++|.++|++.++-...+.|..|+.++++... .+.........++|.+||+ ++++... .+.+...+
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~---~~~~~~~~p~gla~~~dG~--l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEEC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE---EEeCCCCCeeEEEECCCCC--EEEEecCCCccceeEEEEc
Confidence 3445679999999977777788899999988765333 2334556788999999998 5555432 23355555
Q ss_pred CCCCceeEEeccC--CccEEEEeeeeeCCceEEEEEec------CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 472 AVTGSRTYSFEGH--GAPVYSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 472 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
..++......... ....+.+++ .++|.+.++... .+.+..++.+.... ..+...-.....++|+|+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~nd~~~--d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 114 ENGDNLQDIIEDLSTAYCIDDMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKV 190 (319)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSE
T ss_pred CCCceeeeeccCCCcccCCcceeE--EeccceeecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccce
Confidence 5555444333221 234566666 556666555322 12344444333222 222222224567999999998
Q ss_pred EEEEeeCCCCceeEEEEeCCC-CceeEEEe----ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 544 LFSCGTSKEGESFLVEWNESE-GAIKRTYQ----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
|+.+.. ..+.|+.|++.. +....... ...........+++..+|+..++....+.|.+||. +|+.+..+..
T Consensus 191 lyvad~---~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~ 266 (319)
T d2dg1a1 191 LWVTET---TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 266 (319)
T ss_dssp EEEEEG---GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred EEEecc---cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence 877643 245688888653 22221111 11101134678999999998888889999999995 6888888875
Q ss_pred CC----CCCCCceEEEecCCCEEEEEeC
Q 001386 619 GG----GLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 619 ~~----~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.. ....+.+++|.+++..+++.+.
T Consensus 267 P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 267 PGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 43 2234679999998877766654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.40 E-value=1.3e-05 Score=82.07 Aligned_cols=199 Identities=13% Similarity=0.111 Sum_probs=119.8
Q ss_pred EEecC--CCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC-C-----CeEEEEEcCCceeee
Q 001386 805 ALSKN--DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D-----STILIYNARSSEVIS 876 (1088)
Q Consensus 805 ~~s~d--g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-d-----g~i~lwd~~~~~~~~ 876 (1088)
..||| |+.+|..+++.|.+.|+.+++.. .+..+...+...+||| ||+.||.... + ..|.+++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 46899 99999999999999999987754 5666777889999999 7888876532 2 258888888876543
Q ss_pred eec------cccCCeeEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeee--------------eeeecCCCCc-
Q 001386 877 KLE------GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTC--------------RSLQTPDGVM- 929 (1088)
Q Consensus 877 ~l~------~h~~~V~~l~~s~dg~~las~s~D------g~i~iwd~~~~~~~~~--------------~~~~~~~~~~- 929 (1088)
... .........+|+|||+.|+..... ..+...+...+..... ..+.......
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence 221 122345678999999999875432 2244445443321110 0000000000
Q ss_pred --------------------------cCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCcceeeeeeecCCCcCEEEEE
Q 001386 930 --------------------------TLAPSETHIQFHKDQTRFLLVH--ETHLAIYEAEELTCLKQWFPISSVPISQAT 981 (1088)
Q Consensus 930 --------------------------~~~~~v~~~~fs~dg~~l~~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~ 981 (1088)
..........++++........ ...|.++|+.+++... +.......+ ..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~--~~ 239 (281)
T d1k32a2 163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYP--RH 239 (281)
T ss_dssp TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCE--EE
T ss_pred eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEE-eecCCCccc--cc
Confidence 0001122333444322222222 2368888888766443 232223333 46
Q ss_pred EeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 982 FSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 982 fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
|||||+.|+.. .++.|.++|+.+++..
T Consensus 240 ~SpDG~~I~f~-~~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 240 LNTDGRRILFS-KGGSIYIFNPDTEKIE 266 (281)
T ss_dssp EEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred CcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence 89999998864 5788999999998765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.38 E-value=0.00021 Score=73.05 Aligned_cols=219 Identities=9% Similarity=0.003 Sum_probs=143.8
Q ss_pred eEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001386 802 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
.+..|.+....|...+ .++|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 3567887655555554 788999999988653 332 345788999998 7777664 455 58999999887543221
Q ss_pred --c--ccCCeeEEEECCCCCEEEEEeCC----CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-
Q 001386 880 --G--HSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 950 (1088)
Q Consensus 880 --~--h~~~V~~l~~s~dg~~las~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~- 950 (1088)
. ....++.+.+.|+|++.++...+ +.-.+|.+..++... ... +.. ....++|+++++.+..+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~---~~~----~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LFA---DIS----IPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EEE---EES----SEEEEEECTTSCEEEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE--Eee---ccC----CcceeeecCCCceEEEee
Confidence 1 12357889999999987765432 345677776654222 111 111 25689999999987764
Q ss_pred -eCCeEEEEEcCcc--ee-----eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCC
Q 001386 951 -HETHLAIYEAEEL--TC-----LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1022 (1088)
Q Consensus 951 -~d~~i~vwd~~~~--~~-----~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1022 (1088)
..+.|..|++... .. +.....+..+....+++..+|.+.++.-..+.|..|| ..|+++..+....
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~------ 239 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPG------ 239 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSC------
T ss_pred cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCC------
Confidence 4578888886421 11 1111223355678899999999888777788999999 6788888876221
Q ss_pred ccccccceEEEECCCCCCEEEEE
Q 001386 1023 SCLHVYPHAIAAHPLKPTQFAVG 1045 (1088)
Q Consensus 1023 ~~~~~~~~~~~~~p~d~~~l~~~ 1045 (1088)
-.+++++|-..|.+.|++.
T Consensus 240 ----~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 240 ----KQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp ----SBEEEEEEESTTSCEEEEE
T ss_pred ----CceEEEEEeCCCCCEEEEE
Confidence 1467889963255555443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.19 E-value=0.00052 Score=69.94 Aligned_cols=216 Identities=9% Similarity=0.010 Sum_probs=140.1
Q ss_pred EEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 446 ~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
...|.+.... +..+--..+.|..||.++++.. .+. ....+.++++. ++|.++++ +.+ .+..+|..+++.....
T Consensus 22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence 4567775554 3444446678999998888653 232 34567777764 45656554 444 5888999887765443
Q ss_pred cCC----CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE-EeCCC
Q 001386 526 DAP----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH 600 (1088)
Q Consensus 526 ~~~----~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg 600 (1088)
... ...+..+.+.|+|++.++..........-.+|....++........ ...+.++|+++++.++. -+..+
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~ 170 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN 170 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence 322 2257889999999987765543332333455666667655555443 35688999999987655 45678
Q ss_pred cEEEEEcCCC------eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeec
Q 001386 601 VIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1088)
Q Consensus 601 ~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 673 (1088)
.|..+++... +................+++..+|++.++....+.|..|+- .++.+..+......+++++|.
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence 8888887431 11122222222223567899999998888888889999994 577777777666677777775
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.93 E-value=0.0062 Score=67.95 Aligned_cols=379 Identities=11% Similarity=0.003 Sum_probs=191.4
Q ss_pred EEEEeCCCcEEEEeCC-CCceeEEeccCCc----c------E-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 458 VITCGDDKTIKVWDAV-TGSRTYSFEGHGA----P------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 458 l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~----~------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
+++.+.++.|...|.. +|+.+.++..... . + ..+++. + ..++.++.||.+.-.|.++++.....
T Consensus 66 yv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~---~-~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 66 YVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---A-GQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---T-TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee---C-CeEEEEeCCCcEEeeehhhhhhhccc
Confidence 3333346788888874 6998887642110 0 0 112221 2 36778889999999999998877655
Q ss_pred cCCCC----ceEEEEEccCCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEecccc-----------------------
Q 001386 526 DAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL----------------------- 576 (1088)
Q Consensus 526 ~~~~~----~v~~~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~----------------------- 576 (1088)
..... .+++--.-.++. ++.+.... ...+.|+-+|..+|+.+-.+.....
T Consensus 142 ~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred cccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence 43211 111111112333 33333211 1356799999999999877653210
Q ss_pred -----------ccccE-EEEEEeCCCCEEEEEeC----------------CCcEEEEEcCCCeeeEEEeCCCCC------
Q 001386 577 -----------QHNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL------ 622 (1088)
Q Consensus 577 -----------~~~~v-~~~~~~~~~~~l~~~s~----------------dg~i~iwd~~~~~~~~~~~~~~~~------ 622 (1088)
....+ ...++.++...++.+.. ...+.-.|.++|+.+..++...+.
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred ccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccc
Confidence 00111 23466677777666543 245778899999999888753221
Q ss_pred -CCCceEEEecCCC---EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCC
Q 001386 623 -PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 698 (1088)
Q Consensus 623 -~~v~~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1088)
..........+++ .++.++.+|.+.++|..+++.+...+.....-......+.
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~----------------------- 357 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLK----------------------- 357 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTT-----------------------
T ss_pred ccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccccccc-----------------------
Confidence 1111222333454 4677888999999999999876432211100000000000
Q ss_pred CcccccccCccceeccccccC-CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCc
Q 001386 699 KPEISVEAENKSEVEKPLFAR-PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPR 777 (1088)
Q Consensus 699 ~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 777 (1088)
....+....... .........+.......-...+++|+...++....+............
T Consensus 358 ---------~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~---------- 418 (571)
T d2ad6a1 358 ---------TGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY---------- 418 (571)
T ss_dssp ---------TCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC----------
T ss_pred ---------ccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccc----------
Confidence 000000000000 000011111111111111235788888877777665443332211000
Q ss_pred ccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001386 778 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 857 (1088)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las 857 (1088)
..+. ......+...+..........|.|.-+|+.+++.+.+.............. .+.++++
T Consensus 419 ----~~~~------------~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T--agglVf~ 480 (571)
T d2ad6a1 419 ----RAGQ------------FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWY 480 (571)
T ss_dssp ----CTTS------------CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE--TTTEEEE
T ss_pred ----cCCc------------cccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEe--cCCEEEE
Confidence 0000 000111111111110000113678889999999887765332222111122 2457888
Q ss_pred EeCCCeEEEEEcCCceeeeeeccccC-CeeEEEECCCCC-EEEEEe
Q 001386 858 GMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALN-ILVSSG 901 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~-~las~s 901 (1088)
|+.||.++-+|.++|+.+.++.--.. .-.-+.|..||+ |+++..
T Consensus 481 G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 481 ATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence 99999999999999999977753221 112255666885 555543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.82 E-value=0.0072 Score=67.66 Aligned_cols=203 Identities=10% Similarity=0.050 Sum_probs=117.6
Q ss_pred EEEEEeCCCcEEEEeC-CCCceeEEeccCCc----------cE-EEEeeeee--CCceEEEEEecCCeEEEEECCCCCce
Q 001386 457 SVITCGDDKTIKVWDA-VTGSRTYSFEGHGA----------PV-YSLCPHAK--ENIHFIFSISVDGKIKAWLYDSLGAR 522 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~-~~~~~~~~~~~~~~----------~v-~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~ 522 (1088)
++++.+.++.+...|. ++|+.+.++..... .+ ..+++... ....+++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 3344454566777776 57888877642110 01 22333222 12347888999999999999999887
Q ss_pred EEecCCCCce-EEEEEcc--CCCEEEEEeeC--CCCceeEEEEeCCCCceeEEEeccc----------------------
Q 001386 523 VDYDAPGLGC-TRMAYSA--NGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQ---------------------- 575 (1088)
Q Consensus 523 ~~~~~~~~~v-~~~~~s~--~g~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~---------------------- 575 (1088)
..+....... ..+.-+| .+..++++... ....+.|+-+|..+|+.+-++....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~ 224 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG 224 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred ccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccc
Confidence 7664322110 0111111 13344444321 1235779999999999987764321
Q ss_pred -------------cccccEEEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCCeeeEEEeCCCCCC---
Q 001386 576 -------------LQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP--- 623 (1088)
Q Consensus 576 -------------~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~--- 623 (1088)
.....-..+++.+....++.+..+ ..|.-.|+.+|+.+..++...+..
T Consensus 225 ~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~ 304 (596)
T d1w6sa_ 225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY 304 (596)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCC
Confidence 000112244667777777765432 347788999999988776432210
Q ss_pred ---CCceEEE--ecCC---CEEEEEeCCCcEEEEeCCCCCcccc
Q 001386 624 ---ENPRICF--NKNG---TLLAVIANENRIKILETPESNSVDA 659 (1088)
Q Consensus 624 ---~v~~v~~--s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 659 (1088)
....+.- ..+| +.++.+..+|.+.++|..+++.+..
T Consensus 305 d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~ 348 (596)
T d1w6sa_ 305 AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (596)
T ss_dssp CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence 1111111 2244 3677788899999999999987643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.82 E-value=0.0016 Score=69.47 Aligned_cols=285 Identities=8% Similarity=-0.052 Sum_probs=143.5
Q ss_pred CceeeeecCCCCeEEEEEccc-----C------cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNV-----G------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~d-----g------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+...+...||+ +++.|+.+ + .+.+||..+++-..... ....|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEE
Confidence 334445566787 66666532 1 36789998876432111 12223333445688
Q ss_pred CCCCCEEEEEeCC-CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC------CcEEEEeCCCCce
Q 001386 405 SPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSR 477 (1088)
Q Consensus 405 s~dg~~las~~~d-g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d------~~i~vwd~~~~~~ 477 (1088)
.+||++++.|+.+ ..+.+||..++.-.. ...+... ..-..++..+||+ +++.++.+ ..+.+||+.+.+-
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-ccccccc-ccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence 8999999998755 579999998764321 1111111 1223567778888 66766643 3689999887653
Q ss_pred eEEec---------cCCccE----EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC--C----C--CceEEEE
Q 001386 478 TYSFE---------GHGAPV----YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P----G--LGCTRMA 536 (1088)
Q Consensus 478 ~~~~~---------~~~~~v----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~----~--~~v~~~~ 536 (1088)
...-. .+...+ ....+ ...+++.++.+..++.+.+++..+......... . . ..-.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 21100 000000 00011 123556666666666677766655432221100 0 0 0112222
Q ss_pred -EccCCCEEEEEeeCCCC----ceeEEEEeCC---CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---------
Q 001386 537 -YSANGRRLFSCGTSKEG----ESFLVEWNES---EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------- 599 (1088)
Q Consensus 537 -~s~~g~~l~~~~~~~~~----~~~i~iwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------- 599 (1088)
...+++.++.++..... .....+.+.. .................-.+....++++.+++|+.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 23467777776643211 1122222222 111111111111001122345556888988887743
Q ss_pred --CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 600 --HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 600 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
..+.+||..+.+....-........-....+.+||+.++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899887764332221111111123446789999999884
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.81 E-value=0.0088 Score=66.61 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=120.4
Q ss_pred CcEEEEEcCCceeEEEecCCC------------------------------CCe-EEEEEcCCCCcEEEEEeC-------
Q 001386 819 GVISLYIVMTFKTILTIMPPS------------------------------PTA-TSLAFNPHDNNVIAIGMD------- 860 (1088)
Q Consensus 819 g~i~iwd~~~~~~~~~~~~~~------------------------------~~i-~~l~~sp~d~~~lasg~~------- 860 (1088)
|.|.-+|.++|+.+..+..-. ..+ ..+++.+ ...++..+..
T Consensus 178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~ 256 (560)
T d1kv9a2 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR 256 (560)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence 679999999999988765211 011 2356667 4455554321
Q ss_pred ------------CCeEEEEEcCCceeeeeeccccCCeeE---------EEECCCC---CEEEEEeCCCcEEEEEcCCCce
Q 001386 861 ------------DSTILIYNARSSEVISKLEGHSKRVTG---------LVFSDAL---NILVSSGGDAQIFVWDVDGWGI 916 (1088)
Q Consensus 861 ------------dg~i~lwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg---~~las~s~Dg~i~iwd~~~~~~ 916 (1088)
...|.-.|+.+|+.+..++.....+.. +.+..++ ..++.++.+|.+.++|-.+++.
T Consensus 257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~ 336 (560)
T d1kv9a2 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (560)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence 235777799999987666543222211 2222244 3577788999999999999875
Q ss_pred eeeeeeecC-----------------C-----------CCccCCCCeEEEEEcCCCCEEEE-Ee----------------
Q 001386 917 QTCRSLQTP-----------------D-----------GVMTLAPSETHIQFHKDQTRFLL-VH---------------- 951 (1088)
Q Consensus 917 ~~~~~~~~~-----------------~-----------~~~~~~~~v~~~~fs~dg~~l~~-~~---------------- 951 (1088)
......... . ....-...-...+++|+...+.+ ..
T Consensus 337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~ 416 (560)
T d1kv9a2 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (560)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence 432111000 0 00000001135678888877776 21
Q ss_pred --------------------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001386 952 --------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 952 --------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~ 1011 (1088)
.+.+.-||+.+|+.+.+...+ .+...-.++-.|.++++|+.||.++.+|..+|+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~ 494 (560)
T d1kv9a2 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (560)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence 146888999999988775433 2222223455677888999999999999999999988
Q ss_pred eccc
Q 001386 1012 ILST 1015 (1088)
Q Consensus 1012 ~~~~ 1015 (1088)
+...
T Consensus 495 ~~l~ 498 (560)
T d1kv9a2 495 FEAQ 498 (560)
T ss_dssp EECS
T ss_pred EECC
Confidence 8743
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.79 E-value=0.021 Score=56.14 Aligned_cols=240 Identities=11% Similarity=-0.010 Sum_probs=148.2
Q ss_pred CEEEEEeCCCEEEEEEccCCCccc--ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
.+|+.+. .+.|+-.+++...... ....+..+...+..++|.+.++. +..+-..++.|+..++..+.....+...-.
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 4555543 3457777776543221 11123344456788999988775 344555677899888876655544544445
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.+..+++.+. .+.+..+-...+.|.+.+++.................+++.|...+++..... .....|..-++....
T Consensus 80 ~p~~iAvD~~-~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~-~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSCC
T ss_pred cccEEEEecc-CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecC-CCCcEEEEecCCCCC
Confidence 6788888543 33445566667899999998776655444444578899999988888765432 123345555655443
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
........- .....+++.+.++.|+.+ ...+.|...++........+.... ....+++. ++.+..+-...+.
T Consensus 158 ~~~i~~~~~---~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~~ 230 (263)
T d1npea_ 158 RRILAQDNL---GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNS 230 (263)
T ss_dssp CEEEECTTC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTE
T ss_pred ceeeeeecc---cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCCE
Confidence 333332222 467899999888888665 467889999987655444443222 23467765 3444444446688
Q ss_pred EEEEeCCCCCcccc
Q 001386 646 IKILETPESNSVDA 659 (1088)
Q Consensus 646 i~iwd~~~~~~~~~ 659 (1088)
|...+..+++....
T Consensus 231 I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 231 VIAMDLAISKEMDT 244 (263)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEECCCCccceE
Confidence 88888887765543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.77 E-value=0.00069 Score=69.49 Aligned_cols=191 Identities=10% Similarity=0.077 Sum_probs=123.7
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCceeEEEecCC-CCCeEEEEEcCC-CCcEEEEEeCCC------------------eEE
Q 001386 808 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFNPH-DNNVIAIGMDDS------------------TIL 865 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~-d~~~lasg~~dg------------------~i~ 865 (1088)
+||+++++.. +++|.+.|+.+.+..+.+..+ ...+..+...++ +..|++.++.+. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4899999997 688999999999987655433 345666666431 445777766532 367
Q ss_pred EEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC---------------cEEEEEc-------------------
Q 001386 866 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDV------------------- 911 (1088)
Q Consensus 866 lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg---------------~i~iwd~------------------- 911 (1088)
++|..+.+....+.- .+....+.+++||+++++.+.+. .+.+++.
T Consensus 177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 789998887766653 23467899999999999877431 1333332
Q ss_pred ----CCCc-eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCcceeee--------ee--ecCCC
Q 001386 912 ----DGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK--------QW--FPISS 974 (1088)
Q Consensus 912 ----~~~~-~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~~~~--------~~--~~~h~ 974 (1088)
.... ......+.... ....+.++|||++++++ -+.++.|+|++.-.... .. .....
T Consensus 256 VVD~~~~~~~~v~~yIPVpK-------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg 328 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 328 (459)
T ss_dssp EEECSGG--CSSEEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred eecccccCCcceeEEEecCC-------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence 2100 00011111111 24568999999999995 57899999987432110 00 11124
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 975 VPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 975 ~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
-....-+|...|.-..|-.-|..|.-|++...
T Consensus 329 lgPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred cCccccccCCCceEEEEeeccceEEEEecchh
Confidence 55677788888865556668999999998544
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.026 Score=55.64 Aligned_cols=239 Identities=9% Similarity=-0.039 Sum_probs=142.8
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc----eeEEeccCC
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG 485 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~----~~~~~~~~~ 485 (1088)
+|+.+... .|+..++.+.... .+......+..++|.+..+. +..+-...+.|.--++.... ....+...-
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 34444333 4888888765432 23344557789999988875 33444456667766654321 112222233
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
..+..+++.+. .+.+..+-...+.|.+.+++.................+++.|...+|+..... ....|...++...
T Consensus 77 ~~p~glAvD~~-~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs 153 (266)
T d1ijqa1 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (266)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceEEEeec-cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence 44566777543 33455555677889999998777666666556678899999977777665432 2345777776544
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.........- .....+++.+.++.|+.+ ...+.|...++....................+++. ++.+..+-..++
T Consensus 154 ~~~~l~~~~~---~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~ 229 (266)
T d1ijqa1 154 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (266)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred ceeccccccc---ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCC
Confidence 4433333222 457889999988877766 45678888898765544444433332233456665 334444444667
Q ss_pred cEEEEeCCCCCcccccc
Q 001386 645 RIKILETPESNSVDAAG 661 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~ 661 (1088)
.|...+..++.....+.
T Consensus 230 ~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 230 AIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EEEEEETTTCCCCEEEE
T ss_pred eEEEEECCCCcceEEEE
Confidence 88888877765554443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=0.026 Score=55.45 Aligned_cols=225 Identities=12% Similarity=0.052 Sum_probs=140.0
Q ss_pred CCCCCeEEEEECCCCCEEEEE-eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 394 DPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
.+...+..++|.+..+.|... ..++.|+..++.++.... .+......+..+++..-+.. +.++-...+.|.+.++
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence 344568889999877766655 456788888887664322 23233356889999876664 3445566779999998
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
....+...+...-.....+++.|. .|.++.+-...+ .|..-+++...........-.....+++.+.++.|+.+..
T Consensus 109 dg~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~- 186 (263)
T d1npea_ 109 DGTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA- 186 (263)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred CCceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC-
Confidence 766543333333456788888654 333444433323 3444456555444444344446678999999888877642
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
+.+.|...+.........+.+.. ....+++. +.+|+.. ...+.|...|..+++.+..+..... .....++
T Consensus 187 --~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~ 257 (263)
T d1npea_ 187 --GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGIT 257 (263)
T ss_dssp --TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEE
T ss_pred --CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEE
Confidence 35568888887655544444433 34567665 4555554 4678899999999988877654332 2345666
Q ss_pred EecC
Q 001386 630 FNKN 633 (1088)
Q Consensus 630 ~s~~ 633 (1088)
+.++
T Consensus 258 v~~~ 261 (263)
T d1npea_ 258 IALS 261 (263)
T ss_dssp EECS
T ss_pred EeCC
Confidence 5543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.72 E-value=0.037 Score=61.71 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=47.3
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
|.+.-+|+.+|+.+.+...++ ++..-.++..|..+++|+.||.++.+|..||+.+.++..
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 578889999999888765443 222223456788899999999999999999999998874
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.71 E-value=0.02 Score=61.40 Aligned_cols=249 Identities=12% Similarity=0.061 Sum_probs=139.2
Q ss_pred CceeeeecCCCCeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+..+++||||++++.+-+.+| ++++.|+.+|+.+... +. ......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~------------------i~--~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV------------------LE--RVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE------------------EE--EECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc------------------cc--cccccceEEcCCCCEE
Confidence 4456788999997655554444 6999999999866421 10 1122458999999988
Q ss_pred EEEeCC----------------CEEEEEEccCCCcccceeEeccC--CCCEEEEEecCCCCcEEEEEEe-CCCcEEEE--
Q 001386 412 GVAYSK----------------HIVQLYAYHGGSDARQQLEIDAH--VGNVNDLAFSAPCKQISVITCG-DDKTIKVW-- 470 (1088)
Q Consensus 412 as~~~d----------------g~i~vwd~~~~~~~~~~~~~~~h--~~~v~~~~~s~d~~~l~l~s~s-~d~~i~vw-- 470 (1088)
.....+ ..|..|.+.++..-. ...+... ...+..+..+.|++.+++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 257788887764322 1123333 2346678889999963333332 23344444
Q ss_pred eCCCCc--------eeEEeccCCccEEEEeeeeeCCceEEEEEe---cCCeEEEEECCCCCc---eEEecCCCCceEEEE
Q 001386 471 DAVTGS--------RTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1088)
Q Consensus 471 d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~ 536 (1088)
|+.... ....+.........+.. . ++.+++... .++.|...++..... ...+..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 443221 11222222333332221 1 223333332 245677777765443 223333444455445
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCee
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1088)
++..+.+|+..... ++...|++++..++.......... +.+..+...++...+.... .-.++.-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEEc-CCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 55556666655432 457789999999887765544433 5566665556655544432 336788899988754
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.68 E-value=0.042 Score=61.23 Aligned_cols=383 Identities=11% Similarity=0.054 Sum_probs=191.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCC--------ccE-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1088)
.|..++.++.|.-.|.++|+.+.++.... ..+ ..+++ . +..++.++.|+.+.-.|.++++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~--~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--Y--GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--E--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--e--CCceEEecCCCeEEEecccccceeeeecc
Confidence 46667788899999999999998764211 001 11222 1 23677789999999899998887654332
Q ss_pred CCCc----e--EEEEEc--cCCCEEEEEeeCC---CCceeEEEEeCCCCceeEEEeccccc-------------------
Q 001386 528 PGLG----C--TRMAYS--ANGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1088)
Q Consensus 528 ~~~~----v--~~~~~s--~~g~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1088)
.... . .-..+. ..+..++..+... ...+.|.-+|..+|+.+-.+......
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 1110 0 001111 1233444332211 22456888999999887765432200
Q ss_pred ------------------cccE-EEEEEeCCCCEEEEEeC------------------------CCcEEEEEcCCCeeeE
Q 001386 578 ------------------HNSV-SVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 578 ------------------~~~v-~~~~~~~~~~~l~~~s~------------------------dg~i~iwd~~~~~~~~ 614 (1088)
...+ ..+++.+....++.+.. ...+.-.|..+|+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 0111 23567777777766531 1246677888999888
Q ss_pred EEeCCCCCCCC-------ceEEEe-cCC---CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccc
Q 001386 615 TIDAGGGLPEN-------PRICFN-KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1088)
Q Consensus 615 ~~~~~~~~~~v-------~~v~~s-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 683 (1088)
.++...+.... .-+.+. .++ ..++..+.++.+.++|..+++.+....................
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~------ 379 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG------ 379 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC------
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccc------
Confidence 77653321100 111121 133 2566777889999999999976654333222222111111000
Q ss_pred cCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
.........+ .....+.. ........|.......-...+++|+...++....+....+|.-
T Consensus 380 ---~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~ 440 (582)
T d1flga_ 380 ---RPVEREGQRP--PLPEPGQK--------------HGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE 440 (582)
T ss_dssp ---CEEECTTCSC--CCCCTTCS--------------SCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred ---cceecccccc--cccccccc--------------ccceEEECCCccCCcccccceecCCCCceeeeccccccccccc
Confidence 0000000000 00000000 0000011111111112224567777666666655544444432
Q ss_pred cCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeE
Q 001386 764 PRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTAT 843 (1088)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 843 (1088)
..... .+. .........-+-. -...|.|.-+|+.+|+.+.....+.....
T Consensus 441 ~~~~~--------------~g~------------~~~~~~~~~~~~~----~~~~G~l~AiD~~TG~i~W~~~~~~p~~~ 490 (582)
T d1flga_ 441 EVSYT--------------KGS------------AYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEHLPLWA 490 (582)
T ss_dssp CCCCC--------------TTS------------CCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred ccccc--------------ccc------------cccccCccccccc----cCCCCeEEEEcCCCCcEEeecCCCCCCcc
Confidence 11100 000 0000011110000 00136788899999998877764432221
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCC-eeEEEECCCCC-EEEEE
Q 001386 844 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-ILVSS 900 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~-~las~ 900 (1088)
. .++. .+.++++|+.||.++-+|.++|+.+.+++-..+. -.-+.+..||+ |++..
T Consensus 491 g-~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 491 G-VLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp C-CEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred c-eeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 1 1222 4568888999999999999999999887642221 11256677884 55544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.64 E-value=0.013 Score=61.99 Aligned_cols=124 Identities=10% Similarity=0.173 Sum_probs=77.5
Q ss_pred ceEEEEEccCCCEEEEEeeCCC-------CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-CcE
Q 001386 531 GCTRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVI 602 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g~i 602 (1088)
.+...+...+|+.++.++...+ ....+.+||+.+++..........+.......++.+++..++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 3344455667888888774321 12247799999876543222111111223456788999988887654 689
Q ss_pred EEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC------CcEEEEeCCCCC
Q 001386 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESN 655 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~ 655 (1088)
.+||..+......-..... ..-..++..+||++++.++.+ ..+.+||..++.
T Consensus 101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 9999988766443222211 123567788899999998753 368899988763
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.60 E-value=0.016 Score=64.69 Aligned_cols=187 Identities=12% Similarity=0.049 Sum_probs=104.8
Q ss_pred cEEEEEcCCceeEEEecCCCC---------CeEEEEEcCCCC---cEEEEEeCCCeEEEEEcCCceeeeeeccccC----
Q 001386 820 VISLYIVMTFKTILTIMPPSP---------TATSLAFNPHDN---NVIAIGMDDSTILIYNARSSEVISKLEGHSK---- 883 (1088)
Q Consensus 820 ~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~sp~d~---~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~---- 883 (1088)
.|.-.|.++++....++.... ......... ++ ..++.++.+|.++++|..+|+.+........
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~-~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~ 362 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceec-CCCceeeeeeccccceeEEecccccccccccccccccccc
Confidence 366677788877766543211 112222222 22 4678889999999999999988754432110
Q ss_pred -------------------------------CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 884 -------------------------------RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 884 -------------------------------~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
.-...+++|+..+++....+....++.....+... ...+.....
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g 437 (573)
T d1kb0a2 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ-----AGPGKPQSG 437 (573)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC-----CCTTSTTGG
T ss_pred ccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc-----CCCCccccc
Confidence 01124677777777766666655555554422110 000000000
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 933 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
.......+ +++.-.....-+.+.-||..+|+.+.+...+. +...=..+-.|.+|++|+.||.++.+|..+|+.+.++
T Consensus 438 ~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~--p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~ 514 (573)
T d1kb0a2 438 TGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (573)
T ss_dssp GTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC--CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence 00000000 00000000112578899999999887754332 2222234557889999999999999999999999888
Q ss_pred ccc
Q 001386 1013 LST 1015 (1088)
Q Consensus 1013 ~~~ 1015 (1088)
...
T Consensus 515 ~~~ 517 (573)
T d1kb0a2 515 PTG 517 (573)
T ss_dssp ECS
T ss_pred ECC
Confidence 743
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.57 E-value=0.0089 Score=66.54 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=117.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCc----------cE-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
.++.++.++.|.-.|.++|+.+.++..... .+ ..++. .+..++.+..|+.|.-.|..+++.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce----eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 355667788899999999999988642211 00 01111 1246888899999999999988887765
Q ss_pred cCCCC-ceEEEEEcc--CCCEEEEEee--CCCCceeEEEEeCCCCceeEEEeccccc-----------------------
Q 001386 526 DAPGL-GCTRMAYSA--NGRRLFSCGT--SKEGESFLVEWNESEGAIKRTYQGLQLQ----------------------- 577 (1088)
Q Consensus 526 ~~~~~-~v~~~~~s~--~g~~l~~~~~--~~~~~~~i~iwd~~~~~~~~~~~~~~~~----------------------- 577 (1088)
..... ....+.-.| .+..++.+.. .....+.|.-+|.++|+.+-.+......
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 43321 111111111 1223333322 1123467999999999998877532100
Q ss_pred ----ccc-EEEEEEeCCCCEEEEEeC-------------------CCcEEEEEcCCCeeeEEEeCCCCCC-------CCc
Q 001386 578 ----HNS-VSVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGLP-------ENP 626 (1088)
Q Consensus 578 ----~~~-v~~~~~~~~~~~l~~~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~-------~v~ 626 (1088)
... -..+++.+....++.+.. ...|.-.|..+|+....++...+.. ...
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 011 123566777776665431 2346777889999887776533210 001
Q ss_pred eEEEecCC---CEEEEEeCCCcEEEEeCCCCCccccc
Q 001386 627 RICFNKNG---TLLAVIANENRIKILETPESNSVDAA 660 (1088)
Q Consensus 627 ~v~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1088)
-+....++ ..++.+..+|.+.++|..+++.+...
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~ 340 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCcccccc
Confidence 12223344 35677888999999999999876543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.56 E-value=0.018 Score=64.16 Aligned_cols=383 Identities=11% Similarity=0.062 Sum_probs=193.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCC----------ccE-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG----------APV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
.++.++.++.|.-+|.++|+.+.++.... ..+ ..+.+ . + ..++.++.|+.+.-.|..+++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~--~-~-~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--W-K-GKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE--E-C-CcEEEEecccceeeeccccccceecc
Confidence 35667778899999999999998774211 011 11111 1 1 25777888999988898888877654
Q ss_pred cCCCCc--eEEEEEcc--CCCEEEEEeeC--CCCceeEEEEeCCCCceeEEEeccccc----------------------
Q 001386 526 DAPGLG--CTRMAYSA--NGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQLQ---------------------- 577 (1088)
Q Consensus 526 ~~~~~~--v~~~~~s~--~g~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 577 (1088)
...... -..+.-.| -+..++++... ....+.|+-+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 332111 00111111 13334443321 223567999999999998776432100
Q ss_pred ------cccE-EEEEEeCCCCEEEEEeC-------------------CCcEEEEEcCCCeeeEEEeCCCCC-------CC
Q 001386 578 ------HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------PE 624 (1088)
Q Consensus 578 ------~~~v-~~~~~~~~~~~l~~~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~ 624 (1088)
...+ ...++.++...++.+.. ...|.-.|..+++.....+...+. ..
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 0111 23456666666655331 124666788888877766543211 11
Q ss_pred CceEEEecCC---CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcc
Q 001386 625 NPRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1088)
Q Consensus 625 v~~v~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 701 (1088)
........++ ..++.++.+|.+.++|..+++.+........... ..+... +..
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~-~~~~~~----------------------~~~- 370 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-SGYDKH----------------------GKP- 370 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-EEECTT----------------------SCE-
T ss_pred eeecceecCCCceeeeeeccccceeEEeccccccccccccccccccc-cccccc----------------------cce-
Confidence 1122223333 3577788899999999999987654432111100 000000 000
Q ss_pred cccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCC
Q 001386 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQP 781 (1088)
Q Consensus 702 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 781 (1088)
+..... ..........+.......-...+++|+...++....+....++...........
T Consensus 371 ----------~~~~~~-~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~--------- 430 (573)
T d1kb0a2 371 ----------IGIAAA-RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAG--------- 430 (573)
T ss_dssp ----------EECGGG-GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCC---------
T ss_pred ----------eeeeec-cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCC---------
Confidence 000000 000000111111111111224578888888887777766555543322110000
Q ss_pred CCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCe-EEEEEcCCCCcEEEEEeC
Q 001386 782 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMD 860 (1088)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~d~~~lasg~~ 860 (1088)
.+..... ..... ..+ +.+.-.....-|.+.-||+.+++.+.......... ..++. .+.++++|+.
T Consensus 431 -~~~~~~g-------~~~~~--~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF~G~~ 496 (573)
T d1kb0a2 431 -PGKPQSG-------TGWNT--AKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVFQGTA 496 (573)
T ss_dssp -TTSTTGG-------GTCCC--CEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECT
T ss_pred -CCccccc-------ccccc--ccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEEEEECC
Confidence 0000000 00000 000 00000000012568889999999888776433211 22333 4568888999
Q ss_pred CCeEEEEEcCCceeeeeeccccCCe-eEEEECCCCC-EEEEEe
Q 001386 861 DSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 901 (1088)
Q Consensus 861 dg~i~lwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~las~s 901 (1088)
||.++.+|..+|+.+.++.-..+.. .-+.|..||+ |++..+
T Consensus 497 dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 497 DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (573)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 9999999999999998775422211 1145556785 444443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.47 E-value=0.0092 Score=61.08 Aligned_cols=200 Identities=12% Similarity=0.135 Sum_probs=125.2
Q ss_pred EEEecC---CCCcEEEEEEeCCCcEEEEeCCCCceeEEecc-CCccEEEEeeeeeCCceEEEEEecCC------------
Q 001386 446 DLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDG------------ 509 (1088)
Q Consensus 446 ~~~~s~---d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg------------ 509 (1088)
.++|.. ||++ +++.-..+.+|-+-|+++.++.+.+.. ....+..+.....++..+++.++.+.
T Consensus 89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 455654 7885 566667888999999999998664432 34455666665566667888776633
Q ss_pred ------eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC-----------CceeEEEE------------
Q 001386 510 ------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-----------GESFLVEW------------ 560 (1088)
Q Consensus 510 ------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~-----------~~~~i~iw------------ 560 (1088)
.+.++|.++.+......... ....+.++++|+++++.+.+.+ ....+.++
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 35678888777665554332 4567899999999998774321 11223333
Q ss_pred -----------eCCCC---ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeee--------E--E
Q 001386 561 -----------NESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLL--------T--T 615 (1088)
Q Consensus 561 -----------d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~--------~--~ 615 (1088)
|.... ..++.+... .....+.++|||+++++++ .+.++.|+|++.-..+ . .
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPVp----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~ 322 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 322 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred CcEEeCCceeecccccCCcceeEEEecC----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence 32211 112222221 2356688999999998865 6889999998642111 0 0
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
-...-+. .-...+|+..|.-..+..-|..|.-|++.
T Consensus 323 ~e~elgl-gPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 323 AEPELGL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp ECCBCCS-CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred eecccCc-CccccccCCCceEEEEeeccceEEEEecc
Confidence 1111111 12457888888766666689999999985
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.43 E-value=0.059 Score=51.89 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=144.9
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
+.-.+|..+ ++|.=+ ..++.|+|+++.++++... ...+|..=.|-. .+.|+..+ +.
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis-~~~L~lVT-~t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWIS-LNTVALVT-DN 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESS-SSEEEEEC-SS
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecC-CCEEEEEc-CC
Confidence 344578777 566544 4689999999999887643 235677777874 44566554 45
Q ss_pred EEEEEEccCCCcccceeEeccCC----CCEEEEEecCCCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 419 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~s-----~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
.|+-|++++.. .+.+.+..|. ..|..-..+++.+++.|+.-+ -.|.+.+|..+.+ .-+.++||.+...
T Consensus 123 aVYHW~~~g~s--~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~ 199 (327)
T d1utca2 123 AVYHWSMEGES--QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 199 (327)
T ss_dssp EEEEEESSSSC--CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred ceEEEcccCCC--CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeE
Confidence 69999996543 2333455554 357777888999963332211 2356788986554 4567888877766
Q ss_pred EEeeeeeCCce-EEEEEe---cCCeEEEEECCCCCc---e-----EEecC----CCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 490 SLCPHAKENIH-FIFSIS---VDGKIKAWLYDSLGA---R-----VDYDA----PGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 490 ~~~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~~~---~-----~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
.+.+....... .++.+. ..+.+++-++..... . ..+.. .+.-..++..|+.-..++..+.
T Consensus 200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---- 275 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 275 (327)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----
Confidence 66553332222 222222 236788888865321 1 11111 1223457778887777777764
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEE
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1088)
.|.++++|+.++.++..-+-.. ..|...+-..+..-+++...+|.|.
T Consensus 276 ~G~i~lyDleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 276 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CcEEEEEEcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence 6789999999999987766555 6666666666666666666666654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.098 Score=51.25 Aligned_cols=234 Identities=9% Similarity=-0.053 Sum_probs=141.5
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEEccCCCccccee
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQL 435 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~-~dg~i~vwd~~~~~~~~~~~ 435 (1088)
..|+-.++.+..... +......+.+++|.+..+.|.-.. .++.|..-++..........
T Consensus 10 ~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~ 69 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (266)
T ss_dssp SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE
Confidence 458888887654322 222445678999999877776654 55667776665432111111
Q ss_pred -EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEE-ecCCeEEE
Q 001386 436 -EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKA 513 (1088)
Q Consensus 436 -~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~i 513 (1088)
.+......+..+++.+-+.. +.++-...+.|.+.++........+.........+++++. .|.++.+. +..+.|..
T Consensus 70 ~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~~~~~~I~r 147 (266)
T d1ijqa1 70 TVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKK 147 (266)
T ss_dssp EEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEE
T ss_pred EEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEeccCCCcceeE
Confidence 12233345678888877775 3445566788999998876655555555566788888654 34444443 23456777
Q ss_pred EECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE
Q 001386 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 593 (1088)
.+++...........-.....+++.+.++.|+.+.. ....|...++............. .......+++. +.+|
T Consensus 148 ~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~lav~--~~~l 221 (266)
T d1ijqa1 148 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKV 221 (266)
T ss_dssp EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEE
T ss_pred eccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCC-cccccEEEEEE--CCEE
Confidence 777665555444444456788999999988887742 24568888886554433333322 11335566665 3455
Q ss_pred EEE-eCCCcEEEEEcCCCeeeEEEeC
Q 001386 594 LAA-GDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 594 ~~~-s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
+.+ ..++.|...+..+++....+..
T Consensus 222 y~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 222 FWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEEECCCCeEEEEECCCCcceEEEEc
Confidence 544 4667888888878776666553
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.24 E-value=0.018 Score=64.00 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=105.7
Q ss_pred CcEEEEeCCCCceeEEeccCCccEEEE-------eeeeeCCc---eEEEEEecCCeEEEEECCCCCceEEecCCC-----
Q 001386 465 KTIKVWDAVTGSRTYSFEGHGAPVYSL-------CPHAKENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPG----- 529 (1088)
Q Consensus 465 ~~i~vwd~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----- 529 (1088)
..+.-.|+++|+.+..+......+... .+....++ ..++.++.+|.+.+.|.++++.+.......
T Consensus 272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~ 351 (571)
T d2ad6a1 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence 457788999999987776432221110 01111122 257788899999999988887654211100
Q ss_pred --------------------------------C--ceEEEEEccCCCEEEEEeeCC------------------------
Q 001386 530 --------------------------------L--GCTRMAYSANGRRLFSCGTSK------------------------ 551 (1088)
Q Consensus 530 --------------------------------~--~v~~~~~s~~g~~l~~~~~~~------------------------ 551 (1088)
+ .-...+++|+...++......
T Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (571)
T d2ad6a1 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence 0 011357778777776543210
Q ss_pred ---------CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCC
Q 001386 552 ---------EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1088)
Q Consensus 552 ---------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1088)
...+.|.-+|+.+|+.+-...... ...+-.....+..+++++.||.++.+|.++|+.+..++.....
T Consensus 432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~----~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~ 507 (571)
T d2ad6a1 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccccCCcccCCcccEEEeccCCCceeeEcCCCC----CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence 112568888999998876654322 1111112335678888999999999999999999999876543
Q ss_pred CCCceEEEecCCC-EEEEEe
Q 001386 623 PENPRICFNKNGT-LLAVIA 641 (1088)
Q Consensus 623 ~~v~~v~~s~~~~-~l~~~~ 641 (1088)
.-.-+.|..||+ ++++..
T Consensus 508 -~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 508 -IGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp -CSCCEEEEETTEEEEEEEE
T ss_pred -eecceEEEECCEEEEEEEe
Confidence 234477777886 444443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.19 E-value=0.068 Score=57.05 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=134.1
Q ss_pred CCCeeEEEEecCCCEEEEEe--CC----cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC----------
Q 001386 798 QEAVPCFALSKNDAYLFSAS--GG----VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---------- 861 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~--dg----~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---------- 861 (1088)
.-.+..+++|||++++|.+- +| .++++|+.+++.+.... .......++|++ |++.|+....+
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred cceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence 33455678999999999774 33 49999999998765321 111225688999 67766654322
Q ss_pred ------CeEEEEEcCCcee--eeeecc--ccCCeeEEEECCCCCEEEEEe---CCCcEEEE--EcCCCceee---eeeee
Q 001386 862 ------STILIYNARSSEV--ISKLEG--HSKRVTGLVFSDALNILVSSG---GDAQIFVW--DVDGWGIQT---CRSLQ 923 (1088)
Q Consensus 862 ------g~i~lwd~~~~~~--~~~l~~--h~~~V~~l~~s~dg~~las~s---~Dg~i~iw--d~~~~~~~~---~~~~~ 923 (1088)
..|..+.+.+... ...+.. ....+..+..+.|+++++... .+....+| ++....... .....
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 281 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence 2688888877532 233333 233466788899999976433 23344455 443321100 00011
Q ss_pred cCCCCccCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCccee--eeeeecCCCcCEEEEEEeeCCCEEEEEe-CCC
Q 001386 924 TPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDG 996 (1088)
Q Consensus 924 ~~~~~~~~~~~v~~~~fs~dg~~l~~~~----d~~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg 996 (1088)
...... .........++.+++.+. ++.|...++..... ...+...+...+..-.++..+.+|+... .++
T Consensus 282 ~~~~~~----~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~ 357 (430)
T d1qfma1 282 LIDNFE----GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (430)
T ss_dssp EECSSS----SCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eecccc----cceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence 111111 112223333444444442 35677777775532 2344545555566556666666666554 454
Q ss_pred --cEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC----CcEEEEeCCCCC
Q 001386 997 --TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN----GEVYVIEPNEPG 1060 (1088)
Q Consensus 997 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d----g~v~~w~l~~~~ 1060 (1088)
.|+++++.++.......+ +.+ ....+...+ +...+.....+ .+++.+|+...+
T Consensus 358 ~~~l~v~~~~~~~~~~~~~~----~~~------sv~~~~~~~-~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 358 KNTLQLHDLATGALLKIFPL----EVG------SVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEEEEEETTTCCEEEEECC----CSS------EEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EeEEEEEECCCCcEEEecCC----CCc------eEeeccCCC-CCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 588899998876544321 111 112234445 33344444334 588888887654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.10 E-value=0.031 Score=62.34 Aligned_cols=269 Identities=15% Similarity=0.117 Sum_probs=154.8
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--CCCEEEEEe------CCCEE
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY------SKHIV 420 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--dg~~las~~------~dg~i 420 (1088)
++..++.|+.+.-.|..||+.+..+.. ..... ...++ -+| -+..++++. ..|.|
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~~~~-------~d~~~--------~~~~t---~~P~v~~~~vivg~~~~e~~~~G~v 184 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWKVEN-------SDIKV--------GSTLT---IAPYVVKDKVIIGSSGAELGVRGYL 184 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEEC-------CCGGG--------TCBCC---SCCEEETTEEEECCBCGGGTCCCEE
T ss_pred EEEEEeCCCCeEeeccccCceeccccc-------ccccc--------ccccc---cCCcEECCeEEEeeccccccccCce
Confidence 467788899999999999987754211 10000 00010 011 134455543 24889
Q ss_pred EEEEccCCCcccceeEec-----------------------------------cCCCCEEEEEecCCCCcEEEEEEeC--
Q 001386 421 QLYAYHGGSDARQQLEID-----------------------------------AHVGNVNDLAFSAPCKQISVITCGD-- 463 (1088)
Q Consensus 421 ~vwd~~~~~~~~~~~~~~-----------------------------------~h~~~v~~~~~s~d~~~l~l~s~s~-- 463 (1088)
+-+|+.+|+.+-...... +-...-..+++.+....+++.++..
T Consensus 185 ~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p 264 (596)
T d1w6sa_ 185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP 264 (596)
T ss_dssp EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred EEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccc
Confidence 999999998764322211 0001122345556655333333321
Q ss_pred ------------CCcEEEEeCCCCceeEEecc--CCcc-------EEEEeeeeeCCc---eEEEEEecCCeEEEEECCCC
Q 001386 464 ------------DKTIKVWDAVTGSRTYSFEG--HGAP-------VYSLCPHAKENI---HFIFSISVDGKIKAWLYDSL 519 (1088)
Q Consensus 464 ------------d~~i~vwd~~~~~~~~~~~~--~~~~-------v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~ 519 (1088)
...|.-.|+++|+.+..++. |... ..-+. .+..+| ..++.+..+|.+.++|..++
T Consensus 265 ~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d-~~~~~G~~~~~v~~~~k~G~~~vlDr~tG 343 (596)
T d1w6sa_ 265 WNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSE-QKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (596)
T ss_dssp SCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEE-EECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccccccccccccceeccccCCccccceeeee-ccccccccccceeccccccceeeecCCCC
Confidence 34577889999999876643 2211 11111 012232 46888899999999998888
Q ss_pred CceEEecCCC-------------C--------------------------ceEEEEEccCCCEEEEEeeCC---------
Q 001386 520 GARVDYDAPG-------------L--------------------------GCTRMAYSANGRRLFSCGTSK--------- 551 (1088)
Q Consensus 520 ~~~~~~~~~~-------------~--------------------------~v~~~~~s~~g~~l~~~~~~~--------- 551 (1088)
+.+....... . .-..++++|+..+++......
T Consensus 344 ~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~ 423 (596)
T d1w6sa_ 344 ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML 423 (596)
T ss_dssp CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC
T ss_pred ceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccc
Confidence 7654321100 0 012346677766665543210
Q ss_pred --------------------------CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001386 552 --------------------------EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 552 --------------------------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1088)
...+.|.-||+.+|+.+-...... ....-.++..+..++.|+.||.++.+
T Consensus 424 ~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~----~~~gg~lsTagglVF~G~~Dg~l~A~ 499 (596)
T d1w6sa_ 424 PYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKAR 499 (596)
T ss_dssp CCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCC----CCccceeEecCCEEEEECCCCeEEEE
Confidence 112568888999998776543322 22222233457888899999999999
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEEecCCC-EEEEEe
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIA 641 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~ 641 (1088)
|..+|+.+..+...... .-.-+.|..||+ ++++..
T Consensus 500 Da~TGe~LW~~~~~~~~-~a~P~tY~~dGkQYvav~~ 535 (596)
T d1w6sa_ 500 DSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQYVAIYY 535 (596)
T ss_dssp ETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEEEEE
T ss_pred ECCCCcEeeEEECCCCc-ccCCeEEEECCEEEEEEEe
Confidence 99999999999876543 234477777886 444443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.04 E-value=0.16 Score=48.90 Aligned_cols=259 Identities=10% Similarity=0.112 Sum_probs=141.2
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
+...+.+.|+..+....+..- ...+.-.+|..+.++.-+ ..++.+||+++.+.++....... |.--.|-.
T Consensus 43 ~~~~VvIidl~n~~~~~Rrpi------~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWkWis 112 (327)
T d1utca2 43 EQAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWIS 112 (327)
T ss_dssp TEEEEEEEETTSTTSCEEEEC------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEESS
T ss_pred CCceEEEEECCCCCcceeccc------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEEecC
Confidence 356789999987654332221 123345678887777655 56899999999999999887643 55555654
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
+ +.|+..+. ..|+-|+++..... +++
T Consensus 113 ~-~~L~lVT~-taVYHW~~~g~s~P----------------------------------------------------~k~ 138 (327)
T d1utca2 113 L-NTVALVTD-NAVYHWSMEGESQP----------------------------------------------------VKM 138 (327)
T ss_dssp S-SEEEEECS-SEEEEEESSSSCCC----------------------------------------------------EEE
T ss_pred C-CEEEEEcC-CceEEEcccCCCCc----------------------------------------------------hhh
Confidence 4 45666654 48999998532111 111
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecCCceEEEec-------cccceEEEEccCCCCCCCCCCCCcccCCCCCC
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-------SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGP 785 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1088)
+|... ......|-....+++++.++..+ -.|.+.+|..+.... ..-.|.
T Consensus 139 fdR~~-------------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-----------Q~ieGh 194 (327)
T d1utca2 139 FDRHS-------------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----------QPIEGH 194 (327)
T ss_dssp EECCG-------------GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-----------EEECCS
T ss_pred hhhcc-------------cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-----------ccccce
Confidence 11000 00122333444444444443222 126677777654322 111111
Q ss_pred --cceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCce--------eEEEe-cC---CCCCeEEEEEcCCC
Q 001386 786 --QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK--------TILTI-MP---PSPTATSLAFNPHD 851 (1088)
Q Consensus 786 --~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~--------~~~~~-~~---~~~~i~~l~~sp~d 851 (1088)
++....+.+..+...+ ++|...+ ...++++|.++.+.. ....+ -. ..+-..++..|+ .
T Consensus 195 aa~F~~~~~~g~~~~~~l--f~fa~r~-----~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-k 266 (327)
T d1utca2 195 AASFAQFKMEGNAEESTL--FCFAVRG-----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-K 266 (327)
T ss_dssp EEEEEEECCTTCSSCEEE--EEEEEEE-----TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-T
T ss_pred eeeeEEEEcCCCCCCceE--EEEEECC-----CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-c
Confidence 1222222221121222 2221110 013678999886521 11111 11 234567888888 6
Q ss_pred CcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEE
Q 001386 852 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 907 (1088)
Q Consensus 852 ~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~ 907 (1088)
-.++..-+.-|.|++||+.++.++..-+-....|-..+-..+..-++....+|.|.
T Consensus 267 ygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 267 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 67888899999999999999999876655555555444444444444455666543
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.63 E-value=0.0007 Score=49.78 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh--HHHHHHHhcCccHHHHHHhhcc
Q 001386 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS 59 (1088)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1088)
++|+.+-|++||..+||.+++.+|++|..++++ ...-...+|+-+|..++.+=.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 578999999999999999999999999988764 5566667888888888776544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.67 E-value=1 Score=45.26 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=101.6
Q ss_pred EEEEcCCCCcEEEEEe------------CCCeEEEEEcCCcee-eeeeccc-------cCCeeEEEE--CCCCCE-EEEE
Q 001386 844 SLAFNPHDNNVIAIGM------------DDSTILIYNARSSEV-ISKLEGH-------SKRVTGLVF--SDALNI-LVSS 900 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~------------~dg~i~lwd~~~~~~-~~~l~~h-------~~~V~~l~~--s~dg~~-las~ 900 (1088)
.++..| ++..+++++ ..|.|.++|+.+.+. ...+... .-....+.+ .+||+. |++.
T Consensus 39 Di~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 39 DLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp EEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred eEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 466667 565554432 248999999976532 1121111 112233333 456663 5555
Q ss_pred e---CCCcEEEEEcCCCc--eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe----------------CCeEEEEE
Q 001386 901 G---GDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----------------ETHLAIYE 959 (1088)
Q Consensus 901 s---~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~----------------d~~i~vwd 959 (1088)
. ...+|.+|++.... .....++....- .....+++..+|.++++-. -....+|.
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~-----~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~ 192 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLL-----PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 192 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTC-----SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccc-----cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence 3 45678888886543 222233322211 2478999999999888821 12344554
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCC
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1038 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d 1038 (1088)
...++.... . ..-.....+++|||+++|+++. ..+.|++|++.....+...... .++. .+=.+.+.+.+
T Consensus 193 ~~~~~~~~~-~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~-------~pDNi~~d~~~ 262 (340)
T d1v04a_ 193 YSPNDVRVV-A-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDT-------LVDNISVDPVT 262 (340)
T ss_dssp ECSSCEEEE-E-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSS-------EEEEEEECTTT
T ss_pred EcCCceEEE-c-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCC-------CCCccEEecCC
Confidence 444443221 2 2245688999999999876655 5688999998755433222211 1111 23346676645
Q ss_pred CCEEEEE
Q 001386 1039 PTQFAVG 1045 (1088)
Q Consensus 1039 ~~~l~~~ 1045 (1088)
|.+.+++
T Consensus 263 g~lwva~ 269 (340)
T d1v04a_ 263 GDLWVGC 269 (340)
T ss_dssp CCEEEEE
T ss_pred CEEEEEE
Confidence 5555544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=2.2 Score=43.13 Aligned_cols=183 Identities=10% Similarity=0.082 Sum_probs=107.6
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCc-----------eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTF-----------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
....-+++++...+++.|+...+.|..+..- ...... .-..|..++|+. | .|++. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence 4466789999888898888777888774311 111111 123689999986 3 35544 45668888
Q ss_pred EcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 868 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 868 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
+..+-........-..++..+.++|. .++....++.+.++++..++..... .... .....+.+.+++|++.|+.+
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~--~~v~-~~~~~~~~~~v~ws~kgkq~ 185 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA--QNVT-SFDVTNSQLAVLLKDRSFQS 185 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE--ESEE-EEEECSSEEEEEETTSCEEE
T ss_pred EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc--CCcc-eEEecCCceEEEEeCCcEEE
Confidence 87664333333334466888888875 4666778899999999987532211 0000 00111357888898888888
Q ss_pred EEEeCCeEEEE-EcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 948 LLVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 948 ~~~~d~~i~vw-d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
+++..+...+- ++.....+.. .......|.++.|-.+..++++-+
T Consensus 186 v~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 186 FAWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EEEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence 88754433321 1111111110 011245688899887777766553
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.03 E-value=1.9 Score=38.36 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=99.3
Q ss_pred EEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee--eeeccc-------cCCeeEEEE
Q 001386 821 ISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGH-------SKRVTGLVF 890 (1088)
Q Consensus 821 i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~--~~l~~h-------~~~V~~l~~ 890 (1088)
|.+-++.....-..+.... -.|.++++. |.+.+.+|+......+|-++.|++. ..+.+. ..-|..+.+
T Consensus 84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~ 161 (313)
T d2hu7a1 84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF 161 (313)
T ss_dssp EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence 4444544222223333333 467777775 6789999999999999999988753 333322 122333322
Q ss_pred -CCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE----eCCeEEEEEcCcce
Q 001386 891 -SDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELT 964 (1088)
Q Consensus 891 -s~dg~~las~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~----~d~~i~vwd~~~~~ 964 (1088)
.+..+-+.++.- .|.++|++-..| .++....+++.+. ++. .+....-+|.++++
T Consensus 162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ 221 (313)
T d2hu7a1 162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS 221 (313)
T ss_dssp EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence 223233444443 555555555442 4677778888777 432 22233355888777
Q ss_pred eeeeeecCC------CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 965 CLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 965 ~~~~~~~~h------~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.-+.-+++. .-.|+-+-+.||+++++.+-.||.-+++. +|+.+
T Consensus 222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~i 270 (313)
T d2hu7a1 222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERV 270 (313)
T ss_dssp EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEE
T ss_pred eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEe
Confidence 655434332 45677788999999989999999998885 44443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.97 E-value=3.3 Score=43.31 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=61.1
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEE--Eec------CCCCCeEEEEEcCC---CCcEEEEEeC------
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL--TIM------PPSPTATSLAFNPH---DNNVIAIGMD------ 860 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~--~~~------~~~~~i~~l~~sp~---d~~~lasg~~------ 860 (1088)
....+|+|.|||+++++-. .|.|++++..+++... .+. .-......++|+|+ ++.+.++.+.
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 4678999999999999885 7999999887765433 221 11246688999983 2333332210
Q ss_pred C----C--eEEEEEcCCce--------eeeee---ccccCCeeEEEECCCCCEEEEEeC
Q 001386 861 D----S--TILIYNARSSE--------VISKL---EGHSKRVTGLVFSDALNILVSSGG 902 (1088)
Q Consensus 861 d----g--~i~lwd~~~~~--------~~~~l---~~h~~~V~~l~~s~dg~~las~s~ 902 (1088)
+ + .+..+...... .+..+ ..|. ...|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence 1 1 23333332211 11111 1244 478999999998887764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.79 E-value=1.9 Score=45.37 Aligned_cols=112 Identities=11% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC---CCEEEE--Ee------
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLL--VH------ 951 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d---g~~l~~--~~------ 951 (1088)
...++|+|.|||++|++--..|.|++++..+++......+...............++|+|+ ..++.. +.
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 4578999999999998765579999998887664432222111111111246789999986 333333 11
Q ss_pred C----Ce--EEEEEcCcce-------ee-eeeecCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 952 E----TH--LAIYEAEELT-------CL-KQWFPISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 952 d----~~--i~vwd~~~~~-------~~-~~~~~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
+ +. +..+...... .+ .............++|.|||.+.++.++
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 11 3333322211 11 1111122345678999999987776654
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.064 Score=46.40 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=51.9
Q ss_pred ccchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhccccccccccccc
Q 001386 68 YSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSK 132 (1088)
Q Consensus 68 ~~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 132 (1088)
+.. ++|.++-+.||||+.+|..++|..|+++.-..+.....+.+++|..+....++.+++....
T Consensus 42 L~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~ 105 (149)
T d2nxpa1 42 LSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLD 105 (149)
T ss_dssp HGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGG
T ss_pred HHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHH
Confidence 344 9999999999999999999999999998655555556788889998888877776665444
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.47 E-value=5.7 Score=39.38 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=105.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee----eCCceEEEEEec--C--CeEEEEECCCCCc-eEEecC
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSISV--D--GKIKAWLYDSLGA-RVDYDA 527 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~--d--g~i~iwd~~~~~~-~~~~~~ 527 (1088)
+++.....+-|.+||+ .|+.+..+. .+.++.+.... ..+...++.++. + .+|.+|.+..... ...+..
T Consensus 42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 5555566667999997 488887764 35666665432 112223444442 2 3588887764332 222222
Q ss_pred C-------CCceEEEEE--ccC-CCEEEEEeeCCCCceeEEEEeC---CCC----ceeEEEeccccccccEEEEEEeCCC
Q 001386 528 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 528 ~-------~~~v~~~~~--s~~-g~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
. ...++.+|+ ++. |...+.... . ++.+..|.+ ..+ +.++.+.. ...+..|.+.+..
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~ 191 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY 191 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence 1 123566666 664 554444432 2 445666654 333 33444443 2478899999999
Q ss_pred CEEEEEeCCCcEEEEEcCC-----CeeeEEEeCCCCCCCCceEEEec--C--CCEEEEEeCCCcEEEEeCCCC
Q 001386 591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNK--N--GTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~--~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
..|+.+-++..|..++... +..+.......-...+-.++.-. + |-+|++.-.+++..+|+....
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998887776666542 22222222212233455666543 3 334455555789999998754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.39 E-value=5.9 Score=39.30 Aligned_cols=199 Identities=12% Similarity=0.132 Sum_probs=112.3
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcC----C-CCcEEEEEe--CC--CeEEEEEcCC-ceeeee
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP----H-DNNVIAIGM--DD--STILIYNARS-SEVISK 877 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp----~-d~~~lasg~--~d--g~i~lwd~~~-~~~~~~ 877 (1088)
+..+++... .+-|.+||+. |+.+..+. .+.+..+..-. . +..-+++++ .+ .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 445555554 4559999996 77777664 34555444321 0 222344444 22 3688887752 223333
Q ss_pred eccc-------cCCeeEEEE--CCC-CC-EEEEEeCCCcEEEEEcCCCc--eeeeeeeecCCCCccCCCCeEEEEEcCCC
Q 001386 878 LEGH-------SKRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQ 944 (1088)
Q Consensus 878 l~~h-------~~~V~~l~~--s~d-g~-~las~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~fs~dg 944 (1088)
+... ...++.+++ ++. |. +++....+|.+..|.+.... ......++.+... ..+..+++..+.
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde~ 191 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDEY 191 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETTT
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCCC
Confidence 3321 124777777 664 54 45666778999988874321 1222233333222 258899999999
Q ss_pred CEEEEEeCC-eEEEEEcC-----cceeeeeeecCC-CcCEEEEEEe--eCCC-EEEEEe-CCCcEEEEEcCCC-ceEEEe
Q 001386 945 TRFLLVHET-HLAIYEAE-----ELTCLKQWFPIS-SVPISQATFS--CDCR-MVFTSF-VDGTLSIHEASNL-EVQCRI 1012 (1088)
Q Consensus 945 ~~l~~~~d~-~i~vwd~~-----~~~~~~~~~~~h-~~~v~~l~fs--~dg~-~l~s~s-~dg~v~vwd~~~~-~~~~~~ 1012 (1088)
..|.++.++ .+..+++. .+..+.....++ ..-+-.|+.= .++. ||++.+ .+++..|||..+. ..+.++
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 999988554 45555543 122222212222 4566666643 3443 655554 6789999998774 677666
Q ss_pred cc
Q 001386 1013 LS 1014 (1088)
Q Consensus 1013 ~~ 1014 (1088)
..
T Consensus 272 ~i 273 (353)
T d1h6la_ 272 QI 273 (353)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.86 E-value=4 Score=36.24 Aligned_cols=221 Identities=11% Similarity=0.140 Sum_probs=117.2
Q ss_pred CeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001386 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1088)
Q Consensus 347 ~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~ 426 (1088)
..++.++...|.+.++-+..++.++- ...+|....- |.. +-|..+.+-|+.
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkL----------------------tkePI~~~~~-Pk~------~ldfi~f~RDV~ 76 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKL----------------------NREPINSVLD-PHY------GVGRVILVRDVS 76 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEEC----------------------CSSCCSEECE-ECT------TBSEEEEEEECS
T ss_pred CcEEEEEeccceEEEEEEeCCEEEEE----------------------ecccccCcCC-Ccc------CcceEEEEeehh
Confidence 34788888889999999998887652 1122221111 100 112223333444
Q ss_pred CCCccccee-----------EeccCC-CCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee--EEeccC-------C
Q 001386 427 GGSDARQQL-----------EIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--YSFEGH-------G 485 (1088)
Q Consensus 427 ~~~~~~~~~-----------~~~~h~-~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~--~~~~~~-------~ 485 (1088)
.|+..+.+. ++.... -+|.++++ |++. .+.+|+......+|-++.|+.. ..+.+. .
T Consensus 77 kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~y--ddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~ 153 (313)
T d2hu7a1 77 KGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVD--TGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRG 153 (313)
T ss_dssp TTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEEE--CSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEET
T ss_pred cCcceeeEEEEccCCCCeeeEecCCceEEEEEeee--cCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEeccC
Confidence 443322211 122221 34555554 5555 6677777777888888888653 233221 1
Q ss_pred ccEEEEeeeeeCCceEEEEEec-CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.-|..+.+. .++..-++++.. .|.+++++ ...+.++....++..+. ++.-.. -++....-+|+++
T Consensus 154 d~I~G~g~~-~g~~~sfF~adl~SG~lri~t-----------pkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~~s 219 (313)
T d2hu7a1 154 DLIAGLGFF-GGGRVSLFTSNLSSGGLRVFD-----------SGEGSFSSASISPGMKV-TAGLET-AREARLVTVDPRD 219 (313)
T ss_dssp TEEEEEEEE-ETTEEEEEEEETTTEEEEEEC-----------CSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECTTT
T ss_pred CeEEEEeee-cCCcceEEEEecccCCEEEec-----------CCCCcccceeEccCcee-eeccCC-CCceEEEEEeccc
Confidence 222233222 122222333333 55565553 34455666666666665 444332 3344445679887
Q ss_pred CceeEE-Eeccc---cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 565 GAIKRT-YQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 565 ~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
++..+. +.... ...-.|.-+-+.|+++.++.+-.||.-++|. +|+.+..
T Consensus 220 ~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~ 272 (313)
T d2hu7a1 220 GSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA 272 (313)
T ss_dssp CCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred CceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence 765432 11111 0113455566899999989999999999987 4555543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=3.2 Score=40.16 Aligned_cols=223 Identities=11% Similarity=0.045 Sum_probs=105.3
Q ss_pred CcEEEEEcCCce--eEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEEcCCceee--eeeccccCCe
Q 001386 819 GVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARSSEVI--SKLEGHSKRV 885 (1088)
Q Consensus 819 g~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---------g~i~lwd~~~~~~~--~~l~~h~~~V 885 (1088)
..+.+||+.+++ .+..+..+...- +++.. ++++++.|+.. ..+.+||..+.+.. ..+......-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCcccee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 357889988754 322232222222 22222 56677776531 36788888765432 2221111111
Q ss_pred eEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e-----CCe
Q 001386 886 TGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-----ETH 954 (1088)
Q Consensus 886 ~~l~~s~dg~~las~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~-----d~~ 954 (1088)
.++.+ +++.++.++.++. ...++..+............ . ....+...++..++.+ . ...
T Consensus 96 ~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r------~~~~~~~~~~~~~~~GG~~~~~~~~~ 165 (288)
T d1zgka1 96 GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR--R------IGVGVAVLNRLLYAVGGFDGTNRLNS 165 (288)
T ss_dssp EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC--C------BSCEEEEETTEEEEECCBCSSCBCCC
T ss_pred ecccc--ceeeEEecceecccccceeeeeccccCccccccccccc--c------ccceeeeeeecceEecCcccccccce
Confidence 22222 5666665554433 44566666432221111110 0 1111222344455543 2 235
Q ss_pred EEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceEEEeccccccCCCCccccccc
Q 001386 955 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1029 (1088)
Q Consensus 955 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1088)
+..||..+.+..............+ ....+++.++.|+.+ .....+|..+........ .+.. +...
T Consensus 166 ~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~----r~~~ 236 (288)
T d1zgka1 166 AECYYPERNEWRMITAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHR----RSAL 236 (288)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSC----CBSC
T ss_pred EEEeecccccccccccccccccccc-ccceeeeEEEecCccccccccceeeeeecceeeecccC----ccCc----ccce
Confidence 8889988766443322111111112 223356666666544 346677777765432211 1111 1112
Q ss_pred eEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCccccCC
Q 001386 1030 HAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1068 (1088)
Q Consensus 1030 ~~~~~~p~d~~~l~~~~~dg-----~v~~w~l~~~~~~~~~~~~ 1068 (1088)
+++.. ++++++.|+.++ .|.+||+.. .+|...++
T Consensus 237 -~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~ 275 (288)
T d1zgka1 237 -GITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTR 275 (288)
T ss_dssp -EEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEE
T ss_pred -EEEEE--CCEEEEEecCCCCeecceEEEEECCC--CEEEECCC
Confidence 23333 468888888766 377888865 46986644
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=90.32 E-value=0.13 Score=43.33 Aligned_cols=58 Identities=14% Similarity=0.320 Sum_probs=45.3
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhccccccccccc
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELL 130 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 130 (1088)
++|.++-+.||||+.+|..++|..|+++.-.... ...+..++|+.+....+..+++..
T Consensus 27 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~ 84 (131)
T d2j4ba1 27 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFA 84 (131)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHH
Confidence 9999999999999999999999999998544443 245677888887776666655543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.14 E-value=9.8 Score=37.66 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=101.4
Q ss_pred eEEEEECCCCCEEEEEeC------------CCEEEEEEccCCCcccceeEeccCC-----CCEEEEEe--cCCCCcEEEE
Q 001386 399 VNRVVWSPDGSLLGVAYS------------KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAF--SAPCKQISVI 459 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~------------dg~i~vwd~~~~~~~~~~~~~~~h~-----~~v~~~~~--s~d~~~l~l~ 459 (1088)
--.++..|||..+++++. .|.|.++|+.+.+.......+.+.. -....+.. .++|+. .|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEE
Confidence 346888899988877642 4889999998765432221222211 12233333 456664 333
Q ss_pred EE---eCCCcEEEEeCCCCce-e---EEecc-CCccEEEEeeeeeCCceEEEEEec---------------CCeEEEEEC
Q 001386 460 TC---GDDKTIKVWDAVTGSR-T---YSFEG-HGAPVYSLCPHAKENIHFIFSISV---------------DGKIKAWLY 516 (1088)
Q Consensus 460 s~---s~d~~i~vwd~~~~~~-~---~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~ 516 (1088)
+. ....+|.+|++..+.. + .++.. .....+.+++. +++.+++|-.. -+...+|..
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~ 193 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 193 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence 33 2456788888764432 2 22222 12446777764 45667777311 123344444
Q ss_pred CCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE
Q 001386 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1088)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1088)
+........ ..-.....++++||+++|+++... ...|+.|++............. -....-.+.+.+++..+.++
T Consensus 194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~---~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred cCCceEEEc-CCCCccceeEECCCCCEEEEEeCC---CCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEE
Confidence 444433322 223356789999999999888643 4558888876443222211111 02445667776644334443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=8.5 Score=36.81 Aligned_cols=112 Identities=5% Similarity=-0.036 Sum_probs=51.8
Q ss_pred eEEEEEecC-----CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC-CceeEEEEeCCCCceeEEEec
Q 001386 500 HFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 500 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
..++.|+.+ ..+..||....+....-..............+++.++.++.+.. .......+|..+.+....-..
T Consensus 150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (288)
T d1zgka1 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 229 (288)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred cceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCc
Confidence 455555543 34677777654332211111111111122234555555544322 123467788777655432221
Q ss_pred cccccccEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeE
Q 001386 574 LQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLT 614 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~ 614 (1088)
.. ..... +++. .+++.++.|+.++ .+.+||+.+.+...
T Consensus 230 p~-~r~~~-~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 272 (288)
T d1zgka1 230 KH-RRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 272 (288)
T ss_dssp SS-CCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred cC-cccce-EEEE-ECCEEEEEecCCCCeecceEEEEECCCCEEEE
Confidence 11 01111 2222 3567777766543 37788988765433
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.49 E-value=7 Score=39.20 Aligned_cols=136 Identities=7% Similarity=-0.008 Sum_probs=84.1
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
.|..++|+.| .+++..++.+..++..+.............+..+...| ..++....+|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence 5788888755 57777788888888876555444444456688888877 356667789999999998875432211
Q ss_pred c-----ccCCeeEEEECCCCCEEEEEeCCCcEEE-EEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 880 G-----HSKRVTGLVFSDALNILVSSGGDAQIFV-WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 880 ~-----h~~~V~~l~~s~dg~~las~s~Dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
+ -.+.+.+++|++.|..++++..++ ..+ -++.. .............+.++.|-.+..++++
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~--------~~~~~~p~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSL--------PSELEELPVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECC--------CHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCC--------ccccCCCcCCCcceeEEEEecCceEEEE
Confidence 1 235678888888887777764332 111 11111 1111111111125788888877777776
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=80.57 E-value=0.17 Score=42.61 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=49.7
Q ss_pred hhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccccCC------ChHHHHHH
Q 001386 71 KIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSARKNM 144 (1088)
Q Consensus 71 ~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~R~~l 144 (1088)
.++|.++-+.||||+..+. .+|..|+++.-..+.....+..++|+.+....+..+++....+... .+.+-..|
T Consensus 28 ~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s~~lL 106 (134)
T d2j49a1 28 YIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLL 106 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHHHHHH
Confidence 3999999999999998875 6799999885554433334556666666666656555543333222 23444455
Q ss_pred HHHHH
Q 001386 145 MLELK 149 (1088)
Q Consensus 145 ~~~l~ 149 (1088)
+..|+
T Consensus 107 l~fL~ 111 (134)
T d2j49a1 107 LYFLN 111 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
|