Citrus Sinensis ID: 001391
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | 2.2.26 [Sep-21-2011] | |||||||
| A7Z052 | 1124 | WD repeat-containing prot | yes | no | 0.598 | 0.579 | 0.235 | 1e-36 | |
| Q9NNW5 | 1121 | WD repeat-containing prot | yes | no | 0.602 | 0.585 | 0.236 | 2e-36 | |
| Q5RB07 | 1121 | WD repeat-containing prot | yes | no | 0.602 | 0.585 | 0.233 | 1e-35 | |
| Q99ME2 | 1125 | WD repeat-containing prot | yes | no | 0.593 | 0.574 | 0.235 | 3e-32 | |
| Q5XFW6 | 1125 | WD repeat-containing prot | yes | no | 0.598 | 0.578 | 0.24 | 4e-32 | |
| Q08924 | 1013 | Regulator of Ty1 transpos | yes | no | 0.243 | 0.261 | 0.241 | 8e-17 | |
| Q9USZ0 | 984 | Uncharacterized WD repeat | yes | no | 0.181 | 0.200 | 0.268 | 1e-12 | |
| Q09715 | 614 | Transcriptional repressor | no | no | 0.193 | 0.343 | 0.226 | 1e-07 | |
| Q3Y8L7 | 446 | Outer row dynein assembly | N/A | no | 0.072 | 0.177 | 0.351 | 8e-07 | |
| Q6CG48 | 437 | Nuclear distribution prot | no | no | 0.162 | 0.405 | 0.267 | 1e-06 |
| >sp|A7Z052|WDR6_BOVIN WD repeat-containing protein 6 OS=Bos taurus GN=WDR6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 182/773 (23%), Positives = 311/773 (40%), Gaps = 122/773 (15%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G VL+Y L+ G +R + + H + F E + VA FG K
Sbjct: 31 LLAGEGPDVLVYTLDFGGHLRMMKRVQNLLGHYLIHGFRVRPEPNGDLDSEVMVAAFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+++ ++++ + N+S W++D +L+ GN +LA+G N
Sbjct: 91 GLRIVKISWGQGRFRELWRSGLWNMS---------DWIWDARWLE---GNIALALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D + +V +RC L S L GD + L + +G + N+++VW
Sbjct: 137 SVVLYDPVVGCSLQDVPCTDRCTLSSACLIGDTWKELTVVAGAVSNQLLVW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + V R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPAAALTDDK-PVVPDRRVSGHVGVIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS RIW+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRIWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397
+ L+ + H GRGI + ++T G DS I++ HP + F
Sbjct: 288 EILQAFRGHQGRGIRALAAHERQAWVITGGDDSGIRLWHLVG------RGHPGSGVFA-- 339
Query: 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457
S K + S+ ++ + L + T+ G LY L D++ W +
Sbjct: 340 ---LSFK----------SHSRPGVLKAVTLAGSWRVLAVTDAGALY---LYDLEVKCWEQ 383
Query: 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517
+L+ + C LL P P G AL +G+G + +V ++TP + T
Sbjct: 384 LLE-DKRFQSYC--LLEAAPG-PEGF-GLCALANGEGRVKVV----PINTPTAAVDLTLF 434
Query: 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577
G L ++ + + + P G + ++ S + L
Sbjct: 435 PGKVHSL--SWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQR 492
Query: 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHV-------------- 623
F L CGD RG+++L+P DLL D V V
Sbjct: 493 WHTCSAFLPPGDF----LVCGDRRGSVLLYPSRPDLLKDLGVVSKVGAITSAPGAGSGEG 548
Query: 624 -----EVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEF 678
E P++ HG V++++ + + +TG DG Y + + +
Sbjct: 549 EPSLAEWGPMSTLPSLHGKQGVTSVTC-----HGGYVYTTGRDGSY-YQLFVRGGQLQPV 602
Query: 679 IGMKQVKELSLIQSVS--AENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWR 736
+ K + ++ + V A+ N + L GF + +F++W+ + K+ I CGG
Sbjct: 603 LRQKPCRGMNWVAGVRMVADGNMVIL-------GFHANEFVVWSPRSHEKLHIINCGGGH 655
Query: 737 RPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
R S+ D E FAY+KD + ++R + L HGREI
Sbjct: 656 R--SWAFSDT-EAAMAFAYLKDGDVMLYRALGGCTRPHVI---LRESLHGREI 702
|
Enhances the STK11/LKB1-induced cell growth suppression activity. Bos taurus (taxid: 9913) |
| >sp|Q9NNW5|WDR6_HUMAN WD repeat-containing protein 6 OS=Homo sapiens GN=WDR6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 182/770 (23%), Positives = 313/770 (40%), Gaps = 114/770 (14%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G VL+Y L+ G +R + + H + F E + + VA+FG K
Sbjct: 31 LLAGEGPDVLVYSLDFGGHLRMIKRVQNLLGHYLIHGFRVRPEPNGDLDLEAMVAVFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+++ ++++ + N+S W++D +L+ GN +LA+G N
Sbjct: 91 GLRVVKISWGQGHFWELWRSGLWNMS---------DWIWDARWLE---GNIALALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D I+ EV +RC L S L GD + L I +G + N+++VW
Sbjct: 137 SVVLYDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + A + R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPATALADNKPVAPDR-RISGHVGIIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS RIW+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRIWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397
+ L+ + H GRGI + ++T G DS I++ H + + G
Sbjct: 288 EILQAFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLW------------HLVGRGYRG- 334
Query: 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457
+ F + S+ ++ + L L T+ G LY L D++ W +
Sbjct: 335 ---LGVSALCFKSR-----SRPGTLKAVTLAGSWRLLAVTDTGALY---LYDVEVKCWEQ 383
Query: 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517
+L+ + C LL P P G A+ +G+G + +V ++TP + T
Sbjct: 384 LLE-DKHFQSYC--LLEAAPG-PEGF-GLCAMANGEGRVKVV----PINTPTAAVDQTLF 434
Query: 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577
G L ++ + + + P G + ++ S + L
Sbjct: 435 PGKVHSL--SWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQR 492
Query: 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDK------------SVALHVEV 625
F L CGD RG+++LFP LL D V
Sbjct: 493 WHTCSAFLPPGDF----LVCGDRRGSVLLFPSRPGLLKDPGVGGKARAGAGAPVVGSGSS 548
Query: 626 SPLNYFKGAHGISTVSTL----SVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGM 681
N F G +ST+ +L V + + + +TG DG Y + +D + +
Sbjct: 549 GGGNAFTGLGPVSTLPSLHGKQGVTSVTCHGGYVYTTGRDGAY-YQLFVRDGQLQPVLRQ 607
Query: 682 KQVKELSLIQS--VSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPH 739
K + ++ + + + + + L GF + +F++WN + K+ + CGG R
Sbjct: 608 KSCRGMNWLAGLRIVPDGSMVIL-------GFHANEFVVWNPRSHEKLHIVNCGGGHR-- 658
Query: 740 SYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
S+ D E FAY+KD + ++R + L HGREI
Sbjct: 659 SWAFSDT-EAAMAFAYLKDGDVMLYRALGGCTRPHVI---LREGLHGREI 704
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Enhances the STK11/LKB1-induced cell growth suppression activity. Homo sapiens (taxid: 9606) |
| >sp|Q5RB07|WDR6_PONAB WD repeat-containing protein 6 OS=Pongo abelii GN=WDR6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 180/770 (23%), Positives = 311/770 (40%), Gaps = 114/770 (14%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G VL+Y L+ G +R + + H + F E + + VA+FG K
Sbjct: 31 LLAGEGPDVLVYSLDFGGHLRMIKRVQNLLGHYLIHGFRIRPEPNGDLDLEAMVAVFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+++ ++++ + N+S W++D +L+ GN +LA+G N
Sbjct: 91 GLRVVKISWGQGHFRELWRSGLWNMS---------DWIWDARWLE---GNIALALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D I+ EV +RC L S L GD + L I +G + N+++VW
Sbjct: 137 SVVLYDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + A + R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPATALADNKPVAPDR-RISGHVGIIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS RIW+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRIWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397
+ L+ + H GRGI + ++T G DS I++ H + + G
Sbjct: 288 EILQAFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLW------------HLVGRGYRG- 334
Query: 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457
+ F + S+ ++ + L L T+ G LY L D++ W +
Sbjct: 335 ---LGVSALCFKSR-----SRPGTLKAVTLAGSWRLLAVTDTGALY---LYDVEVKRWEQ 383
Query: 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517
+L+ + C LL P P G A+ +G+G + +V ++TP + T
Sbjct: 384 LLE-DKHFQSYC--LLEAAPG-PEGF-GLCAMANGEGRVKVV----PINTPTAAVDRTLF 434
Query: 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577
G L ++ + + + P G + ++ S + L
Sbjct: 435 PGKVHSL--SWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQR 492
Query: 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLND------------KSVALHVEV 625
F L C D RG+++LFP LL D
Sbjct: 493 WHTCSAFLPPGDF----LVCSDRRGSVLLFPSRPGLLKDPGVGGKAGAGAGAPGVGSGSS 548
Query: 626 SPLNYFKGAHGISTVSTL----SVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGM 681
N F G +ST+ +L V + + + +TG DG Y + +D + +
Sbjct: 549 GGGNAFTGLGPVSTLPSLHGKQGVTSVTCHGGYVYTTGRDGAY-YQLFVRDSQLQPVLRQ 607
Query: 682 KQVKELSLIQS--VSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPH 739
K + ++ + + + + + L GF + +F++WN + K+ + CGG R
Sbjct: 608 KSCRGMNWLAGLRIVPDGSMVIL-------GFHANEFVVWNPRSHEKLHIVNCGGGHR-- 658
Query: 740 SYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
S+ D E FAY+KD + ++R + L HGREI
Sbjct: 659 SWAFSDT-EAAMAFAYLKDGDVMLYRALGGCTRPHVI---LREGLHGREI 704
|
Enhances the STK11/LKB1-induced cell growth suppression activity. Pongo abelii (taxid: 9601) |
| >sp|Q99ME2|WDR6_MOUSE WD repeat-containing protein 6 OS=Mus musculus GN=Wdr6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 184/780 (23%), Positives = 313/780 (40%), Gaps = 134/780 (17%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G +L+Y+L+ G +R + + H + F E +A+FG K
Sbjct: 31 LLAGEGPDLLVYNLDLGGHLRMVKRVQNLLGHFLIHGFRVRPEPKGDLDSEAMIAVFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+K+ ++++ S + N+S W++DV +++ GN ++A+G N
Sbjct: 91 GLKVVKVSWGQSHLRELWRSGLWNMS---------DWIWDVRWIE---GNVAVALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D ++ +V +RC L S L GD + L I +G + NE+++W
Sbjct: 137 SVVLYDPVIGCMLQDVPCTDRCTLSSACLVGDTWKELTIVAGAVSNELLIW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + A + R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPATALTDNKPVAPDR-RVSGHVGVIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS R+W+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRLWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG- 396
+ L+ + H GRGI + +VT G DS I++ H + + G
Sbjct: 288 EILQAFRGHRGRGIRAIATHERQAWVVTGGDDSGIRLW------------HLAGRGYPGL 335
Query: 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN 456
S K P S+ ++ + L + T+ G LY L D++ +W
Sbjct: 336 GVSSLSFKSP----------SRPGALKAVTLAGSWRVLAVTDVGSLY---LYDLEVKSWE 382
Query: 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW 516
++L+ + LL P P G AL +G+G +V+VV ++TP
Sbjct: 383 QLLEDNR---FRSYCLLEAAPG-PEGF-GLCALANGEG---LVKVV-PINTP-------- 425
Query: 517 SAGIERQLLG------TYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570
+A +E++L ++ + + + P G + ++ ++ T
Sbjct: 426 TAAVEQKLFQGKVHSLSWALRGYEELLLLASGPGGVIACLEI---------SAAPTGKAI 476
Query: 571 LVAE-----FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDK---SVALH 622
V E C + L CGD RG+++LFP+ L S A+
Sbjct: 477 FVKERCRYLLPPSKQRWHTCSAFLPPGDFLVCGDRRGSVMLFPVRPCLFKKPGAGSKAIT 536
Query: 623 VEVSPLNYFKGAH------GISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESL 676
+P GI VSTL + T + GG YL Y R+S
Sbjct: 537 AAEAPGAGSGSGGSESVPTGIGPVSTLHSLHGKQGVTSVTCHGG-----YL-YSTGRDSS 590
Query: 677 EFIGMKQVKELSLIQSVSAENNSIDLASCNYAA-------GFASTDFIIWNLITEAKVVQ 729
F L + A +A GF + +F++W+ + K+
Sbjct: 591 YFQLFVHGGHLQPVLRQKACRGMNWVAGLRMVPDGSMVILGFHANEFVVWSPRSHEKLHI 650
Query: 730 IPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
+ CGG R S+ D E F Y+KD + ++R + L HGREI
Sbjct: 651 VNCGGGHR--SWAFSDT-EAAMAFTYLKDGEVMLYRALGGCIRPNVI---LREGLHGREI 704
|
Enhances the STK11/LKB1-induced cell growth suppression activity. Mus musculus (taxid: 10090) |
| >sp|Q5XFW6|WDR6_RAT WD repeat-containing protein 6 OS=Rattus norvegicus GN=Wdr6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 186/775 (24%), Positives = 313/775 (40%), Gaps = 124/775 (16%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G +L+Y+L+ G +R + + H + F E +A+FG K
Sbjct: 31 LLAGEGPDLLVYNLDFGGHLRMVKRVQNLLGHYLIHGFRVQPEPKGDLDSEAMIAVFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+++ ++++ S + N+S W++D +L+ GN +LA+G N
Sbjct: 91 GLRVVKISWGQSHLRELWRSGLWNMS---------DWIWDARWLE---GNVALALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D ++ +V +RC L S L GD + L I +G + NE++VW
Sbjct: 137 SVVLYDPVIGCMLQDVPCTDRCTLSSACLIGDTWKELTIVAGAVSNELLVW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + A + R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPATALPDNKPVAPDR-RVSGHVGVIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS RIW+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRIWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV-HQFQAFLPGSLESHPEAKEFNG 396
+ L+ + H GRGI + ++T G DS I++ H PG S
Sbjct: 288 EILQAFRGHQGRGIRAIAAHERQTWVITGGDDSGIRLWHLVGRGYPGLGVSS-------- 339
Query: 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN 456
S K P S+ ++ + L + T+ G LY L D++ W
Sbjct: 340 ----LSFKSP----------SRPGALKAVTLAGSWRVLAVTDVGGLY---LYDLEVKCWE 382
Query: 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW 516
++L+ + C LL P P G AL +G+G +V+VV ++TP +
Sbjct: 383 QLLEDNR-FQSYC--LLEAAPG-PEGF-GLCALANGEG---LVKVV-PINTPTAAVDQNL 433
Query: 517 SAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAE-- 574
G L ++ + + + P G + ++ ++ T V E
Sbjct: 434 FQGKVHSL--SWALRGYEELLLLASGPGGVVACLEI---------SAAPTGKAIFVKERC 482
Query: 575 ---FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSV---ALHVEVSPL 628
C + L CGD RG+++LFP L V A+ +P
Sbjct: 483 RYLLPPSKQRWHTCSAFLPPGDFLVCGDRRGSVLLFPARPCLFKKPGVGPKAITAAEAPQ 542
Query: 629 NYFKGAH------GISTVSTL-------SVAKLRSNQTEIRSTGGDGCICYLEYDKDRES 675
G+ VS+L V + + + STG DG L R
Sbjct: 543 AGSSSGGSESVVTGLGPVSSLHSLHGKQGVTSVTCHGGYVYSTGRDGSYYQLFVHGGRLQ 602
Query: 676 LEFIGMKQVKELSLIQSVS-AENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGG 734
+ K + ++ I + A + S+ GF + +F++W+ + K+ + CGG
Sbjct: 603 -PVLRQKACRGMNWIAGLRMAPDGSM------VVLGFHANEFVVWSPRSHEKLHIVNCGG 655
Query: 735 WRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
R S+ D E FAY+KD + ++R + L HGREI
Sbjct: 656 GHR--SWAFSDT-EAAMAFAYLKDGDVMLYRALGGCIRPNVI---LREGLHGREI 704
|
Enhances the STK11/LKB1-induced cell growth suppression activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q08924|WDR6_YEAST Regulator of Ty1 transposition protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 87/352 (24%)
Query: 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96
++LAG G + +YD + TLI ++FH ++HG+S + +EG ++ +G
Sbjct: 19 YVLAGYGPFIHVYDYHSATLINKCRLFHYNKVHGLSLS----SEG--------KILAYGA 66
Query: 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156
+ V + EL L + E+ V+ + S W+ F N + +
Sbjct: 67 RSVTIVELEDVL------KKESLVDFERINS-----DWITGATF---SFDNLQIYLLTCY 112
Query: 157 NSIRVWDISNSSIILEVHSPERCLLYS--MKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214
N + + D++ + + ER +LYS +K++G + + + +GT+ +I+W +
Sbjct: 113 NKVLICDLNCEVLFRKSLGGERSILYSGIIKVFGP--DKVYVNAGTVMGGVIIWDL---- 166
Query: 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274
+ + L+GHEGSIF + S+ G + S
Sbjct: 167 -----------------------------FSETKIHNLLGHEGSIFYVNLSNNGRYVASC 197
Query: 275 SDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCL--TDSFIITAGEDCTC 330
SDDRS R+W++ E G SV + H AR+W+ DS +I+ EDCTC
Sbjct: 198 SDDRSIRLWDL------------ETGKQLSVGWSHTARIWNLMFFDNDSKLISVSEDCTC 245
Query: 331 RVWG--------SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
RVW ++ + + H+ + IW + VT+G D +K+
Sbjct: 246 RVWNIIESRENVAELSISNVYEVHLIKSIWGVDVKDDEMIAVTSGNDGRLKL 297
|
Involved in regulation of Ty1 transposition. Plays also a role in the regulation of the retromer complex and is required for the recycling from endosomes of plasma membrane proteins like CAN1 and MUP1. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9USZ0|WDR6_SCHPO Uncharacterized WD repeat-containing protein C1306.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1306.02 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 60/257 (23%)
Query: 130 RLSHWVFDVC-------FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
R+S W+F+ F V + N+ + S S W+++N+ + + LL+
Sbjct: 97 RISDWIFNAAELGEENKFCVVTSKNQVHLLSLSKGS---WEVTNT-----ISCEKTPLLF 148
Query: 183 --SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
++++ G+ + IAS + + +I VWK ++ N+P C +
Sbjct: 149 CATVQISGNEI---YIASASAFQQIYVWKFNY-------NNPPS-----------CVSID 187
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
LVGHEG+ F +++SS G L SVS+DR+ R+W + + S + G
Sbjct: 188 TY---------LVGHEGACFDLKFSSDGRYLCSVSEDRTLRLWSIES-----SPFLIATG 233
Query: 301 SSVLYGHNARVWDCC-LTDSFIITAGEDCTCRVWGSDGKQLK---MIKEHIGRGIWRCLY 356
+GH+ARVW C L + I T ED T R+W + K L H G+ IW +
Sbjct: 234 ----FGHSARVWRCVFLPNKEIATVSEDLTLRLWTWNDKTLTNTYTYTGHRGKHIWSLVV 289
Query: 357 DSLSSLLVTAGFDSAIK 373
S + ++ T G D +++
Sbjct: 290 SSANPIIYTGGNDGSVR 306
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tup11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 104/261 (39%), Gaps = 50/261 (19%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH--SPER 178
N++LV +L S VC +K N + LA GC + + V+D+ + +H SP+
Sbjct: 303 NINLVHTLEHPSV----VCCVKFSNNGKYLATGC-NQAANVFDVQTGKKLFTLHEESPDP 357
Query: 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238
++ + + + +GT +I +W + + V
Sbjct: 358 SRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKV----------------------- 394
Query: 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298
+ GHE I+ +++S G +VS S DR+AR+W+V IE
Sbjct: 395 ----------RYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIEN 444
Query: 299 VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358
+++ N D FI D RVW G ++ ++ H ++ +
Sbjct: 445 GVTAIAISPN---------DQFIAVGSLDQIIRVWSVSGTLVERLEGH-KESVYSIAFSP 494
Query: 359 LSSLLVTAGFDSAIKVHQFQA 379
SS+L++ D IKV + QA
Sbjct: 495 DSSILLSGSLDKTIKVWELQA 515
|
Transcriptional repressor. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q3Y8L7|WDR69_CHLRE Outer row dynein assembly protein 16 OS=Chlamydomonas reinhardtii GN=ODA16 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304
T V LVGHEG I ++ ++ G++L++ S D++ R+W D D+ E + VL
Sbjct: 336 TGVCQHTLVGHEGEISKVAFNPQGTRLITASSDKTCRLW--------DCDTGECL--QVL 385
Query: 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVW 333
GH ++ C FIIT +D TCR+W
Sbjct: 386 EGHTDEIFSCAFNYEGDFIITGSKDNTCRIW 416
|
Functions as a cargo-specific adapter between intraflagellar transport (IFT) particles and outer row dynein. Required for efficient dynein-mediated transport into the flagellar compartment. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|Q6CG48|LIS1_YARLI Nuclear distribution protein PAC1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 32/209 (15%)
Query: 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208
+LA C D +IR+WD I + + R +L + + A R S
Sbjct: 130 TLASACEDGNIRIWDYELGEIETTIKAHTRGVL-DVDFSQPDTGASRDKSHDKP------ 182
Query: 209 KVDWEHVAP--LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266
+ D H P LL S SSD ++ D Q+ N+ L GH+ +I +++++
Sbjct: 183 RADVSHAQPRALLVS--------CSSDL-TIRIWDPQNEYANVKTLTGHDHTISAVKFTA 233
Query: 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC-CLTDSFIITAG 325
G+ ++S S D++ R+W V++ Y ++GH V C L + FI +AG
Sbjct: 234 SGNHVISASRDKTVRVWSVQSGY----------CVRTVHGHTDWVKSCAALNEEFIFSAG 283
Query: 326 EDCTCRV---WGSDGKQLKMIKEHIGRGI 351
D RV DGK + EH+ G+
Sbjct: 284 IDHVTRVSEFVSGDGKMTLLGHEHVIEGV 312
|
Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | ||||||
| 359479974 | 1404 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.754 | 0.617 | 0.0 | |
| 297744046 | 1324 | unnamed protein product [Vitis vinifera] | 0.954 | 0.784 | 0.612 | 0.0 | |
| 224064722 | 1455 | predicted protein [Populus trichocarpa] | 0.974 | 0.728 | 0.611 | 0.0 | |
| 255548301 | 1385 | nucleotide binding protein, putative [Ri | 0.973 | 0.764 | 0.632 | 0.0 | |
| 356571019 | 1377 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.755 | 0.587 | 0.0 | |
| 297809977 | 1307 | transducin family protein [Arabidopsis l | 0.922 | 0.768 | 0.555 | 0.0 | |
| 449461733 | 1371 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.754 | 0.559 | 0.0 | |
| 449511518 | 1079 | PREDICTED: WD repeat-containing protein | 0.951 | 0.959 | 0.557 | 0.0 | |
| 22328224 | 1308 | transducin/WD40 domain-containing protei | 0.920 | 0.766 | 0.552 | 0.0 | |
| 4558555 | 1216 | hypothetical protein [Arabidopsis thalia | 0.837 | 0.749 | 0.519 | 0.0 |
| >gi|359479974|ref|XP_002273071.2| PREDICTED: uncharacterized protein LOC100257191 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1362 bits (3524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/1082 (61%), Positives = 825/1082 (76%), Gaps = 23/1082 (2%)
Query: 7 SEWRLDVGQYLGEISALCFVHLPS--HLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH 64
SEWRL G YLGEISALC +H P H SSLP+LLAG+GSQVLLYDLE+ ++R F V
Sbjct: 5 SEWRLHGGHYLGEISALCLIHAPPLPHFSSLPYLLAGTGSQVLLYDLESVKILRSFHVLE 64
Query: 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124
GIR+HGI+C ++C EGSV ++ ++A+FGE+RVKLF L E+ P SQ +P+ C+ L+L
Sbjct: 65 GIRVHGIACRLVDCKEGSV---LSVKIAVFGERRVKLFNLRIEMVPESQDEPQVCLELTL 121
Query: 125 VQSLPRLSHWVFDVCFLK--VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
+ SLP+ SHWV DVCF K + + L +GCSDNS+ +WD+ SS ILEV +PERCLLY
Sbjct: 122 LHSLPKFSHWVLDVCFFKEDIATSSHCLVVGCSDNSVHLWDMLTSSSILEVRNPERCLLY 181
Query: 183 SMKLWGDNLEALRIASGTIYNE-IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241
SM+LWGD L+ L +ASGTIYNE IIVWK ++ P L S +H + SSS F
Sbjct: 182 SMRLWGDELQNLLVASGTIYNEVIIVWKAVPQNCTPSLGSSVKDHINSSSSFCNGFNHYS 241
Query: 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE--YWKDSDSIEEV 299
QQ+ A+N+ RL GHEGSIFR+ WSS GSKLVSVSDDRSARIW + AE +S I +
Sbjct: 242 QQYQALNICRLAGHEGSIFRLAWSSNGSKLVSVSDDRSARIWPIHAEREVSDNSGEIVDT 301
Query: 300 GSS--VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357
GS+ VL+GHNAR+WDCC+ DS I+TAGEDCTCRVWG+DG QLKMIKEHIGRG+WRCLYD
Sbjct: 302 GSAGPVLFGHNARIWDCCILDSLIVTAGEDCTCRVWGTDGNQLKMIKEHIGRGVWRCLYD 361
Query: 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESH-PEAKEFNGRTEIFSIKIPNFSEQIRLTD 416
SLLVTAGFDSAIKVHQ QA LP + + E KE RTEIF++ IPN SE L D
Sbjct: 362 PKFSLLVTAGFDSAIKVHQLQASLPKAPQEQVAEVKELIDRTEIFTVCIPNSSEHTGLMD 421
Query: 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS-N 475
SKSEYVR L T E++LY++TN GYLYH KL D V W ++++VSE +PI+CMDLLS N
Sbjct: 422 SKSEYVRSLRFTCENSLYVSTNRGYLYHAKLFDTGDVKWTELIRVSEEVPIVCMDLLSRN 481
Query: 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535
PK G++DW+A+GDGKGNMT+ +V D+ P++ T+TWSAGIERQLLGT+WCKSLG+
Sbjct: 482 GPKLSSGVEDWIAVGDGKGNMTVTGIVSDLCPPKVGLTYTWSAGIERQLLGTFWCKSLGY 541
Query: 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVL 595
R+IFTADP+G+LKLW+LC+P S S+ +NNV L+AEF S F RIMCLDAS E+EVL
Sbjct: 542 RYIFTADPRGKLKLWRLCNPSQSASQNSAISNNVSLIAEFISSFNIRIMCLDASSEEEVL 601
Query: 596 FCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655
CGDLRGNL+L+PLLR +L S V+++PL YFKGAHGIS+VS +S+A SNQ EI
Sbjct: 602 ICGDLRGNLILYPLLRSILVGSSFGSEVKITPLTYFKGAHGISSVSGISIAGFVSNQIEI 661
Query: 656 RSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSID-LASCNYAAGFAST 714
+STGGDGCICYLEY +DR++L+FIGMK+VKELSL+QSVS+ +S+D L S YA GFAST
Sbjct: 662 QSTGGDGCICYLEYRRDRQNLQFIGMKRVKELSLVQSVSSGADSVDDLTSSKYAIGFAST 721
Query: 715 DFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERK 774
DFIIWNLITE KVVQ+PCGGWRRPHSY+LGDVPE++NCFAYVKDE+I+IHR WI ERK
Sbjct: 722 DFIIWNLITETKVVQVPCGGWRRPHSYYLGDVPEMRNCFAYVKDEIIYIHRFWIPESERK 781
Query: 775 MFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGF 834
+FP+NLH+QFHGRE+H+LCFVS + QVG N K ++SSWIATGCEDGTVRLTRYSPG
Sbjct: 782 IFPQNLHIQFHGREMHSLCFVSRDSQVGLNGKHDLSSRSSWIATGCEDGTVRLTRYSPGV 841
Query: 835 ENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISV 894
ENW SS+LLGEHVGGSAVRSIC VS+I+ I A N+ RQ+ + +ENPFLLISV
Sbjct: 842 ENWFSSQLLGEHVGGSAVRSICPVSKIHTIPADATNMPNGTQRQHATWDGRENPFLLISV 901
Query: 895 GAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSS 954
GAKRV+TSW+LR ID E + + ++ G S+SFQWLSTDMPTK S
Sbjct: 902 GAKRVITSWVLRTSTIDNKGEASDDGVQDKTGKGFP-------SMSFQWLSTDMPTKYSG 954
Query: 955 THGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFL 1014
K +D++ + I + +S+N +A++ S+ E +E + + +GD YE+DWRYLAVTAFL
Sbjct: 955 IRKKTEDLENIVGI-KKASSVNIDAESRSLFPERKEMQLRTCIGDMYENDWRYLAVTAFL 1013
Query: 1015 VKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLP 1074
VK P SR+TVCF+VV CSDATL+LRALILP RLWF+VA+LVP SSPVLALQH I+P+ P
Sbjct: 1014 VKDPVSRITVCFIVVGCSDATLSLRALILPSRLWFDVALLVPQSSPVLALQHAIIPLFQP 1073
Query: 1075 SK 1076
S+
Sbjct: 1074 SE 1075
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744046|emb|CBI37016.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1348 bits (3490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/1081 (61%), Positives = 817/1081 (75%), Gaps = 42/1081 (3%)
Query: 7 SEWRLDVGQYLGEISALCFVHLPS--HLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH 64
SEWRL G YLGEISALC +H P H SSLP+LLAG+GSQVLLYDLE+ ++R F V
Sbjct: 5 SEWRLHGGHYLGEISALCLIHAPPLPHFSSLPYLLAGTGSQVLLYDLESVKILRSFHVLE 64
Query: 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124
GIR+HGI+C ++C EGSV ++ ++A+FGE+RVKLF L E+ P SQ +P+ C+ L+L
Sbjct: 65 GIRVHGIACRLVDCKEGSV---LSVKIAVFGERRVKLFNLRIEMVPESQDEPQVCLELTL 121
Query: 125 VQSLPRLSHWVFDVCFLK--VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
+ SLP+ SHWV DVCF K + + L +GCSDNS+ +WD+ SS ILEV +PERCLLY
Sbjct: 122 LHSLPKFSHWVLDVCFFKEDIATSSHCLVVGCSDNSVHLWDMLTSSSILEVRNPERCLLY 181
Query: 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242
SM+LWGD L+ L +ASGTIYNEIIVWK ++ P L S
Sbjct: 182 SMRLWGDELQNLLVASGTIYNEIIVWKAVPQNCTPSLGS--------------------S 221
Query: 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE--YWKDSDSIEEVG 300
Q+ A+N+ RL GHEGSIFR+ WSS GSKLVSVSDDRSARIW + AE +S I + G
Sbjct: 222 QYQALNICRLAGHEGSIFRLAWSSNGSKLVSVSDDRSARIWPIHAEREVSDNSGEIVDTG 281
Query: 301 SS--VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358
S+ VL+GHNAR+WDCC+ DS I+TAGEDCTCRVWG+DG QLKMIKEHIGRG+WRCLYD
Sbjct: 282 SAGPVLFGHNARIWDCCILDSLIVTAGEDCTCRVWGTDGNQLKMIKEHIGRGVWRCLYDP 341
Query: 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESH-PEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417
SLLVTAGFDSAIKVHQ QA LP + + E KE RTEIF++ IPN SE L DS
Sbjct: 342 KFSLLVTAGFDSAIKVHQLQASLPKAPQEQVAEVKELIDRTEIFTVCIPNSSEHTGLMDS 401
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS-NE 476
KSEYVR L T E++LY++TN GYLYH KL D V W ++++VSE +PI+CMDLLS N
Sbjct: 402 KSEYVRSLRFTCENSLYVSTNRGYLYHAKLFDTGDVKWTELIRVSEEVPIVCMDLLSRNG 461
Query: 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536
PK G++DW+A+GDGKGNMT+ +V D+ P++ T+TWSAGIERQLLGT+WCKSLG+R
Sbjct: 462 PKLSSGVEDWIAVGDGKGNMTVTGIVSDLCPPKVGLTYTWSAGIERQLLGTFWCKSLGYR 521
Query: 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596
+IFTADP+G+LKLW+LC+P S S+ +NNV L+AEF S F RIMCLDAS E+EVL
Sbjct: 522 YIFTADPRGKLKLWRLCNPSQSASQNSAISNNVSLIAEFISSFNIRIMCLDASSEEEVLI 581
Query: 597 CGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656
CGDLRGNL+L+PLLR +L S V+++PL YFKGAHGIS+VS +S+A SNQ EI+
Sbjct: 582 CGDLRGNLILYPLLRSILVGSSFGSEVKITPLTYFKGAHGISSVSGISIAGFVSNQIEIQ 641
Query: 657 STGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSID-LASCNYAAGFASTD 715
STGGDGCICYLEY +DR++L+FIGMK+VKELSL+QSVS+ +S+D L S YA GFASTD
Sbjct: 642 STGGDGCICYLEYRRDRQNLQFIGMKRVKELSLVQSVSSGADSVDDLTSSKYAIGFASTD 701
Query: 716 FIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKM 775
FIIWNLITE KVVQ+PCGGWRRPHSY+LGDVPE++NCFAYVKDE+I+IHR WI ERK+
Sbjct: 702 FIIWNLITETKVVQVPCGGWRRPHSYYLGDVPEMRNCFAYVKDEIIYIHRFWIPESERKI 761
Query: 776 FPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFE 835
FP+NLH+QFHGRE+H+LCFVS + QVG N K ++SSWIATGCEDGTVRLTRYSPG E
Sbjct: 762 FPQNLHIQFHGREMHSLCFVSRDSQVGLNGKHDLSSRSSWIATGCEDGTVRLTRYSPGVE 821
Query: 836 NWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVG 895
NW SS+LLGEHVGGSAVRSIC VS+I+ I A N+ RQ+ + +ENPFLLISVG
Sbjct: 822 NWFSSQLLGEHVGGSAVRSICPVSKIHTIPADATNMPNGTQRQHATWDGRENPFLLISVG 881
Query: 896 AKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSST 955
AKRV+TSW+LR ID E + + ++ G S+SFQWLSTDMPTK S
Sbjct: 882 AKRVITSWVLRTSTIDNKGEASDDGVQDKTGKGF-------PSMSFQWLSTDMPTKYSGI 934
Query: 956 HGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLV 1015
K +D++ + I + +S+N +A++ S+ E +E + + +GD YE+DWRYLAVTAFLV
Sbjct: 935 RKKTEDLENIVGI-KKASSVNIDAESRSLFPERKEMQLRTCIGDMYENDWRYLAVTAFLV 993
Query: 1016 KCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLPS 1075
K P SR+TVCF+VV CSDATL+LRALILP RLWF+VA+LVP SSPVLALQH I+P+ PS
Sbjct: 994 KDPVSRITVCFIVVGCSDATLSLRALILPSRLWFDVALLVPQSSPVLALQHAIIPLFQPS 1053
Query: 1076 K 1076
+
Sbjct: 1054 E 1054
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064722|ref|XP_002301542.1| predicted protein [Populus trichocarpa] gi|222843268|gb|EEE80815.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1342 bits (3474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/1140 (61%), Positives = 831/1140 (72%), Gaps = 80/1140 (7%)
Query: 3 KKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV 62
++ S W+L+ G YLGEISALCF+H PS+LSSLPFLLAG+GSQ+LLY+LE+G +I+ F+V
Sbjct: 5 QQKQSRWKLERGHYLGEISALCFLHPPSNLSSLPFLLAGTGSQLLLYNLESGKIIKSFEV 64
Query: 63 FHGIRLHGISCNFINCTEGSV-STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121
F GIR+HGI+C+ + S V+F++A+FGEKR+KLF L+ Q + +
Sbjct: 65 FDGIRVHGITCSSSEEESSNFPSLTVSFKIAVFGEKRLKLFNLHI------QTPSQVNAD 118
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRS------LAIGCSDNSIRVWDISNSSIILEVHS 175
L+L+ LP+ +HWV DV F K + S LAIGCSDNS+ +WD+S SS++L+V S
Sbjct: 119 LALIHCLPKFTHWVLDVSFFKNSAVSSSQEERQCLAIGCSDNSVHLWDMSVSSVVLQVQS 178
Query: 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235
PERCLLYSM+LWGD+LE LRIASGTI+NEIIVWKV V P L
Sbjct: 179 PERCLLYSMRLWGDSLETLRIASGTIFNEIIVWKV--VPVEPQLGGLPSTSLLEDDMYLS 236
Query: 236 CF-----KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290
C +L+ QQH + ++ RL+GHEGSIFRI WSS GSKLVSVSDDRSARIW VR E
Sbjct: 237 CSLPDSSQLRFQQHKSAHMCRLIGHEGSIFRIAWSSDGSKLVSVSDDRSARIWAVRDEL- 295
Query: 291 KDSDSIEE-VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGR 349
KDSD+ EE V VL+GHNARVWDCC+ DS I+TAGEDCTCRVW DGKQLKMIKEHIGR
Sbjct: 296 KDSDNREEEVAGPVLFGHNARVWDCCICDSVIVTAGEDCTCRVWRLDGKQLKMIKEHIGR 355
Query: 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409
GIWRCLYD SSLL+TAGFDS+IKVHQ A + SLE E+K F R EIF+ +IPN S
Sbjct: 356 GIWRCLYDPTSSLLITAGFDSSIKVHQVSASISQSLEGQIESKPFIDRMEIFTCRIPNSS 415
Query: 410 EQI------------------RLTDS---------------------------------- 417
E I L DS
Sbjct: 416 EYIGLMDRFSSRVERLGNGFYALVDSDGNAFISNVKPIKCWLTYFILLCAIDFIIVYTVY 475
Query: 418 -KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476
KSEYVRCLH T EDTLY+ATN+GYLYH +L V W K+ Q+SE +PI+CMDLLS +
Sbjct: 476 CKSEYVRCLHFTCEDTLYVATNNGYLYHARLHGTVDVKWTKLAQLSEEVPIVCMDLLSKK 535
Query: 477 -PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535
PK+ G+DDWVALGDGKGNMTIVR++GDV TP++ FT TWSAG ERQLLGTYWCK+LG
Sbjct: 536 LPKHSNGVDDWVALGDGKGNMTIVRIMGDVFTPEVGFTVTWSAGKERQLLGTYWCKALGC 595
Query: 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVL 595
RFIFTADP+G LKLW+L DP S +T + L+AEF+SCFG RIMCLDASFEDEVL
Sbjct: 596 RFIFTADPRGILKLWRLSDPLPSGSLTYGRTFDASLIAEFTSCFGIRIMCLDASFEDEVL 655
Query: 596 FCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655
CGDLRGNLVLFPL + LL DK +++SPL YFKG+HGISTVS +SVAKL S+ EI
Sbjct: 656 VCGDLRGNLVLFPLSKGLLLDKPTLPEIKISPLCYFKGSHGISTVSNISVAKL-SDTIEI 714
Query: 656 RSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSID-LASCNYAAGFAST 714
RSTGGDGCICYLEYD D+ LEFIGMKQVKELSL+QSVSA+NN +D LA+C YA GFAST
Sbjct: 715 RSTGGDGCICYLEYDPDQRGLEFIGMKQVKELSLVQSVSADNNCLDDLANCGYAIGFAST 774
Query: 715 DFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERK 774
DFIIWNLI+EAKVVQIPCGGWRRPHSY+LGDVPE +CFAYVKDE+I+IHR W+ E K
Sbjct: 775 DFIIWNLISEAKVVQIPCGGWRRPHSYYLGDVPEAMSCFAYVKDEIIYIHRKWVPEREWK 834
Query: 775 MFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGF 834
+FP+NLH QFHGRE+H+LCFVS+N V AN ++SSWIATGCEDGTVRLTRY PG
Sbjct: 835 IFPQNLHTQFHGREMHSLCFVSKNTLVEANGNDFQFDRSSWIATGCEDGTVRLTRYIPGV 894
Query: 835 ENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISV 894
E W +SKLLGEHVGGSAVRSIC VS+++ I++ + N+S+ RQN A D +NPFLLISV
Sbjct: 895 EGWLTSKLLGEHVGGSAVRSICSVSKMHIIASDLTNLSDWTKRQNTCAGDMDNPFLLISV 954
Query: 895 GAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSS 954
GAKRVLTSWLLR R +D+ E +E + N N + S SS +SF+WLSTDMP +NSS
Sbjct: 955 GAKRVLTSWLLRDRNLDK-ENVFIEQEKMENENGYKPSSEVSSLMSFKWLSTDMPPRNSS 1013
Query: 955 THGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFL 1014
+ GK K + + IT+ + ++N + +G + E E +K DKYEDDWRYLAVTAFL
Sbjct: 1014 SRGKTKVAENIQGITKEL-NVNIDVTSGPLLLEKGEGYSKISYDDKYEDDWRYLAVTAFL 1072
Query: 1015 VKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLP 1074
VKC GSRLTVCFVVVACSDATLALRAL+LP RLWF+VA+LVPLSSPVL LQHVI+P LP
Sbjct: 1073 VKCAGSRLTVCFVVVACSDATLALRALVLPHRLWFDVALLVPLSSPVLTLQHVIIPSCLP 1132
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548301|ref|XP_002515207.1| nucleotide binding protein, putative [Ricinus communis] gi|223545687|gb|EEF47191.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1331 bits (3444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/1080 (63%), Positives = 831/1080 (76%), Gaps = 21/1080 (1%)
Query: 3 KKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV 62
++ S+WRL GQYLGEISALCF+HLPSH SSLP+LLAG+GSQ+LLY+LE +I FQV
Sbjct: 5 EQQQSKWRLHSGQYLGEISALCFLHLPSHFSSLPYLLAGTGSQLLLYNLEEVNIIESFQV 64
Query: 63 FHGIRLHGISCNFINCTEGSVS-TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121
F GIR+HGI+C I+ ++GS S T + +VA+FGEKRVKLF L+ + + + V+
Sbjct: 65 FQGIRVHGITCESIDNSKGSSSSTLLASKVAIFGEKRVKLFNLHIARNASHMH-----VD 119
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL 181
L+LV SLP+ +HW+ DV F+K N L IGC DNS+ +WDIS+SSIIL+V SPE+CLL
Sbjct: 120 LALVHSLPKFNHWLLDVSFVK---ENDCLGIGCGDNSVCIWDISSSSIILQVQSPEKCLL 176
Query: 182 YSMKLWGDNLEALRIASGTIYNEII-VWKVDWEHVAPLLNSPEGNHA---HGSSSDFKCF 237
YSM+LWG NLE+LRIASGTI+NE+I +WKV + L S G+ + SS+ C
Sbjct: 177 YSMRLWGYNLESLRIASGTIFNEVISIWKVVPHEGSLTLRSALGDDKRLNNSSSTQLHC- 235
Query: 238 KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297
QQ+ AV++ RLVGHEGSIFR+ WSS GSKLVSVSDDRSARIW V AE + +
Sbjct: 236 ----QQYKAVHISRLVGHEGSIFRLAWSSDGSKLVSVSDDRSARIWAVEAEQNDPDNQVM 291
Query: 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357
E ++L+GH ARVWDCC+ DS I+TAGEDCTCRVWG DGKQ +MIKEHIGRG+WRCLYD
Sbjct: 292 ETAGTILFGHTARVWDCCIFDSLIVTAGEDCTCRVWGLDGKQHRMIKEHIGRGVWRCLYD 351
Query: 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417
SSLL+TAGFDSA+KVHQ A P SL+ E +EF R +IF+ +IPN E DS
Sbjct: 352 QNSSLLLTAGFDSAVKVHQLPASFPQSLDGRSEREEFIDRIQIFTSRIPNSYEPTGFMDS 411
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS-NE 476
KSEYVRCLH T +DTLYIATNHGYLYH KL V W K++QVSE +PI+CMDLLS N
Sbjct: 412 KSEYVRCLHFTCKDTLYIATNHGYLYHAKLFQTQEVKWTKLVQVSEKVPIVCMDLLSKNL 471
Query: 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536
P++ G+DDWVALGDGKGN+TIVRV G V T +FT TWSA ERQLLGTYWCK+LG+R
Sbjct: 472 PRHSYGVDDWVALGDGKGNLTIVRVAGVVCTLDNNFTITWSAEKERQLLGTYWCKALGNR 531
Query: 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596
FIFTADP+G LK+W+L DP V + S++ +V LVAEFSSCFG RIMCLDAS +EVL
Sbjct: 532 FIFTADPRGVLKIWKLPDPLLPVPHISARMFDVSLVAEFSSCFGNRIMCLDASSSNEVLV 591
Query: 597 CGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656
CGDLRGNLVL+PL + LL D ++SPL+YFKGAHGIS+VS++SV+ L S++TEI
Sbjct: 592 CGDLRGNLVLYPLTKGLLLDSPAGTVTKISPLSYFKGAHGISSVSSISVSTLSSSETEIC 651
Query: 657 STGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSI-DLASCNYAAGFASTD 715
STG DGCICY EYD+D++SLEFIGMKQVKELSLIQSVSA NNS+ D A+ YA GFASTD
Sbjct: 652 STGADGCICYFEYDQDQKSLEFIGMKQVKELSLIQSVSANNNSLYDSANSGYAIGFASTD 711
Query: 716 FIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKM 775
FIIWNL TEAKV+QIPCGGWRRPHSY+LGD+PE+ CFAYVKDE+I+IHR WI ERK+
Sbjct: 712 FIIWNLTTEAKVLQIPCGGWRRPHSYYLGDIPEMDTCFAYVKDEIIYIHRQWILESERKI 771
Query: 776 FPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFE 835
FP ++H+QFHGRE+HTLCF+S N N K S +KSSWIATGCEDGTVRLTRY+PG E
Sbjct: 772 FPHHMHVQFHGRELHTLCFISNNDANEENGKDSLFDKSSWIATGCEDGTVRLTRYNPGVE 831
Query: 836 NWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVG 895
+W++SKLLGEHVGGSAVRSICFVS+++ I + + N+S+ + N E+ NP LLISVG
Sbjct: 832 SWTTSKLLGEHVGGSAVRSICFVSKMHFIPSDMTNMSDWRYKLNAFEENCGNPLLLISVG 891
Query: 896 AKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSST 955
AKRVLTSWLLR + +D+ + V+ + ++NGN +G SSS+SF+WLSTDMP K SS
Sbjct: 892 AKRVLTSWLLRDKRLDKKGDPLVKQE-DKNGNGYMPCMGISSSMSFKWLSTDMPAKISSA 950
Query: 956 HGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLV 1015
H K K+ +K+ T+N+ASM + K S+ E E E+K L D EDDWRYLAVTAF V
Sbjct: 951 HRKTKNRRKIGGNTKNVASMEPDTKFRSLIQEKGETESKGCLDDNDEDDWRYLAVTAFHV 1010
Query: 1016 KCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLPS 1075
KC GS+LTVCF+VVACSDATLALRAL+LP RLWF+VA+LVPLSSPVLALQHVI+P HL S
Sbjct: 1011 KCTGSKLTVCFIVVACSDATLALRALVLPHRLWFDVALLVPLSSPVLALQHVIIPAHLLS 1070
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571019|ref|XP_003553679.1| PREDICTED: uncharacterized protein LOC100780968 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1234 bits (3194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/1076 (58%), Positives = 798/1076 (74%), Gaps = 35/1076 (3%)
Query: 3 KKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV 62
++ L+E + G YLG+ISALCF+ +P+ SLPFLLAG GS++ LYDLE +R F V
Sbjct: 12 EQRLTERSMHRGPYLGDISALCFLRIPN--LSLPFLLAGLGSEITLYDLELSKRVRSFSV 69
Query: 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL 122
F G+R+HGI+ +F + +V +A+FGE RVKLF F+ + S PE L
Sbjct: 70 FEGVRVHGIASSF---PQENV-------IAVFGETRVKLFSFAFDSASRS---PE----L 112
Query: 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
+ V LP+ HWV DV FLK + LA+GCSDNS+ VWDISNS ++L+V SP RCLLY
Sbjct: 113 TFVHLLPKFGHWVLDVSFLK----SEFLAVGCSDNSVHVWDISNSKMVLKVQSPVRCLLY 168
Query: 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242
SM+LWG NLE RIASGTI+NEIIVWKV +H +S + NH H S S C +++DQ
Sbjct: 169 SMRLWGHNLEVFRIASGTIFNEIIVWKVAPQHNKS--SSHQENHYHQSISSSNCCQIKDQ 226
Query: 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302
+ A+++ +L+GHEGSIFRI WSSCGSKL+SVSDDRSAR+W V E ++ + +
Sbjct: 227 LYEAIHVCKLIGHEGSIFRIAWSSCGSKLISVSDDRSARVWAVATE--REHSLCHDPVAL 284
Query: 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSL 362
VL+GH ARVWDCC+ D+ I+T EDCTCR+WG DGKQL++IKEHIGRGIWRCLYD SSL
Sbjct: 285 VLFGHYARVWDCCMYDNLIVTVSEDCTCRIWGVDGKQLQVIKEHIGRGIWRCLYDPNSSL 344
Query: 363 LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422
L+TAGFDSAIKVHQ +A LP LE+ A+ GRTE+FSI IPN DSKSEYV
Sbjct: 345 LITAGFDSAIKVHQPRASLPRGLEA---AQGSPGRTEMFSICIPNVLNHSGFMDSKSEYV 401
Query: 423 RCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP-KYPC 481
RCL + +D+LY+ATNHGYLY KLCD WN+++QVS G PIICMDLLS + + C
Sbjct: 402 RCLRFSCQDSLYVATNHGYLYLAKLCDTGGAQWNQLVQVSNGAPIICMDLLSKDSFELDC 461
Query: 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541
G +DW+A+GDGKGNMT++ V D TP + FTW A +ERQLLGTYWCKSLG R++FTA
Sbjct: 462 GAEDWIAIGDGKGNMTVIGVSNDDCTPTVRLCFTWPAEMERQLLGTYWCKSLGCRYVFTA 521
Query: 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601
DP+G LKLW+L DP S S ++NNV +AEF+S +G RIMCLDA E+EVL CGD+R
Sbjct: 522 DPRGTLKLWRLPDPSQSDLPSSMRSNNVSCIAEFTSNYGMRIMCLDACMEEEVLACGDVR 581
Query: 602 GNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD 661
GN+VLFPLL++L+ S A +++ P+N+FKG HGIS+VS++SV KL NQ EI STG D
Sbjct: 582 GNMVLFPLLKNLVLGISAAQEMKIPPVNHFKGVHGISSVSSVSVTKLGYNQIEICSTGAD 641
Query: 662 GCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721
GCICYLE+DK+ ++L+F GMKQVK LSLI+ VS +NNS D S +YAAGFAS DFI+WNL
Sbjct: 642 GCICYLEFDKEMQNLQFTGMKQVKGLSLIEYVSVDNNSGDKLSSSYAAGFASVDFIVWNL 701
Query: 722 ITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLH 781
E KVV IPCGGWRRPHSY+LGD+PE+KNCFA++KDE+I+IHRHWI N + K++P++LH
Sbjct: 702 ANENKVVNIPCGGWRRPHSYYLGDIPEMKNCFAFIKDEMINIHRHWIHNRDGKVYPQSLH 761
Query: 782 MQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSK 841
MQFHGREIH+LCF+S++ VG N K + +KSSWIATGCEDGTVRLT YSPG ENWS+SK
Sbjct: 762 MQFHGREIHSLCFISDDVLVGDNYKCALFSKSSWIATGCEDGTVRLTWYSPGIENWSTSK 821
Query: 842 LLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLT 901
LLGEHVGGSAVRSIC VS++ IS+ NV + N E+ +NP LLISVGAKRVLT
Sbjct: 822 LLGEHVGGSAVRSICCVSKVYTISSDTGNVPDGRIELNAAVENNDNPTLLISVGAKRVLT 881
Query: 902 SWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSSTHGK-KK 960
SW+L++R +D + + + N G D + SSS++FQWLSTDMP K S TH +
Sbjct: 882 SWILKNRRLDNKNDFVTDHQCNSEGVDDQFLSNFSSSMTFQWLSTDMPAKYSITHNTPEN 941
Query: 961 DMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLVKCPGS 1020
+++K+ I N+++ N++A+ GS+ SESR + DK+EDDWRYLAVTAFLVKC GS
Sbjct: 942 NVEKIVGIAENVSNTNSDARMGSLVSESR---TANLIRDKHEDDWRYLAVTAFLVKCSGS 998
Query: 1021 RLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLPSK 1076
R++VCFVVVACSDATL LRAL+LP RLWF VA+LVPL +PVL+LQH+I P+ P K
Sbjct: 999 RISVCFVVVACSDATLVLRALVLPFRLWFGVALLVPLLAPVLSLQHIIFPMCRPHK 1054
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809977|ref|XP_002872872.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318709|gb|EFH49131.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1186 bits (3069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/1081 (55%), Positives = 775/1081 (71%), Gaps = 77/1081 (7%)
Query: 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR 67
+W G YLGE+S+L F++LP H+SS+P+LLAGSGS++LLYDL +G LIR FQVF G+R
Sbjct: 9 KWNPHAGPYLGEVSSLAFLNLPQHVSSIPYLLAGSGSEILLYDLSSGELIRSFQVFEGVR 68
Query: 68 LHGISCN--FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV 125
+HG C+ FI T+ R T+++ +FGEK+VK+F L EL+ S E VNL +
Sbjct: 69 VHGTVCSSSFIRSTD-----RYTYKLVIFGEKKVKIFSLIVELASGSG---EISVNLEIF 120
Query: 126 QSLPRLSHWVFDVCFLKVCNG-----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
SLPRLS+WVFDVCFL+ G ++ LAIGCSDNS+ +WD+ S + E+ SPERCL
Sbjct: 121 DSLPRLSNWVFDVCFLQDSTGSLGDEDKLLAIGCSDNSLSIWDVKESRMAFEIQSPERCL 180
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
LY+M+LWGD++ LRIASGTI+NEIIVW+ + +H H
Sbjct: 181 LYTMRLWGDSISTLRIASGTIFNEIIVWRT------VGFDGDNADHGH------------ 222
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
++A + RL GHEGSIFRI WS GSKLVSVSDDRSARIWE+ DS E VG
Sbjct: 223 ---YSASPMLRLTGHEGSIFRIVWSLDGSKLVSVSDDRSARIWEI--------DSQEVVG 271
Query: 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS 360
VL+GH+ RVWDCC++DSFI+TAGEDCTCRVWG DG QL++IKEHIGRGIWRCLYD S
Sbjct: 272 P-VLFGHSVRVWDCCISDSFIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYDPNS 330
Query: 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420
SLLVTAGFDSAIKVHQ +L + E FS +PN +E LTDSKSE
Sbjct: 331 SLLVTAGFDSAIKVHQLHNRGSETLLDAVGVLNSPDKVEYFSTCLPNLTEHTGLTDSKSE 390
Query: 421 YVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN-EPKY 479
YVRC+ LT EDT+Y+ATNHG LYH +L +V W +++++ E PII MD++S + +
Sbjct: 391 YVRCMQLTQEDTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGKVRE 450
Query: 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539
C +DDWVALGDGKGNMTIVRV+GD++ P +W A ERQLLG +WCKSLG+RF+F
Sbjct: 451 SCALDDWVALGDGKGNMTIVRVIGDIYNPHAGLNQSWKASPERQLLGAFWCKSLGYRFVF 510
Query: 540 TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599
+ +P+G LKLW+L P S +++T +V L+AEFSSCFG RIMC+DAS EDEV+ CGD
Sbjct: 511 SCNPRGLLKLWKLSGPSESAASSAAETYHVSLLAEFSSCFGKRIMCVDASVEDEVILCGD 570
Query: 600 LRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTG 659
LRGN+ LFPL +D+LN SV+ +++ L YFKGAHGIS+VS+LSVA+L SN+ EI STG
Sbjct: 571 LRGNITLFPLSKDMLNGVSVSSELKIPSLKYFKGAHGISSVSSLSVARLTSNKAEICSTG 630
Query: 660 GDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV-SAENNSIDLASCNYAAGFASTDFII 718
DGCICY EYD++R++LEF+G+KQ+KEL+L+QSV S D + +YAAGFASTDFI+
Sbjct: 631 ADGCICYFEYDRERQTLEFMGLKQLKELNLVQSVCQGVQFSKDHPNNDYAAGFASTDFIL 690
Query: 719 WNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPK 778
WNL EAKV QI CGGWRRPHS++LG++PE +NCFAY+KD+VIHIHRHW+ + K+FP
Sbjct: 691 WNLTAEAKVTQITCGGWRRPHSFYLGEIPEWQNCFAYLKDDVIHIHRHWVVGKKTKVFPL 750
Query: 779 NLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWS 838
NLH QFHGRE+H+LCF+S + + G + K + ++SSWIATGCEDG+VRLTRY F NWS
Sbjct: 751 NLHTQFHGRELHSLCFISADTKAGFDESKLS-DRSSWIATGCEDGSVRLTRYVSEFGNWS 809
Query: 839 SSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKR 898
+S+LLGEHVGGSAVRS+C VS ++ IS+ + NV ++ Q+ +D E+P LLISVGAKR
Sbjct: 810 TSELLGEHVGGSAVRSVCCVSNMHMISSDMPNV-PDVCEQDSAVDDSESPCLLISVGAKR 868
Query: 899 VLTSWLLRHRGIDEMEETTV-ESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSSTHG 957
V++SWLLR+ ++ E+ + ++ +NR +++ SS++FQWL+TDMPTK S G
Sbjct: 869 VVSSWLLRNGRQNKKGESCISDNGHNRASSEV-------SSVTFQWLATDMPTK-SRPCG 920
Query: 958 KKKDMKKVDHI----TRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAF 1013
K + K+D + T NI + +N ERE YEDDWRY+A TAF
Sbjct: 921 KTEKSPKLDGVDEDTTANITKLGSNTY--------HERE-------NYEDDWRYMAATAF 965
Query: 1014 LVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHL 1073
LVKC GSRLT+CF+ VACSDA+L LRAL+LP RLWF+VA LVPL SPVL+LQH ++ +H
Sbjct: 966 LVKCVGSRLTICFIAVACSDASLTLRALVLPHRLWFDVASLVPLKSPVLSLQHAVVHLHP 1025
Query: 1074 P 1074
P
Sbjct: 1026 P 1026
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461733|ref|XP_004148596.1| PREDICTED: uncharacterized protein LOC101207681 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/1078 (55%), Positives = 776/1078 (71%), Gaps = 43/1078 (3%)
Query: 2 GKKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQ 61
GK++ S+W L GQYLGEISALCF+HLP +SS P LLAGSGS+V+ Y+LE+G ++ F+
Sbjct: 3 GKEEQSDWHLHSGQYLGEISALCFLHLPPQISSFPILLAGSGSEVMAYNLESGKMLESFR 62
Query: 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121
VF GIR+HGIS +N E S T++ F + +FGEKRVKL+ ++ E+ E CVN
Sbjct: 63 VFEGIRVHGISSISLNFNEASSFTKLDFILVVFGEKRVKLYRISVEVIA------EVCVN 116
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGCSDNSIRVWDISNSSIILEVHSPERC 179
+ L+ SLPR +HWV D CFLKV + +AIGC DNS+ VWD S +IL+V SPERC
Sbjct: 117 MVLLCSLPRFNHWVLDACFLKVPIHDNCGYIAIGCGDNSVHVWDTCESRMILKVESPERC 176
Query: 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239
LLYSM+LWGD+++ +R+ASGTI+NEIIVW+V P +GN + K +
Sbjct: 177 LLYSMRLWGDDIDTIRVASGTIFNEIIVWEV-----VP----SKGNKKNLDEKSHKTHDI 227
Query: 240 Q--DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297
Q Q+ AV+ RLV HEGSIFRI WSS G KLVSVSDDRSARIW + A+ D+D+
Sbjct: 228 QFHHMQYEAVHKSRLVAHEGSIFRIAWSSDGFKLVSVSDDRSARIWSLNAK-GSDADNPG 286
Query: 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357
EV VL+GHNARVWDCC+ DS IITA EDCTCR WG DG+QL+MIKEHIGRG+WRCLYD
Sbjct: 287 EV--IVLFGHNARVWDCCIYDSLIITASEDCTCRAWGIDGQQLEMIKEHIGRGVWRCLYD 344
Query: 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417
+S+LL+TAGFDS+IKVH+ L G+ E + + + E+F+ IP+ + R DS
Sbjct: 345 PISNLLITAGFDSSIKVHRLNTSLSGTSNEPAENADRSMKREVFTTCIPDSLDHNRHMDS 404
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP 477
KSEYVRCL +SE T+Y+ATNHGYLYH L D V W K++ V E + IICMDLL+ P
Sbjct: 405 KSEYVRCLRFSSERTIYVATNHGYLYHATLSDSMGVMWTKLIHVGEEVQIICMDLLACSP 464
Query: 478 -KYPCGIDDWVALGDGKGNMTIVRVVGD--VHTPQLSFTFTWSAGIERQLLGTYWCKSLG 534
+ G +DW+ALGD +G MT+++V+ D HTP +S FTWSA ERQLLGT+WCKSLG
Sbjct: 465 FEVSGGAEDWIALGDSQGRMTVLKVLHDSNAHTPDIS--FTWSAEKERQLLGTFWCKSLG 522
Query: 535 HRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEV 594
R+IFTADP+G LKLW+L D S+ ++ K N LVAE+ SCFG RIMCLD S E+E+
Sbjct: 523 FRYIFTADPRGALKLWRLADHVSA--SQNGKNYNPSLVAEYISCFGLRIMCLDVSCEEEI 580
Query: 595 LFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654
+ CGD+RGNL+LFPL +DLL + + V++ P YFKGAHGISTV+++ VA+L S QTE
Sbjct: 581 VVCGDVRGNLILFPLSKDLLLETPITTGVKIIPTCYFKGAHGISTVTSVVVARLESCQTE 640
Query: 655 IRSTGGDGCICYLEYDK--DRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFA 712
+ STG DGCIC++EY K DR+ LEFIGMKQVK L+ +QS+ + S+DL S YA GFA
Sbjct: 641 LHSTGADGCICHIEYVKVNDRKVLEFIGMKQVKALTSVQSLFYDQTSLDLTSNLYATGFA 700
Query: 713 STDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGE 772
S DFIIWNL TEAKV+QI CGGWRRP+S +LGD+PE+KNCFAYVKDE I+IHRHW+S E
Sbjct: 701 SADFIIWNLTTEAKVLQIQCGGWRRPYSNYLGDIPELKNCFAYVKDETIYIHRHWVSGSE 760
Query: 773 RKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSP 832
RK+FP+NLH+QFHGRE+H+LCFV E A+ K ++S WI TGCEDGTVR+TRY+
Sbjct: 761 RKVFPQNLHVQFHGRELHSLCFVPE-----ADNKLGISSRSCWIVTGCEDGTVRMTRYTR 815
Query: 833 GFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLI 892
G +W +S LLGEHVGGSAVRS+C++S ++ IS+ + + Q +D+E+P LLI
Sbjct: 816 GINSWPASNLLGEHVGGSAVRSLCYISNVHLISSNGTITPDAKDTQESDLDDREDPVLLI 875
Query: 893 SVGAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKN 952
S GAKRVLTSWL +HR ++++ + +N G+ E S G +S+SF+WLSTDMPTKN
Sbjct: 876 SAGAKRVLTSWLQKHRKLEKIANACLH--HNAKGS-CEPS-GFPTSISFKWLSTDMPTKN 931
Query: 953 SSTHGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTA 1012
S++ ++ + +S+N +A++ S+ E E K+ +KYEDDWRY+AVT
Sbjct: 932 STS--RRNSFNTMQDEATTGSSINPDAESKSL-QEKEELSLKSCSVEKYEDDWRYMAVTG 988
Query: 1013 FLVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMP 1070
FLVK SR TVCF+VVACSDATL+LRALILP RLWF+VA LVP+ SPVL LQH++ P
Sbjct: 989 FLVKHFNSRFTVCFIVVACSDATLSLRALILPHRLWFDVASLVPVGSPVLTLQHIVFP 1046
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511518|ref|XP_004163977.1| PREDICTED: WD repeat-containing protein 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/1078 (55%), Positives = 776/1078 (71%), Gaps = 43/1078 (3%)
Query: 2 GKKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQ 61
GK++ S+W L GQYLGEISALCF+HLP +SS P LLAGSGS+V++Y+LE+G ++ F+
Sbjct: 3 GKEEQSDWHLHSGQYLGEISALCFLHLPPQISSFPILLAGSGSEVMVYNLESGKMLESFR 62
Query: 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121
VF GIR+HGIS +N E S T++ F + +FGEKRVKL+ ++ E+ E CVN
Sbjct: 63 VFEGIRVHGISSISLNFNEASSFTKLDFILVVFGEKRVKLYRISVEVIA------EVCVN 116
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGCSDNSIRVWDISNSSIILEVHSPERC 179
+ L+ SLPR +HWV D CFLKV + +AIGC DNS+ VWD S +IL+V SPERC
Sbjct: 117 MVLLCSLPRFNHWVLDACFLKVPIHDNCGYIAIGCGDNSVHVWDTCESRMILKVESPERC 176
Query: 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239
LLYSM+LWGD+++ +R+ASGTI+NEIIVW+V P +GN + K +
Sbjct: 177 LLYSMRLWGDDIDTIRVASGTIFNEIIVWEV-----VP----SKGNKKNLDEKSHKTHDI 227
Query: 240 Q--DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297
Q Q+ AV+ RL+ HEGSIFRI WSS G KLVSVSDDRSARIW + A+ D+D+
Sbjct: 228 QFHHMQYEAVHKSRLIAHEGSIFRIAWSSDGFKLVSVSDDRSARIWSLNAK-GSDADNPG 286
Query: 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357
EV VL+GHNARVWDCC+ DS IITA EDCTCR WG DG+QL+MIKEHIGRG+WRCLYD
Sbjct: 287 EV--IVLFGHNARVWDCCIYDSLIITASEDCTCRAWGIDGQQLEMIKEHIGRGVWRCLYD 344
Query: 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417
+S+LL+TAGFDS+IKVH+ L G+ E + + + E+F+ IP+ + R DS
Sbjct: 345 PISNLLITAGFDSSIKVHRLNTSLSGTSNEPAENADRSMKREVFTTCIPDSLDHNRHMDS 404
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP 477
KSEYVRCL +SE T+Y+ATNHGYLYH L D V W K++ V E + IICMDLL+ P
Sbjct: 405 KSEYVRCLRFSSERTIYVATNHGYLYHATLSDSMGVMWTKLIHVGEEVQIICMDLLACSP 464
Query: 478 -KYPCGIDDWVALGDGKGNMTIVRVVGD--VHTPQLSFTFTWSAGIERQLLGTYWCKSLG 534
+ G +DW+ALGD +G MT+++V+ D HTP +S FTWSA ERQLLGT+WCKSLG
Sbjct: 465 FEVSGGAEDWIALGDSQGRMTVLKVLHDSNAHTPDIS--FTWSAEKERQLLGTFWCKSLG 522
Query: 535 HRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEV 594
R+IFTADP+G LKLW+L D S+ ++ K N LVAE+ SCFG RIMCLD S E+E+
Sbjct: 523 FRYIFTADPRGALKLWRLADHVSA--SQNGKNYNPSLVAEYISCFGLRIMCLDVSCEEEI 580
Query: 595 LFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654
+ CGD+RGNL+LFPL +DLL + + V++ P YFKGAHGISTV+++ VA+L S QTE
Sbjct: 581 VVCGDVRGNLILFPLSKDLLLETPITTGVKIIPTCYFKGAHGISTVTSVVVARLESCQTE 640
Query: 655 IRSTGGDGCICYLEYDK--DRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFA 712
+ STG DGCIC++EY K DR+ LEFIGMKQVK L+ +QS+ + S+DL S YA GFA
Sbjct: 641 LHSTGADGCICHIEYVKVNDRKVLEFIGMKQVKALTSVQSLFYDQTSLDLTSNLYATGFA 700
Query: 713 STDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGE 772
S DFIIWNL TEAKV+QI CGGWRRP+S +LGD+PE+KNCFAYVKDE I+IHRHW+S E
Sbjct: 701 SADFIIWNLTTEAKVLQIQCGGWRRPYSNYLGDIPELKNCFAYVKDETIYIHRHWVSGSE 760
Query: 773 RKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSP 832
RK+FP+NLH+QFHGRE+H+LCFV E A+ K ++S WI TGCEDGTVR+TRY+
Sbjct: 761 RKVFPQNLHVQFHGRELHSLCFVPE-----ADNKLGISSRSCWIVTGCEDGTVRMTRYTR 815
Query: 833 GFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLI 892
G +W +S LLGEHVGGSAVRS+C++S ++ IS+ + + Q +D+E+P LLI
Sbjct: 816 GINSWPASNLLGEHVGGSAVRSLCYISNVHLISSNGTITPDAKDTQESDLDDREDPVLLI 875
Query: 893 SVGAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKN 952
S GAKRVLTSWL +HR ++++ + +N G+ E S G +S+SF+WLSTDMPTKN
Sbjct: 876 SAGAKRVLTSWLQKHRKLEKIANACLH--HNAKGS-CEPS-GFPTSISFKWLSTDMPTKN 931
Query: 953 SSTHGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTA 1012
S++ ++ + +S+N +A++ S+ E E + +KYEDDWRY+AVT
Sbjct: 932 STS--RRNSFNTMQDEATTGSSINPDAESKSL-QEKEELSLTSCSVEKYEDDWRYMAVTG 988
Query: 1013 FLVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMP 1070
FLVK SR TVCF+VVACSDATL+LRALILP RLWF+VA LVP+ SPVL LQH++ P
Sbjct: 989 FLVKHFNSRFTVCFIVVACSDATLSLRALILPHRLWFDVASLVPVGSPVLTLQHIVFP 1046
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328224|ref|NP_192095.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|30678983|ref|NP_849536.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|19699003|gb|AAL91237.1| unknown protein [Arabidopsis thaliana] gi|32306503|gb|AAP78935.1| At4g01860 [Arabidopsis thaliana] gi|332656686|gb|AEE82086.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332656687|gb|AEE82087.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1166 bits (3016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/1081 (55%), Positives = 775/1081 (71%), Gaps = 79/1081 (7%)
Query: 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR 67
+W G YLGE+S+L F++LP H+SS+P+LLAGSGS++LLYDL +G LIR FQVF G+R
Sbjct: 9 KWNPHAGPYLGEVSSLAFLNLPQHVSSIPYLLAGSGSEILLYDLSSGELIRSFQVFEGVR 68
Query: 68 LHGISCN--FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV 125
+HG C+ F++ E R T+++ +FGEK+VK+F L EL+ +S E VNL
Sbjct: 69 VHGTVCSKSFVHSAE-----RYTYKLVIFGEKKVKIFSLIVELASSSG---EISVNLENF 120
Query: 126 QSLPRLSHWVFDVCFLKVCNG-----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
+SLPRLS+WVFDVCFL+ G ++ LAIGCSDNS+ +WD+ S + E+ SPERCL
Sbjct: 121 ESLPRLSNWVFDVCFLQDSTGSLEEEDKLLAIGCSDNSLSIWDVKESRMAFEIQSPERCL 180
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
LY+M+LWGD++ LRIASGTI+NEIIVW+ A L+ +H H
Sbjct: 181 LYTMRLWGDSISTLRIASGTIFNEIIVWR------AVGLDGDNVDHGH------------ 222
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
++A ++ RL GHEGSIFRI WS GSK+VSVSDDRSARIWE+ DS E VG
Sbjct: 223 ---YSASHMLRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI--------DSQEVVG 271
Query: 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS 360
VL+GH+ RVWDCC++DS I+TAGEDCTCRVWG DG QL++IKEHIGRGIWRCLYD S
Sbjct: 272 P-VLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYDPNS 330
Query: 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG--RTEIFSIKIPNFSEQIRLTDSK 418
SLLVTAGFDSAIKVHQ GS S N + E FS +PN ++ LTDSK
Sbjct: 331 SLLVTAGFDSAIKVHQLHN--RGSETSLDAVGVLNSPDKLEYFSTCLPNSTKHTGLTDSK 388
Query: 419 SEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN-EP 477
SEYVRCL T EDT+Y+ATNHG LYH +L +V W +++++ E PII MD++S +
Sbjct: 389 SEYVRCLQFTQEDTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGKV 448
Query: 478 KYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRF 537
+ C +DDWVALGDGKGNMTIVRV+GD++ P +W A ERQLLG +WCKSLG+RF
Sbjct: 449 RESCALDDWVALGDGKGNMTIVRVIGDMYNPHAGLNQSWKASPERQLLGAFWCKSLGYRF 508
Query: 538 IFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFC 597
+F+ +P+G LKLW+L S +++T +V L+AEFSS FG RIMC+DAS EDEV+ C
Sbjct: 509 VFSCNPRGLLKLWKLSGSLES----AAETYDVSLLAEFSSGFGKRIMCVDASVEDEVILC 564
Query: 598 GDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRS 657
GDLRGN+ LFPL +D+L+ SV+ +++ L YFKGAHGISTVS+LSVA+L SN+ EI S
Sbjct: 565 GDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGISTVSSLSVARLTSNKAEICS 624
Query: 658 TGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV-SAENNSIDLASCNYAAGFASTDF 716
TG DGCICY EYD++ ++LEF+G+KQ+KEL+L+QSV S D + +YAAGFASTDF
Sbjct: 625 TGADGCICYFEYDREMQTLEFMGLKQLKELNLVQSVCQGVQFSEDHPNNDYAAGFASTDF 684
Query: 717 IIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMF 776
I+WNL E KV QI CGGWRRPHS++LG++PE +NCFAYVKD+VIHIHRHW+ + K+F
Sbjct: 685 ILWNLTAETKVTQISCGGWRRPHSFYLGEIPEWQNCFAYVKDDVIHIHRHWVGGQKTKVF 744
Query: 777 PKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL-NKSSWIATGCEDGTVRLTRYSPGFE 835
P NLH QFHGRE+H+LCF+S + + G + ++S + ++SSWIATGCEDG+VRL+RY+ F
Sbjct: 745 PLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSRYASEFG 804
Query: 836 NWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVG 895
NWS+S+LLGEHVGGSAVRS+C VS ++ +S+ V N+ + + Q+ +D E+P LLISVG
Sbjct: 805 NWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCD-QDYAVDDCESPRLLISVG 863
Query: 896 AKRVLTSWLLRH-RGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSS 954
AKRV+TSWLLR+ R + E ++ +NR +++ S ++FQWL+TDMPTK
Sbjct: 864 AKRVVTSWLLRNGRHKKKGESCISDNGHNRASSEV-------SPVTFQWLATDMPTKYRP 916
Query: 955 THGKKKDMKKVDHITRNIASMNAN-AKTGSISSESREREAKAFLGDKYEDDWRYLAVTAF 1013
GK + K++ + + + AN K GS + RE YEDDWRY+A TAF
Sbjct: 917 C-GKIEKSPKLEGVEEDTS---ANVTKLGSNTYNERE---------NYEDDWRYMAATAF 963
Query: 1014 LVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHL 1073
LVKC GSRLT+CF+ VACSDATL LRAL+LP RLWF+VA LVPL SPVL+LQH ++P+
Sbjct: 964 LVKCVGSRLTICFIAVACSDATLTLRALVLPHRLWFDVASLVPLKSPVLSLQHAVVPLDP 1023
Query: 1074 P 1074
P
Sbjct: 1024 P 1024
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4558555|gb|AAD22648.1|AC007138_12 hypothetical protein [Arabidopsis thaliana] gi|7268570|emb|CAB80679.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/1029 (51%), Positives = 696/1029 (67%), Gaps = 118/1029 (11%)
Query: 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR 67
+W G YLGE+S+L F++LP H+SS+P+LLAGSGS++LLYDL +G LIR FQVF G+R
Sbjct: 9 KWNPHAGPYLGEVSSLAFLNLPQHVSSIPYLLAGSGSEILLYDLSSGELIRSFQVFEGVR 68
Query: 68 LHGISCN--FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV 125
+HG C+ F++ E R T+++ +FGEK+VK+F L EL+ +S E VNL
Sbjct: 69 VHGTVCSKSFVHSAE-----RYTYKLVIFGEKKVKIFSLIVELASSSG---EISVNLENF 120
Query: 126 QSLPRLSHWVFDVCFLKVCNG-----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
+SLPRLS+WVFDVCFL+ G ++ LAIGCSDNS+ +WD+ S + E+ SPERCL
Sbjct: 121 ESLPRLSNWVFDVCFLQDSTGSLEEEDKLLAIGCSDNSLSIWDVKESRMAFEIQSPERCL 180
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
LY+M+LWGD++ LRIASGTI+NEIIVW+ A L+ +H H
Sbjct: 181 LYTMRLWGDSISTLRIASGTIFNEIIVWR------AVGLDGDNVDHGH------------ 222
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
++A ++ RL GHEGSIFRI WS GSK+VSVSDDRSARIWE+ DS E VG
Sbjct: 223 ---YSASHMLRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI--------DSQEVVG 271
Query: 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS 360
VL+GH+ RVWDCC++DS I+TAGEDCTCRVWG DG QL++IKEHIGRGIWRCLYD S
Sbjct: 272 P-VLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYDPNS 330
Query: 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG--RTEIFSIKIPNFSEQIRLTDSK 418
SLLVTAGFDSAIKVHQ GS S N + E FS +PN ++ LTDSK
Sbjct: 331 SLLVTAGFDSAIKVHQLHN--RGSETSLDAVGVLNSPDKLEYFSTCLPNSTKHTGLTDSK 388
Query: 419 SEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN-EP 477
SEYVRCL T EDT+Y+ATNHG LYH +L +V W +++++ E PII MD++S +
Sbjct: 389 SEYVRCLQFTQEDTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGKV 448
Query: 478 KYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRF 537
+ C +DDWVALGDGKGNMTIVRV+GD++ P +W A ERQLLG +WCKSLG+R
Sbjct: 449 RESCALDDWVALGDGKGNMTIVRVIGDMYNPHAGLNQSWKASPERQLLGAFWCKSLGYR- 507
Query: 538 IFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFC 597
G LKLW+L S +++T +V L+AEFSS FG RIMC+DAS EDEV+ C
Sbjct: 508 -------GLLKLWKLSGSLES----AAETYDVSLLAEFSSGFGKRIMCVDASVEDEVILC 556
Query: 598 GDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRS 657
GDLRGN+ LFPL +D+L+ SV+ +++ L YFKGAHGISTVS+LSVA+L SN+ EI S
Sbjct: 557 GDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGISTVSSLSVARLTSNKAEICS 616
Query: 658 TGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV-SAENNSIDLASCNYAAGFASTDF 716
TG DGCICY EYD++ ++LEF+G+KQ+KEL+L+QSV S D + +YAAGFASTDF
Sbjct: 617 TGADGCICYFEYDREMQTLEFMGLKQLKELNLVQSVCQGVQFSEDHPNNDYAAGFASTDF 676
Query: 717 IIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMF 776
I+WNL E KD+VIHIHRHW+ + K+F
Sbjct: 677 ILWNLTAE-------------------------------TKDDVIHIHRHWVGGQKTKVF 705
Query: 777 PKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL-NKSSWIATGCEDGTVRLTRYSPGFE 835
P NLH QFHGRE+H+LCF+S + + G + ++S + ++SSWIATGCEDG+VRL+RY+ F
Sbjct: 706 PLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSRYASEFG 765
Query: 836 NWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVG 895
NWS+S+LLGEHVGGSAVRS+C VS ++ +S+ V N+ + + Q+ +D E+P LLISVG
Sbjct: 766 NWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCD-QDYAVDDCESPRLLISVG 824
Query: 896 AKRVLTSWLLRH-RGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSS 954
AKRV+TSWLLR+ R + E ++ +NR +++ S ++FQWL+TDMPTK
Sbjct: 825 AKRVVTSWLLRNGRHKKKGESCISDNGHNRASSEV-------SPVTFQWLATDMPTKYRP 877
Query: 955 THGKKKDMKKVDHITRNIASMNAN-AKTGSISSESREREAKAFLGDKYEDDWRYLAVTAF 1013
GK + K++ + + + AN K GS + RE YEDDWRY+A TAF
Sbjct: 878 C-GKIEKSPKLEGVEEDTS---ANVTKLGSNTYNERE---------NYEDDWRYMAATAF 924
Query: 1014 LVKCPGSRL 1022
LVKC GSRL
Sbjct: 925 LVKCVGSRL 933
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | ||||||
| TAIR|locus:2141395 | 1308 | AT4G01860 "AT4G01860" [Arabido | 0.666 | 0.554 | 0.560 | 3.2e-252 | |
| UNIPROTKB|A7Z052 | 1124 | WDR6 "WD repeat-containing pro | 0.120 | 0.116 | 0.355 | 6e-29 | |
| RGD|1307649 | 1125 | Wdr6 "WD repeat domain 6" [Rat | 0.119 | 0.115 | 0.350 | 2.6e-26 | |
| UNIPROTKB|E9PDU5 | 1070 | WDR6 "WD repeat-containing pro | 0.111 | 0.113 | 0.354 | 3.6e-20 | |
| UNIPROTKB|Q9NNW5 | 1121 | WDR6 "WD repeat-containing pro | 0.111 | 0.107 | 0.354 | 4.5e-20 | |
| UNIPROTKB|E2RQM6 | 1119 | WDR6 "Uncharacterized protein" | 0.160 | 0.156 | 0.331 | 1.1e-19 | |
| MGI|MGI:1930140 | 1125 | Wdr6 "WD repeat domain 6" [Mus | 0.165 | 0.16 | 0.304 | 5.2e-18 | |
| UNIPROTKB|F1SKI8 | 1019 | WDR6 "Uncharacterized protein" | 0.120 | 0.128 | 0.355 | 1.1e-16 | |
| SGD|S000006104 | 1013 | RTT10 "WD40 domain-containing | 0.106 | 0.114 | 0.338 | 3.6e-14 | |
| POMBASE|SPBC1306.02 | 984 | rtt10 "WD repeat protein, huma | 0.103 | 0.114 | 0.357 | 9.5e-12 |
| TAIR|locus:2141395 AT4G01860 "AT4G01860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2148 (761.2 bits), Expect = 3.2e-252, Sum P(2) = 3.2e-252
Identities = 424/756 (56%), Positives = 545/756 (72%)
Query: 241 DQQH-TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299
D H +A ++ RL GHEGSIFRI WS GSK+VSVSDDRSARIWE+ DS E V
Sbjct: 219 DHGHYSASHMLRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI--------DSQEVV 270
Query: 300 GSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359
G VL+GH+ RVWDCC++DS I+TAGEDCTCRVWG DG QL++IKEHIGRGIWRCLYD
Sbjct: 271 GP-VLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYDPN 329
Query: 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG--RTEIFSIKIPNFSEQIRLTDS 417
SSLLVTAGFDSAIKVHQ GS S N + E FS +PN ++ LTDS
Sbjct: 330 SSLLVTAGFDSAIKVHQLHN--RGSETSLDAVGVLNSPDKLEYFSTCLPNSTKHTGLTDS 387
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN-E 476
KSEYVRCL T EDT+Y+ATNHG LYH +L +V W +++++ E PII MD++S +
Sbjct: 388 KSEYVRCLQFTQEDTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGK 447
Query: 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536
+ C +DDWVALGDGKGNMTIVRV+GD++ P +W A ERQLLG +WCKSLG+R
Sbjct: 448 VRESCALDDWVALGDGKGNMTIVRVIGDMYNPHAGLNQSWKASPERQLLGAFWCKSLGYR 507
Query: 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596
F+F+ +P+G LKLW+L S +++T +V L+AEFSS FG RIMC+DAS EDEV+
Sbjct: 508 FVFSCNPRGLLKLWKLSGSLES----AAETYDVSLLAEFSSGFGKRIMCVDASVEDEVIL 563
Query: 597 CGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656
CGDLRGN+ LFPL +D+L+ SV+ +++ L YFKGAHGISTVS+LSVA+L SN+ EI
Sbjct: 564 CGDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGISTVSSLSVARLTSNKAEIC 623
Query: 657 STGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV-SAENNSIDLASCNYAAGFASTD 715
STG DGCICY EYD++ ++LEF+G+KQ+KEL+L+QSV S D + +YAAGFASTD
Sbjct: 624 STGADGCICYFEYDREMQTLEFMGLKQLKELNLVQSVCQGVQFSEDHPNNDYAAGFASTD 683
Query: 716 FIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKM 775
FI+WNL E KV QI CGGWRRPHS++LG++PE +NCFAYVKD+VIHIHRHW+ + K+
Sbjct: 684 FILWNLTAETKVTQISCGGWRRPHSFYLGEIPEWQNCFAYVKDDVIHIHRHWVGGQKTKV 743
Query: 776 FPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALN-KSSWIATGCEDGTVRLTRYSPGF 834
FP NLH QFHGRE+H+LCF+S + + G + ++S ++ +SSWIATGCEDG+VRL+RY+ F
Sbjct: 744 FPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSRYASEF 803
Query: 835 ENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISV 894
NWS+S+LLGEHVGGSAVRS+C VS ++ +S+ V N+ + ++ V +D E+P LLISV
Sbjct: 804 GNWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCDQDYAV-DDCESPRLLISV 862
Query: 895 GAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDXXXXXXXXXXXXFQWLSTDMPTKNSS 954
GAKRV+TSWLLR+ + E+ + NG++ FQWL+TDMPTK
Sbjct: 863 GAKRVVTSWLLRNGRHKKKGESCISD----NGHNRASSEVSPVT--FQWLATDMPTKYRP 916
Query: 955 THGKKKDMKKVDHITRNIASMNANAKTGSISSESRE 990
GK + K++ + + S N K GS + RE
Sbjct: 917 C-GKIEKSPKLEGVEED-TSANVT-KLGSNTYNERE 949
|
|
| UNIPROTKB|A7Z052 WDR6 "WD repeat-containing protein 6" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 6.0e-29, Sum P(4) = 6.0e-29
Identities = 48/135 (35%), Positives = 74/135 (54%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRALAAHERQAWVITGGDDS 320
Query: 371 AIKV-HQFQAFLPGS 384
I++ H PGS
Sbjct: 321 GIRLWHLVGRGHPGS 335
|
|
| RGD|1307649 Wdr6 "WD repeat domain 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 2.6e-26, Sum P(5) = 2.6e-26
Identities = 47/134 (35%), Positives = 73/134 (54%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQTWVITGGDDS 320
Query: 371 AIKV-HQFQAFLPG 383
I++ H PG
Sbjct: 321 GIRLWHLVGRGYPG 334
|
|
| UNIPROTKB|E9PDU5 WDR6 "WD repeat-containing protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 3.6e-20, Sum P(4) = 3.6e-20
Identities = 44/124 (35%), Positives = 70/124 (56%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 153 RISGHVGIIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 209
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 210 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVITGGDDS 269
Query: 371 AIKV 374
I++
Sbjct: 270 GIRL 273
|
|
| UNIPROTKB|Q9NNW5 WDR6 "WD repeat-containing protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 4.5e-20, Sum P(4) = 4.5e-20
Identities = 44/124 (35%), Positives = 70/124 (56%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RISGHVGIIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVITGGDDS 320
Query: 371 AIKV 374
I++
Sbjct: 321 GIRL 324
|
|
| UNIPROTKB|E2RQM6 WDR6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 63/190 (33%), Positives = 95/190 (50%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + +VT G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVVTGGDDS 320
Query: 371 AIKV-HQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRL---TDSKSEY----- 421
I++ H PGS S A F R+ ++K + RL TD+ + Y
Sbjct: 321 GIRLWHLVGRGYPGSGVS---ALCFKSRSRPGTLKAVTLAGSWRLLAVTDTGALYLYDLE 377
Query: 422 VRCLHLTSED 431
V+C ED
Sbjct: 378 VKCWEQLLED 387
|
|
| MGI|MGI:1930140 Wdr6 "WD repeat domain 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 56/184 (30%), Positives = 92/184 (50%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS R+W+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRLWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + +VT G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHRGRGIRAIATHERQAWVVTGGDDS 320
Query: 371 AIKV-HQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429
I++ H PG S K + + ++ + + +TD S Y+ L + S
Sbjct: 321 GIRLWHLAGRGYPGLGVSSLSFKSPSRPGALKAVTLAGSWRVLAVTDVGSLYLYDLEVKS 380
Query: 430 EDTL 433
+ L
Sbjct: 381 WEQL 384
|
|
| UNIPROTKB|F1SKI8 WDR6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 48/135 (35%), Positives = 74/135 (54%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVITGGDDS 320
Query: 371 AIKV-HQFQAFLPGS 384
I++ H PGS
Sbjct: 321 GIRLWHLVGRGHPGS 335
|
|
| SGD|S000006104 RTT10 "WD40 domain-containing protein involved in endosomal recycling" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 46/136 (33%), Positives = 70/136 (51%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
+ L+GHEGSIF + S+ G + S SDDRS R+W++ E K SV + H
Sbjct: 172 IHNLLGHEGSIFYVNLSNNGRYVASCSDDRSIRLWDL--ETGKQL--------SVGWSHT 221
Query: 309 ARVWDCCL--TDSFIITAGEDCTCRVWGS-DGKQ------LKMIKE-HIGRGIWRCLYDS 358
AR+W+ DS +I+ EDCTCRVW + ++ + + E H+ + IW
Sbjct: 222 ARIWNLMFFDNDSKLISVSEDCTCRVWNIIESRENVAELSISNVYEVHLIKSIWGVDVKD 281
Query: 359 LSSLLVTAGFDSAIKV 374
+ VT+G D +K+
Sbjct: 282 DEMIAVTSGNDGRLKL 297
|
|
| POMBASE|SPBC1306.02 rtt10 "WD repeat protein, human WDR6 family, involved in endocytic recycling" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 9.5e-12, Sum P(3) = 9.5e-12
Identities = 45/126 (35%), Positives = 68/126 (53%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
LVGHEG+ F +++SS G L SVS+DR+ R+W + + S + G +GH+ARV
Sbjct: 190 LVGHEGACFDLKFSSDGRYLCSVSEDRTLRLWSIES-----SPFLIATG----FGHSARV 240
Query: 312 WDCC-LTDSFIITAGEDCTCRVWGSDGKQLK---MIKEHIGRGIWRCLYDSLSSLLVTAG 367
W C L + I T ED T R+W + K L H G+ IW + S + ++ T G
Sbjct: 241 WRCVFLPNKEIATVSEDLTLRLWTWNDKTLTNTYTYTGHRGKHIWSLVVSSANPIIYTGG 300
Query: 368 FDSAIK 373
D +++
Sbjct: 301 NDGSVR 306
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1088 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 60/265 (22%), Positives = 95/265 (35%), Gaps = 50/265 (18%)
Query: 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVH-SPERCLLYSMKLWG 188
+ V DV LA G SD +IR+WD+ + L H S + +S
Sbjct: 51 TGPVRDV---AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS----- 102
Query: 189 DNLEALRIASGTIY-NEIIVWKVDWE--------HVAPLLN---SPEGNHAHGSSSDFKC 236
RI S + I VW V+ H + + SP+G SS D
Sbjct: 103 ---PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD-GT 158
Query: 237 FKLQDQQHTAVNLFRLV----GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292
KL D + + V GH G + + +S G KL+S S D + ++W++
Sbjct: 159 IKLWD-----LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
Query: 293 SDSIEEVGSSVLYGHNARVWDCCLTDS--FIITAGEDCTCRVW-GSDGKQLKMIKEHIGR 349
L GH V + + + ED T RVW G+ ++ + H
Sbjct: 214 ----------TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
Query: 350 GIWRCLYDSLSSLLVTAGFDSAIKV 374
+ + L + D I++
Sbjct: 264 -VTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 52/266 (19%), Positives = 89/266 (33%), Gaps = 59/266 (22%)
Query: 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGD 189
+ V V F + LA G D +I+VWD+ ++ L+ H+
Sbjct: 9 TGGVTCVAFS---PDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-------------- 51
Query: 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249
V V L S S K +L D + T +
Sbjct: 52 ---------------GPVRDVAASADGTYL---------ASGSSDKTIRLWDLE-TGECV 86
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309
L GH + + +S G L S S D++ ++W+V + L GH
Sbjct: 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE----------TGKCLTTLRGHTD 136
Query: 310 RVWDCCL--TDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V +F+ ++ +D T ++W GK + + H G + + L+++
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSS 195
Query: 367 GFDSAIKVHQFQAF-LPGSLESHPEA 391
D IK+ G+L H
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENG 221
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 65/335 (19%), Positives = 108/335 (32%), Gaps = 92/335 (27%)
Query: 9 WRLDVGQYL----GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH 64
W L+ G+ L G + V + + L S + L+DLE G +R
Sbjct: 36 WDLETGELLRTLKGHTGPVRDVAASADGTYL--ASGSSDKTIRLWDLETGECVR---TLT 90
Query: 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124
G + S F S R+ + +K +K++++
Sbjct: 91 GHTSYVSSVAF------SPDGRIL--SSSSRDKTIKVWDVE---------------TGKC 127
Query: 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLY 182
+ +L + WV V F +A D +I++WD+ + L H+ E
Sbjct: 128 LTTLRGHTDWVNSVAFSP---DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE----- 179
Query: 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH--AHGSSSDFKCFKLQ 240
V V + SP+G + S K + L
Sbjct: 180 ------------------------VNSVAF--------SPDGEKLLSSSSDGTIKLWDLS 207
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
+ L GHE + + +S G L S S+D + R+W D + E V
Sbjct: 208 TGKCLGT----LRGHENGVNSVAFSPDGYLLASGSEDGTIRVW--------DLRTGECVQ 255
Query: 301 SSVLYGHNARVWDCCLTDS--FIITAGEDCTCRVW 333
L GH V + + + D T R+W
Sbjct: 256 --TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 14/132 (10%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
L GH G + + +S G L + S D + ++W D L GH V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW----------DLETGELLRTLKGHTGPV 54
Query: 312 WDC--CLTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368
D +++ + D T R+W G+ ++ + H + + +L ++
Sbjct: 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSR 113
Query: 369 DSAIKVHQFQAF 380
D IKV +
Sbjct: 114 DKTIKVWDVETG 125
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (169), Expect = 4e-12
Identities = 55/341 (16%), Positives = 103/341 (30%), Gaps = 36/341 (10%)
Query: 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMK 185
L + + F L G SD +I++WD+ N +++ S K
Sbjct: 59 LLLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS-K 114
Query: 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF----KCFKLQD 241
L + + I + + V D L+ + EG+ +S F K
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174
Query: 242 QQHTAVNLFR---------LVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWK 291
+ L+ L GH + + +S G + S S D + R+W++
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234
Query: 292 DSDSIEEVGSSVLYGHNARVWDCCLTDS-FIITAGEDCTCRVW--GSDGKQLKMIKEHIG 348
S L GH+ V D + + D T R+W S L+ + H
Sbjct: 235 ---------RSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-S 284
Query: 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408
+ + LL + D +++ + + + + S+
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLE-----TGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449
+ S +R L + L H +
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP 380
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (156), Expect = 1e-10
Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 34/246 (13%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER-- 178
L+++L S V + F +G + D +I++WD+ + +
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201
Query: 179 -CLLYSMKLWGDNLEALRIASGTIYNEIIVWKV-DWEHVAPLLN----------SPEGNH 226
L +S L IASG+ I +W + + + L+ SP+G+
Sbjct: 202 SSLAFS------PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL 255
Query: 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286
SSD +L D + ++ L L GH S+ + +S G L S S D + R+W
Sbjct: 256 LASGSSD-GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW--- 311
Query: 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS---FIITAGEDCTCRVWGSDGKQLKMI 343
D ++ + + S L GH V + + +D T R+W +
Sbjct: 312 -----DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 344 KEHIGR 349
E
Sbjct: 367 LEGHSN 372
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 301 SSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYD 357
L GH V + + T D T +VW + +L +K H G +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAAS 60
Query: 358 SLSSLLVTAGFDSAIKV 374
+ + L + D I++
Sbjct: 61 ADGTYLASGSSDKTIRL 77
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284
L L GH G + + +S G L S SDD + ++W+
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 2e-04
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283
L L GH G + + +S G+ L S SDD + R+W
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 4e-04
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
SL+++L S V V F + LA G SD ++R+WD+ ++ +
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPD---GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331
Query: 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEH----------VAPLLNSPEGNHAHGSSS 232
S + + L ++ G+ I +W + V + SP+G S+
Sbjct: 332 SSLSFSPDGSLL-VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390
Query: 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292
D +L D ++ L L GH + +++S G L S S D + R+W+++
Sbjct: 391 DGTV-RLWDLSTGSL-LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448
Query: 293 SDSIEE 298
S S +
Sbjct: 449 SFSPDG 454
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.004
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 303 VLYGHNARVWDCCL--TDSFIITAGEDCTCRVW 333
L GH V + + + +D T RVW
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.98 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.98 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.97 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.89 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.89 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.88 | |
| PTZ00421 | 493 | coronin; Provisional | 99.88 | |
| PTZ00420 | 568 | coronin; Provisional | 99.88 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.87 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.87 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.86 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.86 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.86 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.85 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.85 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.85 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.82 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.82 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.78 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.78 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.78 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.77 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.77 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.77 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.76 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.75 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.74 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.74 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.73 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.71 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.71 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.69 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.69 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.67 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.66 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.66 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.65 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.64 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.64 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.64 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.62 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.59 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.59 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.58 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.56 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.56 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.55 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.51 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.51 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.5 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.49 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.48 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.48 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.48 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.46 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.45 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.45 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.42 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.38 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.33 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.3 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.29 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.26 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.26 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.23 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.21 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.17 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.16 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.14 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.12 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.1 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.1 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.07 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.04 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.0 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.97 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.96 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.93 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.93 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.88 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.87 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.87 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.87 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.87 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.86 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.85 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.85 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.83 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.82 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.81 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.75 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.75 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.75 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.73 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.72 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.71 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.68 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.67 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.66 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.66 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.64 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.62 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.62 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.58 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.57 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.57 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.55 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.54 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.52 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.52 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.5 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.49 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.48 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.47 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.43 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.42 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.42 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.41 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.39 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.39 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.38 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.37 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.33 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.28 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.26 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.19 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.19 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.19 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.19 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.15 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.13 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.13 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.11 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.11 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.09 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.01 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.98 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.95 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.91 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.87 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.81 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.73 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.69 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.64 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.63 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.61 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.58 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.57 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.56 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.41 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.39 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.37 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.33 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.27 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.2 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.17 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.11 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.11 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.1 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.07 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.05 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.97 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.97 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.96 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.92 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.81 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.77 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.61 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.59 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.57 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.57 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.49 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.4 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.32 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.31 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.27 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.25 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.15 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.13 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.11 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.02 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.7 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.6 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.52 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.44 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.13 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.12 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.93 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 94.9 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.51 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.4 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.2 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.02 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.01 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.83 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 93.76 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 93.71 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.37 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.25 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 93.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.08 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.98 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 92.98 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.71 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 92.5 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 92.49 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.37 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.25 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 92.15 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 91.78 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.31 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 91.14 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 90.9 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.63 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 89.92 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 89.9 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.81 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.75 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.69 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 89.21 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 89.04 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 88.76 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 88.41 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.91 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 87.51 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.2 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 87.02 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 85.76 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.75 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 85.61 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 85.49 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.08 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 84.68 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 83.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 83.93 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 83.34 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 83.07 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 82.82 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 82.71 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 82.37 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 82.25 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 81.99 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 81.71 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 81.7 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 81.62 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 81.25 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 80.97 |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=387.59 Aligned_cols=528 Identities=18% Similarity=0.258 Sum_probs=385.5
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-ee-EEEEeeeCCcceEEEEec
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TL-IRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-~~-~~~~~~~~~~~V~~i~~s 74 (1088)
.|.+-++..+. |..+++-..|| |. |.|+|+|. .|.|||||.... .. -.+|+.+.+ +|..|+|+
T Consensus 40 sv~ir~i~~~~~~~iYtEH~~~vtVAkyS--Ps----G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG-~I~Di~Wd 112 (603)
T KOG0318|consen 40 SVIIRNIDNPASVDIYTEHAHQVTVAKYS--PS----GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG-PIKDISWD 112 (603)
T ss_pred EEEEEECCCccceeeeccccceeEEEEeC--CC----ceEEeecCCcCcEEEEeccCcceeeeeeeeeccc-ccccceeC
Confidence 45555665554 77889999999 98 88999999 599999998653 33 346788777 89999999
Q ss_pred ccccccCCCccceeeEEEEECC---C--EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC-
Q 001391 75 FINCTEGSVSTRVTFEVALFGE---K--RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR- 148 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd---~--~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~- 148 (1088)
.|+ .++++.|+ + .+.+||-. .-+..+.||...|++++|-| ...
T Consensus 113 -------~ds----~RI~avGEGrerfg~~F~~DSG-----------------~SvGei~GhSr~ins~~~Kp---sRPf 161 (603)
T KOG0318|consen 113 -------FDS----KRIAAVGEGRERFGHVFLWDSG-----------------NSVGEITGHSRRINSVDFKP---SRPF 161 (603)
T ss_pred -------CCC----cEEEEEecCccceeEEEEecCC-----------------CccceeeccceeEeeeeccC---CCce
Confidence 787 55555553 2 35555533 34566789999999999998 554
Q ss_pred EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 149 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
+++||+.|++|-+|+-...+...++..|.+ .+.+++| +|||.++++.+.||.|.+||-.
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-FV~~VRy---sPDG~~Fat~gsDgki~iyDGk----------------- 220 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSK-FVNCVRY---SPDGSRFATAGSDGKIYIYDGK----------------- 220 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeeccccccc-ceeeEEE---CCCCCeEEEecCCccEEEEcCC-----------------
Confidence 799999999999998776666666665654 5777777 8999999999999999999988
Q ss_pred CCCCCCceeEecccccceeeeEEEe---CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
+++.+..+. +|++.|++++|+||++.++|+|.|.+++|||+.+.++ .+.+ .+.
T Consensus 221 ----------------tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl-----v~t~---~~~ 276 (603)
T KOG0318|consen 221 ----------------TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL-----VSTW---PMG 276 (603)
T ss_pred ----------------CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce-----EEEe---ecC
Confidence 666677776 8999999999999999999999999999999999654 2221 111
Q ss_pred c-cCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCC
Q 001391 306 G-HNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG 383 (1088)
Q Consensus 306 ~-h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~ 383 (1088)
. -...-..+-|.+..|++.+.+|+|..++. +..++..+.+|.. +|+++..++++.+|++|+.||.|.-|+.......
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 1 11333455566889999999999999999 7789999999998 7999999999999999999999999999543222
Q ss_pred cc--cCCccc---cccCCCcceEEeeeCCCccceeecc---------CCCCceEEEEeccCCeEEEEecCCeEEEEEecc
Q 001391 384 SL--ESHPEA---KEFNGRTEIFSIKIPNFSEQIRLTD---------SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1088)
Q Consensus 384 ~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~ 449 (1088)
.+ ++|... .......+++++...+.-..+...+ .-.....+++..+++.+++.+..+.|.. +.+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~--l~~ 433 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL--LQD 433 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE--Eec
Confidence 22 222221 1122223444443322221111100 1122346888888875555554555443 222
Q ss_pred CCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEE
Q 001391 450 MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYW 529 (1088)
Q Consensus 450 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
.. .+...+......++++.+ ++..+++|+.||.+++|.++.+.+....... .+...+ +..
T Consensus 434 ~~-----~~~~~~~~y~~s~vAv~~--------~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-----~h~a~i--T~v 493 (603)
T KOG0318|consen 434 QT-----KVSSIPIGYESSAVAVSP--------DGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-----EHRAAI--TDV 493 (603)
T ss_pred CC-----cceeeccccccceEEEcC--------CCCEEEEecccceEEEEEecCCcccceeeee-----cccCCc--eEE
Confidence 21 222333455566666644 4589999999999999999987654332211 111222 235
Q ss_pred eecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeC
Q 001391 530 CKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (1088)
Q Consensus 530 ~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~ 609 (1088)
.+|||+.||+++...+.+.+||+..... . ...+ .-|..+|.|++|||++.++|+||-|-+|.||++
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~-~------------~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREV-K------------TNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCce-e------------ccee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 7999999999999999999999986532 1 1111 138999999999999999999999999999999
Q ss_pred CcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEee
Q 001391 610 LRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (1088)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~ 670 (1088)
++... .-..+++|. ..|++|.|. +...++|+|.|.+||+|.+.
T Consensus 560 ~kP~~-------------~i~iknAH~-~gVn~v~wl----de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 560 KKPAK-------------HIIIKNAHL-GGVNSVAWL----DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cChhh-------------heEeccccc-cCceeEEEe----cCceEEeccCcceeEEeccc
Confidence 97422 134567777 459999999 34789999999999999874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=404.54 Aligned_cols=584 Identities=16% Similarity=0.222 Sum_probs=435.0
Q ss_pred EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCee-EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL-IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~-~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~i 101 (1088)
++|+ ++ |..|++..+..|.+-|+++++. +..........+.+++++ ||.. .++.++..+.+++
T Consensus 25 ~~~s--~n----G~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~-------~d~~---~L~~a~rs~llrv 88 (775)
T KOG0319|consen 25 VAWS--SN----GQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALT-------PDEE---VLVTASRSQLLRV 88 (775)
T ss_pred eeEC--CC----CCEEEEecCceEEEEEccCCceecccCCccchhhhheeeec-------CCcc---EEEEeeccceEEE
Confidence 7899 88 9999999988999999999988 554444445579999999 7762 5555666899999
Q ss_pred EEeccCCCCCCCCCCccccccceeeeccC-CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCcee
Q 001391 102 FELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1088)
Q Consensus 102 w~l~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 180 (1088)
|++.+ .++++..+. |..+|.-++|+| .+.+|++|+.|+.+++||+..+.+...+.++.+ +
T Consensus 89 ~~L~t---------------gk~irswKa~He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-v 149 (775)
T KOG0319|consen 89 WSLPT---------------GKLIRSWKAIHEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-V 149 (775)
T ss_pred EEccc---------------chHhHhHhhccCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCc-e
Confidence 99995 467888888 999999999999 899999999999999999999999999987654 5
Q ss_pred EEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEE
Q 001391 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (1088)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 260 (1088)
+.++.|++. ....+|++|..|+++++||++. ...++..+..|...|+
T Consensus 150 Vssl~F~~~-~~~~lL~sg~~D~~v~vwnl~~--------------------------------~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 150 VSSLLFHPH-WNRWLLASGATDGTVRVWNLND--------------------------------KRTCLHTMILHKSAVT 196 (775)
T ss_pred EEEEEeCCc-cchhheeecCCCceEEEEEccc--------------------------------CchHHHHHHhhhhhee
Confidence 777887654 3457899999999999999981 2225778889999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-------CCEEEEEeCCCcEEEE
Q 001391 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 261 ~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-------~~~l~sg~~Dg~i~vW 333 (1088)
+++|++|+..+++++.|+.+.+||+...+. . ...+-...+-++.+- +.+++++|.+|.+++|
T Consensus 197 sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~--------l---~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~ 265 (775)
T KOG0319|consen 197 SLAFSEDSLELLSVGRDKVIIVWDLVQYKK--------L---KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYW 265 (775)
T ss_pred eeeeccCCceEEEeccCcEEEEeehhhhhh--------h---heechhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence 999999999999999999999999966543 1 111111223333332 3599999999999999
Q ss_pred cC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccce
Q 001391 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1088)
Q Consensus 334 d~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1088)
|. .++++...+......+..+...+....++....|..+.++|.+.-.+ .
T Consensus 266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i-----------------------------~ 316 (775)
T KOG0319|consen 266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI-----------------------------V 316 (775)
T ss_pred ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE-----------------------------e
Confidence 99 55555444333232377777766666677788899999998753211 0
Q ss_pred eeccCCCCceEEEEecc--CCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEe
Q 001391 413 RLTDSKSEYVRCLHLTS--EDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1088)
Q Consensus 413 ~~~~~~~~~V~~l~~s~--~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1088)
..+-+..+.|..++|-. +..+.++|+.+.+..+++ .+..+ .++.+| ...+.++++..+ +.++++|
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~---~~~~c-~ii~GH-~e~vlSL~~~~~--------g~llat~ 383 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL---PTSYC-QIIPGH-TEAVLSLDVWSS--------GDLLATG 383 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEec---CCCce-EEEeCc-hhheeeeeeccc--------CcEEEEe
Confidence 11122334577777765 348889999999886543 33333 477777 467888875333 3799999
Q ss_pred cCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCccccee
Q 001391 491 DGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570 (1088)
Q Consensus 491 ~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 570 (1088)
+.|..+++|.++++....... -....+.+..+.+.+....-.+|++++.|+++++|+++..++... ...
T Consensus 384 sKD~svilWr~~~~~~~~~~~----a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~~ 452 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCV----AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PIV 452 (775)
T ss_pred cCCceEEEEEecCCcchhhhh----hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cce
Confidence 999999999995543221111 111222233343333334557899999999999999987332211 111
Q ss_pred eeeee-ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEecc
Q 001391 571 LVAEF-SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR 649 (1088)
Q Consensus 571 l~~~~-~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~ 649 (1088)
+...+ ...|+..|+|++++|+++++||||.|.+.+||+++.. ....+++||.. .|-+|.|+
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-------------~l~~vLsGH~R--Gvw~V~Fs--- 514 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-------------RLLGVLSGHTR--GVWCVSFS--- 514 (775)
T ss_pred ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------------eEEEEeeCCcc--ceEEEEec---
Confidence 11122 3489999999999999999999999999999999843 23678888874 79999999
Q ss_pred CCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEE
Q 001391 650 SNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQ 729 (1088)
Q Consensus 650 ~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~ 729 (1088)
+....++|+|.|++|+||.+.... +++
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fS----Clk------------------------------------------------- 541 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFS----CLK------------------------------------------------- 541 (775)
T ss_pred cccceeEeccCCceEEEEEeccce----eee-------------------------------------------------
Confidence 566789999999999999996521 110
Q ss_pred EeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEecccccccccccccc
Q 001391 730 IPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSA 809 (1088)
Q Consensus 730 ~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~ 809 (1088)
..-+|...|--+.|..+
T Consensus 542 ---------------------------------------------------T~eGH~~aVlra~F~~~------------ 558 (775)
T KOG0319|consen 542 ---------------------------------------------------TFEGHTSAVLRASFIRN------------ 558 (775)
T ss_pred ---------------------------------------------------eecCccceeEeeeeeeC------------
Confidence 01278888888899855
Q ss_pred CCCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcE
Q 001391 810 LNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPF 889 (1088)
Q Consensus 810 ~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1088)
+.-|++++.||-||||.+..+ ....+|.+|. -.|=++.. +.+.-
T Consensus 559 ---~~qliS~~adGliKlWnikt~----eC~~tlD~H~--DrvWaL~~---------------------------~~~~~ 602 (775)
T KOG0319|consen 559 ---GKQLISAGADGLIKLWNIKTN----ECEMTLDAHN--DRVWALSV---------------------------SPLLD 602 (775)
T ss_pred ---CcEEEeccCCCcEEEEeccch----hhhhhhhhcc--ceeEEEee---------------------------cCccc
Confidence 789999999999999999873 4688999999 77766654 22334
Q ss_pred EEEEecceeEEEEEEEEec
Q 001391 890 LLISVGAKRVLTSWLLRHR 908 (1088)
Q Consensus 890 ll~s~g~d~~i~~W~~~~~ 908 (1088)
.++|||+|++|..|+=..+
T Consensus 603 ~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 603 MFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred eeEecCCCeEEEEeecCcH
Confidence 8999999999999986554
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=419.16 Aligned_cols=740 Identities=28% Similarity=0.386 Sum_probs=504.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
+.+++.++++. .+||++|+++.|.+||+.++..+..+..++..++| . +.+ .+-..+
T Consensus 6 ~~~~l~~~~~~--------~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~-------~e~-----~~~l~~ 61 (967)
T KOG0974|consen 6 SLGPLNLPQLV--------SDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----R-------GEG-----KVKLLS 61 (967)
T ss_pred ccccccchhhc--------cceeeecCCCceEEeeCCchhHhhhhhhhcccccc----c-------ccc-----cceecc
Confidence 56777777777 36999999999999999999999888887776777 2 221 111111
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
...|......... . .......+....+||....+.. +...++.+..++.+.+||...+.....+.+
T Consensus 62 ~~~v~~~~~~~v~--~---------~~~~~~~~~~~s~wi~g~~l~~---e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~ 127 (967)
T KOG0974|consen 62 GKIVTCAKSDEVY--V---------KEASNQIIERFSDWIFGAKLFE---ENKKIALVTSRNSLLIRDSKNSSVLSKIQS 127 (967)
T ss_pred ceEEEEEeeccee--e---------cchhhhhhhhccccccccchhh---hcceEEEEEcCceEEEEecccCceehhcCC
Confidence 2222222221100 0 0111122334557888777776 778899999999999999999999999999
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
++++.++++..+.++++..++++|+..+.|.+|++. ....+. .+.||
T Consensus 128 ~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~--------------------------------~dn~p~-~l~GH 174 (967)
T KOG0974|consen 128 DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH--------------------------------EDNKPI-RLKGH 174 (967)
T ss_pred CceEEEEeEEEEeccCcEEEEEeccccccEEEEecc--------------------------------ccCCcc-eeccc
Confidence 999999999999999999999999999999999987 122333 78899
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~ 335 (1088)
++.|+.+.++.||++++|+|+|+++|+|++.+.+. .. .+.++|+++||.++|.++.++|+++|+++++|+.
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~--------~~-~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV--------LG-CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGV 245 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccc--------cC-cccccccceeEEEEeccceeEEeccceEEEEEec
Confidence 99999999999999999999999999999999643 22 2889999999999999889999999999999999
Q ss_pred CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeec
Q 001391 336 DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT 415 (1088)
Q Consensus 336 ~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (1088)
++..+..+.+|.++.||.++..++...++|++.|+.+++|++.+..... +... ......+.
T Consensus 246 ~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~---~~~~--------~~~~~s~~-------- 306 (967)
T KOG0974|consen 246 NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG---HVEQ--------SSLLSSIV-------- 306 (967)
T ss_pred ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccc---ceee--------eeeecchh--------
Confidence 9999999999999999999999999999999999999999995532211 1100 00000000
Q ss_pred cCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCC-CCCcCCCCCeEEEecCCC
Q 001391 416 DSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE-PKYPCGIDDWVALGDGKG 494 (1088)
Q Consensus 416 ~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~~s~~~~~~la~g~~dg 494 (1088)
......|.....++...+.+..+. +... ....++..+...... +..++..+++++.++..+
T Consensus 307 -----kl~~~~f~k~~~~~~~~~~~~~~~--~~~~-----------~~~~~l~~~~~~s~~~i~~~~~~~~~v~~~~~k~ 368 (967)
T KOG0974|consen 307 -----KLKDDQFVKCDTLLNFANHGGKLS--ILGN-----------KGEKELITFESDSMLRIIFSCTNDDWVAHMSNKG 368 (967)
T ss_pred -----hhcceeeeehHHHHHHHhcCCeEe--eccc-----------ccccceeeeeeccCccceehccccceeeeccCCC
Confidence 000111221112222222222110 0000 111222333322222 344456778999999999
Q ss_pred CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeee
Q 001391 495 NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAE 574 (1088)
Q Consensus 495 ~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~ 574 (1088)
.+.+..+.+....+...+..++......+.... .+..+-..+|..++|......+. ..+...+...+.
T Consensus 369 ~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~~--------~~~~~~~~~g~~~~r~~~~~~~~----~ad~~~i~~~~~ 436 (967)
T KOG0974|consen 369 DIYVAWHQNTIVITTSSLHRKLSANPISQVCEA--------SYVASKLIDGSIQVRNLSGSLES----FADVLNIRSLKE 436 (967)
T ss_pred cEEEEEeecccCccchhHHHHHhhCcccceeee--------eeehhhccCCcchhhhhhccccc----ccceeEEeeeee
Confidence 998877765433222222212222222222111 11222334666777764432211 112234445556
Q ss_pred eccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceE
Q 001391 575 FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654 (1088)
Q Consensus 575 ~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~ 654 (1088)
|......+++|+.-.+.+..++.|+.-|++.+|++..+.. ...-+.+ ..|..++++++.+....++..+
T Consensus 437 f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~------~~~~~~~-----~~~~~~~~~si~~~~~kdn~~~ 505 (967)
T KOG0974|consen 437 FRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPND------DIVLSLS-----RSHELDTGSSITCIRSKDNSAI 505 (967)
T ss_pred eccccCCCCcceecccCcceEEEccCcCcEEEecCCCCCc------cceeecc-----CcccccccccEEEEecCCCcEE
Confidence 6666777899999899889999999999999999987533 1111111 1455578999999998899999
Q ss_pred EEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEeeCC
Q 001391 655 IRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGG 734 (1088)
Q Consensus 655 l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg 734 (1088)
+.++++||++.++++.+.......+.....+....+...+++....++.++.+++||.+..|++||++.+.+++...|||
T Consensus 506 ~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~~~~~~~~~k~n~~~~gf~st~f~l~n~T~~~~i~~~~cGg 585 (967)
T KOG0974|consen 506 FMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGALPSKFINWKGNLLIVGFYSTSFILWNETNETPIFETYCGG 585 (967)
T ss_pred EEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecchhhhhccCCCceEEEEEEeccceEeccccCceeEEEEeCC
Confidence 99999999999999998876656665555555555555566655666678889999999999999999999999999999
Q ss_pred cCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccCCCce
Q 001391 735 WRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSS 814 (1088)
Q Consensus 735 ~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~~~~ 814 (1088)
.||.|++... .+ ...+.+.+.+..+++...-... -+..+..+.|++||+++.|.+-++... ......+.
T Consensus 586 ~hr~wal~g~--t~-~~~~~re~~~~~~i~~~~~~~~----~s~~~~nglh~~~irai~~~~~~ttv~----~~~~~~~t 654 (967)
T KOG0974|consen 586 SHRIWALNGS--TD-NQFNFREIASSQLIRQKIDNLS----RNSWISNGLHGREIRAISFSPYSTTVS----LDEHLSGS 654 (967)
T ss_pred eeEEeecCCc--cc-cceeeeecccccEEEEEeeccc----ccccccCCCCCCceeeeEeccccccee----cccCCcce
Confidence 9999999642 22 3344445555556553221111 133566789999999999986321111 12223468
Q ss_pred EEEeccCCceEEEEEecCCCc-ccccccccccccCC-------ceeeeEE---Eeeeee------------eccccccCc
Q 001391 815 WIATGCEDGTVRLTRYSPGFE-NWSSSKLLGEHVGG-------SAVRSIC---FVSEIN------------QISAVVDNV 871 (1088)
Q Consensus 815 ~i~TG~eD~tIrl~~~~~~~~-~~~~~~~~~~H~~g-------s~v~~~~---f~~~~~------------~~~~~~~~~ 871 (1088)
.++++++|+++++........ ...+.+..+.|-.| .+-|.+. ++|+.. +..+- ...
T Consensus 655 ~~~~a~~~~~~~l~sv~~v~~~~~~t~~~~~d~~~g~~~~~~~~gkr~i~~~~~l~~~s~e~~~~~~~s~~~~~~~-~~~ 733 (967)
T KOG0974|consen 655 AVRSASCDGNIKLISVIFVNENLQCTDWYDEDDENGTVYLLTGGGKRKISSENILWRSSHELDEVWDRSLRRHRPV-KYD 733 (967)
T ss_pred eEEeeeccccceeEEEEecccCcccCCCCCcCCCCCcEEEEEeccceeechhhhHhhhhhhhcccChhHhhhcCce-eEC
Confidence 999999999999998865322 22334444444433 3445555 776653 11122 678
Q ss_pred cccccccCcccc---CCCCcEEEEEecceeEEEEEEEEe
Q 001391 872 SEEINRQNGVAE---DKENPFLLISVGAKRVLTSWLLRH 907 (1088)
Q Consensus 872 ~~~~~~~~~~~~---~~~~~~ll~s~g~d~~i~~W~~~~ 907 (1088)
|++||||+++.+ ...+.++..++++++++++|.++.
T Consensus 734 p~~Ri~~v~v~~laq~g~~~lv~s~~s~~~ti~i~~~~~ 772 (967)
T KOG0974|consen 734 PETRIMDVAVCELAQEGLGVLVASLVSSGSTIKIFLYDN 772 (967)
T ss_pred CCccEEEeeeeeecccCCcceEEEEecCCceEEEEeecc
Confidence 999999999955 334558888999999999999984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=370.33 Aligned_cols=511 Identities=15% Similarity=0.165 Sum_probs=389.4
Q ss_pred CCceEEecCCCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 4 KDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 4 ~~i~iWdl~~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.-+++|++.+|+ |.+||.-++|+ |. +.+|++|+ |+.|+|||+..+.+++.|++|.+ .|+.+.|.
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~--~~----g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-vVssl~F~ 156 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFD--PT----GTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-VVSSLLFH 156 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeEEEEEc--CC----CceEEeccccceEEEEEeeCCEEEEEecCCCc-eEEEEEeC
Confidence 458999999998 88999999999 88 78899988 89999999999999999999888 69999999
Q ss_pred ccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
|. +.. .+|++++ |+++++||+.... .++..+..|...|++++|.+ |+..++++
T Consensus 157 ~~-----~~~----~lL~sg~~D~~v~vwnl~~~~--------------tcl~~~~~H~S~vtsL~~~~---d~~~~ls~ 210 (775)
T KOG0319|consen 157 PH-----WNR----WLLASGATDGTVRVWNLNDKR--------------TCLHTMILHKSAVTSLAFSE---DSLELLSV 210 (775)
T ss_pred Cc-----cch----hheeecCCCceEEEEEcccCc--------------hHHHHHHhhhhheeeeeecc---CCceEEEe
Confidence 54 221 3444444 8999999998643 36888899999999999999 99999999
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC--CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL--EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~--~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
+.|..+.+||+.+-+....+. ....+-++.+..... .+.++++.+.+|.+++||.++
T Consensus 211 ~RDkvi~vwd~~~~~~l~~lp--~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es------------------- 269 (775)
T KOG0319|consen 211 GRDKVIIVWDLVQYKKLKTLP--LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES------------------- 269 (775)
T ss_pred ccCcEEEEeehhhhhhhheec--hhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc-------------------
Confidence 999999999997766665553 222233333322222 256999999999999999982
Q ss_pred CCCceeEecccccceeeeEEEeCC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 232 SDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
+..+...+.. ...+..+...+....++....|..+.++|.++. +..+ .+.|....
T Consensus 270 --------------~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l--------~i~k--~ivG~ndE 325 (775)
T KOG0319|consen 270 --------------GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL--------TIVK--QIVGYNDE 325 (775)
T ss_pred --------------chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc--------EEeh--hhcCCchh
Confidence 2222221111 223666666676677788888899999998884 4454 67788899
Q ss_pred eEEEEECC---CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccC
Q 001391 311 VWDCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLES 387 (1088)
Q Consensus 311 I~~v~~~~---~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~ 387 (1088)
|.+|+|-| ++++.++..+.+|+++..+..-..+.+|.. .|.+++...+|.+|+||+.|.++++|.++..+.+.
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e-~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--- 401 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTE-AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--- 401 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchh-heeeeeecccCcEEEEecCCceEEEEEecCCcchh---
Confidence 99999984 899999999999999986665668899998 79999977788999999999999999984321110
Q ss_pred CccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC--eEEEEecCCeEEEEEeccCCcceeEEe-----ee
Q 001391 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKI-----LQ 460 (1088)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~--~ll~~t~~g~i~~~~~~~~~~~~~~~~-----~~ 460 (1088)
..+....+|...|.+++++..+ .++.+++|..+..|.+..........+ ..
T Consensus 402 ----------------------~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 402 ----------------------LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred ----------------------hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 1122234667788899887654 455556777787776655322222111 12
Q ss_pred ecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEE
Q 001391 461 VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT 540 (1088)
Q Consensus 461 ~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s 540 (1088)
..++..|.++++.++ +.++|+|+.|.+.+||++++..+.. -..+|.+.+.. ..|++..+.++|
T Consensus 460 ~aHdKdIN~Vaia~n--------dkLiAT~SqDktaKiW~le~~~l~~-------vLsGH~RGvw~--V~Fs~~dq~laT 522 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPN--------DKLIATGSQDKTAKIWDLEQLRLLG-------VLSGHTRGVWC--VSFSKNDQLLAT 522 (775)
T ss_pred HhhcccccceEecCC--------CceEEecccccceeeecccCceEEE-------EeeCCccceEE--EEeccccceeEe
Confidence 335778999998665 4899999999999999998443221 11244444544 347888899999
Q ss_pred ECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccc
Q 001391 541 ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVA 620 (1088)
Q Consensus 541 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~ 620 (1088)
++.|++|+||.+++ ++|.++|. +|...|.-..|-.+|+.|++++.||-|+||++.++.
T Consensus 523 ~SgD~TvKIW~is~--------------fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e------- 580 (775)
T KOG0319|consen 523 CSGDKTVKIWSIST--------------FSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE------- 580 (775)
T ss_pred ccCCceEEEEEecc--------------ceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-------
Confidence 99999999999983 46777764 899999999999999999999999999999998752
Q ss_pred cccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEE
Q 001391 621 LHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (1088)
Q Consensus 621 ~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~ 668 (1088)
....+..|. +.|-+++.+ +...+++|+|.||.|.+|.
T Consensus 581 ------C~~tlD~H~--DrvWaL~~~---~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 581 ------CEMTLDAHN--DRVWALSVS---PLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ------hhhhhhhcc--ceeEEEeec---CccceeEecCCCeEEEEee
Confidence 133444444 678888777 4556899999999999997
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=364.23 Aligned_cols=559 Identities=18% Similarity=0.270 Sum_probs=410.9
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
+++++.+...|.+||+.++.. .+.+. ...-...|+|++-+| +.-+||+|.+||.|+||+..++.
T Consensus 35 r~va~~a~E~vn~WdlRtge~------------~~~l~-~~~~k~evt~l~~~~---d~l~lAVGYaDGsVqif~~~s~~ 98 (888)
T KOG0306|consen 35 RAVAVSALEQVNIWDLRTGEI------------EKKLI-LLKKKAEVTCLRSSD---DILLLAVGYADGSVQIFSLESEE 98 (888)
T ss_pred cEEEEeccccEeEEeeecchh------------hhhhh-hhcccceEEEeeccC---CcceEEEEecCceEEeeccCCCc
Confidence 788888889999999997531 01111 112235799999999 88999999999999999999998
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
...++.+|... +..+.| +..|.++++|+.|+.|.+||+- ...-
T Consensus 99 ~~~tfngHK~A-Vt~l~f---d~~G~rlaSGskDt~IIvwDlV---------------------------------~E~G 141 (888)
T KOG0306|consen 99 ILITFNGHKAA-VTTLKF---DKIGTRLASGSKDTDIIVWDLV---------------------------------GEEG 141 (888)
T ss_pred eeeeecccccc-eEEEEE---cccCceEeecCCCccEEEEEec---------------------------------ccee
Confidence 88888777653 445555 6789999999999999999998 5677
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg 328 (1088)
+.++.||++.|+..-|..+.++++++|.|+.|++||+.+. .++. +...|.+.||.+++.+..+++++.|+
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq--------hCf~--Thvd~r~Eiw~l~~~~~~lvt~~~ds 211 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ--------HCFE--THVDHRGEIWALVLDEKLLVTAGTDS 211 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc--------eeee--EEecccceEEEEEEecceEEEEecCC
Confidence 8899999999999999998999999999999999999994 5565 88899999999999999999999999
Q ss_pred cEEEEcCC---Cc----------eeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCC---------CCcc
Q 001391 329 TCRVWGSD---GK----------QLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL---------PGSL 385 (1088)
Q Consensus 329 ~i~vWd~~---~~----------~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~---------~~~~ 385 (1088)
.+++|++. .+ ...++ +...++ .-.++..++++++++-+.|..+.++.+.... ++..
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R-~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~ 290 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR-EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRA 290 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeeccCCc-eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHh
Confidence 99999981 11 11122 223343 4466677888899999999999999884310 0000
Q ss_pred cCCcc------cc---------------------cc----------------CCCcceEEeee--CCCc----cceeecc
Q 001391 386 ESHPE------AK---------------------EF----------------NGRTEIFSIKI--PNFS----EQIRLTD 416 (1088)
Q Consensus 386 ~~~~~------~~---------------------~~----------------~~~~~~~~~~~--~~~~----~~~~~~~ 416 (1088)
+.+.. .+ .+ ++..+.+.+.. ++.+ .......
T Consensus 291 Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~ 370 (888)
T KOG0306|consen 291 KKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIG 370 (888)
T ss_pred hhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeec
Confidence 00000 00 00 01112222211 0000 1113345
Q ss_pred CCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCE
Q 001391 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNM 496 (1088)
Q Consensus 417 ~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I 496 (1088)
+|...|++++++.+..++++...+.+. +|+..+.++ +.....+ -+.+..+ .|.++.+++|...|.+
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~Sik---iWn~~t~kc--iRTi~~~-y~l~~~F--------vpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIK---IWNRDTLKC--IRTITCG-YILASKF--------VPGDRYIVLGTKNGEL 436 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEE---EEEccCcce--eEEeccc-cEEEEEe--------cCCCceEEEeccCCce
Confidence 778889999999998888888888887 555554443 2222222 3444444 4567999999999999
Q ss_pred EEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeec
Q 001391 497 TIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFS 576 (1088)
Q Consensus 497 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~ 576 (1088)
.+|++....+..... .+.+.++. ...+||++.+++|+.|.+|++|+........ ....-.+.+...-+
T Consensus 437 ~vfdlaS~~l~Eti~-------AHdgaIWs--i~~~pD~~g~vT~saDktVkfWdf~l~~~~~---gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 437 QVFDLASASLVETIR-------AHDGAIWS--ISLSPDNKGFVTGSADKTVKFWDFKLVVSVP---GTQKKVLSLKHTRT 504 (888)
T ss_pred EEEEeehhhhhhhhh-------ccccceee--eeecCCCCceEEecCCcEEEEEeEEEEeccC---cccceeeeeccceE
Confidence 999998876543221 34444544 3578999999999999999999987332100 00111123322222
Q ss_pred cccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEE
Q 001391 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656 (1088)
Q Consensus 577 ~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~ 656 (1088)
......|.|+.+||||++||+|--|.+|+||-+++-.+ .-.+.||. -+|.++.++ +|+..++
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-------------flsLYGHk--LPV~smDIS---~DSkliv 566 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-------------FLSLYGHK--LPVLSMDIS---PDSKLIV 566 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-------------eeeecccc--cceeEEecc---CCcCeEE
Confidence 34567899999999999999999999999999986432 22344565 689999999 7889999
Q ss_pred EecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEeeCCcC
Q 001391 657 STGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWR 736 (1088)
Q Consensus 657 t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~ 736 (1088)
|+|.|..|++|-++.+.. |
T Consensus 567 TgSADKnVKiWGLdFGDC-------------------------------------------------------------H 585 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDC-------------------------------------------------------------H 585 (888)
T ss_pred eccCCCceEEeccccchh-------------------------------------------------------------h
Confidence 999999999999877521 1
Q ss_pred cccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccCCCceEE
Q 001391 737 RPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWI 816 (1088)
Q Consensus 737 r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i 816 (1088)
++ .-+|...|.+|.|.|. .+++
T Consensus 586 KS-------------------------------------------~fAHdDSvm~V~F~P~---------------~~~F 607 (888)
T KOG0306|consen 586 KS-------------------------------------------FFAHDDSVMSVQFLPK---------------THLF 607 (888)
T ss_pred hh-------------------------------------------hhcccCceeEEEEccc---------------ceeE
Confidence 10 0178999999999976 6899
Q ss_pred EeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEEEEEecc
Q 001391 817 ATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGA 896 (1088)
Q Consensus 817 ~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~ 896 (1088)
.|+|-|+.||-|+-.. +..+.+|.+|. +-|++++. .+++.+++|++.
T Consensus 608 Ft~gKD~kvKqWDg~k----Fe~iq~L~~H~--~ev~cLav---------------------------~~~G~~vvs~sh 654 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEK----FEEIQKLDGHH--SEVWCLAV---------------------------SPNGSFVVSSSH 654 (888)
T ss_pred EEecCcceEEeechhh----hhhheeeccch--heeeeeEE---------------------------cCCCCeEEeccC
Confidence 9999999999998654 66799999999 99999987 345778999999
Q ss_pred eeEEEEEEEEe
Q 001391 897 KRVLTSWLLRH 907 (1088)
Q Consensus 897 d~~i~~W~~~~ 907 (1088)
|.+|++|.-..
T Consensus 655 D~sIRlwE~td 665 (888)
T KOG0306|consen 655 DKSIRLWERTD 665 (888)
T ss_pred CceeEeeeccC
Confidence 99999997644
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=361.93 Aligned_cols=522 Identities=15% Similarity=0.188 Sum_probs=372.2
Q ss_pred CceEEecCCCc---------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 5 DLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 5 ~i~iWdl~~g~---------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.|-+||+++|+ ...+|+|+.-+ |+ ..+||+|+ ||.|+||+..++..+-+|.+|.. .|..+.|.
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~--~d----~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~-AVt~l~fd 116 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSS--DD----ILLLAVGYADGSVQIFSLESEEILITFNGHKA-AVTTLKFD 116 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeecc--CC----cceEEEEecCceEEeeccCCCceeeeeccccc-ceEEEEEc
Confidence 47899999993 23589999999 88 78889999 89999999999999999999877 79999999
Q ss_pred ccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
..| .++++++ |+.|.+||+-.+ .-...+.||.+.|+..-|.. +.+.|++.
T Consensus 117 -------~~G----~rlaSGskDt~IIvwDlV~E---------------~Gl~rL~GHkd~iT~~~F~~---~~~~lvS~ 167 (888)
T KOG0306|consen 117 -------KIG----TRLASGSKDTDIIVWDLVGE---------------EGLFRLRGHKDSITQALFLN---GDSFLVSV 167 (888)
T ss_pred -------ccC----ceEeecCCCccEEEEEeccc---------------eeeEEeecchHHHhHHhccC---CCeEEEEe
Confidence 677 6777766 999999999743 34567889999999999987 78899999
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
+.|+.|++||+++..+..+.-.+ +..+|++++. +..+++++.|+.+++|++..+......
T Consensus 168 sKDs~iK~WdL~tqhCf~Thvd~-r~Eiw~l~~~-----~~~lvt~~~dse~~v~~L~~~~D~~~~-------------- 227 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQHCFETHVDH-RGEIWALVLD-----EKLLVTAGTDSELKVWELAFEDDEKET-------------- 227 (888)
T ss_pred ccCceEEEEecccceeeeEEecc-cceEEEEEEe-----cceEEEEecCCceEEEEeecccccccc--------------
Confidence 99999999999999888776544 4468888773 378899999999999999521111000
Q ss_pred CceeEecccccceeee-EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc-------------CCC-----
Q 001391 234 FKCFKLQDQQHTAVNL-FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-------------DSD----- 294 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~-~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~-------------~~~----- 294 (1088)
+..+ ..+.. ...+...+....++..+++++++.-+.|..+.++.+.+.... ...
T Consensus 228 ~~~~-------s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 228 NRYI-------STKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred cccc-------eeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 0000 01111 112334555667777888899999999999999998764321 000
Q ss_pred -Cce-----eeeceeeeccCcceEEEEEC-----CCEEEEEeCCCcEEEEcCC--Cce--------eEEEcccCCCCeEE
Q 001391 295 -SIE-----EVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGSD--GKQ--------LKMIKEHIGRGIWR 353 (1088)
Q Consensus 295 -~~~-----~i~~~~~~~h~~~I~~v~~~-----~~~l~sg~~Dg~i~vWd~~--~~~--------~~~~~~h~~~~V~~ 353 (1088)
+.. .+..+...--...|.++.+. ...+++ -.+.++..+.++ ++. --.+.+|.. -|.+
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRs 378 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRS 378 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchh-heeE
Confidence 000 00000111123456666664 224444 667888888873 221 134678988 4999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcC-CCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-
Q 001391 354 CLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED- 431 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~- 431 (1088)
++++.+...+++|+ .+.+++|+.. .+++++++. +++.+..|.|.+
T Consensus 379 l~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--------------------------------~y~l~~~Fvpgd~ 425 (888)
T KOG0306|consen 379 LCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--------------------------------GYILASKFVPGDR 425 (888)
T ss_pred EEeecCceeeeecC-CCcEEEEEccCcceeEEecc--------------------------------ccEEEEEecCCCc
Confidence 99999887666654 5689999995 455544331 357788888865
Q ss_pred eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC-----c
Q 001391 432 TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV-----H 506 (1088)
Q Consensus 432 ~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~-----~ 506 (1088)
.+++++.+|.+..+++....... ..+ .++..|+.++..++ +..+++|+.|.+|++|++.--. .
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~E---ti~-AHdgaIWsi~~~pD--------~~g~vT~saDktVkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVE---TIR-AHDGAIWSISLSPD--------NKGFVTGSADKTVKFWDFKLVVSVPGTQ 493 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhh---hhh-ccccceeeeeecCC--------CCceEEecCCcEEEEEeEEEEeccCccc
Confidence 66777899999887776654432 223 44678999988554 5889999999999999985211 1
Q ss_pred CcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEE
Q 001391 507 TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (1088)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l 586 (1088)
.....+...-...-+..++. ..+||||++|+++--|.++++|-+++-+ +--. .-+|..+|.||
T Consensus 494 ~k~lsl~~~rtLel~ddvL~--v~~Spdgk~LaVsLLdnTVkVyflDtlK--------------Ffls-LYGHkLPV~sm 556 (888)
T KOG0306|consen 494 KKVLSLKHTRTLELEDDVLC--VSVSPDGKLLAVSLLDNTVKVYFLDTLK--------------FFLS-LYGHKLPVLSM 556 (888)
T ss_pred ceeeeeccceEEeccccEEE--EEEcCCCcEEEEEeccCeEEEEEeccee--------------eeee-ecccccceeEE
Confidence 11111211111122222333 3579999999999999999999988432 1111 12899999999
Q ss_pred EeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEE
Q 001391 587 DASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICY 666 (1088)
Q Consensus 587 ~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~i 666 (1088)
++|||+++|+|||.|.+|+||-++-+. ....+.+|. +.|++|.|. +....+.|+|.||.++.
T Consensus 557 DIS~DSklivTgSADKnVKiWGLdFGD-------------CHKS~fAHd--DSvm~V~F~---P~~~~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKNVKIWGLDFGD-------------CHKSFFAHD--DSVMSVQFL---PKTHLFFTCGKDGKVKQ 618 (888)
T ss_pred eccCCcCeEEeccCCCceEEeccccch-------------hhhhhhccc--CceeEEEEc---ccceeEEEecCcceEEe
Confidence 999999999999999999999887431 123444444 799999999 56688999999999999
Q ss_pred EEeec
Q 001391 667 LEYDK 671 (1088)
Q Consensus 667 w~~~~ 671 (1088)
||-+.
T Consensus 619 WDg~k 623 (888)
T KOG0306|consen 619 WDGEK 623 (888)
T ss_pred echhh
Confidence 98543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=340.81 Aligned_cols=535 Identities=14% Similarity=0.176 Sum_probs=387.7
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC--------cEEE
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN--------SIRV 161 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg--------~V~i 161 (1088)
-++.+-..-+.+++++. ...+.+.+|++.|.|++++| +.-.+++|..-| .+++
T Consensus 78 E~vyfvA~V~Vl~n~ee----------------~~Qr~y~GH~ddikc~~vHP---dri~vatGQ~ag~~g~~~~phvri 138 (626)
T KOG2106|consen 78 ELVYFVAAVGVLYNWEE----------------RSQRHYLGHNDDIKCMAVHP---DRIRVATGQGAGTSGRPLQPHVRI 138 (626)
T ss_pred cEEEEeccEEEEEeehh----------------hhcccccCCCCceEEEeecC---CceeeccCcccccCCCcCCCeeee
Confidence 45555567778888863 33567789999999999999 888899875544 5999
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE--EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s--g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
||..+...+..+..-+. .+.+++|.+. ..|.+++. -+.+..+.|||++
T Consensus 139 Wdsv~L~TL~V~g~f~~-GV~~vaFsk~-~~G~~l~~vD~s~~h~lSVWdWq---------------------------- 188 (626)
T KOG2106|consen 139 WDSVTLSTLHVIGFFDR-GVTCVAFSKI-NGGSLLCAVDDSNPHMLSVWDWQ---------------------------- 188 (626)
T ss_pred cccccceeeeeeccccc-cceeeeeccc-CCCceEEEecCCCccccchhhch----------------------------
Confidence 99877766655542222 2334444332 34555544 3456788999998
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-CcceEEEEEC-
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT- 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-~~~I~~v~~~- 317 (1088)
.+......+..+..|....|+|.+..++.....+.+.+|+.+.+.. .+... .+.++ ...|.|++|.
T Consensus 189 -----k~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-----~k~~~--~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 189 -----KKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-----VKRQG--IFEKREKKFVLCVTFLE 256 (626)
T ss_pred -----hhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-----EEEee--ccccccceEEEEEEEcC
Confidence 5556666667778899999999887776666778999999988754 33333 23332 2679999999
Q ss_pred CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCC
Q 001391 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG 396 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1088)
+.-+++|..+|.|.||+. ..+..++...|.+ +|.+++...+|.+|- |+.|+.|..||-.-+.++.
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~------------ 322 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDG-GVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRE------------ 322 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEeeecCC-ceEEEEEecCccEee-cCccceEEecccccccccc------------
Confidence 678999999999999999 4455555668988 799999999997555 9999999999942221111
Q ss_pred CcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCC
Q 001391 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (1088)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 476 (1088)
+..|+ ..+.||.++-...+ ++++|..+.|+...+.+.- ..+.++| ..+.+.++.+++.
T Consensus 323 ------~elPe----------~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f----~~~v~gh-~delwgla~hps~ 380 (626)
T KOG2106|consen 323 ------TELPE----------QFGPIRTVAEGKGD-ILVGTTRNFILQGTLENGF----TLTVQGH-GDELWGLATHPSK 380 (626)
T ss_pred ------ccCch----------hcCCeeEEecCCCc-EEEeeccceEEEeeecCCc----eEEEEec-ccceeeEEcCCCh
Confidence 11122 23567777765544 9999999999877765543 3556676 4589999887654
Q ss_pred CCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCC
Q 001391 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (1088)
Q Consensus 477 ~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~ 556 (1088)
+.+++++.|+.+++|+ .. .+ .+..... .... ...|.|.| .++.|...|...+.|.+...
T Consensus 381 --------~q~~T~gqdk~v~lW~--~~--k~--~wt~~~~----d~~~--~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 381 --------NQLLTCGQDKHVRLWN--DH--KL--EWTKIIE----DPAE--CADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred --------hheeeccCcceEEEcc--CC--ce--eEEEEec----Ccee--EeeccCcc-eEEEeeccceEEEEecccce
Confidence 8999999999999998 21 22 2221111 1111 14578888 99999999999999998532
Q ss_pred CcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccccc
Q 001391 557 SSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG 636 (1088)
Q Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg 636 (1088)
++..-+ . ..++++++|+|+|.+||.|+.|+.|+||.++.+.+ ++.... .+||
T Consensus 440 --------------lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~---------~y~r~~---k~~g 491 (626)
T KOG2106|consen 440 --------------LVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR---------KYSRVG---KCSG 491 (626)
T ss_pred --------------eEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc---------EEEEee---eecC
Confidence 122211 2 78899999999999999999999999999997644 443343 3566
Q ss_pred ccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccE
Q 001391 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDF 716 (1088)
Q Consensus 637 ~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~ 716 (1088)
+.||+++|+ .|+.+|.+.+.|..|.+|. .+ ++..... +..+.|. ...+.+||.
T Consensus 492 -s~ithLDwS---~Ds~~~~~~S~d~eiLyW~--~~----~~~~~ts------~kDvkW~-------t~~c~lGF~---- 544 (626)
T KOG2106|consen 492 -SPITHLDWS---SDSQFLVSNSGDYEILYWK--PS----ECKQITS------VKDVKWA-------TYTCTLGFE---- 544 (626)
T ss_pred -ceeEEeeec---CCCceEEeccCceEEEEEc--cc----cCcccce------ecceeee-------eeEEEEEEE----
Confidence 799999999 7889999999999999993 22 1111111 2222121 233666661
Q ss_pred EEEeCCcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEec
Q 001391 717 IIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVS 796 (1088)
Q Consensus 717 ~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~ 796 (1088)
...+.|+..|++++++.
T Consensus 545 ---------------------------------------------------------------v~g~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 545 ---------------------------------------------------------------VFGGSDGTDINAVARSH 561 (626)
T ss_pred ---------------------------------------------------------------EecccCCchHHHhhhhh
Confidence 01157899999999986
Q ss_pred cccccccccccccCCCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCcccccc
Q 001391 797 ENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEIN 876 (1088)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~ 876 (1088)
. .+++|+|.|.|+|||++||+... ...+..+.+|+ +.|++++|+++
T Consensus 562 ~---------------~~~lA~gdd~g~v~lf~yPc~s~-rA~~he~~ghs--~~vt~V~Fl~~---------------- 607 (626)
T KOG2106|consen 562 C---------------EKLLASGDDFGKVHLFSYPCSSP-RAPSHEYGGHS--SHVTNVAFLCK---------------- 607 (626)
T ss_pred h---------------hhhhhccccCceEEEEccccCCC-cccceeecccc--ceeEEEEEeeC----------------
Confidence 5 68999999999999999998665 67899999999 99999999844
Q ss_pred ccCccccCCCCcEEEEEecceeEEEEEEE
Q 001391 877 RQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1088)
Q Consensus 877 ~~~~~~~~~~~~~ll~s~g~d~~i~~W~~ 905 (1088)
+..++.|+ .|.+|+.|++
T Consensus 608 ----------d~~li~tg-~D~Si~qW~l 625 (626)
T KOG2106|consen 608 ----------DSHLISTG-KDTSIMQWRL 625 (626)
T ss_pred ----------CceEEecC-CCceEEEEEe
Confidence 45666666 9999999987
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=328.51 Aligned_cols=564 Identities=12% Similarity=0.147 Sum_probs=411.3
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~ 113 (1088)
+.-++-+.+..|.+-++........+..|.. .+.-..+| |.| .++|+++ .|+||||+....+
T Consensus 30 gd~ilY~nGksv~ir~i~~~~~~~iYtEH~~-~vtVAkyS-------PsG----~yiASGD~sG~vRIWdtt~~~----- 92 (603)
T KOG0318|consen 30 GDNILYTNGKSVIIRNIDNPASVDIYTEHAH-QVTVAKYS-------PSG----FYIASGDVSGKVRIWDTTQKE----- 92 (603)
T ss_pred CCeEEEeCCCEEEEEECCCccceeeeccccc-eeEEEEeC-------CCc----eEEeecCCcCcEEEEeccCcc-----
Confidence 6667777778899999999888888888644 78999999 777 7777776 6999999988543
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE--cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL 191 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~ 191 (1088)
.-+-..++...++|.+++|++ |+++|+..+ .++..+++-.++|..+.++.+|.+. +.++.+-+ .
T Consensus 93 --------hiLKnef~v~aG~I~Di~Wd~---ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~-ins~~~Kp--s 158 (603)
T KOG0318|consen 93 --------HILKNEFQVLAGPIKDISWDF---DSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRR-INSVDFKP--S 158 (603)
T ss_pred --------eeeeeeeeecccccccceeCC---CCcEEEEEecCccceeEEEEecCCCccceeecccee-EeeeeccC--C
Confidence 223344556679999999999 888776654 3445555555677778888877664 55666532 2
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
..-.+++|+.|++|.+|+-. ..+.-..+..|..-|.++.|+|||.++
T Consensus 159 RPfRi~T~sdDn~v~ffeGP---------------------------------PFKFk~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGP---------------------------------PFKFKSSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred CceEEEeccCCCeEEEeeCC---------------------------------CeeeeecccccccceeeEEECCCCCeE
Confidence 34689999999999999865 455566778899999999999999999
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
+|++.||.+.+||-.++.. ...+. .-.+|.+.|.++.|+ ...++|++.|.+++|||+ +.++++++.....
T Consensus 206 at~gsDgki~iyDGktge~-----vg~l~--~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEK-----VGELE--DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred EEecCCccEEEEcCCCccE-----EEEec--CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 9999999999999888643 22222 244899999999999 479999999999999999 7788887754332
Q ss_pred --CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 349 --RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 349 --~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
+.--.+.|- ...|++.+.+|+|.+++.... .......+|...|++++
T Consensus 279 v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-----------------------------~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 279 VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-----------------------------SVLKVISGHNKSITALT 327 (603)
T ss_pred hhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-----------------------------ChhheecccccceeEEE
Confidence 123344454 457999999999999988421 02334456778899999
Q ss_pred eccCC-eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 427 LTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 427 ~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
.++++ .++.+..+|.|..|+...... .++....+...|.+++.... ..+.+.+.|.++++.++....
T Consensus 328 v~~d~~~i~SgsyDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~~---------~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 328 VSPDGKTIYSGSYDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASES---------GELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred EcCCCCEEEeeccCceEEEEecCCccc---cccccccccceEEEEeecCC---------CcEEEEecCCeEEEEecccCc
Confidence 99988 566677899998766544332 23433445778888887543 467888889999999886554
Q ss_pred cCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEE
Q 001391 506 HTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~ 585 (1088)
.......+ ...+ ..+ .+...++.+++.+..++.+.+=+..... +.+- .-...+
T Consensus 396 ~t~~~~~~--lg~Q----P~~--lav~~d~~~avv~~~~~iv~l~~~~~~~-------------~~~~------~y~~s~ 448 (603)
T KOG0318|consen 396 YTKSEVVK--LGSQ----PKG--LAVLSDGGTAVVACISDIVLLQDQTKVS-------------SIPI------GYESSA 448 (603)
T ss_pred ccccceee--cCCC----cee--EEEcCCCCEEEEEecCcEEEEecCCcce-------------eecc------ccccce
Confidence 43221111 1111 222 4556666666666555544444343211 1111 233679
Q ss_pred EEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEE
Q 001391 586 LDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCIC 665 (1088)
Q Consensus 586 l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~ 665 (1088)
++++|+++.+|+|.+||.|+||.+....+ .....+..|. ..||.|+++ +++.||+++-.-+.+.
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-----------~ee~~~~~h~--a~iT~vayS---pd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDEL-----------KEEAKLLEHR--AAITDVAYS---PDGAYLAAGDASRKVV 512 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcc-----------cceeeeeccc--CCceEEEEC---CCCcEEEEeccCCcEE
Confidence 99999999999999999999999986432 1222333355 489999999 7889999999889999
Q ss_pred EEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEeeCCcCcccccccCC
Q 001391 666 YLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGD 745 (1088)
Q Consensus 666 iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~ 745 (1088)
+|++..... +
T Consensus 513 ~yd~~s~~~----------~------------------------------------------------------------ 522 (603)
T KOG0318|consen 513 LYDVASREV----------K------------------------------------------------------------ 522 (603)
T ss_pred EEEcccCce----------e------------------------------------------------------------
Confidence 998754310 0
Q ss_pred cCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccCCCceEEEeccCCceE
Q 001391 746 VPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTV 825 (1088)
Q Consensus 746 ~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tI 825 (1088)
..+..+|...|+||+.+|+ ..++||||-|++|
T Consensus 523 ---------------------------------~~~w~FHtakI~~~aWsP~---------------n~~vATGSlDt~V 554 (603)
T KOG0318|consen 523 ---------------------------------TNRWAFHTAKINCVAWSPN---------------NKLVATGSLDTNV 554 (603)
T ss_pred ---------------------------------cceeeeeeeeEEEEEeCCC---------------ceEEEeccccceE
Confidence 0112378999999999976 6899999999999
Q ss_pred EEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEEEEEecceeEEEEEEE
Q 001391 826 RLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1088)
Q Consensus 826 rl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~ 905 (1088)
-||.+..- .......++|. ..|+.+.|+ ++--|+|.|.|..||+|.+
T Consensus 555 iiysv~kP---~~~i~iknAH~--~gVn~v~wl----------------------------de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 555 IIYSVKKP---AKHIIIKNAHL--GGVNSVAWL----------------------------DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEEEccCh---hhheEeccccc--cCceeEEEe----------------------------cCceEEeccCcceeEEecc
Confidence 99999642 33488899999 449999997 3456999999999999987
Q ss_pred E
Q 001391 906 R 906 (1088)
Q Consensus 906 ~ 906 (1088)
.
T Consensus 602 ~ 602 (603)
T KOG0318|consen 602 T 602 (603)
T ss_pred c
Confidence 4
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=336.21 Aligned_cols=556 Identities=14% Similarity=0.172 Sum_probs=403.1
Q ss_pred CCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecc
Q 001391 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (1088)
Q Consensus 4 ~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~ 75 (1088)
+.|.++|+...+ ...-|++++.| |+ |.+|++.. .|...+-+......++.|.- +. +|.+|+||
T Consensus 35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialS--p~----g~lllavdE~g~~~lvs~~~r~Vlh~f~f-k~-~v~~i~fS- 105 (893)
T KOG0291|consen 35 NRVSVFDLKNNKSYTLPLETRYNITRIALS--PD----GTLLLAVDERGRALLVSLLSRSVLHRFNF-KR-GVGAIKFS- 105 (893)
T ss_pred CEEEEEEccCCcceeEEeecCCceEEEEeC--CC----ceEEEEEcCCCcEEEEecccceeeEEEee-cC-ccceEEEC-
Confidence 568999999876 34569999999 99 88888877 58888888888888888874 44 69999999
Q ss_pred cccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc
Q 001391 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1088)
Q Consensus 76 ~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~ 155 (1088)
|+| .++|++-.+-+.||...... ...|.| +.+.+++.+|-+.|.++.|+. |.++|++|+.
T Consensus 106 ------Png----~~fav~~gn~lqiw~~P~~~--~~~~~p-----Fvl~r~~~g~fddi~si~Ws~---DSr~l~~gsr 165 (893)
T KOG0291|consen 106 ------PNG----KFFAVGCGNLLQIWHAPGEI--KNEFNP-----FVLHRTYLGHFDDITSIDWSD---DSRLLVTGSR 165 (893)
T ss_pred ------CCC----cEEEEEecceeEEEecCcch--hcccCc-----ceEeeeecCCccceeEEEecc---CCceEEeccc
Confidence 888 78999999999999976433 224555 888999999999999999999 9999999999
Q ss_pred CCcEEEEEcCCCce--EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC-CCCCccCCCCCC
Q 001391 156 DNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSS 232 (1088)
Q Consensus 156 Dg~V~iWd~~~~~~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~-~~~~~s~~~~~~ 232 (1088)
|-++++|+++..+. ...+.+|...++ .+.| ..+...+++-+.||.+.+|.+.......... .....+.+....
T Consensus 166 D~s~rl~~v~~~k~~~~~~l~gHkd~Vv-acfF---~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 DLSARLFGVDGNKNLFTYALNGHKDYVV-ACFF---GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred cceEEEEEeccccccceEeccCCCcceE-EEEe---ccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 99999999987665 344445554433 3333 4567789999999999999987321111000 000000000000
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
.++.=+.-..........-+......|++.+|++.-..|+++-..|...+|.+.. ...+. .+.--..+|.
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~--------f~lih--~LSis~~~I~ 311 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD--------FNLIH--SLSISDQKIL 311 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC--------ceEEE--Eeecccceee
Confidence 0000000000000111222333447899999999999999999999999999988 34554 4444557899
Q ss_pred EEEEC--CCEEEEEeCC-CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccC
Q 001391 313 DCCLT--DSFIITAGED-CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLES 387 (1088)
Q Consensus 313 ~v~~~--~~~l~sg~~D-g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~ 387 (1088)
.+.|+ |+.|+.|+.. |.+.||+. ...-+-+.++|.. .+.+++++|||++++||+.||.|++||... -+..+
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT--- 387 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT--- 387 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE---
Confidence 99998 8999988866 89999998 5566777889988 599999999999999999999999999843 33333
Q ss_pred CccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEecCCeEEEEEeccCCcceeEEeeeecCCcc
Q 001391 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMP 466 (1088)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1088)
+..|...|+.+.|+..++ ++.++-+|.+..|++-...+ -+.+..+...+
T Consensus 388 ---------------------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~Q 437 (893)
T KOG0291|consen 388 ---------------------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQ 437 (893)
T ss_pred ---------------------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCcee
Confidence 334557799999998774 55667899988665544433 34556777788
Q ss_pred eEEEecCCCCCCCcCCCCCeEEEecCCC-CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCC
Q 001391 467 IICMDLLSNEPKYPCGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKG 545 (1088)
Q Consensus 467 i~~l~~~~~~~~~s~~~~~~la~g~~dg-~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg 545 (1088)
..|+++.+++ .++..|+.|. .|.+|++.++++... ..+|++.+.+ .+++|++..|++++.|.
T Consensus 438 fscvavD~sG--------elV~AG~~d~F~IfvWS~qTGqllDi-------LsGHEgPVs~--l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 438 FSCVAVDPSG--------ELVCAGAQDSFEIFVWSVQTGQLLDI-------LSGHEGPVSG--LSFSPDGSLLASGSWDK 500 (893)
T ss_pred eeEEEEcCCC--------CEEEeeccceEEEEEEEeecCeeeeh-------hcCCCCccee--eEEccccCeEEeccccc
Confidence 8899887765 7888888877 899999999886542 2234443433 46999999999999999
Q ss_pred eEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCccccccccccccccc
Q 001391 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEV 625 (1088)
Q Consensus 546 ~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l 625 (1088)
+|++|++-..... ..++ .+...++.++|.|||+-||++.-||.|.+||....... .+-.....+
T Consensus 501 TVRiW~if~s~~~-------------vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~-~~IdgrkD~ 564 (893)
T KOG0291|consen 501 TVRIWDIFSSSGT-------------VETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV-GSIDGRKDL 564 (893)
T ss_pred eEEEEEeeccCce-------------eeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee-ccccchhhc
Confidence 9999998744211 1122 34556999999999999999999999999998864321 001111122
Q ss_pred Ccce----eec---ccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCC
Q 001391 626 SPLN----YFK---GAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (1088)
Q Consensus 626 ~~~~----~~~---g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~ 673 (1088)
.+.. .+. ...+ .+.|.|+++ .|+..|+++|....||+|+++...
T Consensus 565 ~~gR~~~D~~ta~~sa~~-K~Ftti~yS---aDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 565 SGGRKETDRITAENSAKG-KTFTTICYS---ADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cccccccceeehhhcccC-CceEEEEEc---CCCCEEEecCCcccEEEEECchhh
Confidence 2221 111 1233 579999999 788999999999999999998753
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=333.73 Aligned_cols=319 Identities=19% Similarity=0.292 Sum_probs=274.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|.|++|+ |+ ++.|++|+ |.++|+||+.+..++++.++|.. -|.+++|+ ||| ..||++
T Consensus 114 H~e~Vl~~~fs--p~----g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~-WVlcvaws-------PDg----k~iASG 175 (480)
T KOG0271|consen 114 HGEAVLSVQFS--PT----GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN-WVLCVAWS-------PDG----KKIASG 175 (480)
T ss_pred CCCcEEEEEec--CC----CceEEecCCCceEEeeccCCCCcceeecCCcc-EEEEEEEC-------CCc----chhhcc
Confidence 67899999999 99 99999999 69999999999999999999776 79999999 898 566665
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc--CCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~--~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
. |++|++||.+++. +..+.|.+|..+|++++|.|.. +..++||+++.||+|+|||+..+.++.
T Consensus 176 ~~dg~I~lwdpktg~--------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQ--------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred ccCCeEEEecCCCCC--------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE
Confidence 5 9999999988754 5667889999999999998742 456799999999999999999999999
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
.+.+|... +.++++ ....++++|+.|++|++|+.. .+.....
T Consensus 242 ~lsgHT~~-VTCvrw----GG~gliySgS~DrtIkvw~a~---------------------------------dG~~~r~ 283 (480)
T KOG0271|consen 242 TLSGHTAS-VTCVRW----GGEGLIYSGSQDRTIKVWRAL---------------------------------DGKLCRE 283 (480)
T ss_pred EeccCccc-eEEEEE----cCCceEEecCCCceEEEEEcc---------------------------------chhHHHh
Confidence 99888754 455554 234599999999999999998 7888899
Q ss_pred EeCCCCCEEEEEEc-----------CCC-------------------------CEEEEEECCCcEEEEEcCCCcccCCCC
Q 001391 252 LVGHEGSIFRIEWS-----------SCG-------------------------SKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1088)
Q Consensus 252 ~~gh~~~V~~v~~s-----------p~g-------------------------~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 295 (1088)
++||..+|+.++.+ |.+ ..+++|++|.++.+|+....+
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k------ 357 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK------ 357 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc------
Confidence 99999999999876 323 359999999999999987642
Q ss_pred ceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
+++. .+.||..-|..+.|+ +.+|++++.|..|++|+. +|+.+.+|++|-+ +|+.++|+.|.++|++|+.|.++
T Consensus 358 -kpi~--rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 358 -KPIT--RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-AVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred -cchh--hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-eeEEEEeccCccEEEEcCCCceE
Confidence 3554 789999999999999 579999999999999999 9999999999999 79999999999999999999999
Q ss_pred EEEEcCCCC-CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEE
Q 001391 373 KVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (1088)
Q Consensus 373 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~ 444 (1088)
++|+++++. .+.+ .+|.+.|.++.|+|||..++++....++.
T Consensus 434 Kvw~V~tkKl~~DL------------------------------pGh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 434 KVWDVRTKKLKQDL------------------------------PGHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEeeeeeecccC------------------------------CCCCceEEEEEecCCCceeecCCCceEEE
Confidence 999996532 2222 34556789999999999999987777653
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=323.48 Aligned_cols=330 Identities=18% Similarity=0.271 Sum_probs=270.0
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
++-..+.+|.+ .|.+++|+ |+|+ .++..+||.++|+||+.++ .+..+.++|..|
T Consensus 106 rCssS~~GH~e-~Vl~~~fs-------p~g~---~l~tGsGD~TvR~WD~~Te---------------Tp~~t~KgH~~W 159 (480)
T KOG0271|consen 106 RCSSSIAGHGE-AVLSVQFS-------PTGS---RLVTGSGDTTVRLWDLDTE---------------TPLFTCKGHKNW 159 (480)
T ss_pred eeccccCCCCC-cEEEEEec-------CCCc---eEEecCCCceEEeeccCCC---------------CcceeecCCccE
Confidence 34456667666 79999999 8873 5555567999999999964 567888999999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeec--CCCCCcEEEEEecCCeEEEEEecc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG--DNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~--~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
|.|++|+| ||+.||+|+.||+|++||..+++++..-...+...+.++++.+ ..|...+||+++.||.|+|||..
T Consensus 160 VlcvawsP---Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~- 235 (480)
T KOG0271|consen 160 VLCVAWSP---DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK- 235 (480)
T ss_pred EEEEEECC---CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-
Confidence 99999999 9999999999999999999999887654444455566776643 24567799999999999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
.+..+..+.||+.+|+|+.|--+ .+++|+|.|++|++|+...+.+
T Consensus 236 --------------------------------~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~-- 280 (480)
T KOG0271|consen 236 --------------------------------LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL-- 280 (480)
T ss_pred --------------------------------CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH--
Confidence 78889999999999999999654 4899999999999999988643
Q ss_pred CCCceeeeceeeeccCcceEEEEEC-------------CC-------------------------EEEEEeCCCcEEEEc
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT-------------DS-------------------------FIITAGEDCTCRVWG 334 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~-------------~~-------------------------~l~sg~~Dg~i~vWd 334 (1088)
.. .+.||...|..++.+ +. .+++|+.|.++.+|+
T Consensus 281 ------~r--~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~ 352 (480)
T KOG0271|consen 281 ------CR--ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWN 352 (480)
T ss_pred ------HH--hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEec
Confidence 32 788999999888765 22 499999999999999
Q ss_pred C--CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccc
Q 001391 335 S--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1088)
Q Consensus 335 ~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1088)
. ..+++..+.+|.. -|..+.|+||++++|+++.|.+|++|+- .++.+.++++|.
T Consensus 353 p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv---------------------- 409 (480)
T KOG0271|consen 353 PFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV---------------------- 409 (480)
T ss_pred ccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc----------------------
Confidence 8 6678899999998 6999999999999999999999999998 556677777666
Q ss_pred eeeccCCCCceEEEEeccCCeEEEEecCCe-EEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEe
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGY-LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~-i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1088)
..|..++|+.|.+++++++... +. +|+..+.+...=+.+ +..+++++++.++ +..+++|
T Consensus 410 --------~~VYqvawsaDsRLlVS~SkDsTLK---vw~V~tkKl~~DLpG-h~DEVf~vDwspD--------G~rV~sg 469 (480)
T KOG0271|consen 410 --------AAVYQVAWSADSRLLVSGSKDSTLK---VWDVRTKKLKQDLPG-HADEVFAVDWSPD--------GQRVASG 469 (480)
T ss_pred --------ceeEEEEeccCccEEEEcCCCceEE---EEEeeeeeecccCCC-CCceEEEEEecCC--------CceeecC
Confidence 5689999999999888865554 55 444444332222233 4788999999654 5999999
Q ss_pred cCCCCEEEEE
Q 001391 491 DGKGNMTIVR 500 (1088)
Q Consensus 491 ~~dg~I~iw~ 500 (1088)
+.|..+++|.
T Consensus 470 gkdkv~~lw~ 479 (480)
T KOG0271|consen 470 GKDKVLRLWR 479 (480)
T ss_pred CCceEEEeec
Confidence 9999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=315.83 Aligned_cols=468 Identities=14% Similarity=0.205 Sum_probs=353.8
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC--------eeEEEEeeeCCcceEEEEecccccccCCCcccee
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG--------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg--------~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
-.+|.|++|| |+ |+++|+|.+..+.||..... .+.+++.+|.. .|.++.|+ .|.
T Consensus 96 k~~v~~i~fS--Pn----g~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fd-di~si~Ws-------~DS---- 157 (893)
T KOG0291|consen 96 KRGVGAIKFS--PN----GKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFD-DITSIDWS-------DDS---- 157 (893)
T ss_pred cCccceEEEC--CC----CcEEEEEecceeEEEecCcchhcccCcceEeeeecCCcc-ceeEEEec-------cCC----
Confidence 4679999999 99 99999999999999997643 23455666555 69999999 676
Q ss_pred eEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 89 FEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
+++++ +.|.+++||.++... .-....+.+|.+.|-.+-|.. +...++|-+.||.+.+|.....
T Consensus 158 r~l~~gsrD~s~rl~~v~~~k-------------~~~~~~l~gHkd~VvacfF~~---~~~~l~tvskdG~l~~W~~~~~ 221 (893)
T KOG0291|consen 158 RLLVTGSRDLSARLFGVDGNK-------------NLFTYALNGHKDYVVACFFGA---NSLDLYTVSKDGALFVWTCDLR 221 (893)
T ss_pred ceEEeccccceEEEEEecccc-------------ccceEeccCCCcceEEEEecc---CcceEEEEecCceEEEEEecCC
Confidence 56666 559999999998543 234567889999999999998 8888999999999999987611
Q ss_pred -----------------------ce-E-----EE----eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 168 -----------------------SI-I-----LE----VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 168 -----------------------~~-~-----~~----~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
+. . .. ........+.++++| +...+|++|-..|...++.+.
T Consensus 222 P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH---~~t~~lvvgFssG~f~LyelP--- 295 (893)
T KOG0291|consen 222 PPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH---KGTNLLVVGFSSGEFGLYELP--- 295 (893)
T ss_pred CcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc---CCceEEEEEecCCeeEEEecC---
Confidence 10 0 00 001111334445553 556789999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-CcEEEEEcCCCcccCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-RSARIWEVRAEYWKDS 293 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D-g~v~iWd~~~~~~~~~ 293 (1088)
....++.+.-....|..++|+..|.+++.++.. |.+-+|+....
T Consensus 296 ------------------------------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE----- 340 (893)
T KOG0291|consen 296 ------------------------------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE----- 340 (893)
T ss_pred ------------------------------CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-----
Confidence 677888888888999999999999999987654 89999999884
Q ss_pred CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 294 ~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
..+ ...++|..++.+++++ ++++++|++||.|+|||. .|-++.+|..|.. +|+.+.|+..|+.+++.+-||
T Consensus 341 ---sYV--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 341 ---SYV--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred ---cee--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecCC
Confidence 222 2678999999999999 579999999999999999 8899999999998 799999999999999999999
Q ss_pred CEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc
Q 001391 371 AIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1088)
Q Consensus 371 ~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~ 449 (1088)
+|+.||+.. ...+++.. |+. -...|++..|.|.+++++..... .+.+|+
T Consensus 415 tVRAwDlkRYrNfRTft~------------------P~p-----------~QfscvavD~sGelV~AG~~d~F-~IfvWS 464 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTS------------------PEP-----------IQFSCVAVDPSGELVCAGAQDSF-EIFVWS 464 (893)
T ss_pred eEEeeeecccceeeeecC------------------CCc-----------eeeeEEEEcCCCCEEEeeccceE-EEEEEE
Confidence 999999943 33333221 211 13578889888988887766552 333777
Q ss_pred CCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEE
Q 001391 450 MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYW 529 (1088)
Q Consensus 450 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
.++++...++.|| +.||.++.+.+.+ ..+++|+-|.+|++|++-..... ...+ ...+..+. .
T Consensus 465 ~qTGqllDiLsGH-EgPVs~l~f~~~~--------~~LaS~SWDkTVRiW~if~s~~~-vEtl------~i~sdvl~--v 526 (893)
T KOG0291|consen 465 VQTGQLLDILSGH-EGPVSGLSFSPDG--------SLLASGSWDKTVRIWDIFSSSGT-VETL------EIRSDVLA--V 526 (893)
T ss_pred eecCeeeehhcCC-CCcceeeEEcccc--------CeEEeccccceEEEEEeeccCce-eeeE------eeccceeE--E
Confidence 7777777788888 5789998886654 89999999999999998543211 0011 11111222 5
Q ss_pred eecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcc-cceee-eeeec---cccCceEEEEEeeeCCCEEEEEcCCCcE
Q 001391 530 CKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT-NNVFL-VAEFS---SCFGARIMCLDASFEDEVLFCGDLRGNL 604 (1088)
Q Consensus 530 ~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~l-~~~~~---~~h~~~It~l~~spdg~~LatGs~dg~I 604 (1088)
.++|+|+-|+++..||.|.+||+....+....+.... ...+. ...++ .......+.+++|+||..|+.|+....|
T Consensus 527 sfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred EEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 6899999999999999999999987654432211000 00000 00111 2345679999999999999999999999
Q ss_pred EEEeCCccc
Q 001391 605 VLFPLLRDL 613 (1088)
Q Consensus 605 ~Iw~~~~~~ 613 (1088)
+||++.++-
T Consensus 607 CiY~v~~~v 615 (893)
T KOG0291|consen 607 CIYDVPEGV 615 (893)
T ss_pred EEEECchhh
Confidence 999998753
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=320.44 Aligned_cols=278 Identities=22% Similarity=0.351 Sum_probs=252.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-E
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F 94 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~ 94 (1088)
..||..+.|| +| ++.|++|+ +|.++||+..++..+.+|.+|.. .|-++.|+|. .++ ..+|+ +
T Consensus 175 ~rPis~~~fS--~d----s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-~v~~~~fhP~-----~~~----~~lat~s 238 (459)
T KOG0272|consen 175 TRPISGCSFS--RD----SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-RVGAAVFHPV-----DSD----LNLATAS 238 (459)
T ss_pred CCcceeeEee--cC----CCeEEEeecCCceeEeecCCcceeEEEecccc-ceeeEEEccC-----CCc----cceeeec
Confidence 4689999999 98 89999999 99999999999999999999887 7999999953 123 45555 4
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.||++++|+++. ..++..+.+|..+|..++|+| +|++|+|++.|.+-++||++++..+....
T Consensus 239 ~Dgtvklw~~~~---------------e~~l~~l~gH~~RVs~VafHP---sG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 239 ADGTVKLWKLSQ---------------ETPLQDLEGHLARVSRVAFHP---SGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred cCCceeeeccCC---------------CcchhhhhcchhhheeeeecC---CCceeeecccccchhhcccccchhhHhhc
Confidence 599999999985 357888999999999999999 99999999999999999999999888777
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|... +++++| .+||.++++|+.|..-+|||++ ++.++..+.|
T Consensus 301 GHs~~-v~~iaf---~~DGSL~~tGGlD~~~RvWDlR---------------------------------tgr~im~L~g 343 (459)
T KOG0272|consen 301 GHSKG-VFSIAF---QPDGSLAATGGLDSLGRVWDLR---------------------------------TGRCIMFLAG 343 (459)
T ss_pred ccccc-cceeEe---cCCCceeeccCccchhheeecc---------------------------------cCcEEEEecc
Confidence 77664 677777 5889999999999999999999 8999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~ 331 (1088)
|...|.+|+|+|+|-.++|||.|++++|||++..+ ++ +++.+|..-|+.++|. +.+|+|++.|++++
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~--------~l--y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS--------EL--YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccc--------cc--eecccccchhhheEecccCCeEEEEcccCccee
Confidence 99999999999999999999999999999999853 33 4889999999999998 68999999999999
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+|.. +..+++.+.+|.++ |.++++++|+..++|++.|+++++|.
T Consensus 414 iWs~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 414 IWSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence 9999 78999999999995 99999999999999999999999995
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=300.48 Aligned_cols=626 Identities=15% Similarity=0.210 Sum_probs=393.1
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
+.++|.|.+..|.+||..+...+.++.+|.. +|.++.+-| +.+....++....|+.|++|.++.+.
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a-~VnC~~~l~-------~s~~~a~~vsG~sD~~v~lW~l~~~~------ 90 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILIVTTLDGHVA-RVNCVHWLP-------TSEIVAEMVSGDSDGRVILWKLRDEY------ 90 (764)
T ss_pred cceEEecCCceEEEeCcccceeEEeccCCcc-ceEEEEEcc-------cccccceEEEccCCCcEEEEEEeehh------
Confidence 4688889999999999998877888888776 899999984 33212234444459999999999443
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce--EEEeccCC-ceeEEEEeeecCCC
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPE-RCLLYSMKLWGDNL 191 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--~~~~~~~~-~~~~~s~~~~~~s~ 191 (1088)
...+.++.+|...+.|+.=.+ ..+.+...|+++.+||.+..+. ...+.-.. ..+..++++.+ .+
T Consensus 91 -------~~~i~~~~g~~~~~~cv~a~~-----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~ 157 (764)
T KOG1063|consen 91 -------LIKIYTIQGHCKECVCVVARS-----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NN 157 (764)
T ss_pred -------eEEEEeecCcceeEEEEEeee-----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cC
Confidence 677788888766555554322 3333336899999999965552 22221111 11112233332 33
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC--
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-- 269 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-- 269 (1088)
+.-+++.|+.+..|.++.-.. .+.+.+..+.||+++|.+++|...+.
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~-------------------------------d~f~~v~el~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSA-------------------------------DSFARVAELEGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred CcEEEEecCcceEEEEeccCC-------------------------------cceeEEEEeeccchhhhhhhhhccCCCc
Confidence 444566777777777776430 14567888999999999999986544
Q ss_pred -EEEEEECCCcEEEEEcCCCcccC----C--------CC----ceeee-----ceeeeccCcceEEEEECC--CEEEEEe
Q 001391 270 -KLVSVSDDRSARIWEVRAEYWKD----S--------DS----IEEVG-----SSVLYGHNARVWDCCLTD--SFIITAG 325 (1088)
Q Consensus 270 -~l~s~s~Dg~v~iWd~~~~~~~~----~--------~~----~~~i~-----~~~~~~h~~~I~~v~~~~--~~l~sg~ 325 (1088)
+|+|+|.|+.||||.+.-..... . .+ ...+. ...+.||...|.++.|++ ..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 78999999999999986543110 0 00 00111 014569999999999994 4799999
Q ss_pred CCCcEEEEcCCCc--------eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCC
Q 001391 326 EDCTCRVWGSDGK--------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397 (1088)
Q Consensus 326 ~Dg~i~vWd~~~~--------~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 397 (1088)
.|.++.+|..+.+ .+..+.+..+ +.+...|+|+++.+++-|+-|..++|....
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~-GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d------------------ 347 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAG-GFWGGLWSPNSNVIIAHGRTGGFHLWKTKD------------------ 347 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeeccccccc-ceeeEEEcCCCCEEEEecccCcEEEEeccC------------------
Confidence 9999999998322 1222333334 689999999999999999999999998321
Q ss_pred cceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCe-EEEEEeccCCcceeEEeeeec-CCcceEEEecCCC
Q 001391 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY-LYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSN 475 (1088)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~-i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~ 475 (1088)
...+. +.....+|.+.|+.++|.|.|.+|.+.+..+ -..+.-| .+...|..+.+.+ ++..+.|+++.+.
T Consensus 348 ~~~w~--------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 348 KTFWT--------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cccee--------eccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccC
Confidence 11111 1222346667899999999998877765544 2222233 2333477665433 5777888887552
Q ss_pred CCCCcCCCCCeEEEecCCCCEEEEEEcCCC----------------------cCcceee---------------------
Q 001391 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDV----------------------HTPQLSF--------------------- 512 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~~dg~I~iw~~~~~~----------------------~~~~~~~--------------------- 512 (1088)
+-.+++|.....+|+|+....- ..|...+
T Consensus 419 --------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 419 --------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred --------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 2456666666677777643100 0000000
Q ss_pred ---------------------eeeeec-----cccceeeeEEEeecCCCeEEEEECCCC-----eEEEEecCCCCCcccc
Q 001391 513 ---------------------TFTWSA-----GIERQLLGTYWCKSLGHRFIFTADPKG-----RLKLWQLCDPFSSVCY 561 (1088)
Q Consensus 513 ---------------------~~~~~~-----~~~~~~~~~~~~~s~dg~~L~s~~~dg-----~i~vwd~~~~~~~~~~ 561 (1088)
...|+. ++.-.+. -.+.+|+++++++++... .|++|+...-.+.+
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~--~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-- 566 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVY--ALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-- 566 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEE--EEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh--
Confidence 000000 0000111 135678899999887543 78999987554221
Q ss_pred cCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccccccccee
Q 001391 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (1088)
Q Consensus 562 ~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vt 641 (1088)
. ...|...|+.|+|||||++|++.|+|.++.+|...++.. .... ....+ .|. --|-
T Consensus 567 ------------~-L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~------~e~~---fa~~k-~Ht-RIIW 622 (764)
T KOG1063|consen 567 ------------E-LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK------DEFR---FACLK-AHT-RIIW 622 (764)
T ss_pred ------------e-ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc------hhhh---hcccc-ccc-eEEE
Confidence 1 347999999999999999999999999999999865422 1111 11223 343 2466
Q ss_pred EEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeC
Q 001391 642 TLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721 (1088)
Q Consensus 642 sv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~ 721 (1088)
..+|+ +++.+++|+|||..+++|..+..... .......++-...+..+.+.+........++++|+..+.+++|+.
T Consensus 623 dcsW~---pde~~FaTaSRDK~VkVW~~~~~~d~-~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 623 DCSWS---PDEKYFATASRDKKVKVWEEPDLRDK-YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred EcccC---cccceeEEecCCceEEEEeccCchhh-hhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 77777 67788999999999999999876321 111111111122233333332211222447899999999999996
Q ss_pred CcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEecccccc
Q 001391 722 ITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQV 801 (1088)
Q Consensus 722 ~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~ 801 (1088)
....+..++. .|.+ . .+.-..+.|...|+-+++.|. -
T Consensus 699 ~~~~~~~~~~------~~~~----------------------~------------~~l~~~~~~~~aV~rl~w~p~---~ 735 (764)
T KOG1063|consen 699 KREHRQVTVG------TFNL----------------------D------------TRLCATIGPDSAVNRLLWRPT---C 735 (764)
T ss_pred ccccccccce------eeee----------------------c------------cccccccChHHhhheeEeccc---c
Confidence 5333211110 0000 0 112234588899999999853 1
Q ss_pred ccccccccCCCceEEEeccCCceEEEEEec
Q 001391 802 GANVKKSALNKSSWIATGCEDGTVRLTRYS 831 (1088)
Q Consensus 802 ~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~ 831 (1088)
+. +.....+.+-++.|+||.++||+++.
T Consensus 736 ~~--~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 736 SD--DWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cc--ccccccceeEEeeecccceeEEeecc
Confidence 10 01122345678999999999999864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=278.24 Aligned_cols=284 Identities=17% Similarity=0.289 Sum_probs=248.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+.|.++.|+ +| .++|++++ ||.+.|||.-|...++.+..... .|...+|+ |.| ..+|++
T Consensus 54 H~~Ki~~~~ws--~D----sr~ivSaSqDGklIvWDs~TtnK~haipl~s~-WVMtCA~s-------PSg----~~VAcG 115 (343)
T KOG0286|consen 54 HLNKIYAMDWS--TD----SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-WVMTCAYS-------PSG----NFVACG 115 (343)
T ss_pred cccceeeeEec--CC----cCeEEeeccCCeEEEEEcccccceeEEecCce-eEEEEEEC-------CCC----CeEEec
Confidence 78999999999 99 88999988 89999999999988888887555 79999999 777 788888
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
| |+...||++......+ ..+..+.+.+|++.+.|+.|.+ | ..|+|++.|.++.+||+++++.+..+
T Consensus 116 GLdN~Csiy~ls~~d~~g---------~~~v~r~l~gHtgylScC~f~d---D-~~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG---------NVRVSRELAGHTGYLSCCRFLD---D-NHILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CcCceeEEEecccccccc---------cceeeeeecCccceeEEEEEcC---C-CceEecCCCceEEEEEcccceEEEEe
Confidence 8 9999999999653111 1355677899999999999986 5 45779999999999999999999999
Q ss_pred ccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
.+|... +.++.+ +| +++.+++|+-|+..++||++ .+...+.|
T Consensus 183 ~GH~gD-V~slsl---~p~~~ntFvSg~cD~~aklWD~R---------------------------------~~~c~qtF 225 (343)
T KOG0286|consen 183 HGHTGD-VMSLSL---SPSDGNTFVSGGCDKSAKLWDVR---------------------------------SGQCVQTF 225 (343)
T ss_pred cCCccc-EEEEec---CCCCCCeEEecccccceeeeecc---------------------------------CcceeEee
Confidence 988765 446665 45 88999999999999999999 78899999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i 330 (1088)
.||+..|++|.|.|+|.-+++||+|++.|+||++..+. +..+.-..-..+|++++|+ |.+|+.|..|.++
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~--------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c 297 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE--------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTC 297 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE--------EeeeccCcccCCceeEEEcccccEEEeeecCCce
Confidence 99999999999999999999999999999999998643 3212223334579999998 8999999999999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
.+||. .++.+..+.+|.++ |.++..+|||.-++||+.|.++|||.
T Consensus 298 ~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 298 NVWDTLKGERVGVLAGHENR-VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEeeccccceEEEeeccCCe-eEEEEECCCCcEEEecchhHheeecC
Confidence 99998 89999999999995 99999999999999999999999994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=295.05 Aligned_cols=461 Identities=15% Similarity=0.222 Sum_probs=324.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
++..|.+|.|+ |. ..+++++- .|.|+|||.++...++.|.+-+- +|....|- ... +-+++.+
T Consensus 12 rSdRVKsVd~H--Pt----ePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfi-------aRk---nWiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFH--PT----EPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFI-------ARK---NWIVTGS 74 (794)
T ss_pred cCCceeeeecC--CC----CceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheee-------ecc---ceEEEec
Confidence 56789999999 98 88888887 89999999999999999998555 89999997 332 2556666
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceEEEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~~~~ 173 (1088)
+|..||||+..+ .+.+..+..|++-|.+++.+| ...++.|++.|-+|++||.+.. .+.+++
T Consensus 75 DD~~IrVfnynt---------------~ekV~~FeAH~DyIR~iavHP---t~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 75 DDMQIRVFNYNT---------------GEKVKTFEAHSDYIRSIAVHP---TLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred CCceEEEEeccc---------------ceeeEEeeccccceeeeeecC---CCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 789999999986 678999999999999999999 9999999999999999999865 456667
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
++|+. .+..+++ ++.|.+.+|+++-|++|+||.+. ...+..++.
T Consensus 137 eGH~H-yVMqv~f--nPkD~ntFaS~sLDrTVKVWslg---------------------------------s~~~nfTl~ 180 (794)
T KOG0276|consen 137 EGHEH-YVMQVAF--NPKDPNTFASASLDRTVKVWSLG---------------------------------SPHPNFTLE 180 (794)
T ss_pred cCcce-EEEEEEe--cCCCccceeeeeccccEEEEEcC---------------------------------CCCCceeee
Confidence 77664 3445555 35677899999999999999998 677889999
Q ss_pred CCCCCEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCc
Q 001391 254 GHEGSIFRIEWSSCG--SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCT 329 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g--~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~ 329 (1088)
||+..|++|.|-+.| .+|+||++|.+|++||..+. ++++ ++.||...|..++|++ ..++||++||+
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk--------~CV~--TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK--------SCVQ--TLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchH--------HHHH--HhhcccccceEEEecCCCcEEEEecCCcc
Confidence 999999999998754 79999999999999999995 4555 8999999999999996 68999999999
Q ss_pred EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCC
Q 001391 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
+|+|.. +-+...++...-+ .||+++..+.++.++.|...|.|.+ .+ +......+. ....+-+....++.......
T Consensus 251 vriWhs~Ty~lE~tLn~gle-RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd-~~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNYGLE-RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMD-SNGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred EEEecCcceehhhhhhcCCc-eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeec-CCccEEEEcCceeeeeecee
Confidence 999998 6666667766666 5999999998888888887777655 34 221111111 11111112222222221111
Q ss_pred Cc------------cceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCC
Q 001391 408 FS------------EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN 475 (1088)
Q Consensus 408 ~~------------~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 475 (1088)
.. ..+..+..-+-+...++.+|+|++++.+++|....+.- ..|+.-.-|.. +++.+.
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa-----la~RnK~fG~~------~eFvw~ 396 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA-----LALRNKAFGSG------LEFVWA 396 (794)
T ss_pred ccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEe-----eehhhcccccc------eeEEEc
Confidence 10 00111111223456788999999999999998554321 11211111221 222221
Q ss_pred CCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
.+.+.+++-..++.|+++ .+.+.... +...+ .+...-|..|+....++.+++||.+.+
T Consensus 397 ------~dsne~avRes~~~vki~--knfke~ks--i~~~~------------~~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 397 ------ADSNEFAVRESNGNVKIF--KNFKEHKS--IRPDM------------SAEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred ------CCCCeEEEEecCCceEEE--ecceeccc--ccccc------------ceeeecCCceEEEEeCCeEEEEEcccc
Confidence 244778888888999998 33221111 11100 112222344555556677999998755
Q ss_pred CCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 556 ~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
. ++... .-..-.+.|+.+|.++++++.+. .+|+.++..
T Consensus 455 ~--------------lVrrI----~v~~k~v~w~d~g~lVai~~d~S-fyil~~n~d 492 (794)
T KOG0276|consen 455 E--------------LVRRI----EVTSKHVYWSDNGELVAIAGDDS-FYILKFNAD 492 (794)
T ss_pred e--------------EEEEE----eeccceeEEecCCCEEEEEecCc-eeEEEecHH
Confidence 3 22221 11234678999999999988775 666666654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=297.06 Aligned_cols=522 Identities=13% Similarity=0.125 Sum_probs=347.8
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-C--CeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
+|.++|..+.. +..+++||+|| ++ |+|+|+|. + +.++||+++.-..++.|..|+- .|.+++|+
T Consensus 59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS--~~----GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY-~vtcvaFs 131 (1080)
T KOG1408|consen 59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFS--QN----GRYVATGECGRTPASKVWSLAFHGVVAEFVDHKY-NVTCVAFS 131 (1080)
T ss_pred EEEEEcccccchhheecccCcceeEEEEc--CC----CcEEEecccCCCccceeeeeccccchhhhhhccc-cceeeeec
Confidence 46778877655 34689999999 99 99999998 4 8999999999889999998776 69999999
Q ss_pred ccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|.+ .++++-| |--|.+|++.... ...-..-...|..++|+. ||.+++
T Consensus 132 -------p~~----kyvvSVGsQHDMIVnv~dWr~N~----------------~~asnkiss~Vsav~fsE---dgSYfv 181 (1080)
T KOG1408|consen 132 -------PGN----KYVVSVGSQHDMIVNVNDWRVNS----------------SGASNKISSVVSAVAFSE---DGSYFV 181 (1080)
T ss_pred -------CCC----cEEEeeccccceEEEhhhhhhcc----------------cccccccceeEEEEEEcc---CCceee
Confidence 666 4555544 6678999887432 011113456799999999 999999
Q ss_pred EEEcCCcEEEEEcCCCceEE-------------Eec--------cCCc---eeEEEEee----ecC--------------
Q 001391 152 IGCSDNSIRVWDISNSSIIL-------------EVH--------SPER---CLLYSMKL----WGD-------------- 189 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~-------------~~~--------~~~~---~~~~s~~~----~~~-------------- 189 (1088)
|.+ ...|++|.++.++... .+. +..+ ...|.+.. +.+
T Consensus 182 T~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRT 260 (1080)
T KOG1408|consen 182 TSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRT 260 (1080)
T ss_pred eee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhc
Confidence 987 6789999997665210 000 1100 00111110 000
Q ss_pred ------CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEE
Q 001391 190 ------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (1088)
Q Consensus 190 ------s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~ 263 (1088)
..+..+|+.|+.+|.|++|+..+-+..+.+...-....+-... . .. .......-.+--....++.
T Consensus 261 TnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~-----~--q~--~~~~s~~~~a~fPD~IA~~ 331 (1080)
T KOG1408|consen 261 TNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL-----S--QP--EPKNSESSPAIFPDAIACQ 331 (1080)
T ss_pred cccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhc-----c--cc--cccccccCcccCCceeEEE
Confidence 1246789999999999999988654433222111110000000 0 00 0000000111223345778
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-------------CCEEEEEeCCCcE
Q 001391 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------------DSFIITAGEDCTC 330 (1088)
Q Consensus 264 ~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-------------~~~l~sg~~Dg~i 330 (1088)
|+|....|.....|..+++||++.-.. .... ..+.-|...||++.-- +..++|++.|++|
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~k-----vgk~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNK-----VGKC--SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEecccccc-----ccce--eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 999999999999999999999998533 2222 3667799999988642 3579999999999
Q ss_pred EEEcCCC----ceeE----------E------------------------EcccCCCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 331 RVWGSDG----KQLK----------M------------------------IKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 331 ~vWd~~~----~~~~----------~------------------------~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
|+|++.+ ...+ . ...... ++.+++++|+|++|++|..-|++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~-G~R~~~vSp~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF-GFRALAVSPDGQHLASGDRGGNL 483 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc-ceEEEEECCCcceecccCccCce
Confidence 9999843 2110 0 001112 69999999999999999999999
Q ss_pred EEEEcCC-CCCCcccCCcccc---ccC-------------CCcceEEeeeCCCccceeeccCCCCceEEEEeccCC---e
Q 001391 373 KVHQFQA-FLPGSLESHPEAK---EFN-------------GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED---T 432 (1088)
Q Consensus 373 ~iwd~~~-~~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~---~ 432 (1088)
++|++.. ..+..++.|...+ .++ .+.-+...........++.+++|...|+++.|...| +
T Consensus 484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence 9999954 3334444444211 111 222222222233334566778899999999999876 5
Q ss_pred EEEEecCCeEEEEEecc-CCcce-eEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcce
Q 001391 433 LYIATNHGYLYHTKLCD-MDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQL 510 (1088)
Q Consensus 433 ll~~t~~g~i~~~~~~~-~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~ 510 (1088)
++.++.+..++ ++... ...+. +.+-.+.-....++.|++.++. .++++++.|.+|+||+++++++..
T Consensus 564 MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~--------k~v~t~cQDrnirif~i~sgKq~k-- 632 (1080)
T KOG1408|consen 564 MISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS--------KLVVTVCQDRNIRIFDIESGKQVK-- 632 (1080)
T ss_pred EEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCc--------ceEEEEecccceEEEeccccceee--
Confidence 55555555543 22222 11121 1111111224568888887764 899999999999999999887543
Q ss_pred eeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeee
Q 001391 511 SFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF 590 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~sp 590 (1088)
.++....+++.+.. ....|.|.||++...|.++.++|...+ ++++. ..+|.+.||.+.|++
T Consensus 633 --~FKgs~~~eG~lIK--v~lDPSgiY~atScsdktl~~~Df~sg--------------EcvA~-m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 633 --SFKGSRDHEGDLIK--VILDPSGIYLATSCSDKTLCFVDFVSG--------------ECVAQ-MTGHSEAVTGVKFLN 693 (1080)
T ss_pred --eecccccCCCceEE--EEECCCccEEEEeecCCceEEEEeccc--------------hhhhh-hcCcchheeeeeecc
Confidence 22333344444444 346789999999999999999999865 45555 348999999999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCc
Q 001391 591 EDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 591 dg~~LatGs~dg~I~Iw~~~~ 611 (1088)
|-+.|++.+.||.|.||.++.
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999999885
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=276.08 Aligned_cols=504 Identities=14% Similarity=0.189 Sum_probs=356.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeC---------CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSG---------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d---------~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
|..+|.|++.+ || ...+++|.. +.++|||..+-..++.+..++. .|.+++||+. ..|
T Consensus 103 H~ddikc~~vH--Pd----ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~-GV~~vaFsk~-----~~G-- 168 (626)
T KOG2106|consen 103 HNDDIKCMAVH--PD----RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDR-GVTCVAFSKI-----NGG-- 168 (626)
T ss_pred CCCceEEEeec--CC----ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccc-cceeeeeccc-----CCC--
Confidence 56789999999 99 777776652 3699999888777888776666 6999999965 444
Q ss_pred eeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 87 VTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 87 ~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
.+++.-+ +..+.+||+..+ ......+.-++.|..+.|+| .+.+++++++ .+.+.+|+
T Consensus 169 --~~l~~vD~s~~h~lSVWdWqk~---------------~~~~~vk~sne~v~~a~FHP--td~nliit~G-k~H~~Fw~ 228 (626)
T KOG2106|consen 169 --SLLCAVDDSNPHMLSVWDWQKK---------------AKLGPVKTSNEVVFLATFHP--TDPNLIITCG-KGHLYFWT 228 (626)
T ss_pred --ceEEEecCCCccccchhhchhh---------------hccCcceeccceEEEEEecc--CCCcEEEEeC-CceEEEEE
Confidence 4444433 467999999853 23334445567899999999 2445666665 78999999
Q ss_pred cCCCceEE---EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEec
Q 001391 164 ISNSSIIL---EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1088)
Q Consensus 164 ~~~~~~~~---~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 240 (1088)
.+.+.... .++.+++..+.+++| .+++ -+++|..+|.|.||+..
T Consensus 229 ~~~~~l~k~~~~fek~ekk~Vl~v~F---~eng-dviTgDS~G~i~Iw~~~----------------------------- 275 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEKREKKFVLCVTF---LENG-DVITGDSGGNILIWSKG----------------------------- 275 (626)
T ss_pred ccCCceEEEeeccccccceEEEEEEE---cCCC-CEEeecCCceEEEEeCC-----------------------------
Confidence 99886654 355777788888888 3444 68899999999999987
Q ss_pred ccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCE
Q 001391 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (1088)
Q Consensus 241 ~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~ 320 (1088)
..+..+....|.+.|+++....+|..| ||+.|+.|..||-.- +.+++..+....+.|..++-...-
T Consensus 276 ----~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y---------~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 276 ----TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY---------RKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ----CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc---------cccccccCchhcCCeeEEecCCCc
Confidence 444444555999999999999998755 599999999999322 222222455556677777766333
Q ss_pred EEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcce
Q 001391 321 IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1088)
|+.|...+.|..=.+.+.--....+|.. ..|.++.+|+.++++|++.|+.+++|+ +.+ ..
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~-~~k------------------~~ 401 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN-DHK------------------LE 401 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc-CCc------------------ee
Confidence 7777777777665665544555667877 699999999999999999999999998 221 12
Q ss_pred EEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCC
Q 001391 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKY 479 (1088)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~ 479 (1088)
|+... .+++.|+.|.|.|.+.+++..|..+.++.... . +.+.+ ...++.++...++
T Consensus 402 wt~~~-------------~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~---~---lv~~~~d~~~ls~v~ysp~---- 458 (626)
T KOG2106|consen 402 WTKII-------------EDPAECADFHPSGVVAVGTATGRWFVLDTETQ---D---LVTIHTDNEQLSVVRYSPD---- 458 (626)
T ss_pred EEEEe-------------cCceeEeeccCcceEEEeeccceEEEEecccc---e---eEEEEecCCceEEEEEcCC----
Confidence 33221 24689999999998889999998775554332 2 22222 2678889888654
Q ss_pred cCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcc
Q 001391 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSV 559 (1088)
Q Consensus 480 s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~ 559 (1088)
+.++|+|+.|+.|+||.++.+...-. ..-++. + ..-+...+|+|+++|.+-+.|-.|..|.....++..
T Consensus 459 ----G~~lAvgs~d~~iyiy~Vs~~g~~y~--r~~k~~----g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 459 ----GAFLAVGSHDNHIYIYRVSANGRKYS--RVGKCS----G-SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred ----CCEEEEecCCCeEEEEEECCCCcEEE--Eeeeec----C-ceeEEeeecCCCceEEeccCceEEEEEccccCcccc
Confidence 59999999999999999986543211 111111 1 112225689999999999999999999544333322
Q ss_pred cccCCcccceeeeeee---ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccccc
Q 001391 560 CYESSKTNNVFLVAEF---SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG 636 (1088)
Q Consensus 560 ~~~~~~~~~~~l~~~~---~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg 636 (1088)
+..-.+=.+..+.-.| ...|...|..++-+.+.++||+|+..|.|++|..+-... -.+...+.+ |+
T Consensus 528 s~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~----------rA~~he~~g-hs 596 (626)
T KOG2106|consen 528 SVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSP----------RAPSHEYGG-HS 596 (626)
T ss_pred eecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCC----------cccceeecc-cc
Confidence 2100000011222222 246788899999999999999999999999999874321 122333334 44
Q ss_pred ccceeEEEEEeccCCceEEEEecCCCeEEEEEe
Q 001391 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 637 ~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
..|++|+|+ .+...|+++|.|..|..|++
T Consensus 597 -~~vt~V~Fl---~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 -SHVTNVAFL---CKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -ceeEEEEEe---eCCceEEecCCCceEEEEEe
Confidence 579999999 45577888889999999986
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=261.51 Aligned_cols=280 Identities=21% Similarity=0.321 Sum_probs=236.7
Q ss_pred CCCCCceEEecCCCce-------eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe--eEEEEeeeCCcceEEE
Q 001391 1 MGKKDLSEWRLDVGQY-------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~-------~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i 71 (1088)
|.|.+||+|+..+|.. .+.|.++.+. || +++||++....||+||+.++. .+.+|.+|.. .|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT--pd----k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-NVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEIT--PD----KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-NVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEc--CC----cchhhhccCCeeEEEEccCCCCCceeEEeccCC-ceEEE
Confidence 6899999999999983 3558999999 99 999999999999999999874 6899999877 59999
Q ss_pred EecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l 150 (1088)
.|- .|| +.+.+++ ||+++|||++... . ...-.|...|+++..+| +...|
T Consensus 90 gF~-------~dg----rWMyTgseDgt~kIWdlR~~~---------------~-qR~~~~~spVn~vvlhp---nQteL 139 (311)
T KOG0315|consen 90 GFQ-------CDG----RWMYTGSEDGTVKIWDLRSLS---------------C-QRNYQHNSPVNTVVLHP---NQTEL 139 (311)
T ss_pred EEe-------ecC----eEEEecCCCceEEEEeccCcc---------------c-chhccCCCCcceEEecC---CcceE
Confidence 998 787 6666665 8999999998532 2 22335779999999999 88999
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
++|..+|.|++||+.+..+...+-......+.++.. .+||.+++++...|+.++|++-+....
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v---~~dgsml~a~nnkG~cyvW~l~~~~~~-------------- 202 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV---MPDGSMLAAANNKGNCYVWRLLNHQTA-------------- 202 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEE---cCCCcEEEEecCCccEEEEEccCCCcc--------------
Confidence 999999999999999887777766555566777776 588999999999999999998732111
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
....++..++.|++-|....+|||+++|+++|.|.+++||+.++. -... ..+.+|+..
T Consensus 203 -------------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--------~kle-~~l~gh~rW 260 (311)
T KOG0315|consen 203 -------------SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--------FKLE-LVLTGHQRW 260 (311)
T ss_pred -------------ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--------eeeE-EEeecCCce
Confidence 145678889999999999999999999999999999999999884 1222 388999999
Q ss_pred eEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEc
Q 001391 311 VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (1088)
Q Consensus 311 I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~ 357 (1088)
+|+++|+ +.+|+||+.|+++++|++ .++.++...+|.. +..+++.+
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln 309 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN 309 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence 9999999 789999999999999999 8899999999987 56666654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=261.66 Aligned_cols=298 Identities=16% Similarity=0.221 Sum_probs=228.3
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-----CceEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-----~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
+.+..++++|+++|..++..+. +.+.+++++.|.++.+|++.. |..++.+.+|+.- +..+.+ ++++.+.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~--~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~-v~dv~~---s~dg~~a 78 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIK--NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF-VSDVVL---SSDGNFA 78 (315)
T ss_pred heeeeeecCCCceEEEEEeecC--CCceEEEcccceEEEEEEeccCccccCceeeeeeccceE-ecceEE---ccCCceE
Confidence 5667789999999999999981 457899999999999999864 4557777776543 333433 6899999
Q ss_pred EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 197 ~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
++++.|+++++||+. +++..+.|.||...|.+++|+||.+.++|||.
T Consensus 79 lS~swD~~lrlWDl~---------------------------------~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLA---------------------------------TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred EeccccceEEEEEec---------------------------------CCcEEEEEEecCCceEEEEecCCCceeecCCC
Confidence 999999999999999 77889999999999999999999999999999
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC----CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCe
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~----~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V 351 (1088)
|++|++||+-... .+. ..-..|...|.|++|+| .+|++++.|+++++||+ +-+....+.+|.+ .+
T Consensus 126 DkTiklwnt~g~c--------k~t-~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v 195 (315)
T KOG0279|consen 126 DKTIKLWNTLGVC--------KYT-IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YV 195 (315)
T ss_pred cceeeeeeecccE--------EEE-EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cE
Confidence 9999999998742 221 12223478999999984 58999999999999999 5566677899999 69
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
+.++++|||.++++||.||.+.+||++. +.+.++ .+...|++++|+|+
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-------------------------------~a~~~v~sl~fspn 244 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-------------------------------EAFDIVNSLCFSPN 244 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEec-------------------------------cCCCeEeeEEecCC
Confidence 9999999999999999999999999953 221111 12346788888876
Q ss_pred CeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcce
Q 001391 431 DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQL 510 (1088)
Q Consensus 431 ~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~ 510 (1088)
...++...... |+||+++++......
T Consensus 245 rywL~~at~~s------------------------------------------------------IkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 245 RYWLCAATATS------------------------------------------------------IKIWDLESKAVVEEL 270 (315)
T ss_pred ceeEeeccCCc------------------------------------------------------eEEEeccchhhhhhc
Confidence 54444432222 455555444443333
Q ss_pred eeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecC
Q 001391 511 SFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~ 553 (1088)
.+.......+...+....+++++||+.|++|-.|+.|++|.+.
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3332222222333445557899999999999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=285.86 Aligned_cols=287 Identities=18% Similarity=0.287 Sum_probs=242.2
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+...-.|-+.+|..+.|++ |+..||||+.+|.+++|+..+...+.++.+|... +..+.|++.. ++..+|+++.||
T Consensus 167 l~~SQ~gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~-v~~~~fhP~~-~~~~lat~s~Dg 241 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR-VGAAVFHPVD-SDLNLATASADG 241 (459)
T ss_pred hhhhhccCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccc-eeeEEEccCC-CccceeeeccCC
Confidence 3344446778999999999 9999999999999999999999889998887653 4566665442 577999999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
++++|++. ...++..+.||...|..++|+|+|++|+|+|.|.+-|+|
T Consensus 242 tvklw~~~---------------------------------~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 242 TVKLWKLS---------------------------------QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred ceeeeccC---------------------------------CCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 99999998 668899999999999999999999999999999999999
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
|+.++.. + ....||...|.+++|. |.+++|||.|..-||||+ +|+++..+.+|.. +|.+++|+|+|
T Consensus 289 D~~tk~E--------l--L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNG 357 (459)
T KOG0272|consen 289 DLETKSE--------L--LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNG 357 (459)
T ss_pred ccccchh--------h--HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCc
Confidence 9999632 2 2668999999999998 799999999999999999 9999999999998 79999999999
Q ss_pred CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc-CCeEEEEe-c
Q 001391 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIAT-N 438 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~ll~~t-~ 438 (1088)
..|+|||.|++++|||++... .++.+..|..-|..++|+| .|.+++++ -
T Consensus 358 y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 358 YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEecccCCeEEEEccc
Confidence 999999999999999996421 1334456667899999998 55666654 4
Q ss_pred CCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 439 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
|+.+ ++|...+....+.+.|| +..|.++++.++ ++.+++++.|.++++|.
T Consensus 409 D~t~---kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d--------~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTV---KIWSTRTWSPLKSLAGH-EGKVISLDISPD--------SQAIATSSFDRTIKLWR 458 (459)
T ss_pred Ccce---eeecCCCcccchhhcCC-ccceEEEEeccC--------CceEEEeccCceeeecc
Confidence 4444 47777765555667777 567999999554 58999999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-29 Score=283.64 Aligned_cols=310 Identities=19% Similarity=0.307 Sum_probs=248.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
.+..|.+++|+ |. +.+++++- .|.|++||..=+.++..|..|++ +|.+++|+ |.+ .+++++
T Consensus 8 kSsRvKglsFH--P~----rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-pVRgv~FH-------~~q----plFVSG 69 (1202)
T KOG0292|consen 8 KSSRVKGLSFH--PK----RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-PVRGVDFH-------PTQ----PLFVSG 69 (1202)
T ss_pred ccccccceecC--CC----CCEEEEeecCceeeeehhhhhhHHhhhhccCC-ccceeeec-------CCC----CeEEec
Confidence 35679999999 98 99999998 79999999999999999999888 89999999 665 677777
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
| |..|+||+... .+++.++.||-+-|..+.|++ .-..++++|.|.+|+||+..+++++..+
T Consensus 70 GDDykIkVWnYk~---------------rrclftL~GHlDYVRt~~FHh---eyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKT---------------RRCLFTLLGHLDYVRTVFFHH---EYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred CCccEEEEEeccc---------------ceehhhhccccceeEEeeccC---CCceEEEccCCCeEEEEeccCCceEEEE
Confidence 6 78999999985 468889999999999999999 8899999999999999999999999999
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.+|.. .+.++.|+ |...++++++-|.+|+|||+..-+......+.....+.+.+ ....++.. .....-+.+.
T Consensus 132 tGHnH-YVMcAqFh---ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~---~~~dLfg~-~DaVVK~VLE 203 (1202)
T KOG0292|consen 132 TGHNH-YVMCAQFH---PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ---GNSDLFGQ-TDAVVKHVLE 203 (1202)
T ss_pred ecCce-EEEeeccC---CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc---cchhhcCC-cCeeeeeeec
Confidence 88765 34456664 66789999999999999999832221111110000000000 01111111 0223345678
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCR 331 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~ 331 (1088)
||...|+.++|+|.-..++||++|+.|++|.++..+. -++. +..||...|.++-|++ ++|+|.++|++||
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------WEvD--tcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------WEVD--TCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccc------eeeh--hhhcccCCcceEEecCccceeEecCCCccEE
Confidence 9999999999999999999999999999999987543 3344 7899999999999996 8999999999999
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|||+ ..+.+++++..++ ..|.++.+|..++++. +.|+-+.+|.++.
T Consensus 276 VwDm~kRt~v~tfrrend-RFW~laahP~lNLfAA-gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 276 VWDMTKRTSVQTFRREND-RFWILAAHPELNLFAA-GHDSGMIVFKLER 322 (1202)
T ss_pred EEecccccceeeeeccCC-eEEEEEecCCcceeee-ecCCceEEEEEcc
Confidence 9999 5677888877666 4999999999986665 5567788888853
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=257.52 Aligned_cols=282 Identities=19% Similarity=0.333 Sum_probs=230.7
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
-+|++++ |.+||+|...+|++.++++..++ .|..+.++ ||+ ..||+++...||+||++...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~ds-qVNrLeiT-------pdk----~~LAaa~~qhvRlyD~~S~n------ 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDS-QVNRLEIT-------PDK----KDLAAAGNQHVRLYDLNSNN------ 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCcc-ceeeEEEc-------CCc----chhhhccCCeeEEEEccCCC------
Confidence 4566644 99999999999999999998666 69999999 887 79999999999999999755
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (1088)
..++.++.+|+..|.++.|.. +|+.++|||+||+++|||++...+...+... +.+.++.+ .|+..
T Consensus 73 -------p~Pv~t~e~h~kNVtaVgF~~---dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvl---hpnQt 137 (311)
T KOG0315|consen 73 -------PNPVATFEGHTKNVTAVGFQC---DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVL---HPNQT 137 (311)
T ss_pred -------CCceeEEeccCCceEEEEEee---cCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEe---cCCcc
Confidence 457899999999999999999 9999999999999999999987666555433 34455555 36778
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-EeCCCCCEEEEEEcCCCCEEEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGSKLVS 273 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~v~~sp~g~~l~s 273 (1088)
-|++|+.+|.|++||+. ....... +..-...|.++...|||++++.
T Consensus 138 eLis~dqsg~irvWDl~---------------------------------~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLG---------------------------------ENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred eEEeecCCCcEEEEEcc---------------------------------CCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 89999999999999998 2222222 2334467999999999999999
Q ss_pred EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCC--ceeEEEcccCCC
Q 001391 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG--KQLKMIKEHIGR 349 (1088)
Q Consensus 274 ~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~--~~~~~~~~h~~~ 349 (1088)
+...|...+|++-..... ...+++. .+..|+..+..+.++ ..+|++++.|.+++||+.++ +....+.+|.+
T Consensus 185 ~nnkG~cyvW~l~~~~~~--s~l~P~~--k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r- 259 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTA--SELEPVH--KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR- 259 (311)
T ss_pred ecCCccEEEEEccCCCcc--ccceEhh--heecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-
Confidence 999999999999875431 1123333 678899999999999 58999999999999999954 45567889988
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCC
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESH 388 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~ 388 (1088)
-+|.++|+.||.||+||+.|+.+++|++.. +.++...+|
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 699999999999999999999999999943 333433333
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-28 Score=269.21 Aligned_cols=608 Identities=15% Similarity=0.152 Sum_probs=369.4
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE--cCCcEEEEEcCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDISN 166 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs--~Dg~V~iWd~~~ 166 (1088)
.+++.-.+..|.+||.+.. +.-+-+..|...+++++|++ +|+++|+|- ....+++|++..
T Consensus 50 gl~aYpAGCvVVlfn~~~~---------------tQ~hlvnssRk~~t~vAfS~---~GryvatGEcG~~pa~kVw~la~ 111 (1080)
T KOG1408|consen 50 GLCAYPAGCVVVLFNVDSC---------------TQSHLVNSSRKPLTCVAFSQ---NGRYVATGECGRTPASKVWSLAF 111 (1080)
T ss_pred cceeeccCcEEEEEccccc---------------chhheecccCcceeEEEEcC---CCcEEEecccCCCccceeeeecc
Confidence 5666667889999998842 33344567788999999999 999999984 567799999998
Q ss_pred CceEEEeccCCceeEEEEeeecCCCCCcEEEEEec--CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccc
Q 001391 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1088)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~--dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 244 (1088)
...+.++..|... +.+++ ++|.+.++++.+. |-.|.+||++
T Consensus 112 h~vVAEfvdHKY~-vtcva---Fsp~~kyvvSVGsQHDMIVnv~dWr--------------------------------- 154 (1080)
T KOG1408|consen 112 HGVVAEFVDHKYN-VTCVA---FSPGNKYVVSVGSQHDMIVNVNDWR--------------------------------- 154 (1080)
T ss_pred ccchhhhhhcccc-ceeee---ecCCCcEEEeeccccceEEEhhhhh---------------------------------
Confidence 8888777765432 23333 4788999987554 4567789987
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-------
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------- 317 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~------- 317 (1088)
...... -..-...|..++|+.||.+++|++. +.|++|.+...+. .+ .+..+.+...-.-.+.+.
T Consensus 155 ~N~~~a-snkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~K-----yk--dpiPl~gRs~~lg~lr~n~f~avaC 225 (1080)
T KOG1408|consen 155 VNSSGA-SNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSK-----YK--DPIPLPGRSYFLGNLRFNEFLAVAC 225 (1080)
T ss_pred hccccc-ccccceeEEEEEEccCCceeeeeee-eeEEEEEeecccc-----cc--CCccccchhhhccccccchhhhhhh
Confidence 111111 1123466899999999999999865 6899999987642 00 001222222211112111
Q ss_pred --C----CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC-CCCccc-CCc
Q 001391 318 --D----SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLE-SHP 389 (1088)
Q Consensus 318 --~----~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~-~~~~~~-~~~ 389 (1088)
+ ..++. ...|.+.-|.- .+.+.++-.-......+|+++. ++|++|+.+|.|++++..+. ...+++ .|.
T Consensus 226 g~gicAestfai-t~qGhLvEFSs-RRLLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 226 GVGICAESTFAI-TAQGHLVEFSS-RRLLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred cCcccccceEEE-ecccceeeech-hhhhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccc
Confidence 1 12221 11222222221 1122111111111345666654 68999999999999998542 222221 111
Q ss_pred cccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceE
Q 001391 390 EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (1088)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 468 (1088)
.. .+.. .+..++ ..............-.+.|.+.. ++.+.-++..+|.|++.+.....-... -..+...|+
T Consensus 302 lg----~d~a--~~~q~~-~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s-~lyHS~ciW 373 (1080)
T KOG1408|consen 302 LG----SDTA--NLSQPE-PKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS-MLYHSACIW 373 (1080)
T ss_pred cc----cchh--hccccc-ccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceee-eeeccceee
Confidence 00 0000 000000 00000011111123455677654 566667888899888877654331111 122345566
Q ss_pred EEecCCCC---CCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcc---eeee-----eeee--------------------
Q 001391 469 CMDLLSNE---PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ---LSFT-----FTWS-------------------- 517 (1088)
Q Consensus 469 ~l~~~~~~---~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~---~~~~-----~~~~-------------------- 517 (1088)
.+...+.+ ....+-...-+.+++.|++|++|++........ ..+. ....
T Consensus 374 ~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~ 453 (1080)
T KOG1408|consen 374 DVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALV 453 (1080)
T ss_pred eeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccch
Confidence 66665532 111122335589999999999999976221111 0000 0000
Q ss_pred c--cccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeee---CC
Q 001391 518 A--GIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF---ED 592 (1088)
Q Consensus 518 ~--~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~sp---dg 592 (1088)
. ...-.+. ..+.||+|++|++|+.-|.+++|++.... .. .+..+|+.+|.|+.||. ..
T Consensus 454 s~~d~r~G~R--~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~--------------~~-~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 454 STCDSRFGFR--ALAVSPDGQHLASGDRGGNLRVYDLQELE--------------YT-CFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred hhcCcccceE--EEEECCCcceecccCccCceEEEEehhhh--------------hh-hheecccceeEEEeecCchhhh
Confidence 0 0000122 24789999999999999999999987432 11 23458999999999994 36
Q ss_pred CEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecC
Q 001391 593 EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 593 ~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
++||+|++|.-|.|||+.++ +.+.+++.+|. +.||+|.|....-+ ..++|+|.|..|.+=.....
T Consensus 517 kLLASasrdRlIHV~Dv~rn------------y~l~qtld~HS--ssITsvKFa~~gln-~~MiscGADksimFr~~qk~ 581 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRN------------YDLVQTLDGHS--SSITSVKFACNGLN-RKMISCGADKSIMFRVNQKA 581 (1080)
T ss_pred HhhhhccCCceEEEEecccc------------cchhhhhcccc--cceeEEEEeecCCc-eEEEeccCchhhheehhccc
Confidence 89999999999999999874 33456666666 68999999954433 77899999987755433322
Q ss_pred CcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEeeCCcCcccccccCCcCCcceE
Q 001391 673 RESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNC 752 (1088)
Q Consensus 673 ~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~ 752 (1088)
..-..|...++.-....+..+..+| ...+++.+.+++++.|+|.......-
T Consensus 582 ~~g~~f~r~t~t~~ktTlYDm~Vdp-----~~k~v~t~cQDrnirif~i~sgKq~k------------------------ 632 (1080)
T KOG1408|consen 582 SSGRLFPRHTQTLSKTTLYDMAVDP-----TSKLVVTVCQDRNIRIFDIESGKQVK------------------------ 632 (1080)
T ss_pred cCceeccccccccccceEEEeeeCC-----CcceEEEEecccceEEEeccccceee------------------------
Confidence 2222333233333355565555432 23357778888888877765433111
Q ss_pred EEEEeccEEEEEeeecccCCCcccccccccccC-cceEEEEEEeccccccccccccccCCCceEEEeccCCceEEEEEec
Q 001391 753 FAYVKDEVIHIHRHWISNGERKMFPKNLHMQFH-GREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYS 831 (1088)
Q Consensus 753 f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~H-g~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~ 831 (1088)
.|.. .+.| |.-|+- ...|. +.||||.+-|.||.+++|.
T Consensus 633 ----------~FKg---------------s~~~eG~lIKv-~lDPS---------------giY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 633 ----------SFKG---------------SRDHEGDLIKV-ILDPS---------------GIYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred ----------eecc---------------cccCCCceEEE-EECCC---------------ccEEEEeecCCceEEEEec
Confidence 1111 1244 555664 22222 6799999999999999998
Q ss_pred CCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEEEEEecceeEEEEEEEEe
Q 001391 832 PGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRH 907 (1088)
Q Consensus 832 ~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~~~ 907 (1088)
. ......+.+|. -+|+.+.|. + |-.-|+|+.+|+-|++|++-.
T Consensus 672 s----gEcvA~m~GHs--E~VTG~kF~--------------------------n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 672 S----GECVAQMTGHS--EAVTGVKFL--------------------------N-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred c----chhhhhhcCcc--hheeeeeec--------------------------c-cchhheeecCCceEEEEECch
Confidence 6 35688999999 999999995 1 345688999999999999964
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-30 Score=272.42 Aligned_cols=315 Identities=16% Similarity=0.256 Sum_probs=254.1
Q ss_pred eeeeeEEEEEeccCCCCCCCC-EEEEEe-CCeEEEEECCC--C--eeEEEEe---------eeCCcceEEEEeccccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDLEA--G--TLIRPFQ---------VFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~-~laag~-d~~I~vwd~~t--g--~~~~~~~---------~~~~~~V~~i~~s~~~~~~ 80 (1088)
|..+|++.+|. |. .. +|++|+ +-.-++|++.. + .....++ .+....|.+++|+
T Consensus 177 ~~~~V~~~~Wn--P~----~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn------ 244 (524)
T KOG0273|consen 177 HESEVFICAWN--PL----RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN------ 244 (524)
T ss_pred CCCceEEEecC--ch----hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec------
Confidence 66789999999 87 44 788888 68999999874 1 1111111 2334579999999
Q ss_pred CCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
.+| .+||++. ||.++||+.. ..++.+|..|.++|.++.|+. +|.+|++++.|+++
T Consensus 245 -~~G----~~LatG~~~G~~riw~~~----------------G~l~~tl~~HkgPI~slKWnk---~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 245 -NDG----TLLATGSEDGEARIWNKD----------------GNLISTLGQHKGPIFSLKWNK---KGTYILSGGVDGTT 300 (524)
T ss_pred -CCC----CeEEEeecCcEEEEEecC----------------chhhhhhhccCCceEEEEEcC---CCCEEEeccCCccE
Confidence 888 5666654 9999999987 567888999999999999999 99999999999999
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
.+||..+++....+.-++.. ...+.+ .+...+++.+.|+.|+|+.+.
T Consensus 301 ilwd~~~g~~~q~f~~~s~~-~lDVdW----~~~~~F~ts~td~~i~V~kv~---------------------------- 347 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAP-ALDVDW----QSNDEFATSSTDGCIHVCKVG---------------------------- 347 (524)
T ss_pred EEEeccCceEEEeeeeccCC-ccceEE----ecCceEeecCCCceEEEEEec----------------------------
Confidence 99999999887777655433 112333 245689999999999999998
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~- 318 (1088)
...++.++.||.+.|.++.|.|.+..|+|+|+|++++||+..... .+. .+.+|...|..+.|+|
T Consensus 348 -----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~--------~~~--~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 348 -----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN--------SVH--DLQAHSKEIYTIKWSPT 412 (524)
T ss_pred -----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc--------chh--hhhhhccceeeEeecCC
Confidence 678899999999999999999999999999999999999987643 333 7889999999999972
Q ss_pred ----------CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCccc
Q 001391 319 ----------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (1088)
Q Consensus 319 ----------~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~ 386 (1088)
..+++++.|+++++||+ .+.++.+|..|.. +|.+++|+|+|+++++|+.||.|.+|+.+. +..+.+.
T Consensus 413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 47999999999999999 9999999999998 899999999999999999999999999853 2222111
Q ss_pred CCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEE-EEecCCeEEEEE
Q 001391 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTK 446 (1088)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll-~~t~~g~i~~~~ 446 (1088)
.++.|..++|+.+|..+ ++.++|.+...+
T Consensus 492 -------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 492 -------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred -------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 12457888898877544 445666665444
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=251.01 Aligned_cols=284 Identities=16% Similarity=0.219 Sum_probs=232.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC-----CCeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE-----AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~-----tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.+.|++++.. +. . ...|++++ |.++.+|++. .|..++.+.+|.- .|..+..+ +||+ +
T Consensus 14 h~d~Vt~la~~--~~--~-~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~s-------~dg~---~ 77 (315)
T KOG0279|consen 14 HTDWVTALAIK--IK--N-SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVLS-------SDGN---F 77 (315)
T ss_pred CCceEEEEEee--cC--C-CceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEEc-------cCCc---e
Confidence 67899999998 65 2 34666666 8999999874 4778999999655 79999999 8884 6
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
.|..+-|+++++||+.. .+..+.|.||...|.+++|+| |.+.+++|+.|++|++|++.....
T Consensus 78 alS~swD~~lrlWDl~~---------------g~~t~~f~GH~~dVlsva~s~---dn~qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLAT---------------GESTRRFVGHTKDVLSVAFST---DNRQIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred EEeccccceEEEEEecC---------------CcEEEEEEecCCceEEEEecC---CCceeecCCCcceeeeeeecccEE
Confidence 66666799999999995 356788899999999999999 999999999999999999966544
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
.......++..+.+++|++. .+...|++++.|+++++||++ ..+..
T Consensus 140 ~t~~~~~~~~WVscvrfsP~-~~~p~Ivs~s~DktvKvWnl~---------------------------------~~~l~ 185 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPN-ESNPIIVSASWDKTVKVWNLR---------------------------------NCQLR 185 (315)
T ss_pred EEEecCCCcCcEEEEEEcCC-CCCcEEEEccCCceEEEEccC---------------------------------Ccchh
Confidence 44433333677778888543 247799999999999999999 66777
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-CEEEEEeCCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDC 328 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg 328 (1088)
..+.||.+.++.++++|||..+++|+.||.+.+||++.++. ....+|...|.+++|+| .+.+.+..+.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-----------lysl~a~~~v~sl~fspnrywL~~at~~ 254 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-----------LYSLEAFDIVNSLCFSPNRYWLCAATAT 254 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-----------eEeccCCCeEeeEEecCCceeEeeccCC
Confidence 88899999999999999999999999999999999999754 25678889999999995 5666777778
Q ss_pred cEEEEcC-CCceeEEEcc----c----CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 329 TCRVWGS-DGKQLKMIKE----H----IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~----h----~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|+|||+ .+..+..++. . ......+++|++||..|+.|-.|+.|++|.+.
T Consensus 255 sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 255 SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999 5555544432 1 11124578899999999999999999999873
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=245.57 Aligned_cols=295 Identities=19% Similarity=0.321 Sum_probs=235.7
Q ss_pred cceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCC---CceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISN---SSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~---~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
+..++.+.+|.++|+.++|+| . |..|||||.|+.||+|+... -.+...+.......+.++++ +|.+.+||
T Consensus 4 l~~~~~~~gh~~r~W~~awhp---~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La 77 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHP---GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLA 77 (312)
T ss_pred ceeEEeecCCCCcEEEEEecc---CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEE
Confidence 456788899999999999999 5 78999999999999999985 33444444444445666665 78999999
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
+++.|.++.||.-. ....+.+..+.||+..|.+++|+++|.+||+|+.|
T Consensus 78 ~aSFD~t~~Iw~k~-------------------------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 78 SASFDATVVIWKKE-------------------------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRD 126 (312)
T ss_pred EeeccceEEEeecC-------------------------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence 99999999999865 11567889999999999999999999999999999
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcCC-C---ceeEEEcccCCCCe
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-G---KQLKMIKEHIGRGI 351 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~~-~---~~~~~~~~h~~~~V 351 (1088)
++|.||.+..... .+++. .+.+|...|-.+.|+| .+|++++.|.+|++|+.. + .+.+++.+|.. .|
T Consensus 127 KSVWiWe~deddE-----fec~a--VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TV 198 (312)
T KOG0645|consen 127 KSVWIWEIDEDDE-----FECIA--VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TV 198 (312)
T ss_pred CeEEEEEecCCCc-----EEEEe--eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eE
Confidence 9999999986543 46665 8999999999999996 899999999999999973 3 57889999998 79
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC
Q 001391 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 431 (1088)
|+++|++.|..|++++.|++++||.+.... ...|...+..+++. ++
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------------------------------~~~~sr~~Y~v~W~-~~ 244 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------------------------------SGMHSRALYDVPWD-NG 244 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccCc---------------------------------chhcccceEeeeec-cc
Confidence 999999999999999999999999863210 01123456777777 67
Q ss_pred eEEEEecCCeEEEEEeccC-CcceeEEee--eecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 432 TLYIATNHGYLYHTKLCDM-DSVNWNKIL--QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 432 ~ll~~t~~g~i~~~~~~~~-~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
.+..++.++.|..++..+. ....|..+. .+.++..|.++...+. ..++|++|+.||.+++|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-------~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-------VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-------CCCceeecCCCceEEEEEec
Confidence 7777888888876655432 122343332 2334567888887663 25899999999999999874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=257.56 Aligned_cols=280 Identities=19% Similarity=0.313 Sum_probs=240.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.|.|.||++. |. ..++++|+ |++|+|||+.+|++..++.+|-. .|.++++|+. . .+++.++
T Consensus 150 HlgWVr~vavd--P~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~r-------H---pYlFs~g 212 (460)
T KOG0285|consen 150 HLGWVRSVAVD--PG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKR-------H---PYLFSAG 212 (460)
T ss_pred ccceEEEEeeC--CC----ceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeeccc-------C---ceEEEec
Confidence 67999999999 97 89999999 79999999999999999999777 6999999943 2 1566666
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.|+-||++. .+.++.+.||-..|.|++.+| .-+.|+||+.|.++|+||+++...+..+.
T Consensus 213 edk~VKCwDLe~---------------nkvIR~YhGHlS~V~~L~lhP---Tldvl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 213 EDKQVKCWDLEY---------------NKVIRHYHGHLSGVYCLDLHP---TLDVLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred CCCeeEEEechh---------------hhhHHHhccccceeEEEeccc---cceeEEecCCcceEEEeeecccceEEEec
Confidence 699999999995 578999999999999999999 88999999999999999999999999998
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|...+ .++.+ .+-.-.+++|+.|++|++||+. .++....+..
T Consensus 275 GH~~~V-~~V~~---~~~dpqvit~S~D~tvrlWDl~---------------------------------agkt~~tlt~ 317 (460)
T KOG0285|consen 275 GHTNPV-ASVMC---QPTDPQVITGSHDSTVRLWDLR---------------------------------AGKTMITLTH 317 (460)
T ss_pred CCCCcc-eeEEe---ecCCCceEEecCCceEEEeeec---------------------------------cCceeEeeec
Confidence 887653 34443 3445689999999999999999 7788888999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vW 333 (1088)
|+..|.+++.+|....+++++.| .|+-|++..+. .+. .+.+|..-|.+++.. +.++++|+.+|.+..|
T Consensus 318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g~--------f~~--nlsgh~~iintl~~nsD~v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE--------FLQ--NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFW 386 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc-cceeccCCccc--------hhh--ccccccceeeeeeeccCceEEEcCCceEEEEE
Confidence 99999999999999999999998 59999998863 333 688999999999987 8999999999999999
Q ss_pred cC-CCceeEEEc---c----cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 334 GS-DGKQLKMIK---E----HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 334 d~-~~~~~~~~~---~----h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
|. +|...+..+ . ....+|++.+|...|..|+||..|.+|++|.-+
T Consensus 387 dwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 387 DWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 98 554333321 1 112369999999999999999999999999864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=260.36 Aligned_cols=280 Identities=22% Similarity=0.349 Sum_probs=246.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|..+|+.+-|. |+ ..++++++ |.+|++||..+|++.+.+++|.. .|..|.|+ ..|+ .++.++
T Consensus 107 ~r~~vt~v~~h--p~----~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-sv~di~~~-------a~Gk---~l~tcS 169 (406)
T KOG0295|consen 107 HRSSVTRVIFH--PS----EALVVSASEDATIKVFDTETGELERSLRGHTD-SVFDISFD-------ASGK---YLATCS 169 (406)
T ss_pred cccceeeeeec--cC----ceEEEEecCCceEEEEEccchhhhhhhhcccc-ceeEEEEe-------cCcc---EEEecC
Confidence 56789999999 98 77777776 79999999999999999999888 59999999 6663 444445
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|=.+++||... ..++++.+.+|...|.++.|.| .|.+|++++.|++|+.|++.++.++.++.
T Consensus 170 sDl~~~LWd~~~--------------~~~c~ks~~gh~h~vS~V~f~P---~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 170 SDLSAKLWDFDT--------------FFRCIKSLIGHEHGVSSVFFLP---LGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred CccchhheeHHH--------------HHHHHHHhcCcccceeeEEEEe---cCCeeeecccccceeEEecccceeEEecc
Confidence 577799999984 2567888899999999999999 89999999999999999999999999998
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|.. .+..++. ..||.++|+++.|.++++|-+. +..+...+++
T Consensus 233 ~h~e-wvr~v~v---~~DGti~As~s~dqtl~vW~~~---------------------------------t~~~k~~lR~ 275 (406)
T KOG0295|consen 233 GHSE-WVRMVRV---NQDGTIIASCSNDQTLRVWVVA---------------------------------TKQCKAELRE 275 (406)
T ss_pred CchH-hEEEEEe---cCCeeEEEecCCCceEEEEEec---------------------------------cchhhhhhhc
Confidence 8765 3333443 6789999999999999999998 6777788899
Q ss_pred CCCCEEEEEEcCC---------------CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 255 HEGSIFRIEWSSC---------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 255 h~~~V~~v~~sp~---------------g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
|+-+|-+++|.|. ++++.+++.|++|++||+.++. ++ +++.+|...|..++|+
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~--------cL--~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM--------CL--FTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe--------EE--EEEecccceeeeeEEcCC
Confidence 9999999999762 2589999999999999999964 44 4899999999999999
Q ss_pred CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|.+|+++..|+++++||+ +++++..+..|.. -|++++|+.+..+++||+-|.++++|.-
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h-fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLEAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccCCCcc-eeEEEecCCCCceEEeccccceeeeeec
Confidence 899999999999999999 8899999999988 6999999999999999999999999963
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=260.93 Aligned_cols=240 Identities=14% Similarity=0.244 Sum_probs=209.2
Q ss_pred CcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 65 ~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
..+|.+++++|. .. -.|++--+|.|.||+.++ ..+++.+.-..-+|.+..|-+
T Consensus 13 SdRVKsVd~HPt------eP----w~la~LynG~V~IWnyet---------------qtmVksfeV~~~PvRa~kfia-- 65 (794)
T KOG0276|consen 13 SDRVKSVDFHPT------EP----WILAALYNGDVQIWNYET---------------QTMVKSFEVSEVPVRAAKFIA-- 65 (794)
T ss_pred CCceeeeecCCC------Cc----eEEEeeecCeeEEEeccc---------------ceeeeeeeecccchhhheeee--
Confidence 348999999953 22 566666799999999985 457778877888999999998
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
-.+.+++|+.|..||||+..+++.+..++.|.. .+.+++.| |...++++++.|-.|++||++
T Consensus 66 -RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-yIR~iavH---Pt~P~vLtsSDDm~iKlW~we------------- 127 (794)
T KOG0276|consen 66 -RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-YIRSIAVH---PTLPYVLTSSDDMTIKLWDWE------------- 127 (794)
T ss_pred -ccceEEEecCCceEEEEecccceeeEEeecccc-ceeeeeec---CCCCeEEecCCccEEEEeecc-------------
Confidence 889999999999999999999999999987764 35566665 556699999999999999998
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
..-.+.+.|.||+.-|.+++|.| |...++|+|-|++|++|.+..... . ++
T Consensus 128 -------------------~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~--------n--fT 178 (794)
T KOG0276|consen 128 -------------------NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP--------N--FT 178 (794)
T ss_pred -------------------CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC--------c--ee
Confidence 15567889999999999999999 567899999999999999987432 2 48
Q ss_pred eeccCcceEEEEEC-C---CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 304 LYGHNARVWDCCLT-D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~-~---~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+|...|.|+.|- + .+++||+.|.+++|||. +..+++++.+|.. .|..+.|+|.-.+++||+.||++|||+-.
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCc
Confidence 99999999999997 2 59999999999999999 7889999999998 69999999999999999999999999875
Q ss_pred C
Q 001391 379 A 379 (1088)
Q Consensus 379 ~ 379 (1088)
+
T Consensus 258 T 258 (794)
T KOG0276|consen 258 T 258 (794)
T ss_pred c
Confidence 4
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-27 Score=261.38 Aligned_cols=582 Identities=15% Similarity=0.198 Sum_probs=369.9
Q ss_pred CCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCC---EEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcce
Q 001391 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP---FLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRL 68 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~---~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V 68 (1088)
....|.+||..+.. |.++|+|+.+. |+ .. ++++|. |+.|.+|.++... ++.++++ + .+
T Consensus 32 a~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l--~~----s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~--~~ 102 (764)
T KOG1063|consen 32 AGPAIAVADPEKILIVTTLDGHVARVNCVHWL--PT----SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-H--CK 102 (764)
T ss_pred CCceEEEeCcccceeEEeccCCccceEEEEEc--cc----ccccceEEEccCCCcEEEEEEeehheEEEEeecC-c--ce
Confidence 44568899987763 78999999999 88 33 677776 8999999998543 3444554 2 34
Q ss_pred EEEEecccccccCCCccceeeEEE-EECCCEEEEEEeccCC-----C---CCCC-------CCCc---------------
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVA-LFGEKRVKLFELNFEL-----S---PNSQ-------YQPE--------------- 117 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la-~~gd~~v~iw~l~~~~-----~---~~~~-------~~~~--------------- 117 (1088)
.++++. ... .... .+.|+.+.+|+.+.++ . .... ..++
T Consensus 103 ~~~cv~-------a~~----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v 171 (764)
T KOG1063|consen 103 ECVCVV-------ARS----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVV 171 (764)
T ss_pred eEEEEE-------eee----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEE
Confidence 555554 111 2222 2568999999984322 0 0000 0000
Q ss_pred -----cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---------------------EE
Q 001391 118 -----TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---------------------IL 171 (1088)
Q Consensus 118 -----~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~---------------------~~ 171 (1088)
..-.++.+..+.||.+||.+++|.....+.-+|||+|.|..||||.+.-+.. ..
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 0114678889999999999999987443445899999999999999853320 00
Q ss_pred Eec---------cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 172 EVH---------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 172 ~~~---------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
++. .++..-++++.+ .|.+..|.+++.|.++.+|...+.. -+|.
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W---~p~~~~LLSASaDksmiiW~pd~~t-----------------------GiWv- 304 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWW---HPEGLDLLSASADKSMIIWKPDENT-----------------------GIWV- 304 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEE---ccchhhheecccCcceEEEecCCcc-----------------------ceEE-
Confidence 111 122334566655 4678899999999999999987210 0111
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCE
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~ 320 (1088)
..-.+..+.|..+.-++..|+|++..+++-+..|-.++|...... .........||...|.+++|+ |.+
T Consensus 305 --~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------~w~~~~~iSGH~~~V~dv~W~psGef 375 (764)
T KOG1063|consen 305 --DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------FWTQEPVISGHVDGVKDVDWDPSGEF 375 (764)
T ss_pred --EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc-------ceeeccccccccccceeeeecCCCCE
Confidence 112333344555668899999999999999999999999933321 122112778999999999998 899
Q ss_pred EEEEeCCCcEEEEcCCCce-----eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCC--------cccC
Q 001391 321 IITAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG--------SLES 387 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~~~~~-----~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~--------~~~~ 387 (1088)
|++.+.|.+-|+|-.-|+. +..-+-|.. -++++++-+....+++|.....+|+|+....... .+.+
T Consensus 376 lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy-Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~ 454 (764)
T KOG1063|consen 376 LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY-DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKG 454 (764)
T ss_pred EEEeccccceeeecccccccceeeecccccccc-cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccC
Confidence 9999999999999874322 223344555 4899999886667899999999999987432111 0100
Q ss_pred C--------ccccccCCCcce-------------EE---------eeeCCCc---------cceeeccCCCCceEEEEec
Q 001391 388 H--------PEAKEFNGRTEI-------------FS---------IKIPNFS---------EQIRLTDSKSEYVRCLHLT 428 (1088)
Q Consensus 388 ~--------~~~~~~~~~~~~-------------~~---------~~~~~~~---------~~~~~~~~~~~~V~~l~~s 428 (1088)
. ....+.+..... .. +..|..+ ..+..+-+|+..|.+++.+
T Consensus 455 ~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s 534 (764)
T KOG1063|consen 455 SDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS 534 (764)
T ss_pred chhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec
Confidence 0 001111100000 00 0001111 1122234788899999999
Q ss_pred cCCeEEEEecCCe---EEEEEeccCCcceeEEe--eeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 429 SEDTLYIATNHGY---LYHTKLCDMDSVNWNKI--LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 429 ~~~~ll~~t~~g~---i~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
|++.+++++.... --.+.+|+..+ |.++ +.+| .-.|.-+.+++ ++.+|++.+.|.++.+|+...
T Consensus 535 ~~gnliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~H-sLTVT~l~FSp--------dg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 535 PTGNLIASACKSSLKEHAVIRLWNTAN--WLQVQELEGH-SLTVTRLAFSP--------DGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred CCCCEEeehhhhCCccceEEEEEeccc--hhhhheeccc-ceEEEEEEECC--------CCcEEEEeecCceEEeeeeec
Confidence 9999998865443 11223566544 4333 3333 45677777744 569999999999999999854
Q ss_pred CCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceE
Q 001391 504 DVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARI 583 (1088)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~I 583 (1088)
.. .. .+.+.....+.+-+.. +.++|++.+++|++.|.+|++|..+......-. .+. ...++..|
T Consensus 604 ~~-~~--e~~fa~~k~HtRIIWd--csW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~------~~a-----~~~~~~aV 667 (764)
T KOG1063|consen 604 DI-KD--EFRFACLKAHTRIIWD--CSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS------RFA-----CLKFSLAV 667 (764)
T ss_pred cc-ch--hhhhccccccceEEEE--cccCcccceeEEecCCceEEEEeccCchhhhhh------hhc-----hhccCCce
Confidence 32 22 2223233333333433 357899999999999999999998865311100 011 23578889
Q ss_pred EEEEeee-----CCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEecc-------CC
Q 001391 584 MCLDASF-----EDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SN 651 (1088)
Q Consensus 584 t~l~~sp-----dg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~-------~~ 651 (1088)
|++++.| .+.++++|-+.|.|.+|......... +...+.....+....+|. +.|+.+.|.+.. .+
T Consensus 668 TAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--~aV~rl~w~p~~~~~~~~~~~ 744 (764)
T KOG1063|consen 668 TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV-TVGTFNLDTRLCATIGPD--SAVNRLLWRPTCSDDWVEDKE 744 (764)
T ss_pred eeEEeeccccccccceEEEEecccEEEEEecccccccc-cceeeeeccccccccChH--HhhheeEeccccccccccccc
Confidence 9999986 34489999999999999977432100 011111111111112233 579999998653 12
Q ss_pred ceEEEEecCCCeEEEEEee
Q 001391 652 QTEIRSTGGDGCICYLEYD 670 (1088)
Q Consensus 652 ~~~l~t~g~Dg~i~iw~~~ 670 (1088)
...|+++|.|-++|+++++
T Consensus 745 ~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 745 WLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeEEeeecccceeEEeecc
Confidence 3568999999999999874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=243.84 Aligned_cols=294 Identities=14% Similarity=0.219 Sum_probs=238.2
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
..+..+.|+||...|.++.|++ |.++|++++.||.+.|||.-+......+..+.. -+..++| +|.+..+|.|+
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-WVMtCA~---sPSg~~VAcGG 116 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-WVMTCAY---SPSGNFVACGG 116 (343)
T ss_pred eeeeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCce-eEEEEEE---CCCCCeEEecC
Confidence 3556688999999999999999 999999999999999999998887777765543 3344454 79999999999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
-|+...||++.+....+ ..+..+.+.+|++-+.+..|.+| ..|+|+|.|.+.
T Consensus 117 LdN~Csiy~ls~~d~~g---------------------------~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TC 168 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEG---------------------------NVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTC 168 (343)
T ss_pred cCceeEEEecccccccc---------------------------cceeeeeecCccceeEEEEEcCC-CceEecCCCceE
Confidence 99999999998332211 23455678999999999999985 568999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
-+||+++++ .+. .+.||.+.|.++.+. ++.+++|+-|++.++||+ .+...++|.+|..+ |.++.|
T Consensus 169 alWDie~g~--------~~~--~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD-INsv~f 237 (343)
T KOG0286|consen 169 ALWDIETGQ--------QTQ--VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD-INSVRF 237 (343)
T ss_pred EEEEcccce--------EEE--EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc-cceEEE
Confidence 999999963 343 788999999999998 589999999999999999 88999999999995 999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE
Q 001391 357 DSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1088)
Q Consensus 357 ~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~ 435 (1088)
.|+|.-++||+.|++.++||++. +.+..+. -+....+|++++|+..|+++.
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys----------------------------~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRADQELAVYS----------------------------HDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCCcEEeeec----------------------------cCcccCCceeEEEcccccEEE
Confidence 99999999999999999999964 2222211 112234799999999998877
Q ss_pred Ee-cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 436 AT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 436 ~t-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
++ .+.... +|+.-..+-..++.+| ++.|.|+.+.++ +--+++|+-|..++||.
T Consensus 290 agy~d~~c~---vWDtlk~e~vg~L~GH-eNRvScl~~s~D--------G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 290 AGYDDFTCN---VWDTLKGERVGVLAGH-ENRVSCLGVSPD--------GMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeecCCcee---EeeccccceEEEeecc-CCeeEEEEECCC--------CcEEEecchhHheeecC
Confidence 74 455566 5554444433455666 678999999554 47899999999999993
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=255.97 Aligned_cols=296 Identities=18% Similarity=0.286 Sum_probs=243.4
Q ss_pred cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 118 ~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
=+...++.+.+.+|.+||.|+++.| .++.++||+.|++|+|||+.++++..++.++... +..+++ ++...+++
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-vr~vav---S~rHpYlF 209 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-VRGVAV---SKRHPYLF 209 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhhe-eeeeee---cccCceEE
Confidence 3445788899999999999999999 8999999999999999999999999999877542 334444 56677999
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
+++.|+.|+.||++ ..+.++...||-..|.+++.+|.-..|+||+.|
T Consensus 210 s~gedk~VKCwDLe---------------------------------~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD 256 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLE---------------------------------YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD 256 (460)
T ss_pred EecCCCeeEEEech---------------------------------hhhhHHHhccccceeEEEeccccceeEEecCCc
Confidence 99999999999999 777888889999999999999999999999999
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEE
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRC 354 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l 354 (1088)
.++|+||+++. ..+. .+.||..+|.++.+. +..+++|+.|++|++||+ .|+...++..|.. .|.++
T Consensus 257 st~RvWDiRtr--------~~V~--~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral 325 (460)
T KOG0285|consen 257 STIRVWDIRTR--------ASVH--VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRAL 325 (460)
T ss_pred ceEEEeeeccc--------ceEE--EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEE
Confidence 99999999995 3343 899999999999998 789999999999999999 8999999988887 79999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeE
Q 001391 355 LYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL 433 (1088)
Q Consensus 355 ~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~l 433 (1088)
+.+|....+++++.|. |+-|++ .+..++.+ .+|...|.+++.+.|+.+
T Consensus 326 ~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl------------------------------sgh~~iintl~~nsD~v~ 374 (460)
T KOG0285|consen 326 CLHPKENLFASASPDN-IKQWKLPEGEFLQNL------------------------------SGHNAIINTLSVNSDGVL 374 (460)
T ss_pred ecCCchhhhhccCCcc-ceeccCCccchhhcc------------------------------ccccceeeeeeeccCceE
Confidence 9999999999999884 899998 33333322 344567899999999999
Q ss_pred EEEecCCeEEEEEeccCCcceeE--Eeeeec--CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 434 YIATNHGYLYHTKLCDMDSVNWN--KILQVS--EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 434 l~~t~~g~i~~~~~~~~~~~~~~--~~~~~~--~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
++++.+|.+..|+..+....+.. .+..+. .+..|++..+...+ ..|++|..|.+|++|.-+.
T Consensus 375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg--------~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG--------SRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC--------ceEEeccCCcceEEEeccc
Confidence 99999999987765443332211 111222 23456666665543 7899999999999997654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=265.21 Aligned_cols=255 Identities=19% Similarity=0.335 Sum_probs=220.1
Q ss_pred CCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEe
Q 001391 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~ 73 (1088)
-|++|.|||..+.. |.|.|.|+.|. .+++++|+ |.+|+|||+.+|+++.++-+|-. .|.++.|
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------~rviisGSSDsTvrvWDv~tge~l~tlihHce-aVLhlrf 285 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE-AVLHLRF 285 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCCCcEEeeecc--------ceEEEecCCCceEEEEeccCCchhhHHhhhcc-eeEEEEE
Confidence 58999999988876 88999999998 68999998 79999999999999999987666 6999999
Q ss_pred cccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
+ +| ..+.++.|+++++||+..+. ...+.+.+.||...|+.+.| +.++++++
T Consensus 286 ~--------ng----~mvtcSkDrsiaVWdm~sps------------~it~rrVLvGHrAaVNvVdf-----d~kyIVsA 336 (499)
T KOG0281|consen 286 S--------NG----YMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDF-----DDKYIVSA 336 (499)
T ss_pred e--------CC----EEEEecCCceeEEEeccCch------------HHHHHHHHhhhhhheeeecc-----ccceEEEe
Confidence 8 33 77888889999999998644 35778889999999999999 55799999
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
+.|.+|++|++.+++.+.++.+|.+.+. ++. -.+.++++|+.|++|++||+.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIA-ClQ-----Yr~rlvVSGSSDntIRlwdi~---------------------- 388 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIA-CLQ-----YRDRLVVSGSSDNTIRLWDIE---------------------- 388 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccce-ehh-----ccCeEEEecCCCceEEEEecc----------------------
Confidence 9999999999999999999998887643 333 368899999999999999999
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC-CceeeeceeeeccCcceE
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-SIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~i~~~~~~~h~~~I~ 312 (1088)
.+.++..+.||+.-|.++.| |.+.+++|+.||+|++||+......... ..-++ ..+..|+++|.
T Consensus 389 -----------~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl--~~lv~hsgRVF 453 (499)
T KOG0281|consen 389 -----------CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCL--RTLVEHSGRVF 453 (499)
T ss_pred -----------ccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHH--HhhhhccceeE
Confidence 78899999999999999999 5678999999999999999886431111 11123 36778999999
Q ss_pred EEEECCCEEEEEeCCCcEEEEcC-CC
Q 001391 313 DCCLTDSFIITAGEDCTCRVWGS-DG 337 (1088)
Q Consensus 313 ~v~~~~~~l~sg~~Dg~i~vWd~-~~ 337 (1088)
.+.|....+++++.|.+|.|||+ ++
T Consensus 454 rLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 454 RLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEeecceEEEeccCCCeEEEEEcCCC
Confidence 99999999999999999999999 44
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-26 Score=258.63 Aligned_cols=467 Identities=15% Similarity=0.187 Sum_probs=301.9
Q ss_pred CCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 33 SSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 33 ~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
++.-++.++.|...++||+..-.++..-.... .+|++++-. . ..+.++..+.|.+|.-..
T Consensus 45 ~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp-~~I~alas~-------~------~~vy~A~g~~i~~~~rgk------ 104 (910)
T KOG1539|consen 45 GSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLP-DKITALASD-------K------DYVYVASGNKIYAYARGK------ 104 (910)
T ss_pred CceEEEEEecCceEEEEeccceEEEEecCCCC-CceEEEEec-------C------ceEEEecCcEEEEEEccc------
Confidence 33556777779999999999877766554333 479999876 3 234444456777776431
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceE---EEeccCCceeEEEEeeec
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SII---LEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~---~~~~~~~~~~~~s~~~~~ 188 (1088)
.....+.+|...|.-+.. =|.++..+..++.+.+|+.... +.. ..+...+...+.++. |
T Consensus 105 ----------~i~~~~~~~~a~v~~l~~-----fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H- 167 (910)
T KOG1539|consen 105 ----------HIRHTTLLHGAKVHLLLP-----FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H- 167 (910)
T ss_pred ----------eEEEEeccccceEEEEee-----ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c-
Confidence 234555677777776654 5678888889999999999874 211 111111222132321 1
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
.+.--+.|+.|+..|.+++|+++ +++.+++++++...|+++.=+|--
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvr---------------------------------t~K~v~~f~~~~s~IT~ieqsPaL 214 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVR---------------------------------TGKVVYTFQEFFSRITAIEQSPAL 214 (910)
T ss_pred chhheeeEEEeecCCcEEEEEec---------------------------------cCcEEEEecccccceeEeccCCcc
Confidence 12223578999999999999999 889999999999999999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-CcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeE-EE
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLK-MI 343 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~-~~ 343 (1088)
..++.|..+|+|.++|+..++. + ....| .++|+++.|. ..++++|+..|.+.+||++++.+. .+
T Consensus 215 DVVaiG~~~G~ViifNlK~dki--------l---~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 215 DVVAIGLENGTVIIFNLKFDKI--------L---MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred eEEEEeccCceEEEEEcccCcE--------E---EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence 9999999999999999998643 2 33344 5899999998 468899999999999999665543 33
Q ss_pred -cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce
Q 001391 344 -KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (1088)
Q Consensus 344 -~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 422 (1088)
..|.+ +|....|.|....++|++.|+.+++|=.+.. ...+..++.-.+|..+.
T Consensus 284 ~nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~-------------------------dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 284 RNAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSG-------------------------DGVPRLLRSRGGHSAPP 337 (910)
T ss_pred eccccC-CcccceecCCCceEeeccCCCceeEEEeeCC-------------------------CCcchheeeccCCCCCc
Confidence 47877 7999999999999999999999999966421 11122334445677888
Q ss_pred EEEEecc-CCeEEEE-ecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 423 RCLHLTS-EDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 423 ~~l~~s~-~~~ll~~-t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
.|+.|.. ++..+.. ..++.+..+.+......+ ++.+.+. -...+.+.+..
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~--~l~~~~~--------------------------~~~~kk~~~~~ 389 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ--ELGQLHN--------------------------KKRAKKVNVFS 389 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhH--hhccccc--------------------------ccccccccccc
Confidence 8999874 5554444 444444432221111000 0100000 00001122211
Q ss_pred EcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceee-eeeecccc
Q 001391 501 VVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL-VAEFSSCF 579 (1088)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l-~~~~~~~h 579 (1088)
...-+..+...+.+.+..+ ....+.+++.-.+...+.|+...... +.+ .+ +..|. ..
T Consensus 390 ~~~~k~p~i~~fa~~~~RE------------~~W~Nv~~~h~~~~~~~tW~~~n~~~-G~~--------~L~~~~~~-~~ 447 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFENARE------------KEWDNVITAHKGKRSAYTWNFRNKTS-GRH--------VLDPKRFK-KD 447 (910)
T ss_pred hhhhcCCcceeeecccchh------------hhhcceeEEecCcceEEEEeccCccc-ccE--------EecCcccc-cc
Confidence 1111111111111111100 01123444445567788898875421 111 11 11222 24
Q ss_pred CceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceee-cccccccceeEEEEEeccCCceEEEEe
Q 001391 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF-KGAHGISTVSTLSVAKLRSNQTEIRST 658 (1088)
Q Consensus 580 ~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~-~g~hg~~~Vtsv~~~~~~~~~~~l~t~ 658 (1088)
...+++++.++-|++.+.|+..|+|-+|++..+.. ...+. .-.|+ ..|+.|+.. .-+..++|+
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------------r~sf~~~~ah~-~~V~gla~D---~~n~~~vsa 511 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------------RKSFGDSPAHK-GEVTGLAVD---GTNRLLVSA 511 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCee------------ecccccCcccc-CceeEEEec---CCCceEEEc
Confidence 57799999999999999999999999999987532 11111 11454 689999887 456789999
Q ss_pred cCCCeEEEEEeecC
Q 001391 659 GGDGCICYLEYDKD 672 (1088)
Q Consensus 659 g~Dg~i~iw~~~~~ 672 (1088)
|.||.+++|+....
T Consensus 512 ~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 512 GADGILKFWDFKKK 525 (910)
T ss_pred cCcceEEEEecCCc
Confidence 99999999998764
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-26 Score=255.68 Aligned_cols=524 Identities=12% Similarity=0.181 Sum_probs=363.0
Q ss_pred CCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC-eeEEEEeeeCCcceEEEEec
Q 001391 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 3 d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~s 74 (1088)
+++.+++|..+.+ +...|+||+-. +.++.++++..|.+|- -| ...+.+..|. ..|+-+..-
T Consensus 55 gksfqvYd~~kl~ll~vs~~lp~~I~alas~--------~~~vy~A~g~~i~~~~--rgk~i~~~~~~~~-a~v~~l~~f 123 (910)
T KOG1539|consen 55 GKSFQVYDVNKLNLLFVSKPLPDKITALASD--------KDYVYVASGNKIYAYA--RGKHIRHTTLLHG-AKVHLLLPF 123 (910)
T ss_pred CceEEEEeccceEEEEecCCCCCceEEEEec--------CceEEEecCcEEEEEE--ccceEEEEecccc-ceEEEEeee
Confidence 5677888877665 45679999977 5689999998999987 34 4445555555 568877754
Q ss_pred ccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+ .++++-.++.+.||+...... +.. .+ ...++.-.+.|+++. +| +.--+.++.|+
T Consensus 124 -------Ge-----~lia~d~~~~l~vw~~s~~~~-e~~--------l~-~~~~~~~~~~Ital~-HP-~TYLNKIvvGs 179 (910)
T KOG1539|consen 124 -------GE-----HLIAVDISNILFVWKTSSIQE-ELY--------LQ-STFLKVEGDFITALL-HP-STYLNKIVVGS 179 (910)
T ss_pred -------cc-----eEEEEEccCcEEEEEeccccc-ccc--------cc-ceeeeccCCceeeEe-cc-hhheeeEEEee
Confidence 22 788888899999999886310 000 11 222223333477764 45 11235688999
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
.+|.+++|++++++.+.+++... ..+.++. .+|--..+|.|..+|+|.+++++
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ie---qsPaLDVVaiG~~~G~ViifNlK----------------------- 232 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFF-SRITAIE---QSPALDVVAIGLENGTVIIFNLK----------------------- 232 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccc-cceeEec---cCCcceEEEEeccCceEEEEEcc-----------------------
Confidence 99999999999999999998766 4444443 35667789999999999999999
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~ 313 (1088)
..+.+..|+...+.|++++|..||.. +++++..|.+-+||++..+. +. .....|.+.|..
T Consensus 233 ----------~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl--------~~-v~~nah~~sv~~ 293 (910)
T KOG1539|consen 233 ----------FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL--------IN-VTRNAHYGSVTG 293 (910)
T ss_pred ----------cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee--------ee-eeeccccCCccc
Confidence 77888888866799999999999975 56666779999999998643 32 245578888888
Q ss_pred EEEC--CCEEEEEeCCCcEEEEcC---CC--ceeEEEcccCCCCeEEEEEc-CCCCEEEEEeCCCCEEEEEcCCCCCCcc
Q 001391 314 CCLT--DSFIITAGEDCTCRVWGS---DG--KQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGFDSAIKVHQFQAFLPGSL 385 (1088)
Q Consensus 314 v~~~--~~~l~sg~~Dg~i~vWd~---~~--~~~~~~~~h~~~~V~~l~~~-~dg~~l~tg~~Dg~I~iwd~~~~~~~~~ 385 (1088)
..|. ...+++++.|..+++|=. +| +.++.-.+|.. |-.++.|. .+|..+.+++.|++++.+++.......-
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~ 372 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE 372 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence 8887 478999999999998876 33 55667788988 78999986 7889999999999999998732111000
Q ss_pred cCCccccccCCCcceEEeeeCCCcccee---eccCCCCceEEEEecc------CCeEEEEecCCeEEEEEeccCCcceeE
Q 001391 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIR---LTDSKSEYVRCLHLTS------EDTLYIATNHGYLYHTKLCDMDSVNWN 456 (1088)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~V~~l~~s~------~~~ll~~t~~g~i~~~~~~~~~~~~~~ 456 (1088)
.++. ..+...+... ....+-.+|..+++.. ++.+.+--++-..+.|+..+...++|.
T Consensus 373 l~~~--------------~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 373 LGQL--------------HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hccc--------------ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 0000 0000000000 0001112344444433 233444445556777777666666652
Q ss_pred Eeeeec----CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeec
Q 001391 457 KILQVS----EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKS 532 (1088)
Q Consensus 457 ~~~~~~----~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 532 (1088)
+ ... ....+.++++.. .+++.+.|...|.|.+|++..+....... -...+.+.+.+ .+..
T Consensus 439 -L-~~~~~~~~~~~~~av~vs~--------CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~g--la~D 502 (910)
T KOG1539|consen 439 -L-DPKRFKKDDINATAVCVSF--------CGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTG--LAVD 502 (910)
T ss_pred -e-cCccccccCcceEEEEEec--------cCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeE--EEec
Confidence 1 211 235566666644 45999999999999999998875443211 01223333444 2334
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 533 ~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
.-++.+++++.+|.++.|+..... +.+... -...++++.+.....++|++..|-.|.++|..+.
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~--------------l~~~l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKV--------------LKKSLR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcc--------------eeeeec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 456789999999999999988432 222322 2445888888888999999999999999998753
Q ss_pred cccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecC
Q 001391 613 LLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
++ ...|.||. +.||.++|+ +|++.|++++.|++||+||+..+
T Consensus 567 -----------kv--vR~f~gh~--nritd~~FS---~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 567 -----------KV--VREFWGHG--NRITDMTFS---PDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred -----------hh--hHHhhccc--cceeeeEeC---CCCcEEEEeecCCcEEEEeccCc
Confidence 21 33456565 589999999 88999999999999999999765
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=245.79 Aligned_cols=340 Identities=17% Similarity=0.219 Sum_probs=263.2
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
-+..+..|++.|++++.+| +.+++||||.|..-.+|++.++.....+.+|..++ .++.| +.++.+||+|+.+|
T Consensus 56 S~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSV-t~~~F---shdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSV-TCCSF---SHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCce-EEEEE---ccCceEEEecCCCc
Confidence 4567889999999999999 99999999999999999999999998888887653 34444 77899999999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
.|+||+.. ++.....+.+--..|--+.|+|.+..|+.|+.||.+.+|
T Consensus 129 ~v~v~~~s---------------------------------tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 129 KVLVFKVS---------------------------------TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred cEEEEEcc---------------------------------cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence 99999998 555556665666788999999999999999999999999
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
.+.++. ..+ .+.||+.++++-.|. |..++++..||+|++|+. +++++..+..-.+....++.++..+
T Consensus 176 ~ip~~~--------~~k--v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 176 QIPSQA--------LCK--VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred ECCCcc--------eee--EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence 998842 222 889999999999998 789999999999999999 8999998876555578899999999
Q ss_pred CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCC
Q 001391 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g 440 (1088)
..+++|..++.+++-+... |+++...+ +
T Consensus 246 ~~~~~g~~e~~~~~~~~~s---------------------------------------------------gKVv~~~n-~ 273 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGS---------------------------------------------------GKVVNCNN-G 273 (399)
T ss_pred ceeEeccCCccEEEEcccc---------------------------------------------------ceEEEecC-C
Confidence 9999999999888765421 12222211 1
Q ss_pred eEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccc
Q 001391 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGI 520 (1088)
Q Consensus 441 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~ 520 (1088)
..- .+ ...+...+-++...+. +..-.+.|+|+-||+|.|||+....++.+ + .+
T Consensus 274 ~~~-------------~l-~~~~e~~~esve~~~~-----ss~lpL~A~G~vdG~i~iyD~a~~~~R~~------c--~h 326 (399)
T KOG0296|consen 274 TVP-------------EL-KPSQEELDESVESIPS-----SSKLPLAACGSVDGTIAIYDLAASTLRHI------C--EH 326 (399)
T ss_pred CCc-------------cc-cccchhhhhhhhhccc-----ccccchhhcccccceEEEEecccchhhee------c--cC
Confidence 000 00 1111222333333332 23447899999999999999987554321 1 22
Q ss_pred cceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcC
Q 001391 521 ERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (1088)
Q Consensus 521 ~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~ 600 (1088)
+..+.... +-+ ..+|++++.+|.|+.||.+.+. +...+ .+|...|.+++++|+.++++++|.
T Consensus 327 e~~V~~l~--w~~-t~~l~t~c~~g~v~~wDaRtG~--------------l~~~y-~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 327 EDGVTKLK--WLN-TDYLLTACANGKVRQWDARTGQ--------------LKFTY-TGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred CCceEEEE--EcC-cchheeeccCceEEeeeccccc--------------eEEEE-ecCchheeEEEEcCCCcEEEEecC
Confidence 22233322 333 6899999999999999999763 22333 489999999999999999999999
Q ss_pred CCcEEEEeCC
Q 001391 601 RGNLVLFPLL 610 (1088)
Q Consensus 601 dg~I~Iw~~~ 610 (1088)
|++.+||+++
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-26 Score=258.35 Aligned_cols=364 Identities=15% Similarity=0.215 Sum_probs=274.3
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecc
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~ 143 (1088)
+..+|.+++|+| .. .-+|++--.|.|++||... ..++..+..|.++|..++|+|
T Consensus 8 kSsRvKglsFHP-------~r---PwILtslHsG~IQlWDYRM---------------~tli~rFdeHdGpVRgv~FH~- 61 (1202)
T KOG0292|consen 8 KSSRVKGLSFHP-------KR---PWILTSLHSGVIQLWDYRM---------------GTLIDRFDEHDGPVRGVDFHP- 61 (1202)
T ss_pred ccccccceecCC-------CC---CEEEEeecCceeeeehhhh---------------hhHHhhhhccCCccceeeecC-
Confidence 445899999995 32 1555666699999999885 568889999999999999999
Q ss_pred cCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCC
Q 001391 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 144 ~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
.+.++++||.|-.|++|+..+.+++.++.+|.. .+.++.|| +.-.+|++++.|.+|+||+++
T Consensus 62 --~qplFVSGGDDykIkVWnYk~rrclftL~GHlD-YVRt~~FH---heyPWIlSASDDQTIrIWNwq------------ 123 (1202)
T KOG0292|consen 62 --TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD-YVRTVFFH---HEYPWILSASDDQTIRIWNWQ------------ 123 (1202)
T ss_pred --CCCeEEecCCccEEEEEecccceehhhhccccc-eeEEeecc---CCCceEEEccCCCeEEEEecc------------
Confidence 999999999999999999999999999988865 35566665 445699999999999999999
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCC--------
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS-------- 295 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~-------- 295 (1088)
+..++..+.||..-|.|..|+|....++|+|-|.+||+||+...+.....+
T Consensus 124 ---------------------sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 124 ---------------------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred ---------------------CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 889999999999999999999999999999999999999997644321000
Q ss_pred ------------ceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcCCC---ceeEEEcccCCCCeEEEEEcC
Q 001391 296 ------------IEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSDG---KQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 296 ------------~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~~~---~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
...++ +.+.||...|.-++|++ .+|+||+.|+.|++|..+. -.+.+.++|.+ +|.++-|+|
T Consensus 183 ~~~~~~dLfg~~DaVVK-~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp 260 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVK-HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHP 260 (1202)
T ss_pred ccccchhhcCCcCeeee-eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecC
Confidence 12233 58899999999999997 8999999999999999943 34566789998 799999999
Q ss_pred CCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 359 LSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 359 dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
..+++++.|.|++|++||++. ..++++ ....+....++-.|...+++++
T Consensus 261 ~q~lIlSnsEDksirVwDm~kRt~v~tf------------------------------rrendRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 261 HQDLILSNSEDKSIRVWDMTKRTSVQTF------------------------------RRENDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred ccceeEecCCCccEEEEecccccceeee------------------------------eccCCeEEEEEecCCcceeeee
Confidence 999999999999999999954 223322 2233567888899999999999
Q ss_pred cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeee
Q 001391 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~ 517 (1088)
.++.+..+++. .+.+++++. ++.+.... |..|+-+|+.+.+-.+...+.. .
T Consensus 311 HDsGm~VFkle--------------RErpa~~v~------------~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~--~ 361 (1202)
T KOG0292|consen 311 HDSGMIVFKLE--------------RERPAYAVN------------GNGLFYVK-DRFIRSYDLRTQKDTAVASLRR--P 361 (1202)
T ss_pred cCCceEEEEEc--------------ccCceEEEc------------CCEEEEEc-cceEEeeeccccccceeEeccC--C
Confidence 88877654442 234455542 24444444 8899999998744333222221 1
Q ss_pred ccccceeeeEEEeecC-CCeEEEEECC-CCeEEEEecCCC
Q 001391 518 AGIERQLLGTYWCKSL-GHRFIFTADP-KGRLKLWQLCDP 555 (1088)
Q Consensus 518 ~~~~~~~~~~~~~~s~-dg~~L~s~~~-dg~i~vwd~~~~ 555 (1088)
...-....+ ..+.| .+..|++++. .|..-++.+...
T Consensus 362 g~~~~~~~s--msYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 362 GTLWQPPRS--LSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred CcccCCcce--eeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 110111112 23445 4455555544 456667777644
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=275.86 Aligned_cols=261 Identities=17% Similarity=0.302 Sum_probs=218.1
Q ss_pred eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCC---CCCCC--CCC-----c------c
Q 001391 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFEL---SPNSQ--YQP-----E------T 118 (1088)
Q Consensus 56 ~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~---~~~~~--~~~-----~------~ 118 (1088)
+..++.. ....+.|..|+ +|+ .++|+ +.|..|++|.+.... .+... -.+ + +
T Consensus 370 c~YT~~n-t~~~v~ca~fS-------dds----smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 370 CMYTFHN-TYQGVTCAEFS-------DDS----SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEEE-cCCcceeEeec-------CCc----chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcc
Confidence 4445554 34469999999 776 44444 569999999998421 00000 000 0 0
Q ss_pred ccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 119 ~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.........+.||.++|..+.|+| +.++|++++.|++||+|.+.+..++....+|. ..+|.+.| +|.|-++|+
T Consensus 438 ~~~~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~-~PVwdV~F---~P~GyYFat 510 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL-APVWDVQF---APRGYYFAT 510 (707)
T ss_pred ccCCceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCC-cceeeEEe---cCCceEEEe
Confidence 001234456889999999999999 99999999999999999999999998888664 45777776 688999999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
++.|++.++|... ...+++.+.||-..|.|+.|+|+..++++||.|+
T Consensus 511 as~D~tArLWs~d---------------------------------~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~ 557 (707)
T KOG0263|consen 511 ASHDQTARLWSTD---------------------------------HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDR 557 (707)
T ss_pred cCCCceeeeeecc---------------------------------cCCchhhhcccccccceEEECCcccccccCCCCc
Confidence 9999999999998 6778888999999999999999999999999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~ 355 (1088)
+||+||+.++. .++ .+.||.++|.+++|+ |.+|++|++||.|.+||+ .++++..+.+|.+ .|.++.
T Consensus 558 tVRlWDv~~G~--------~VR--iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~Sls 626 (707)
T KOG0263|consen 558 TVRLWDVSTGN--------SVR--IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLS 626 (707)
T ss_pred eEEEEEcCCCc--------EEE--EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEE
Confidence 99999999963 444 789999999999999 799999999999999999 7899999999988 799999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 356 YDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|+.+|..||+||.|.+|++||+..
T Consensus 627 FS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 627 FSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999843
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=255.08 Aligned_cols=336 Identities=17% Similarity=0.211 Sum_probs=258.7
Q ss_pred eeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCc--e--EEEec---------cCCceeEEEEeeecC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSS--I--ILEVH---------SPERCLLYSMKLWGD 189 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~--~--~~~~~---------~~~~~~~~s~~~~~~ 189 (1088)
..+.+. |...|.+.+|+| -.. .+++|+.|-+.++|++.... . ...++ .+...-+.++++
T Consensus 171 ~~kvl~-~~~~V~~~~WnP---~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--- 243 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNP---LRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--- 243 (524)
T ss_pred ceeecc-CCCceEEEecCc---hhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe---
Confidence 344444 999999999999 444 89999999999999997511 1 11111 222344666665
Q ss_pred CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC
Q 001391 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1088)
Q Consensus 190 s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~ 269 (1088)
+.+|..||+|..||.+++|+.. +..+..+..|+++|+++.|+.+|.
T Consensus 244 n~~G~~LatG~~~G~~riw~~~----------------------------------G~l~~tl~~HkgPI~slKWnk~G~ 289 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKD----------------------------------GNLISTLGQHKGPIFSLKWNKKGT 289 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecC----------------------------------chhhhhhhccCCceEEEEEcCCCC
Confidence 6789999999999999999986 566778889999999999999999
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccC
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~ 347 (1088)
+|++++.|+++.+||..++.. .. .+.-|..+-.++.|- +..+++.+.|+.|+|+.+ ...++.++.+|+
T Consensus 290 yilS~~vD~ttilwd~~~g~~--------~q--~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~ 359 (524)
T KOG0273|consen 290 YILSGGVDGTTILWDAHTGTV--------KQ--QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH 359 (524)
T ss_pred EEEeccCCccEEEEeccCceE--------EE--eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc
Confidence 999999999999999988533 22 566677776788887 789999999999999999 678899999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
+ +|.++.|+|.+.+|++++.|++++||+... ..... +..|...|..+.
T Consensus 360 g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~------------------------------l~~Hskei~t~~ 408 (524)
T KOG0273|consen 360 G-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD------------------------------LQAHSKEIYTIK 408 (524)
T ss_pred C-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh------------------------------hhhhccceeeEe
Confidence 9 799999999999999999999999999743 22222 233444556666
Q ss_pred eccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCc
Q 001391 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH 506 (1088)
Q Consensus 427 ~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~ 506 (1088)
|+|.|.. .| . +..+..+++++.|++|++||+..+.+
T Consensus 409 wsp~g~v--------------------~~-----------------n-------~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 409 WSPTGPV--------------------TS-----------------N-------PNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred ecCCCCc--------------------cC-----------------C-------CcCCceEEEeecCCeEEEEEccCCce
Confidence 6664311 00 0 11235789999999999999988765
Q ss_pred CcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEE
Q 001391 507 TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (1088)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l 586 (1088)
... + ..+...+.. .+|+|+|+|+++|+.||.|.+|+++..+ +.+.+ .-...|..+
T Consensus 445 i~~------f-~kH~~pVys--vafS~~g~ylAsGs~dg~V~iws~~~~~--------------l~~s~--~~~~~Ifel 499 (524)
T KOG0273|consen 445 IHT------L-MKHQEPVYS--VAFSPNGRYLASGSLDGCVHIWSTKTGK--------------LVKSY--QGTGGIFEL 499 (524)
T ss_pred eEe------e-ccCCCceEE--EEecCCCcEEEecCCCCeeEeccccchh--------------eeEee--cCCCeEEEE
Confidence 432 1 112222333 5799999999999999999999998653 33333 235669999
Q ss_pred EeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 587 DASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 587 ~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
.|+.+|.+|.....||.+++-|+.
T Consensus 500 ~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 500 CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999998864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=261.69 Aligned_cols=275 Identities=19% Similarity=0.292 Sum_probs=229.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g- 95 (1088)
.+|..|.+. |+ |+.|++|++ |...+|+..+-.--..++.|+. .|.++.|+ +++ ..+++++
T Consensus 97 c~V~~v~Wt--Pe----GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-~Vr~m~ws-------~~g----~wmiSgD~ 158 (464)
T KOG0284|consen 97 CPVNVVRWT--PE----GRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-PVRTMKWS-------HNG----TWMISGDK 158 (464)
T ss_pred cceeeEEEc--CC----CceeEeecccccEEEecCceeeHHHHhhhhcc-cceeEEEc-------cCC----CEEEEcCC
Confidence 579999999 99 899999885 9999999743221122345555 79999999 777 4555544
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
++.|++|+.. ...++.+.+|. ..|.+++|+| +...+++++.||+|+|||....+.-..+.
T Consensus 159 gG~iKyWqpn----------------mnnVk~~~ahh~eaIRdlafSp---nDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 159 GGMIKYWQPN----------------MNNVKIIQAHHAEAIRDLAFSP---NDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred CceEEecccc----------------hhhhHHhhHhhhhhhheeccCC---CCceeEEecCCCeEEEEeccCCchhheec
Confidence 8999999987 34455555655 8999999999 88889999999999999998877766665
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|. -.+.++.++ |...+||+|+.|+.|++||.+ ++.++..+.+
T Consensus 220 GHg-wdVksvdWH---P~kgLiasgskDnlVKlWDpr---------------------------------Sg~cl~tlh~ 262 (464)
T KOG0284|consen 220 GHG-WDVKSVDWH---PTKGLIASGSKDNLVKLWDPR---------------------------------SGSCLATLHG 262 (464)
T ss_pred cCC-CCcceeccC---CccceeEEccCCceeEeecCC---------------------------------Ccchhhhhhh
Confidence 443 345566664 567799999999999999999 8899999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~ 331 (1088)
|+..|.++.|+|++.+|+|+|.|..++++|+++. +++ +.+.+|...++++.|+ +++|.+|+.||.|.
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m--------kEl--~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM--------KEL--FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehhHh--------HHH--HHhhcchhhheeeccccccccceeeccCCCceE
Confidence 9999999999999999999999999999999963 333 3889999999999998 68999999999999
Q ss_pred EEcCC-CceeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 332 VWGSD-GKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 332 vWd~~-~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.|.+. .+++..+ .+|.+ .||+++|+|-|.+|++|+.|.++++|.-
T Consensus 333 h~~v~~~~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEeccccccccCCCccccc-ceeeeeccccceeEeecCCCcceeeecc
Confidence 99994 5555554 46776 7999999999999999999999999975
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=232.98 Aligned_cols=282 Identities=18% Similarity=0.233 Sum_probs=227.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC---eeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|.+.|..++++ |- .|.+||+|+ |..|+||+...+ .+...+...+...|..++|+ |.| ++|
T Consensus 13 h~~r~W~~awh--p~---~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-------p~g----~~L 76 (312)
T KOG0645|consen 13 HKDRVWSVAWH--PG---KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-------PHG----RYL 76 (312)
T ss_pred CCCcEEEEEec--cC---CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-------CCC----cEE
Confidence 55789999999 74 256888887 799999998853 44445544455579999999 888 677
Q ss_pred EEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC---
Q 001391 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--- 167 (1088)
Q Consensus 92 a~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~--- 167 (1088)
++++ |.++.||.-..+. ++++..+.||...|.|++|++ +|.+|||++.|+.|-||.+..+
T Consensus 77 a~aSFD~t~~Iw~k~~~e-------------fecv~~lEGHEnEVK~Vaws~---sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGE-------------FECVATLEGHENEVKCVAWSA---SGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred EEeeccceEEEeecCCCc-------------eeEEeeeeccccceeEEEEcC---CCCEEEEeeCCCeEEEEEecCCCcE
Confidence 7766 9999999877544 889999999999999999999 9999999999999999999754
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
++...++.|... +-.+.+ -|...+|++++.|++|++|+-.. ...-.
T Consensus 141 ec~aVL~~HtqD-VK~V~W---HPt~dlL~S~SYDnTIk~~~~~~------------------------------dddW~ 186 (312)
T KOG0645|consen 141 ECIAVLQEHTQD-VKHVIW---HPTEDLLFSCSYDNTIKVYRDED------------------------------DDDWE 186 (312)
T ss_pred EEEeeecccccc-ccEEEE---cCCcceeEEeccCCeEEEEeecC------------------------------CCCee
Confidence 345566655432 223344 36678999999999999998650 11457
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED 327 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D 327 (1088)
+.+.+.+|+..|.+++|+|.|.+|+++++|++|+||..... ...-|...+..+.|.+..|++++.|
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------------~~~~~sr~~Y~v~W~~~~IaS~ggD 252 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------------LSGMHSRALYDVPWDNGVIASGGGD 252 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------------cchhcccceEeeeecccceEeccCC
Confidence 88999999999999999999999999999999999997652 3345778899999998899999999
Q ss_pred CcEEEEcCCCc-------ee-EEEcccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEcC
Q 001391 328 CTCRVWGSDGK-------QL-KMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 328 g~i~vWd~~~~-------~~-~~~~~h~~~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.|+++..... .+ ..-..|.. .|.++.|+|. .++|++|+.||.|++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999987321 11 23355776 6999999995 6799999999999999873
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=239.04 Aligned_cols=280 Identities=20% Similarity=0.320 Sum_probs=232.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|.|.|..+.|+ |+ +.++|+|+ |..|.+|++.. .+-...+++|.+ .|.++.|. +|++ .++.+
T Consensus 46 h~geI~~~~F~--P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~~-------~d~s---~i~S~ 108 (338)
T KOG0265|consen 46 HKGEIYTIKFH--PD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-AVMELHGM-------RDGS---HILSC 108 (338)
T ss_pred CcceEEEEEEC--CC----CCeEeecCCcceEEEEeccccccceeeeccccc-eeEeeeec-------cCCC---EEEEe
Confidence 67999999999 99 99999977 89999999643 344566778777 69999999 7773 66666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+.|++++.||.++ .+.++.+++|.+-|+++..+. -...++.+|+.|+++++||+++...++++
T Consensus 109 gtDk~v~~wD~~t---------------G~~~rk~k~h~~~vNs~~p~r--rg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 109 GTDKTVRGWDAET---------------GKRIRKHKGHTSFVNSLDPSR--RGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred cCCceEEEEeccc---------------ceeeehhccccceeeecCccc--cCCeEEEecCCCceEEEEeecccchhhcc
Confidence 7799999999996 568889999999999999443 23457888999999999999998888777
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
...- .+.++.| ..++..+.+|+.|+.|++||++ .....+.+.
T Consensus 172 ~~ky--qltAv~f---~d~s~qv~sggIdn~ikvWd~r---------------------------------~~d~~~~ls 213 (338)
T KOG0265|consen 172 ENKY--QLTAVGF---KDTSDQVISGGIDNDIKVWDLR---------------------------------KNDGLYTLS 213 (338)
T ss_pred ccce--eEEEEEe---cccccceeeccccCceeeeccc---------------------------------cCcceEEee
Confidence 4432 3445554 5678899999999999999998 677889999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc----ceEEEEEC--CCEEEEEeCC
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA----RVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~----~I~~v~~~--~~~l~sg~~D 327 (1088)
||.+.|+.+..+|+|.++.+-+.|.++++||++.... ..++++ .+.+|.- ....++|+ +..+-.|+.|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----~~R~v~--if~g~~hnfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----SQRCVK--IFQGHIHNFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCC----CCceEE--EeecchhhhhhhcceeeccCCCCcccccccc
Confidence 9999999999999999999999999999999987533 123454 5555533 23566777 5688889999
Q ss_pred CcEEEEcCC-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 001391 328 CTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1088)
Q Consensus 328 g~i~vWd~~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~i 374 (1088)
..+++||.. .+.+..+.+|.+ .|..++|+|...+|.+++.|.+|.+
T Consensus 288 r~vyvwd~~~r~~lyklpGh~g-svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 288 RFVYVWDTTSRRILYKLPGHYG-SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ceEEEeecccccEEEEcCCcce-eEEEeeecCCCcEEEEeccCceeEe
Confidence 999999994 478899999999 7999999999999999999999876
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=254.74 Aligned_cols=281 Identities=19% Similarity=0.295 Sum_probs=224.3
Q ss_pred cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
.+|.++++. |+ .++....|++|+|||.+. ..+...+.||++.|.|+.|
T Consensus 198 kgVYClQYD--------D~----kiVSGlrDnTikiWD~n~---------------~~c~~~L~GHtGSVLCLqy----- 245 (499)
T KOG0281|consen 198 KGVYCLQYD--------DE----KIVSGLRDNTIKIWDKNS---------------LECLKILTGHTGSVLCLQY----- 245 (499)
T ss_pred CceEEEEec--------ch----hhhcccccCceEEecccc---------------HHHHHhhhcCCCcEEeeec-----
Confidence 468999985 32 344444599999999884 5678889999999999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
+.+.|++|+.|.+|++||+++++.+.++-+|...+ ..+.| +..++++++.|.+|.+||+...
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaV-Lhlrf-----~ng~mvtcSkDrsiaVWdm~sp------------ 307 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAV-LHLRF-----SNGYMVTCSKDRSIAVWDMASP------------ 307 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhccee-EEEEE-----eCCEEEEecCCceeEEEeccCc------------
Confidence 66799999999999999999999999887776553 34554 3568999999999999999811
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
......+.+.||...|+.+.|+ .++++++|.|++|++|++.+. +.+. ++.
T Consensus 308 ------------------s~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~--------efvR--tl~ 357 (499)
T KOG0281|consen 308 ------------------TDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC--------EFVR--TLN 357 (499)
T ss_pred ------------------hHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce--------eeeh--hhh
Confidence 1234556678999999999995 459999999999999999995 5554 899
Q ss_pred ccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCc
Q 001391 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGS 384 (1088)
Q Consensus 306 ~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~ 384 (1088)
+|...|.|+.+.+.++++|+.|.+||+||+ .|.+++.+++|.. -|.++.|.. +.+++|+.||+|++||+....-.
T Consensus 358 gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd~--krIVSGaYDGkikvWdl~aaldp- 433 (499)
T KOG0281|consen 358 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDN--KRIVSGAYDGKIKVWDLQAALDP- 433 (499)
T ss_pred cccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheeecC--ceeeeccccceEEEEecccccCC-
Confidence 999999999999999999999999999999 8999999999998 699999964 57999999999999999542111
Q ss_pred ccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccC
Q 001391 385 LESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM 450 (1088)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~ 450 (1088)
..+.....+..+-.|.+.|-.+.|.. -++++++.+..|+.|++.+.
T Consensus 434 -------------------ra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 434 -------------------RAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred -------------------cccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCCC
Confidence 00112222333345566777777753 36777788888887776554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=240.81 Aligned_cols=302 Identities=15% Similarity=0.150 Sum_probs=243.5
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
|+|....||++.+|. |-..|+|+.|+ .| +.|||+|. +|.|+||..+++.....+.. +...|.=+.
T Consensus 83 GgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hd----gtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~ 155 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HD----GTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLK 155 (399)
T ss_pred CCCceEEEEEccCCcceeEecCCCCceEEEEEc--cC----ceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEE
Confidence 678889999999998 66789999999 77 89999999 89999999999988888763 333577778
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
|+ |.+ +.++|.+.|+.+-+|.+... ...+.+.||+.++++-.|.| +|+.+++
T Consensus 156 WH-------p~a---~illAG~~DGsvWmw~ip~~---------------~~~kv~~Gh~~~ct~G~f~p---dGKr~~t 207 (399)
T KOG0296|consen 156 WH-------PRA---HILLAGSTDGSVWMWQIPSQ---------------ALCKVMSGHNSPCTCGEFIP---DGKRILT 207 (399)
T ss_pred ec-------ccc---cEEEeecCCCcEEEEECCCc---------------ceeeEecCCCCCcccccccC---CCceEEE
Confidence 88 555 25666666999999999852 46677889999999999999 9999999
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
|..||+|++||..+++.+..+...+......+.+ +..+..+.+|..++.+++-...+++.....
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~---~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~------------- 271 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL---NLAGSTLTKGNSEGVACGVNNGSGKVVNCN------------- 271 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCcccc---ccccceeEeccCCccEEEEccccceEEEec-------------
Confidence 9999999999999999988887544333333333 456788999999999988877632222110
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp---~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~ 309 (1088)
.+.......+++..+.+|.+.| .-++.++|+.||+|.|||+...+. +....|..
T Consensus 272 ------------n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-----------R~~c~he~ 328 (399)
T KOG0296|consen 272 ------------NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-----------RHICEHED 328 (399)
T ss_pred ------------CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-----------heeccCCC
Confidence 0001111224666666666555 456789999999999999988543 36678999
Q ss_pred ceEEEEECC-CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 310 RVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 310 ~I~~v~~~~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.|..+.|.+ .+|++++.||.|+.||. +|+++.++.+|.. +|..++++|+.++++|++.|++.++++.
T Consensus 329 ~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 329 GVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999996 89999999999999999 9999999999998 7999999999999999999999999986
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=269.01 Aligned_cols=236 Identities=20% Similarity=0.343 Sum_probs=203.7
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-------------------------------CeeEEEEeeeCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-------------------------------GTLIRPFQVFHG 65 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-------------------------------g~~~~~~~~~~~ 65 (1088)
..++|..|+ +| .++||+|. |..|++|.+.. +....++.+|.+
T Consensus 379 ~~v~ca~fS--dd----ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 379 QGVTCAEFS--DD----SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred CcceeEeec--CC----cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 358899999 88 78999998 79999999862 122345667777
Q ss_pred cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
+|.+..|+ |+.+ .+|.++.|+++|+|.+.+ ...+-.++||..+|+++.|+|
T Consensus 453 -PVyg~sFs-------Pd~r---fLlScSED~svRLWsl~t---------------~s~~V~y~GH~~PVwdV~F~P--- 503 (707)
T KOG0263|consen 453 -PVYGCSFS-------PDRR---FLLSCSEDSSVRLWSLDT---------------WSCLVIYKGHLAPVWDVQFAP--- 503 (707)
T ss_pred -ceeeeeec-------cccc---ceeeccCCcceeeeeccc---------------ceeEEEecCCCcceeeEEecC---
Confidence 89999999 6653 666667799999999995 567778889999999999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
-|-++|||+.|++.++|..........+.+|-.. +-++.| .|+..++++|+.|.++++||+.
T Consensus 504 ~GyYFatas~D~tArLWs~d~~~PlRifaghlsD-V~cv~F---HPNs~Y~aTGSsD~tVRlWDv~-------------- 565 (707)
T KOG0263|consen 504 RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD-VDCVSF---HPNSNYVATGSSDRTVRLWDVS-------------- 565 (707)
T ss_pred CceEEEecCCCceeeeeecccCCchhhhcccccc-cceEEE---CCcccccccCCCCceEEEEEcC--------------
Confidence 9999999999999999999987777776665432 334455 4789999999999999999998
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
++..++.|.||.++|.+++|+|+|++|++|+.|+.|.+||+.+++ .+. .+.
T Consensus 566 -------------------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~--------~v~--~l~ 616 (707)
T KOG0263|consen 566 -------------------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS--------LVK--QLK 616 (707)
T ss_pred -------------------CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc--------chh--hhh
Confidence 788899999999999999999999999999999999999999963 343 788
Q ss_pred ccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
+|++.|.++.|+ +..|++|+.|++|++||+
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999999998 899999999999999998
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-25 Score=244.17 Aligned_cols=478 Identities=13% Similarity=0.142 Sum_probs=326.0
Q ss_pred CCCCceEEecCCCce---------eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 2 GKKDLSEWRLDVGQY---------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~---------~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
.||.|.+|++..+-+ .+.|.+++|+ +. +++.-+|-+|.|.-||+.+++.+..+....+ .|++|+
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-~IWsia 117 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EG----GRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-AIWSIA 117 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cC----CeEEeecCCceEEEEecccCceeEEecCCCc-ceeEEE
Confidence 478999999998763 3458899999 76 7887778899999999999999988887555 799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
.+ |.+. .+.+.+.||.+..++...+. .+.-+.|....++|.++.|+| ++..|++
T Consensus 118 i~-------p~~~---~l~IgcddGvl~~~s~~p~~-------------I~~~r~l~rq~sRvLslsw~~---~~~~i~~ 171 (691)
T KOG2048|consen 118 IN-------PENT---ILAIGCDDGVLYDFSIGPDK-------------ITYKRSLMRQKSRVLSLSWNP---TGTKIAG 171 (691)
T ss_pred eC-------Cccc---eEEeecCCceEEEEecCCce-------------EEEEeecccccceEEEEEecC---CccEEEe
Confidence 99 4441 55555678977777766543 566667777789999999999 9999999
Q ss_pred EEcCCcEEEEEcCCCceEEE-------eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 153 GCSDNSIRVWDISNSSIILE-------VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~-------~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
|+.||.|++||...+..+.. +...+.+++|++.+. ....|++|..-|+|++||..
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L----rd~tI~sgDS~G~V~FWd~~-------------- 233 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL----RDSTIASGDSAGTVTFWDSI-------------- 233 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe----ecCcEEEecCCceEEEEccc--------------
Confidence 99999999999999877662 223467889999885 34589999999999999998
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
.+..++.+..|...|.+++..+++.++.+++.|+.|..+...+... +.+......
T Consensus 234 -------------------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~------~wv~~~~r~ 288 (691)
T KOG2048|consen 234 -------------------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS------EWVINSRRD 288 (691)
T ss_pred -------------------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc------ceeeecccc
Confidence 7788888999999999999999999999999999999998877533 222212556
Q ss_pred ccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC--------EEEEEc
Q 001391 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA--------IKVHQF 377 (1088)
Q Consensus 306 ~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~--------I~iwd~ 377 (1088)
.|...|.+++..+..+++|+.|.++.+-.... ..+..|.. -...|.+..+..+..+.. +.+|.+
T Consensus 289 ~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~---~~~~~h~~-----~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 289 LHAHDVRSMAVIENALISGGRDFTLAICSSRE---FKNMDHRQ-----KNLFPASDRVSVAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred CCcccceeeeeecceEEecceeeEEEEccccc---cCchhhhc-----cccccccceeecCccceEEEEeccccccceec
Confidence 78889999999999999999999998866522 11112221 111233333344444444 444444
Q ss_pred CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEE
Q 001391 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1088)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~ 457 (1088)
.....+ ++. +...++ .........|.+.+.+|+|.+++.+.-..+..+++......+-..
T Consensus 361 GS~~~~---g~~------~~~~Ll-----------kl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~ 420 (691)
T KOG2048|consen 361 GSVILQ---GEY------NYIHLL-----------KLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVIN 420 (691)
T ss_pred cCcccc---ccc------Chhhhe-----------eeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEE
Confidence 221110 000 111111 122223457999999999999888765555555554433322211
Q ss_pred eeeecCC-cceEEEecCCCCCCCcCCCCCeEEEec-CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCC
Q 001391 458 ILQVSEG-MPIICMDLLSNEPKYPCGIDDWVALGD-GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535 (1088)
Q Consensus 458 ~~~~~~~-~~i~~l~~~~~~~~~s~~~~~~la~g~-~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 535 (1088)
+-..... .....+. +.. +.+.++..+ ....+.++++++.+......+... .... ... ....|++|
T Consensus 421 v~~~~~~~~~a~~i~-------fti-d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~---~~~~-~I~-~l~~SsdG 487 (691)
T KOG2048|consen 421 VDDVPLALLDASAIS-------FTI-DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ---AKCP-SIS-RLVVSSDG 487 (691)
T ss_pred eccchhhhccceeeE-------EEe-cCceEEEEecccceeEEEEecCcchhhhhccccc---cCCC-cce-eEEEcCCC
Confidence 1111110 0111111 111 234444444 677888888876554322221111 0111 111 24578999
Q ss_pred eEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEee-eCCCEEEEEcCCCcEEEEeCCc
Q 001391 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS-FEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 536 ~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~s-pdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
+|+++.+.+|.|.+|+++.... . .+...-...+|+++++ ++..-|+.+..++.++-||++.
T Consensus 488 ~yiaa~~t~g~I~v~nl~~~~~------------~---~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 488 NYIAAISTRGQIFVYNLETLES------------H---LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred CEEEEEeccceEEEEEccccee------------e---cchhccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 9999999999999999985531 1 1111224669999999 5677899999999999999954
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=244.13 Aligned_cols=257 Identities=20% Similarity=0.350 Sum_probs=215.1
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-CeeEEEEeeeCCcceEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i 71 (1088)
++|.+|++||..+|+ |...|..|+|+ .. |++|++++ |=.+++||.++ -++++...+|+- .|.++
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~--a~----Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h-~vS~V 199 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHTDSVFDISFD--AS----GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH-GVSSV 199 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccccceeEEEEe--cC----ccEEEecCCccchhheeHHHHHHHHHHhcCccc-ceeeE
Confidence 479999999999998 77889999999 44 89999998 55599999887 467777777665 69999
Q ss_pred EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
.|- |-| +.++.++.|++|+.|++.+ +.++.++.+|..||..++.+. ||.++|
T Consensus 200 ~f~-------P~g---d~ilS~srD~tik~We~~t---------------g~cv~t~~~h~ewvr~v~v~~---DGti~A 251 (406)
T KOG0295|consen 200 FFL-------PLG---DHILSCSRDNTIKAWECDT---------------GYCVKTFPGHSEWVRMVRVNQ---DGTIIA 251 (406)
T ss_pred EEE-------ecC---CeeeecccccceeEEeccc---------------ceeEEeccCchHhEEEEEecC---CeeEEE
Confidence 999 444 2666677799999999996 568899999999999999999 999999
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccC---CceeEEEEeee--------cCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLW--------GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~---~~~~~~s~~~~--------~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
+++.|.+|++|-+.++++...+..+ ..++.+.-... +....+..+.+++.|++|++||+.
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--------- 322 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--------- 322 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc---------
Confidence 9999999999999999665544433 33433321100 011234689999999999999999
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
++.++.++.||..+|..++|+|.|+||+|+.+|+++++||+.+. ++.+
T Consensus 323 ------------------------tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--------~cmk 370 (406)
T KOG0295|consen 323 ------------------------TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--------QCMK 370 (406)
T ss_pred ------------------------CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--------eeee
Confidence 88999999999999999999999999999999999999999996 4454
Q ss_pred ceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 301 SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 301 ~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
++..|+.-++++.|+ -.+++||+-|.++++|..
T Consensus 371 --~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 --TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 777999999999998 469999999999999963
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=269.34 Aligned_cols=281 Identities=21% Similarity=0.366 Sum_probs=236.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
+...|+++.|+ |+ +++++++. ++.+++|+..+++ .++.+.+|.. .|.+++|+ ||++ .++.
T Consensus 158 ~~~sv~~~~fs--~~----g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-~v~~~~fs-------~d~~---~l~s 220 (456)
T KOG0266|consen 158 ECPSVTCVDFS--PD----GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-GVSDVAFS-------PDGS---YLLS 220 (456)
T ss_pred ccCceEEEEEc--CC----CCeEEEccCCCcEEEeecccccchhhcccccccc-ceeeeEEC-------CCCc---EEEE
Confidence 45789999999 99 88888886 8999999998877 7777777665 79999999 8873 4445
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
++.|++++|||+... ...++++++|...|++++|+| +++++++|+.|++|+|||+.+++++..
T Consensus 221 ~s~D~tiriwd~~~~--------------~~~~~~l~gH~~~v~~~~f~p---~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDD--------------GRNLKTLKGHSTYVTSVAFSP---DGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred ecCCceEEEeeccCC--------------CeEEEEecCCCCceEEEEecC---CCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 556999999999432 478899999999999999999 999999999999999999999999999
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee--eeE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV--NLF 250 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (1088)
+..|... +.++++ ++++..|++++.|+.|++||+. ++. ++.
T Consensus 284 l~~hs~~-is~~~f---~~d~~~l~s~s~d~~i~vwd~~---------------------------------~~~~~~~~ 326 (456)
T KOG0266|consen 284 LKGHSDG-ISGLAF---SPDGNLLVSASYDGTIRVWDLE---------------------------------TGSKLCLK 326 (456)
T ss_pred eeccCCc-eEEEEE---CCCCCEEEEcCCCccEEEEECC---------------------------------CCceeeee
Confidence 9888764 445554 7899999999999999999998 444 456
Q ss_pred EEeCCCCC--EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE---EEC--CCEEEE
Q 001391 251 RLVGHEGS--IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC---CLT--DSFIIT 323 (1088)
Q Consensus 251 ~~~gh~~~--V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v---~~~--~~~l~s 323 (1088)
.+.+++.. +..+.|+|+++++++++.|+.+++||+..... .. ...+|...+.+. ... +.++++
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------VG--TYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------ee--eecccCCcceeEecccccCCCCeEEE
Confidence 66777666 99999999999999999999999999998543 32 566666654222 222 689999
Q ss_pred EeCCCcEEEEcC-CCceeEEEccc-CCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEcC
Q 001391 324 AGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~Dg~i~vWd~-~~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~--~Dg~I~iwd~~ 378 (1088)
|++|+.|++|+. ++..+..+.+| .. .+..+.+++..+++++++ .|+.+++|..+
T Consensus 397 g~~d~~v~~~~~~s~~~~~~l~~h~~~-~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSGGILQRLEGHSKA-AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EeCCceEEEEeCCccchhhhhcCCCCC-ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999 68888899999 65 699999999999999998 78999999763
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=244.33 Aligned_cols=278 Identities=23% Similarity=0.441 Sum_probs=232.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ ++.|++||+.+++.+..+..+.. .+..+.|+ ++++ .+++++
T Consensus 8 h~~~i~~~~~~--~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~-------~~~~---~l~~~~ 70 (289)
T cd00200 8 HTGGVTCVAFS--PD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAAS-------ADGT---YLASGS 70 (289)
T ss_pred cCCCEEEEEEc--CC----CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEEC-------CCCC---EEEEEc
Confidence 56899999999 98 88999988 79999999999888888887665 68899999 6652 444445
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.++.|++|++... +....+..|...|.++.|+| ++.++++++.|+.|++||+.+++....+.
T Consensus 71 ~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 71 SDKTIRLWDLETG---------------ECVRTLTGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred CCCeEEEEEcCcc---------------cceEEEeccCCcEEEEEEcC---CCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 5999999999842 34556678888999999999 88888888889999999999888877776
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+.. .+.++.+ .+++.++++++.++.|++||+. ..+.+..+..
T Consensus 133 ~~~~-~i~~~~~---~~~~~~l~~~~~~~~i~i~d~~---------------------------------~~~~~~~~~~ 175 (289)
T cd00200 133 GHTD-WVNSVAF---SPDGTFVASSSQDGTIKLWDLR---------------------------------TGKCVATLTG 175 (289)
T ss_pred cCCC-cEEEEEE---cCcCCEEEEEcCCCcEEEEEcc---------------------------------ccccceeEec
Confidence 4432 3556665 4567888888889999999998 5666777889
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|...|.++.|+|+++.+++++.|+.|++||+...+ .+. .+..|...+.+++|+ +.++++++.||.+++
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK--------CLG--TLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCc--------eec--chhhcCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 99999999999999999999999999999998743 232 445788899999998 467777777999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
|+. .++.+..+..|.. .|.+++|+|++.+|++++.||.+++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 246 WDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCceeEEEccccCC-cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999 5788888888887 699999999999999999999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-23 Score=229.55 Aligned_cols=507 Identities=14% Similarity=0.138 Sum_probs=327.8
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
..+|+||||+ .. .+.||++- +|.|.||++..+ -+...+.+++...|.+++|+ +.+ +++.++
T Consensus 25 Ps~I~slA~s--~k----S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-------e~~----RLFS~g 87 (691)
T KOG2048|consen 25 PSEIVSLAYS--HK----SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-------EGG----RLFSSG 87 (691)
T ss_pred ccceEEEEEe--cc----CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-------cCC----eEEeec
Confidence 4779999999 55 45677776 899999999876 45567778887789999998 555 788888
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.+++|.-||+.+ ++....+....+.||+++.+| .+..++.|+.||.+...+...++......
T Consensus 88 ~sg~i~EwDl~~---------------lk~~~~~d~~gg~IWsiai~p---~~~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 88 LSGSITEWDLHT---------------LKQKYNIDSNGGAIWSIAINP---ENTILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred CCceEEEEeccc---------------CceeEEecCCCcceeEEEeCC---ccceEEeecCCceEEEEecCCceEEEEee
Confidence 899999999985 455666667779999999999 88999999999988888888877654433
Q ss_pred -cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 175 -SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 175 -~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
....+.+.++.+ .+++..|++|+.||.|++||..... ++.+-. . .+-.+.
T Consensus 150 l~rq~sRvLslsw---~~~~~~i~~Gs~Dg~Iriwd~~~~~---------------------t~~~~~----~-~~d~l~ 200 (691)
T KOG2048|consen 150 LMRQKSRVLSLSW---NPTGTKIAGGSIDGVIRIWDVKSGQ---------------------TLHIIT----M-QLDRLS 200 (691)
T ss_pred cccccceEEEEEe---cCCccEEEecccCceEEEEEcCCCc---------------------eEEEee----e-cccccc
Confidence 344566778877 6888899999999999999998211 000000 0 011111
Q ss_pred -CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcE
Q 001391 254 -GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1088)
Q Consensus 254 -gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i 330 (1088)
+-.--|++|.|..+ ..+++|...|+|.+||...+. .++ ....|.+.|.+++.. ++.+++++.|+.+
T Consensus 201 k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gT--------Liq--S~~~h~adVl~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 201 KREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGT--------LIQ--SHSCHDADVLALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred cCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcc--------hhh--hhhhhhcceeEEEEcCCCCeEEEccCCCce
Confidence 23345788888855 468999999999999998864 333 667889999999998 5899999999999
Q ss_pred EEEcCCCc-e----eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 331 RVWGSDGK-Q----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 331 ~vWd~~~~-~----~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
..+...+. . ......|.. -|.+++..++ .|++||.|..+.+-..... ....|.....+.
T Consensus 270 i~~~~~~~~~~wv~~~~r~~h~h-dvrs~av~~~--~l~sgG~d~~l~i~~s~~~---~~~~h~~~~~~p---------- 333 (691)
T KOG2048|consen 270 IQYSLTTNKSEWVINSRRDLHAH-DVRSMAVIEN--ALISGGRDFTLAICSSREF---KNMDHRQKNLFP---------- 333 (691)
T ss_pred EEEEecCCccceeeeccccCCcc-cceeeeeecc--eEEecceeeEEEEcccccc---Cchhhhcccccc----------
Confidence 99888433 1 122344555 5999999887 7999999998887655321 111111000000
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCc---ceeEEe--eeecCCcceEEEecCCCCCCCc
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDS---VNWNKI--LQVSEGMPIICMDLLSNEPKYP 480 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~---~~~~~~--~~~~~~~~i~~l~~~~~~~~~s 480 (1088)
+. ..+...|..++++.-....+..|.+-.... .....+ +...+...|.+.++.
T Consensus 334 ------------~~---~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiS------- 391 (691)
T KOG2048|consen 334 ------------AS---DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAIS------- 391 (691)
T ss_pred ------------cc---ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccC-------
Confidence 00 011122333444443333333333222100 010111 122334567777774
Q ss_pred CCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEEC-CCCeEEEEecCCCCCcc
Q 001391 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD-PKGRLKLWQLCDPFSSV 559 (1088)
Q Consensus 481 ~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~-~dg~i~vwd~~~~~~~~ 559 (1088)
|++++|+.+.- .+.++|.+............. .+....-.....++-|+..++.++ ....+.+++++.+....
T Consensus 392 -Pdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~----~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 392 -PDGNLIAISTV-SRTKIYRLQPDPNVKVINVDD----VPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred -CCCCEEEEeec-cceEEEEeccCcceeEEEecc----chhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 45689988874 477888886533222111110 111111112234556666666555 66777777776543211
Q ss_pred cccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccC-cceeeccccccc
Q 001391 560 CYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVS-PLNYFKGAHGIS 638 (1088)
Q Consensus 560 ~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~-~~~~~~g~hg~~ 638 (1088)
.. ..-..+-...|+.+..||+|++||..+.+|.|.+|++++... ..+. .+. .
T Consensus 466 l~-----------~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~--------~~l~~rln--------~ 518 (691)
T KOG2048|consen 466 LK-----------SIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES--------HLLKVRLN--------I 518 (691)
T ss_pred hh-----------ccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee--------ecchhccC--------c
Confidence 11 000113456799999999999999999999999999986432 0111 111 3
Q ss_pred ceeEEEEEeccCCceEEEEecCCCeEEEEEeec
Q 001391 639 TVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 639 ~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
.||.+++.+. +...|+.+-.|+.+.-++++.
T Consensus 519 ~vTa~~~~~~--~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 519 DVTAAAFSPF--VRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ceeeeecccc--ccCcEEEEecCCeEEEEecch
Confidence 5888888853 334577777788888888844
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-25 Score=277.19 Aligned_cols=284 Identities=18% Similarity=0.249 Sum_probs=221.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----e----eEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----T----LIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~----~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
|.+.|++++|+ |+ +.+||+|+ |+.|+|||..+. . .+..+.. + ..|.+++|++ +++
T Consensus 482 ~~~~V~~i~fs--~d----g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~-~~v~~l~~~~------~~~-- 545 (793)
T PLN00181 482 SSNLVCAIGFD--RD----GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R-SKLSGICWNS------YIK-- 545 (793)
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c-CceeeEEecc------CCC--
Confidence 66789999999 99 88999887 799999997542 1 1222332 2 3689999983 233
Q ss_pred eeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC
Q 001391 87 VTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 87 ~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~ 165 (1088)
.+|++ +.|++|+|||+.. .+.+..+.+|.+.|++++|+| .++.+|++|+.|++|++||+.
T Consensus 546 --~~las~~~Dg~v~lWd~~~---------------~~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 546 --SQVASSNFEGVVQVWDVAR---------------SQLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred --CEEEEEeCCCeEEEEECCC---------------CeEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECC
Confidence 34554 4599999999874 356778889999999999996 267899999999999999999
Q ss_pred CCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 166 NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 166 ~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
++..+..+..+. .+.++.+. ++++..+++|+.||.|++||++ .
T Consensus 607 ~~~~~~~~~~~~--~v~~v~~~--~~~g~~latgs~dg~I~iwD~~---------------------------------~ 649 (793)
T PLN00181 607 QGVSIGTIKTKA--NICCVQFP--SESGRSLAFGSADHKVYYYDLR---------------------------------N 649 (793)
T ss_pred CCcEEEEEecCC--CeEEEEEe--CCCCCEEEEEeCCCeEEEEECC---------------------------------C
Confidence 998887776442 34555552 4578999999999999999997 2
Q ss_pred e-eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEE
Q 001391 246 A-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1088)
Q Consensus 246 ~-~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~ 322 (1088)
. .++..+.+|...|.++.|. ++.++++++.|++|++||+..... ......+. .+.+|...+.+++|+ +.+|+
T Consensus 650 ~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~--~~~~~~l~--~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 650 PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS--GINETPLH--SFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc--ccCCcceE--EEcCCCCCeeEEEEcCCCCEEE
Confidence 2 2456778999999999997 778999999999999999975321 00013343 778999999999998 68999
Q ss_pred EEeCCCcEEEEcC-CCceeEEE-------------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 323 TAGEDCTCRVWGS-DGKQLKMI-------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 323 sg~~Dg~i~vWd~-~~~~~~~~-------------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+|+.|+++++|+. ...++..+ ..|.. .|.+++|+|++..|++|+.||.|++|++
T Consensus 725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-FISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999997 33332211 12333 5999999999999999999999999986
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=222.27 Aligned_cols=281 Identities=17% Similarity=0.273 Sum_probs=224.0
Q ss_pred EEEEeccCCCCCCCCEEEE-E------eCCeEEEEECCCCeeEEEEeeeC-CcceEEEEecccccccCCCccceeeEEEE
Q 001391 22 ALCFVHLPSHLSSLPFLLA-G------SGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laa-g------~d~~I~vwd~~tg~~~~~~~~~~-~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
++.|| |- -..+++++ + ++|.|.|-|+..++-+..++.++ ...+++++|++. .+. .++++
T Consensus 13 svqfS--Pf--~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-----~e~----~~~~a 79 (311)
T KOG0277|consen 13 SVQFS--PF--VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-----HEN----QVIAA 79 (311)
T ss_pred eeEec--cc--ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-----Ccc----eEEEE
Confidence 67898 74 33444444 2 23899999997665555555432 235999999965 443 88999
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+|||+++|||+... ..+++.++.|...|.++.+++. +++.+++++-|++|++|+...+.-+.++
T Consensus 80 ~GDGSLrl~d~~~~--------------s~Pi~~~kEH~~EV~Svdwn~~--~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf 143 (311)
T KOG0277|consen 80 SGDGSLRLFDLTMP--------------SKPIHKFKEHKREVYSVDWNTV--RRRIFLTSSWDGTIKLWDPNRPNSVQTF 143 (311)
T ss_pred ecCceEEEeccCCC--------------CcchhHHHhhhhheEEeccccc--cceeEEeeccCCceEeecCCCCcceEee
Confidence 99999999997643 3678999999999999999982 5567888899999999999999999998
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.++.. .+|.+.+.+. ..+++++++.|+.+++||++ ..++.+. +.
T Consensus 144 ~gh~~-~Iy~a~~sp~--~~nlfas~Sgd~~l~lwdvr--------------------------------~~gk~~~-i~ 187 (311)
T KOG0277|consen 144 NGHNS-CIYQAAFSPH--IPNLFASASGDGTLRLWDVR--------------------------------SPGKFMS-IE 187 (311)
T ss_pred cCCcc-EEEEEecCCC--CCCeEEEccCCceEEEEEec--------------------------------CCCceeE-EE
Confidence 87654 5778777543 46799999999999999998 1333343 88
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC---CEEEEEeCCCc
Q 001391 254 GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCT 329 (1088)
Q Consensus 254 gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~---~~l~sg~~Dg~ 329 (1088)
.|...|.++.|+. +...++|++.|+.||.||++.-+. ++ ..+.+|.-.|..+.|++ .+|++++.|-+
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-------pl--~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-------PL--FELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhccc-------cc--eeecCCceEEEEEecCcchhhHhhhccccce
Confidence 9999999999997 456789999999999999998643 34 37899999999999994 68999999999
Q ss_pred EEEEcCC--CceeEEEcccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEc
Q 001391 330 CRVWGSD--GKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 330 i~vWd~~--~~~~~~~~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+|+||.. ...+.+...|.. -|..+.|++ +..++|+++.|..+.||+.
T Consensus 259 ~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 9999993 344556666766 688888876 4568999999999999985
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=222.35 Aligned_cols=282 Identities=14% Similarity=0.245 Sum_probs=228.2
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
..+.+|++ .|..+.|+ |+| ..++++| |+.|.+|++..+ .+....+++|.+.|.
T Consensus 41 m~l~gh~g-eI~~~~F~-------P~g----s~~aSgG~Dr~I~LWnv~gd--------------ceN~~~lkgHsgAVM 94 (338)
T KOG0265|consen 41 MLLPGHKG-EIYTIKFH-------PDG----SCFASGGSDRAIVLWNVYGD--------------CENFWVLKGHSGAVM 94 (338)
T ss_pred hhcCCCcc-eEEEEEEC-------CCC----CeEeecCCcceEEEEecccc--------------ccceeeeccccceeE
Confidence 34556666 69999999 887 7888877 999999998743 355677889999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
.+.|.+ |+..|+++|.|.+|+.||+++|+.+.+++.+..+ +.++. +....-.+|.+|+.|+++++||++
T Consensus 95 ~l~~~~---d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~-vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R----- 163 (338)
T KOG0265|consen 95 ELHGMR---DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF-VNSLD--PSRRGPQLVCSGSDDGTLKLWDIR----- 163 (338)
T ss_pred eeeecc---CCCEEEEecCCceEEEEecccceeeehhccccce-eeecC--ccccCCeEEEecCCCceEEEEeec-----
Confidence 999999 9999999999999999999999999999888764 33333 222344678899999999999999
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
+...++.+. .+-.++++.|..++..+.+|+-|+.|++||++...
T Consensus 164 ----------------------------~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d------- 207 (338)
T KOG0265|consen 164 ----------------------------KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND------- 207 (338)
T ss_pred ----------------------------ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc-------
Confidence 455554443 35679999999999999999999999999998753
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC-----CceeEEEcccCC---CCeEEEEEcCCCCEEEEE
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-----GKQLKMIKEHIG---RGIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-----~~~~~~~~~h~~---~~V~~l~~~~dg~~l~tg 366 (1088)
.. +++.||...|+.+..+ +.++.+-+.|+++++||+. .+++..+.+|.. .....++|+|+++.+..|
T Consensus 208 -~~--~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag 284 (338)
T KOG0265|consen 208 -GL--YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG 284 (338)
T ss_pred -ce--EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccc
Confidence 23 4899999999999998 7899999999999999982 345777877643 235678899999999999
Q ss_pred eCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEE-EEecCCeEEE
Q 001391 367 GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYH 444 (1088)
Q Consensus 367 ~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll-~~t~~g~i~~ 444 (1088)
+.|..+.+||.... +.++.+.+|.+.|.++.|.|...++ .+..+..||.
T Consensus 285 s~dr~vyvwd~~~r-----------------------------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 285 SADRFVYVWDTTSR-----------------------------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cccceEEEeecccc-----------------------------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999998532 2245567788899999999976554 4556666764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=239.25 Aligned_cols=270 Identities=13% Similarity=0.195 Sum_probs=223.1
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|..+.|. |+|+ ++++.+..|.+.+|+... +.....+..|.+.|.++.|++ +
T Consensus 98 ~V~~v~Wt-------PeGR---RLltgs~SGEFtLWNg~~---------------fnFEtilQaHDs~Vr~m~ws~---~ 149 (464)
T KOG0284|consen 98 PVNVVRWT-------PEGR---RLLTGSQSGEFTLWNGTS---------------FNFETILQAHDSPVRTMKWSH---N 149 (464)
T ss_pred ceeeEEEc-------CCCc---eeEeecccccEEEecCce---------------eeHHHHhhhhcccceeEEEcc---C
Confidence 58889999 8884 666667789999999753 455566779999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
+.+++||..+|.|++|+..-. .++.+..+....+..++| +|++..+++++.||+|+|||..
T Consensus 150 g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlaf---SpnDskF~t~SdDg~ikiWdf~--------------- 210 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAF---SPNDSKFLTCSDDGTIKIWDFR--------------- 210 (464)
T ss_pred CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheecc---CCCCceeEEecCCCeEEEEecc---------------
Confidence 999999999999999997533 344444444444555655 6888999999999999999998
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
..+.-..+.||.-.|.+++|+|....++++|.|..|++||.+++ +++. ++.+
T Consensus 211 ------------------~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg--------~cl~--tlh~ 262 (464)
T KOG0284|consen 211 ------------------MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--------SCLA--TLHG 262 (464)
T ss_pred ------------------CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--------chhh--hhhh
Confidence 45555667999999999999999999999999999999999996 4454 8899
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEcCCC-C
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQAF-L 381 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~~~~-~ 381 (1088)
|...|..+.|. +++|+++++|..++++|+ .-+.+..+++|.. -|++++|+|- ..+|.+||.||.|..|.+... .
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccceeeccCCCceEEEecccccc
Confidence 99999999998 689999999999999999 5788899999998 5999999994 468999999999999998521 1
Q ss_pred CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCe
Q 001391 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1088)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~ 441 (1088)
+. ..-..|...|.+++|.|=|.+|+.+++..
T Consensus 342 ~~-----------------------------~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 342 LG-----------------------------EIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred cc-----------------------------CCCcccccceeeeeccccceeEeecCCCc
Confidence 11 11124567899999999999988865544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=213.19 Aligned_cols=274 Identities=17% Similarity=0.212 Sum_probs=219.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+.++|.++.|. -| |+|.+++. |.+|++||...|.+++++.+|. ..|..++.+ .|.. .+.+++
T Consensus 16 ~qgaV~avryN--~d----GnY~ltcGsdrtvrLWNp~rg~liktYsghG-~EVlD~~~s-------~Dns---kf~s~G 78 (307)
T KOG0316|consen 16 AQGAVRAVRYN--VD----GNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-HEVLDAALS-------SDNS---KFASCG 78 (307)
T ss_pred cccceEEEEEc--cC----CCEEEEcCCCceEEeecccccceeeeecCCC-ceeeecccc-------cccc---ccccCC
Confidence 45899999999 77 88888755 8999999999999999999854 479999988 5652 445556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC--ceEEE
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILE 172 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~--~~~~~ 172 (1088)
||+.+.+||+++ .+.++.+.+|...|+.++|+. +...+++|+-|.++++||-++. ++++.
T Consensus 79 gDk~v~vwDV~T---------------Gkv~Rr~rgH~aqVNtV~fNe---esSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 79 GDKAVQVWDVNT---------------GKVDRRFRGHLAQVNTVRFNE---ESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred CCceEEEEEccc---------------CeeeeecccccceeeEEEecC---cceEEEeccccceeEEEEcccCCCCccch
Confidence 699999999996 578899999999999999998 8899999999999999998754 44555
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+..... .+.++.+ .+..|++|+.||+++.||++ .+......
T Consensus 141 ldea~D-~V~Si~v-----~~heIvaGS~DGtvRtydiR---------------------------------~G~l~sDy 181 (307)
T KOG0316|consen 141 LDEAKD-GVSSIDV-----AEHEIVAGSVDGTVRTYDIR---------------------------------KGTLSSDY 181 (307)
T ss_pred hhhhcC-ceeEEEe-----cccEEEeeccCCcEEEEEee---------------------------------cceeehhh
Confidence 543332 2445543 46789999999999999999 44444333
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce--EEEEEC--CCEEEEEeCCC
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV--WDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I--~~v~~~--~~~l~sg~~Dg 328 (1088)
. ..+|+++.|+++++..+.++.|+++|+-|-.+++. ++ ...||...- ..+++. ..++++|++||
T Consensus 182 ~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl--------L~--sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 182 F--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL--------LK--SYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred c--CCcceeEEecCCCCEEEEeeccceeeecccchhHH--------HH--HhcccccceeeeeeeecccceeEEeccCCc
Confidence 3 35899999999999999999999999999998643 43 667776643 445555 68999999999
Q ss_pred cEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
.+.+||+ ++..+..+..+..-.|.+++++|.-..++++... .+..|-
T Consensus 250 ~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred eEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 9999999 8888888988877338899999987777776543 455554
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=226.22 Aligned_cols=282 Identities=19% Similarity=0.265 Sum_probs=218.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~- 93 (1088)
|...|.+|... .+.+++|+ ||.++|||. .|+++.++.+|.+ +|..+++--. . +.. ..+++
T Consensus 104 hdDWVSsv~~~--------~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-~ik~v~~v~~---n-~~~----~~fvsa 165 (423)
T KOG0313|consen 104 HDDWVSSVKGA--------SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-PIKSVAWVIK---N-SSS----CLFVSA 165 (423)
T ss_pred chhhhhhhccc--------CceEEEeecCCeeEEEec-CCceEEEEecCCc-ceeeeEEEec---C-Ccc----ceEEEe
Confidence 34446666655 56888887 999999995 5899999999777 7998877521 1 221 34444
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC------
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS------ 167 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~------ 167 (1088)
+-|+++++|.++.+.. ..+.+....||...|-++...+ ++..+++|+.|.+|.||+..+.
T Consensus 166 s~Dqtl~Lw~~~~~~~-----------~~~~~~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGEN-----------KVKALKVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred cCCceEEEEEecCchh-----------hhhHHhHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCcccccc
Confidence 4599999999986541 1344455559999999999999 9999999999999999993221
Q ss_pred -------------------ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 168 -------------------SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 168 -------------------~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
..+..+.+|..+ +.++.+ ++...+++++.|++|+.||+.
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~-Vs~V~w----~d~~v~yS~SwDHTIk~WDle----------------- 289 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEP-VSSVVW----SDATVIYSVSWDHTIKVWDLE----------------- 289 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccc-eeeEEE----cCCCceEeecccceEEEEEee-----------------
Confidence 112333344332 334444 236789999999999999999
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~ 308 (1088)
.+...-++.+ ...++++.++|..++|++|+.|+.+|+||.+++.. ..+. ..+.+|.
T Consensus 290 ----------------tg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g------s~v~-~s~~gH~ 345 (423)
T KOG0313|consen 290 ----------------TGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG------SVVS-QSLIGHK 345 (423)
T ss_pred ----------------cccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC------ceeE-Eeeecch
Confidence 4555555443 56789999999999999999999999999998743 3444 4899999
Q ss_pred cceEEEEEC---CCEEEEEeCCCcEEEEcC-CCc-eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 309 ARVWDCCLT---DSFIITAGEDCTCRVWGS-DGK-QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 309 ~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~-~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
..|.++.|+ ..+|++|+.|+++++||+ ..+ ++..+.+|..+ |.++.|+. +.+|++||.|.+|+|+.-
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce-EEEEeccC-CceEEeccCcceEEEecc
Confidence 999999998 478999999999999999 444 89999999884 99999975 458999999999999865
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=209.95 Aligned_cols=252 Identities=19% Similarity=0.233 Sum_probs=209.3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
+..+.+..|.+.|..+.|+- ||++.++++.|.+|++|+...+.++++..++...++ .++. +.|...+++|+.|
T Consensus 8 kr~~~l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~---s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAAL---SSDNSKFASCGGD 80 (307)
T ss_pred hhceeecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccc---cccccccccCCCC
Confidence 45677889999999999999 999999999999999999999999999998876544 3333 4567899999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
..+.+||+. +++.++++.+|.+.|+.++|+.+...+++|+.|.++|+
T Consensus 81 k~v~vwDV~---------------------------------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~ 127 (307)
T KOG0316|consen 81 KAVQVWDVN---------------------------------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRL 127 (307)
T ss_pred ceEEEEEcc---------------------------------cCeeeeecccccceeeEEEecCcceEEEeccccceeEE
Confidence 999999999 89999999999999999999999999999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
||-++... ++++ .+..-...|.++...+..|+.|+.||++|.||+ .|+...-.-+| ||+++.|++|++
T Consensus 128 wDCRS~s~------ePiQ--ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~n 196 (307)
T KOG0316|consen 128 WDCRSRSF------EPIQ--ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGN 196 (307)
T ss_pred EEcccCCC------Cccc--hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCC
Confidence 99998654 5665 666777889999999999999999999999999 66655544444 799999999999
Q ss_pred EEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCC
Q 001391 362 LLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g 440 (1088)
.++.++.|+++++.|- .++.++.+.+|... - ..+.|.--..+...+.++.+|
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~--------e-------------------ykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNM--------E-------------------YKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccc--------e-------------------eeeeeeecccceeEEeccCCc
Confidence 9999999999999998 45677777777611 0 112222222344677788999
Q ss_pred eEEEEEeccCCc
Q 001391 441 YLYHTKLCDMDS 452 (1088)
Q Consensus 441 ~i~~~~~~~~~~ 452 (1088)
.++.|++.+...
T Consensus 250 ~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 250 KVYFWDLVDETQ 261 (307)
T ss_pred eEEEEEecccee
Confidence 999888776543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=249.20 Aligned_cols=285 Identities=19% Similarity=0.287 Sum_probs=227.3
Q ss_pred EEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 59 ~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
.+..++...|.++.|+ ++|+ .+++++.++.+++|+..... ..+.+.+.+|...|.++
T Consensus 153 ~~~~~~~~sv~~~~fs-------~~g~---~l~~~~~~~~i~~~~~~~~~-------------~~~~~~l~~h~~~v~~~ 209 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFS-------PDGR---ALAAASSDGLIRIWKLEGIK-------------SNLLRELSGHTRGVSDV 209 (456)
T ss_pred eecccccCceEEEEEc-------CCCC---eEEEccCCCcEEEeeccccc-------------chhhccccccccceeee
Confidence 3444445679999999 8883 44444569999999995321 13566678999999999
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEc-CCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcccc
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~-~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~ 217 (1088)
+|+| +++++++++.|++|++||+ ..+..+.++.+|... +++++| ++++.++++|+.|++|+|||++
T Consensus 210 ~fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~-v~~~~f---~p~g~~i~Sgs~D~tvriWd~~------ 276 (456)
T KOG0266|consen 210 AFSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY-VTSVAF---SPDGNLLVSGSDDGTVRIWDVR------ 276 (456)
T ss_pred EECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-eEEEEe---cCCCCEEEEecCCCcEEEEecc------
Confidence 9999 9999999999999999999 555888888877654 578887 6788999999999999999999
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCce
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 297 (1088)
.++++..+.+|.+.|.+++|++++.+|++++.|+.|++||+.++.. .
T Consensus 277 ---------------------------~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~------~ 323 (456)
T KOG0266|consen 277 ---------------------------TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK------L 323 (456)
T ss_pred ---------------------------CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce------e
Confidence 7889999999999999999999999999999999999999999752 1
Q ss_pred eeeceeeeccCc--ceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCC--CeEEEEEcCCCCEEEEEeCCC
Q 001391 298 EVGSSVLYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 298 ~i~~~~~~~h~~--~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~--~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+.. .+.++.. .+++++|+ +.++++++.|+++++||+ .++.+..+.+|... .+.+...++.+.++++|+.|+
T Consensus 324 ~~~--~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 324 CLK--LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred eee--cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCc
Confidence 222 4555544 49999998 689999999999999999 68889999998874 344555678999999999999
Q ss_pred CEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec---CCeEE
Q 001391 371 AIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN---HGYLY 443 (1088)
Q Consensus 371 ~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~---~g~i~ 443 (1088)
.|.+|++.. ..++.+++|. ...+..+.+++...+++... ++.+.
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~-----------------------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHS-----------------------------KAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred eEEEEeCCccchhhhhcCCC-----------------------------CCceeccccCCCcCeeeecCcCCCceEE
Confidence 999999963 3344444331 24567777777766666543 44454
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=226.76 Aligned_cols=279 Identities=16% Similarity=0.258 Sum_probs=222.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC---eeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|...|.-+.|| ++ |+|||+++ |.+..||++... ++.+++.+|.. +|.-|.|| ||.+ .++
T Consensus 223 htdEVWfl~FS--~n----GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~-~V~yi~wS-------PDdr---yLl 285 (519)
T KOG0293|consen 223 HTDEVWFLQFS--HN----GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-PVSYIMWS-------PDDR---YLL 285 (519)
T ss_pred CCCcEEEEEEc--CC----CeeEeeccCCceEEEEEEecCcceeeeeeeecccC-ceEEEEEC-------CCCC---eEE
Confidence 67889999999 99 99999999 799999997543 45677787666 89999999 7762 555
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeec-cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
+|+-+..+++||+.++. +...+ .+|...+.+++|.| ||..+++|+.|+++..||+... .+
T Consensus 286 aCg~~e~~~lwDv~tgd---------------~~~~y~~~~~~S~~sc~W~p---Dg~~~V~Gs~dr~i~~wdlDgn-~~ 346 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGD---------------LRHLYPSGLGFSVSSCAWCP---DGFRFVTGSPDRTIIMWDLDGN-IL 346 (519)
T ss_pred ecCchHheeeccCCcch---------------hhhhcccCcCCCcceeEEcc---CCceeEecCCCCcEEEecCCcc-hh
Confidence 55558889999998753 22222 24568899999999 9999999999999999999643 33
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
...++-....++.+++ .+||..+++.+.|..|++++.+ ....+.
T Consensus 347 ~~W~gvr~~~v~dlai---t~Dgk~vl~v~~d~~i~l~~~e---------------------------------~~~dr~ 390 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAI---TYDGKYVLLVTVDKKIRLYNRE---------------------------------ARVDRG 390 (519)
T ss_pred hcccccccceeEEEEE---cCCCcEEEEEecccceeeechh---------------------------------hhhhhc
Confidence 3333333345677776 6789999999999999999987 222221
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc--eEEEEEC---CCEEEEEe
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCCLT---DSFIITAG 325 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~--I~~v~~~---~~~l~sg~ 325 (1088)
+..-..+|++...|.+++++++--.+..+++||+.... .+. ...||... |-.-||. ..++++|+
T Consensus 391 -lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~--------lv~--kY~Ghkq~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 391 -LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK--------LVR--KYFGHKQGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred -cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh--------HHH--HhhcccccceEEEeccCCCCcceEEecC
Confidence 22345789999999999999999999999999999743 332 67787654 4445565 37999999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~ 378 (1088)
+|+.|+||+. +|+++..+.+|.. .|.+++|+|.. ..+|++|.||+||||.+.
T Consensus 460 ED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999 9999999999998 79999999965 479999999999999874
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=248.47 Aligned_cols=273 Identities=23% Similarity=0.367 Sum_probs=234.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEE-EeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP-FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~-~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+...+.+..|. ..++.+|. +++|++||..++..+.. +.+|.+ .|.++++. ..+ +.++..
T Consensus 207 ~~~~~~~~q~~--------~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~~-------~~~---~~lvsg 267 (537)
T KOG0274|consen 207 DDHVVLCLQLH--------DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAFP-------SGG---DKLVSG 267 (537)
T ss_pred Ccchhhhheee--------cCeEEecCCCceeEEeecccceEEEeeccCCCC-CceeEEEe-------cCC---CEEEEE
Confidence 34557788887 45788888 69999999999999888 999887 79999996 322 155555
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+.|+++++||..+ .++.+.+.+|.+.|.++...+ .++++|+.|.+|++|++.++..+..+
T Consensus 268 S~D~t~rvWd~~s---------------g~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 268 STDKTERVWDCST---------------GECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred ecCCcEEeEecCC---------------CcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEe
Confidence 6699999999775 578999999999999999854 77889999999999999999999998
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.+| ...+.++.+ ++.++++|+.|++|++||+. ++++++.+.
T Consensus 328 ~~h-~~~V~~v~~-----~~~~lvsgs~d~~v~VW~~~---------------------------------~~~cl~sl~ 368 (537)
T KOG0274|consen 328 RGH-TGPVNCVQL-----DEPLLVSGSYDGTVKVWDPR---------------------------------TGKCLKSLS 368 (537)
T ss_pred ccc-cccEEEEEe-----cCCEEEEEecCceEEEEEhh---------------------------------hceeeeeec
Confidence 874 445667765 47899999999999999999 899999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vW 333 (1088)
||.+.|.++.+.+. ..+++|+.|++|++||+.+.. +++. ++.+|..-+..+.+.+++|++++.|++|++|
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-------~c~~--tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-------KCIH--TLQGHTSLVSSLLLRDNFLVSSSADGTIKLW 438 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-------hhhh--hhcCCcccccccccccceeEeccccccEEEe
Confidence 99999999988766 899999999999999999951 3443 8999999999999999999999999999999
Q ss_pred cC-CCceeEEEcc-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 334 GS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 334 d~-~~~~~~~~~~-h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|. ++++++++.+ |.+ +|+.+++. ...+++++.||++++||++.
T Consensus 439 D~~~~~~~~~~~~~~~~-~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 439 DAEEGECLRTLEGRHVG-GVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ecccCceeeeeccCCcc-cEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99 8999999988 556 69888876 45789999999999999954
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-23 Score=259.69 Aligned_cols=320 Identities=14% Similarity=0.199 Sum_probs=232.1
Q ss_pred CCeEEEEECCCCeeEEEEee----eCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCc
Q 001391 43 GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPE 117 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~----~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~ 117 (1088)
+|.+++|+..+.+....+.. .+...|.+++|+ |++ .+++++ .|+.|+||++.........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs-------~dg----~~latgg~D~~I~iwd~~~~~~~~~~---- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD-------RDG----EFFATAGVNKKIKIFECESIIKDGRD---- 521 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEEC-------CCC----CEEEEEeCCCEEEEEECCcccccccc----
Confidence 46788888877655444332 134579999999 777 455554 4999999998632100000
Q ss_pred cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 118 ~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.......+. +...|.+++|+| .++.+|++++.|++|++||+.+++.+..+..|.. .++++.+. ..++.+|+
T Consensus 522 ---~~~~~~~~~-~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~--p~~~~~L~ 592 (793)
T PLN00181 522 ---IHYPVVELA-SRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYS--SADPTLLA 592 (793)
T ss_pred ---cccceEEec-ccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-CEEEEEEc--CCCCCEEE
Confidence 011122233 346799999987 2467999999999999999999988888876654 47777773 23678999
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc-CCCCEEEEEEC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVSD 276 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s-p~g~~l~s~s~ 276 (1088)
+|+.||.|++||+. .+..+..+..| ..|.++.|+ +++.++++|+.
T Consensus 593 Sgs~Dg~v~iWd~~---------------------------------~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 593 SGSDDGSVKLWSIN---------------------------------QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EEcCCCEEEEEECC---------------------------------CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 99999999999998 55556666654 679999995 57899999999
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCC-------CceeEEEcccCC
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSD-------GKQLKMIKEHIG 348 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~-------~~~~~~~~~h~~ 348 (1088)
|+.|++||+...+. .+. .+.+|...|.++.|. +.+|++++.|++|++||+. .+++..+.+|..
T Consensus 639 dg~I~iwD~~~~~~-------~~~--~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 639 DHKVYYYDLRNPKL-------PLC--TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred CCeEEEEECCCCCc-------cce--EecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 99999999987421 222 677999999999997 7899999999999999983 256788999988
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCcc-ceeeccCCCCceEEEEe
Q 001391 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE-QIRLTDSKSEYVRCLHL 427 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~l~~ 427 (1088)
.+..++|++++.+|++|+.|+.|++|+...... ++......... .-.....+...|++++|
T Consensus 710 -~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~V~~v~w 771 (793)
T PLN00181 710 -VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP-----------------VLSYKFKTIDPVSGLEVDDASQFISSVCW 771 (793)
T ss_pred -CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc-----------------eEEEecccCCcccccccCCCCcEEEEEEE
Confidence 699999999999999999999999999743210 00000000000 00012334567999999
Q ss_pred ccCCeE-EEEecCCeEEEEEe
Q 001391 428 TSEDTL-YIATNHGYLYHTKL 447 (1088)
Q Consensus 428 s~~~~l-l~~t~~g~i~~~~~ 447 (1088)
++++.. ++++.+|.|..|++
T Consensus 772 s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCeEEEecCCCcEEEEec
Confidence 998854 55567788875543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=223.33 Aligned_cols=294 Identities=16% Similarity=0.207 Sum_probs=219.3
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+..+.+..|.+.|.-+.||++|++|||++.|.+..+|++..... .+... ++.+|..+|..+.|+ +.+++++
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----~kl~~--tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----FKLKK--TLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----eeeee--eeecccCceEEEEECCCCCeEEec
Confidence 33455778999999999999999999999999999999876533 23343 899999999999999 5799999
Q ss_pred eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEe
Q 001391 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1088)
+.|-.+++||. +|.....+....+..+.+++|.|||..+++|+.|+++..||+++..+...++..
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-------------- 353 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-------------- 353 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc--------------
Confidence 99999999999 777776664333447999999999999999999999999999876443333211
Q ss_pred eeCCCccceeeccCCCCceEEEEeccCCeE-EEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCC
Q 001391 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1088)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~V~~l~~s~~~~l-l~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1088)
...|.+++.++||+. ++.+.+..+..++...... ..+ ..+..+|.+..++.
T Consensus 354 ---------------~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---r~l--ise~~~its~~iS~-------- 405 (519)
T KOG0293|consen 354 ---------------DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---RGL--ISEEQPITSFSISK-------- 405 (519)
T ss_pred ---------------cceeEEEEEcCCCcEEEEEecccceeeechhhhhh---hcc--ccccCceeEEEEcC--------
Confidence 135889999999954 4556677776544333222 112 23355788887744
Q ss_pred CCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecC-CCeEEEEECCCCeEEEEecCCCCCcccc
Q 001391 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~L~s~~~dg~i~vwd~~~~~~~~~~ 561 (1088)
++.++++.-.+..+.+||+....+..+ +..+ +.+ ...+-.||.- +.+++++|+.|+.|++|+...++
T Consensus 406 d~k~~LvnL~~qei~LWDl~e~~lv~k----Y~Gh--kq~-~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk----- 473 (519)
T KOG0293|consen 406 DGKLALVNLQDQEIHLWDLEENKLVRK----YFGH--KQG-HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK----- 473 (519)
T ss_pred CCcEEEEEcccCeeEEeecchhhHHHH----hhcc--ccc-ceEEEeccCCCCcceEEecCCCceEEEEEccCCc-----
Confidence 458888888999999999985443322 1111 111 1122246654 55899999999999999988653
Q ss_pred cCCcccceeeeeeeccccCceEEEEEeeeC-CCEEEEEcCCCcEEEEeCCc
Q 001391 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 562 ~~~~~~~~~l~~~~~~~h~~~It~l~~spd-g~~LatGs~dg~I~Iw~~~~ 611 (1088)
+.+. ..+|...|+|++|+|. -.++|+|+.||+|+||....
T Consensus 474 ---------ll~~-LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 474 ---------LLAV-LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---------eeEe-ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 2333 4589999999999995 45899999999999998764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-23 Score=226.15 Aligned_cols=282 Identities=20% Similarity=0.345 Sum_probs=224.6
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeE
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I 205 (1088)
+.+.+|.+.|.+++|+| ++++|++++.||.|++|++.+++....+..+... +..+.+ .+++..+++++.+|.|
T Consensus 3 ~~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-i~~~~~---~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAA---SADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc-eeEEEE---CCCCCEEEEEcCCCeE
Confidence 45679999999999999 9999999999999999999988777666655443 334444 4667899999999999
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~ 285 (1088)
++|++. ..+.+..+..|...|.++.|+|+++++++++.|+.+++||+
T Consensus 76 ~i~~~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 76 RLWDLE---------------------------------TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEEEcC---------------------------------cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 999998 55667778899999999999999989999988999999999
Q ss_pred CCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCE
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~ 362 (1088)
.+. +... .+..|...|.+++|++ .++++++.|+.+++||+ .++.+..+..|.. .|.+++|+|+++.
T Consensus 123 ~~~--------~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~ 191 (289)
T cd00200 123 ETG--------KCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEK 191 (289)
T ss_pred CCc--------EEEE--EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCE
Confidence 864 2332 5567888999999984 67777777999999999 5788888888887 6999999999999
Q ss_pred EEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec-CC
Q 001391 363 LVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HG 440 (1088)
Q Consensus 363 l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~-~g 440 (1088)
+++++.|+.|++||+.. ..+. .+..+...+.+++|++++.++++.. +|
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLG------------------------------TLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEEecCCCcEEEEECCCCceec------------------------------chhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999999953 1111 1123345789999999888888777 89
Q ss_pred eEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 441 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
.+..+++..... ..... .+...+.++++.+. +..+++++.||.+++|+
T Consensus 242 ~i~i~~~~~~~~---~~~~~-~~~~~i~~~~~~~~--------~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGEC---VQTLS-GHTNSVTSLAWSPD--------GKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCcee---EEEcc-ccCCcEEEEEECCC--------CCEEEEecCCCeEEecC
Confidence 898766543221 22223 23457888887554 47999999999999995
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=215.04 Aligned_cols=295 Identities=17% Similarity=0.211 Sum_probs=222.4
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEE
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd 209 (1088)
.|.+||.++...+ +.|+||+.||.+++||. .|+...++.++... +.++.++..++....+++++.|.++++|.
T Consensus 103 ~hdDWVSsv~~~~-----~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~-ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS-----KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP-IKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cchhhhhhhcccC-----ceEEEeecCCeeEEEec-CCceEEEEecCCcc-eeeeEEEecCCccceEEEecCCceEEEEE
Confidence 5899999998854 79999999999999997 56777777777654 34455544445556899999999999999
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
++.++. ....+....||+..|-+|+..++|..++++|.|.+++||+.....
T Consensus 176 ~~~~~~-----------------------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~ 226 (423)
T KOG0313|consen 176 WNVGEN-----------------------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE 226 (423)
T ss_pred ecCchh-----------------------------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc
Confidence 982221 223344455999999999999999999999999999999943321
Q ss_pred cc-----------------CCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCC
Q 001391 290 WK-----------------DSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1088)
Q Consensus 290 ~~-----------------~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~ 350 (1088)
.. ......++ ..+.||..+|.++.|. ...+++++.|.+|++||+ .+..+..+.+.. +
T Consensus 227 ~~~~E~~s~~rrk~~~~~~~~~~r~P~--vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--s 302 (423)
T KOG0313|consen 227 EDELESSSNRRRKKQKREKEGGTRTPL--VTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--S 302 (423)
T ss_pred cccccccchhhhhhhhhhhcccccCce--EEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCc--c
Confidence 11 00001122 4788999999999999 688999999999999999 788777776654 6
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
+.++.++|..++|++|+.|..|++||.+.. ...-....+-+|..+|.++.++|.
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~irl~DPR~~--------------------------~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRHIRLWDPRTG--------------------------DGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred eeEeecccccceeeecCCCCceeecCCCCC--------------------------CCceeEEeeecchhhhhheecCCC
Confidence 999999999999999999999999999642 111123345578889999999996
Q ss_pred C--eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 431 D--TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 431 ~--~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
+ .++.++.++.+..|++.......+ .+.+| ...+.++++.. +..|++|+.|.+|+|+.-.
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~ply--dI~~h-~DKvl~vdW~~---------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLY--DIAGH-NDKVLSVDWNE---------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcce--eeccC-CceEEEEeccC---------CceEEeccCcceEEEeccc
Confidence 6 566667888888666655442211 22333 56677776633 4699999999999998643
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=231.69 Aligned_cols=286 Identities=15% Similarity=0.171 Sum_probs=227.0
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
+.++++.+|.. .|.++.|.|. .+ .+|+++| |+.|+||++... ..+++++.+|..
T Consensus 205 k~~~~~~gH~k-gvsai~~fp~------~~----hLlLS~gmD~~vklW~vy~~--------------~~~lrtf~gH~k 259 (503)
T KOG0282|consen 205 KLSHNLSGHTK-GVSAIQWFPK------KG----HLLLSGGMDGLVKLWNVYDD--------------RRCLRTFKGHRK 259 (503)
T ss_pred hheeeccCCcc-ccchhhhccc------ee----eEEEecCCCceEEEEEEecC--------------cceehhhhcchh
Confidence 45778888776 6999999942 44 5666666 999999999863 479999999999
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.|.+++|++ +|..+.|++-|+.|++||+++|+++..++. ++..+++.+++.+ .+.+++|+.|+.|+.||++
T Consensus 260 ~Vrd~~~s~---~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiR-- 330 (503)
T KOG0282|consen 260 PVRDASFNN---CGTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIR-- 330 (503)
T ss_pred hhhhhhccc---cCCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCC--CcEEEEecCCCcEEEEecc--
Confidence 999999999 999999999999999999999999998854 4456777775432 4889999999999999999
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
.++.++....|-+.|..+.|-++|++++++++|++++||+....-
T Consensus 331 -------------------------------s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v---- 375 (503)
T KOG0282|consen 331 -------------------------------SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV---- 375 (503)
T ss_pred -------------------------------chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc----
Confidence 677788888899999999999999999999999999999998853
Q ss_pred CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC----CceeEEEcccCCC-CeEEEEEcCCCCEEEEE
Q 001391 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGR-GIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 294 ~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~----~~~~~~~~~h~~~-~V~~l~~~~dg~~l~tg 366 (1088)
.++ .....+.-...++..+ +..++.-+.|..|.++.+. ....+.+++|... --..+.|+|||.+|++|
T Consensus 376 ----~ik-~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 376 ----PIK-NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred ----cch-hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 222 1223333334455555 6899999999999999972 2334567777642 23468899999999999
Q ss_pred eCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC--eEEEEecCCeEE
Q 001391 367 GFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLY 443 (1088)
Q Consensus 367 ~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~--~ll~~t~~g~i~ 443 (1088)
..||.+.+||.++ ++ +..+..|++.+..+.|.|.. +++.++-+|.|.
T Consensus 451 dsdG~v~~wdwkt~kl------------------------------~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTKL------------------------------VSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred cCCccEEEeechhhhh------------------------------hhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 9999999999954 22 22344556778899999854 666667778776
Q ss_pred E
Q 001391 444 H 444 (1088)
Q Consensus 444 ~ 444 (1088)
.
T Consensus 501 i 501 (503)
T KOG0282|consen 501 I 501 (503)
T ss_pred e
Confidence 3
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=203.56 Aligned_cols=283 Identities=20% Similarity=0.298 Sum_probs=210.1
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEE------ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL------FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~------~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
.+++++ .+++|||. -+++ ..+|+ .|.|++.|.++..+. ......++. -.+
T Consensus 6 tpgf~G---ysvqfSPf-----~~nr---LavAt~q~yGl~G~G~L~ile~~~~~------------gi~e~~s~d-~~D 61 (311)
T KOG0277|consen 6 TPGFHG---YSVQFSPF-----VENR---LAVATAQHYGLAGNGRLFILEVTDPK------------GIQECQSYD-TED 61 (311)
T ss_pred cCCccc---ceeEeccc-----ccch---hheeehhhcccccCceEEEEecCCCC------------CeEEEEeee-ccc
Confidence 344555 67899976 2321 22333 346889999986222 133444443 457
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
...+++|++. ....+++++.||++++||+... ..+..++.|.+ .++++.+ ...+...+++++.|++|++|+..
T Consensus 62 ~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~- 135 (311)
T KOG0277|consen 62 GLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-EVYSVDW--NTVRRRIFLTSSWDGTIKLWDPN- 135 (311)
T ss_pred ceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhh-heEEecc--ccccceeEEeeccCCceEeecCC-
Confidence 8999999982 4457888999999999996533 44666666655 4777765 23456778888999999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCccc
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
....+.++.||...|...+|+| ....++++|.|+++++||++....
T Consensus 136 --------------------------------r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk- 182 (311)
T KOG0277|consen 136 --------------------------------RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK- 182 (311)
T ss_pred --------------------------------CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-
Confidence 6778889999999999999999 467899999999999999987522
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCC-CEEEE
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVT 365 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~t 365 (1088)
. ..+..|...|.++.|+ +..++||+.|+.||+||+ -..++..+.+|.- .|..+.|+|.. .+|++
T Consensus 183 ------~---~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~lLaS 252 (311)
T KOG0277|consen 183 ------F---MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASLLAS 252 (311)
T ss_pred ------e---eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce-EEEEEecCcchhhHhhh
Confidence 2 2577899999999998 689999999999999999 3567888999988 79999999965 58999
Q ss_pred EeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC-CeEEEE-ecCCeEE
Q 001391 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIA-TNHGYLY 443 (1088)
Q Consensus 366 g~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~ll~~-t~~g~i~ 443 (1088)
++.|-+++|||...+. ..++..+.|.+.+..+.|++- ...++. +-++.++
T Consensus 253 asYDmT~riw~~~~~d----------------------------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 253 ASYDMTVRIWDPERQD----------------------------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred ccccceEEecccccch----------------------------hhhhhhhccceEEeccccccccCceeeeccccccee
Confidence 9999999999985310 112223456677888888873 344444 4455565
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=236.14 Aligned_cols=316 Identities=17% Similarity=0.245 Sum_probs=204.9
Q ss_pred eeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 124 LVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 124 ~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
..+.+. .|.+.|+++.|++ ||+|||+||.|+.|+||.+...+....-.....++...++ .++..-.+....
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~-----~~s~~~p~~s~~ 329 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN-----ANSQIEPSTSSE 329 (712)
T ss_pred EeeccccccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh-----hccccCcccccc
Confidence 445566 8999999999999 9999999999999999999765442111111111111110 000000000000
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
+.+. + .......+.......+......-..++++.+.||.+.|..|.|+.+ .+|+|+|.|++|||
T Consensus 330 ~~~~----------~----~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRL 394 (712)
T KOG0283|consen 330 EKIS----------S----RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRL 394 (712)
T ss_pred cccc----------c----cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEe
Confidence 0000 0 0000000000000011111111256788999999999999999976 68999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
|++....+ + ..+.|...|+|++|+ +++|++|+-||.||||++..+.+.....-.. -|++++|.||
T Consensus 395 Wh~~~~~C--------L---~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~Pd 462 (712)
T KOG0283|consen 395 WHPGRKEC--------L---KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPD 462 (712)
T ss_pred ecCCCcce--------e---eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccC
Confidence 99998644 3 678899999999998 5899999999999999996665555544444 6999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecC
Q 001391 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~ 439 (1088)
|++.+.|+.+|.+++|+..+..++ ...
T Consensus 463 Gk~avIGt~~G~C~fY~t~~lk~~---------------------------------------~~~-------------- 489 (712)
T KOG0283|consen 463 GKGAVIGTFNGYCRFYDTEGLKLV---------------------------------------SDF-------------- 489 (712)
T ss_pred CceEEEEEeccEEEEEEccCCeEE---------------------------------------Eee--------------
Confidence 999999999999999998542110 000
Q ss_pred CeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeecc
Q 001391 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG 519 (1088)
Q Consensus 440 g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~ 519 (1088)
.+++...+. .. ...|+.+.+.+.. .+.+++.+.|..|+|||..+..+..+. +....
T Consensus 490 ----~I~~~~~Kk--------~~-~~rITG~Q~~p~~-------~~~vLVTSnDSrIRI~d~~~~~lv~Kf----KG~~n 545 (712)
T KOG0283|consen 490 ----HIRLHNKKK--------KQ-GKRITGLQFFPGD-------PDEVLVTSNDSRIRIYDGRDKDLVHKF----KGFRN 545 (712)
T ss_pred ----eEeeccCcc--------cc-CceeeeeEecCCC-------CCeEEEecCCCceEEEeccchhhhhhh----ccccc
Confidence 000111111 11 1256677665542 346788888999999998665544332 22222
Q ss_pred ccceeeeEEEeecCCCeEEEEECCCCeEEEEecCC
Q 001391 520 IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (1088)
Q Consensus 520 ~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~ 554 (1088)
...++. ..++.||+++++++.|..|++|+.+.
T Consensus 546 ~~SQ~~---Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 546 TSSQIS---ASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCccee---eeEccCCCEEEEeecCceEEEEeCCC
Confidence 233333 45778999999999999999999874
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=199.69 Aligned_cols=278 Identities=14% Similarity=0.186 Sum_probs=220.0
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
.+.|.+|.|+ ++ |.+|++++ |.+|+|||+.+|+.++++..++- .|..++|. ...+ .++.++.
T Consensus 14 ~~~i~sl~fs--~~----G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Ft-------h~~~---~~i~sSt 76 (311)
T KOG1446|consen 14 NGKINSLDFS--DD----GLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFT-------HHSN---TVIHSST 76 (311)
T ss_pred CCceeEEEec--CC----CCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEe-------cCCc---eEEEccC
Confidence 4679999999 88 88888876 68999999999999999998554 69999997 3321 5555554
Q ss_pred --CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 96 --EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 96 --d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
|.+||..++.. .+.++.+.||.+.|.+++.+| -++.+++++.|++|++||++..++...+
T Consensus 77 k~d~tIryLsl~d---------------NkylRYF~GH~~~V~sL~~sP---~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 77 KEDDTIRYLSLHD---------------NKYLRYFPGHKKRVNSLSVSP---KDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred CCCCceEEEEeec---------------CceEEEcCCCCceEEEEEecC---CCCeEEecccCCeEEeeEecCCCCceEE
Confidence 89999999985 579999999999999999999 7789999999999999999988877666
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
....+.+ ++ ++|+|.++|++...+.|++||++.- ...+...+.
T Consensus 139 ~~~~~pi---~A---fDp~GLifA~~~~~~~IkLyD~Rs~-------------------------------dkgPF~tf~ 181 (311)
T KOG1446|consen 139 NLSGRPI---AA---FDPEGLIFALANGSELIKLYDLRSF-------------------------------DKGPFTTFS 181 (311)
T ss_pred ecCCCcc---ee---ECCCCcEEEEecCCCeEEEEEeccc-------------------------------CCCCceeEc
Confidence 5444332 22 2799999999988889999999821 122333332
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc---eEEEEEC--CCEEEEEe
Q 001391 254 ---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR---VWDCCLT--DSFIITAG 325 (1088)
Q Consensus 254 ---gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~---I~~v~~~--~~~l~sg~ 325 (1088)
+-......|.|+|||++++.+...+.+.+.|.-++.. .. .+.++... -...+|. ++++++|+
T Consensus 182 i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~--------~~--tfs~~~~~~~~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV--------KS--TFSGYPNAGNLPLSATFTPDSKFVLSGS 251 (311)
T ss_pred cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE--------ee--eEeeccCCCCcceeEEECCCCcEEEEec
Confidence 4467789999999999999999999999999988643 22 33343322 2566776 58999999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.||+|.+|++ +|+.+..+++....++.++.|+|.-..++++ +..+.+|-..
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 9999999999 8999999988433379999999987666665 5678888664
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-23 Score=218.17 Aligned_cols=280 Identities=16% Similarity=0.251 Sum_probs=224.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
...+|++++|+ |. .... +|+.+.-.+.||+..+...+.++.-|+. .|.++.|. .|| .++|+++
T Consensus 25 e~~~vssl~fs--p~--~P~d-~aVt~S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR-------~DG----~LlaaGD 87 (487)
T KOG0310|consen 25 EHNSVSSLCFS--PK--HPYD-FAVTSSVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFR-------SDG----RLLAAGD 87 (487)
T ss_pred ccCcceeEecC--CC--CCCc-eEEecccEEEEEecchhhhhhhHHhhcc-ceeEEEee-------cCC----eEEEccC
Confidence 45789999999 86 2222 4444456799999998888887877777 69999999 898 7777777
Q ss_pred -CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 96 -d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|.|+|+|+.+ -..++.+.+|+.+|..+.|+| .++..+++|+.|+.+++||+.+......+.
T Consensus 88 ~sG~V~vfD~k~---------------r~iLR~~~ah~apv~~~~f~~--~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 88 ESGHVKVFDMKS---------------RVILRQLYAHQAPVHVTKFSP--QDNTMLVSGSDDKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred CcCcEEEecccc---------------HHHHHHHhhccCceeEEEecc--cCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence 69999999653 246778899999999999999 356688999999999999999998766777
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|+. .+-+.++. +.++.++++|+.||.|++||.+. ....+.++ .
T Consensus 151 ~htD-YVR~g~~~--~~~~hivvtGsYDg~vrl~DtR~--------------------------------~~~~v~el-n 194 (487)
T KOG0310|consen 151 GHTD-YVRCGDIS--PANDHIVVTGSYDGKVRLWDTRS--------------------------------LTSRVVEL-N 194 (487)
T ss_pred CCcc-eeEeeccc--cCCCeEEEecCCCceEEEEEecc--------------------------------CCceeEEe-c
Confidence 6654 34444443 34567999999999999999981 12444444 5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|..+|-.+.+.|.|..+++++.. .|++||+.++. +.+. ....|...|+|+++. +..|++|+-|+.+++
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~-------qll~--~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGG-------QLLT--SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCc-------eehh--hhhcccceEEEEEeecCCceEeecccccceEE
Confidence 99999999999999999999875 79999999763 3332 445599999999998 589999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
||+ +-+.+..+... + +|.+++++|+++.++.|..||.+.+-+.
T Consensus 265 fd~t~~Kvv~s~~~~-~-pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 265 FDTTNYKVVHSWKYP-G-PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEccceEEEEeeecc-c-ceeeEEecCCCceEEEecccceeeeehh
Confidence 998 66777777654 4 7999999999999999999998877643
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=228.85 Aligned_cols=270 Identities=17% Similarity=0.291 Sum_probs=216.8
Q ss_pred CCEEEEEe-CCeEEEEECCCC------eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAG------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFE 107 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg------~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~ 107 (1088)
++||.+|+ ||.|++|+...- ..+.+++.|.. .|..+... .+++ .++.++.|-+|++|+....
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-WVNDiiL~-------~~~~---tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-WVNDIILC-------GNGK---TLISASSDTTVKVWNAHKD 105 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-HHhhHHhh-------cCCC---ceEEecCCceEEEeecccC
Confidence 67899988 899999997532 24677787666 68888877 5553 6778888999999998854
Q ss_pred CCCCCCCCCccccccceeeeccCCCCcEEEEEE-ecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEE--------eccC
Q 001391 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF-LKVCNGNRSLAIGCSDNSIRVWDISNSS--IILE--------VHSP 176 (1088)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f-~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~--------~~~~ 176 (1088)
. --+..++..|.+.|.|+++ .+ +..++|+||-|+.|.+||++++. .+.+ +..+
T Consensus 106 ~-------------~~c~stir~H~DYVkcla~~ak---~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 106 N-------------TFCMSTIRTHKDYVKCLAYIAK---NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred c-------------chhHhhhhcccchheeeeeccc---CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 3 2567788899999999999 66 88899999999999999999873 2222 2224
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
....+|+++. .+.+..|++|+..+.|++||.+ +.+.+..++||+
T Consensus 170 ~k~siYSLA~---N~t~t~ivsGgtek~lr~wDpr---------------------------------t~~kimkLrGHT 213 (735)
T KOG0308|consen 170 PKDSIYSLAM---NQTGTIIVSGGTEKDLRLWDPR---------------------------------TCKKIMKLRGHT 213 (735)
T ss_pred Cccceeeeec---CCcceEEEecCcccceEEeccc---------------------------------cccceeeeeccc
Confidence 4566888876 5777899999999999999999 778888899999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEc
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWG 334 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd 334 (1088)
..|..+..++||..++|+|.||+|++||+... +++. ++..|...||++..++ .++++|+.||.|..=|
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--------rCl~--T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--------RCLA--TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeecccc--------ceee--eEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 99999999999999999999999999999885 4554 7889999999999985 6899999999999988
Q ss_pred CCC-ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 335 SDG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 335 ~~~-~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.. .....+-.... +|..+..+...+-+-++..|+.|+-|...
T Consensus 284 l~n~~~~tlick~da-Pv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDA-PVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred cCCchhheEeecCCC-chhhhhhccccCCceeeeccccceecCCc
Confidence 833 22222222222 68888887555555777889999999774
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=233.48 Aligned_cols=277 Identities=21% Similarity=0.312 Sum_probs=223.5
Q ss_pred eeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeee-ccCCCCcEEEEE
Q 001391 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDVC 139 (1088)
Q Consensus 61 ~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~I~~v~ 139 (1088)
.+++...+.+..|. ++ .++..+.+++|++|+... ...+.. +.||.+.|++++
T Consensus 204 ~~~~~~~~~~~q~~--------~~----~~~~~s~~~tl~~~~~~~---------------~~~i~~~l~GH~g~V~~l~ 256 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH--------DG----FFKSGSDDSTLHLWDLNN---------------GYLILTRLVGHFGGVWGLA 256 (537)
T ss_pred cccCcchhhhheee--------cC----eEEecCCCceeEEeeccc---------------ceEEEeeccCCCCCceeEE
Confidence 33344456666665 22 666677799999999885 345555 999999999999
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCC
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
+.. .+.+|++|+.|.++++||..++++...+.++... +..+. .....+++|+.|.+|++|++.
T Consensus 257 ~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st-v~~~~-----~~~~~~~sgs~D~tVkVW~v~-------- 319 (537)
T KOG0274|consen 257 FPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS-VRCLT-----IDPFLLVSGSRDNTVKVWDVT-------- 319 (537)
T ss_pred Eec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCce-EEEEE-----ccCceEeeccCCceEEEEecc--------
Confidence 976 6889999999999999999999999999877543 44443 346688889999999999998
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceee
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
.+..+..+.+|.++|+++..+ +.++++|+.|++|++||+.+. +++
T Consensus 320 -------------------------n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~--------~cl 364 (537)
T KOG0274|consen 320 -------------------------NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG--------KCL 364 (537)
T ss_pred -------------------------CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc--------eee
Confidence 788899999999999999997 889999999999999999974 566
Q ss_pred eceeeeccCcceEEEEECC-CEEEEEeCCCcEEEEcC-CC-ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 300 GSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg~i~vWd~-~~-~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
. .+.+|..+|.++.+.+ ..+++|+.|++|++||+ +. +++.++.+|.. -+..+.+ .+++|++++.|++|++||
T Consensus 365 ~--sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 365 K--SLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWD 439 (537)
T ss_pred e--eecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEee
Confidence 5 8999999999999998 99999999999999999 55 68999999987 4655444 567899999999999999
Q ss_pred cC-CCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCC
Q 001391 377 FQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 377 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~ 451 (1088)
.. +++++++++. +...|..+++. +..+++++.+|.+..+++....
T Consensus 440 ~~~~~~~~~~~~~-----------------------------~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 440 AEEGECLRTLEGR-----------------------------HVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred cccCceeeeeccC-----------------------------CcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence 84 3444433321 22456777766 4588899999999876655443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-24 Score=225.78 Aligned_cols=281 Identities=18% Similarity=0.254 Sum_probs=223.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|...|+++.|. |- .+.||++|+ |+.|+|||+-. ++++++|.+|.. .|..++|+ ++|. .+|.+
T Consensus 213 H~kgvsai~~f--p~---~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k-~Vrd~~~s-------~~g~---~fLS~ 276 (503)
T KOG0282|consen 213 HTKGVSAIQWF--PK---KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK-PVRDASFN-------NCGT---SFLSA 276 (503)
T ss_pred Cccccchhhhc--cc---eeeEEEecCCCceEEEEEEecCcceehhhhcchh-hhhhhhcc-------ccCC---eeeee
Confidence 55779999999 83 378999988 89999999876 899999999776 79999999 7773 55666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
+-|+.+++||.+++ +....+. -...++|+.|+| ++ +.+++|+.|+.|+.||+++++.+++
T Consensus 277 sfD~~lKlwDtETG---------------~~~~~f~-~~~~~~cvkf~p---d~~n~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 277 SFDRFLKLWDTETG---------------QVLSRFH-LDKVPTCVKFHP---DNQNIFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred ecceeeeeeccccc---------------eEEEEEe-cCCCceeeecCC---CCCcEEEEecCCCcEEEEeccchHHHHH
Confidence 66999999999974 3444332 235689999999 66 7889999999999999999998888
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+..+.+++ ..+.| -+++..+++.+.|++++||+.+ ...++...
T Consensus 338 Yd~hLg~i-~~i~F---~~~g~rFissSDdks~riWe~~---------------------------------~~v~ik~i 380 (503)
T KOG0282|consen 338 YDRHLGAI-LDITF---VDEGRRFISSSDDKSVRIWENR---------------------------------IPVPIKNI 380 (503)
T ss_pred HHhhhhhe-eeeEE---ccCCceEeeeccCccEEEEEcC---------------------------------CCccchhh
Confidence 77776653 34555 3678999999999999999998 22222221
Q ss_pred -eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc--eEEEEEC--CCEEEEEeCC
Q 001391 253 -VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 253 -~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~--I~~v~~~--~~~l~sg~~D 327 (1088)
..+.-...++..+|++++++.-+.|..|.++.+...-. ...- ..+.||... -..+.|+ +.+|++|..|
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-----~nkk--K~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-----LNKK--KRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEecccccc-----cCHh--hhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 22334567889999999999999999999999765321 1111 266777543 4556777 6899999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEE
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd 376 (1088)
|.+.+||. +.+.+..++.|.+ ++..+.|+|.. ..+||+|.||.|++|+
T Consensus 454 G~v~~wdwkt~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 454 GKVNFWDWKTTKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccEEEeechhhhhhhccccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999 7788999999987 79999999965 4799999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=200.68 Aligned_cols=279 Identities=15% Similarity=0.201 Sum_probs=217.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|..|++-|.|. .+ |.+|.++. |.+..||=...|+.+.++.+|.+ .|+++++. -+.+ .++..+
T Consensus 9 HERplTqiKyN--~e----GDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did-------~~s~---~liTGS 71 (327)
T KOG0643|consen 9 HERPLTQIKYN--RE----GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDID-------WDSK---HLITGS 71 (327)
T ss_pred CccccceEEec--CC----CcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEec-------CCcc---eeeecc
Confidence 56899999999 88 89999988 89999999999999999999988 69999998 5542 566667
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-----CCcEEEEEcC----
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDIS---- 165 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-----Dg~V~iWd~~---- 165 (1088)
+|.+++|||++++ +.+..++ ....|..+.|++ +|++++.... .+.|.++|++
T Consensus 72 AD~t~kLWDv~tG---------------k~la~~k-~~~~Vk~~~F~~---~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 72 ADQTAKLWDVETG---------------KQLATWK-TNSPVKRVDFSF---GGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred ccceeEEEEcCCC---------------cEEEEee-cCCeeEEEeecc---CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 7999999999964 4555544 457899999999 8887766543 4579999997
Q ss_pred ---CCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 166 ---NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
..++...+..++.. +.++-+ ++-+..|++|..||.|.+||++
T Consensus 133 ~~~s~ep~~kI~t~~sk-it~a~W---g~l~~~ii~Ghe~G~is~~da~------------------------------- 177 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSK-ITSALW---GPLGETIIAGHEDGSISIYDAR------------------------------- 177 (327)
T ss_pred hhcccCceEEecCCccc-eeeeee---cccCCEEEEecCCCcEEEEEcc-------------------------------
Confidence 34456666666633 333333 5778999999999999999998
Q ss_pred ccce-eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--C
Q 001391 243 QHTA-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S 319 (1088)
Q Consensus 243 ~~~~-~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~ 319 (1088)
++ +.+..-..|+..|+.+.++||..+++|+|.|.+.++||+.+. +.++ .+....+|.+.+++| +
T Consensus 178 --~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl--------~v~K---ty~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 178 --TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL--------EVLK---TYTTERPVNTAAISPLLD 244 (327)
T ss_pred --cCceeeechhhhccccccccccCCcceEEecccCccceeeeccce--------eeEE---Eeeecccccceecccccc
Confidence 43 445555789999999999999999999999999999999984 4443 334456888999884 4
Q ss_pred EEEEE-eCCCc-------------EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 320 FIITA-GEDCT-------------CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 320 ~l~sg-~~Dg~-------------i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.++.| +.+.. .|.|++ -.+.+..+++|-+ ||.+++|+|+|+..++||.||.|+++-.+.
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 44444 43321 122222 1245677899999 899999999999999999999999997743
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=224.08 Aligned_cols=284 Identities=19% Similarity=0.320 Sum_probs=226.9
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE--EeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
.++.+.+.+|...|..+++.+ +..++++|.||++++|+-..++.+. .+..|.+.+..+.++.. .++-.+++|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~----~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g 77 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD----GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVG 77 (745)
T ss_pred ceeEEEeccCccchheeEecC----CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEee
Confidence 467788899999999999864 5579999999999999987666554 45567777777677643 355679999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
+.|.+|.+|... ...++..++||+..|.+++...++. ++|||.|.+
T Consensus 78 ~~D~~i~v~~~~---------------------------------~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 78 GMDTTIIVFKLS---------------------------------QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred cccceEEEEecC---------------------------------CCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 999999999998 7889999999999999999888877 999999999
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcC
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
+++|....... .+.+|+..||++... .+.++||+.|.+|++|.- ++.+++|.+|.. .|..+++.+
T Consensus 124 akvW~~~~l~~------------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD-~VRgL~vl~ 189 (745)
T KOG0301|consen 124 AKVWRIGELVY------------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTD-CVRGLAVLD 189 (745)
T ss_pred eEEecchhhhc------------ccCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchhhhhccchh-heeeeEEec
Confidence 99999866422 789999999999887 579999999999999986 888999999998 799999998
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc-CCeEEEEe
Q 001391 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIAT 437 (1088)
Q Consensus 359 dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~ll~~t 437 (1088)
++. +++++.||.|++|++.+.++..+. +|...|.++.... ++.++.++
T Consensus 190 ~~~-flScsNDg~Ir~w~~~ge~l~~~~------------------------------ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 190 DSH-FLSCSNDGSIRLWDLDGEVLLEMH------------------------------GHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred CCC-eEeecCCceEEEEeccCceeeeee------------------------------ccceEEEEEEecCCCCeEEEec
Confidence 854 789999999999999776554443 4556788888444 45556666
Q ss_pred cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
.++.+..| ... ...+....+ ...+++..+..+ .-|++|+.||.||||..+..+
T Consensus 239 EDrtlriW---~~~--e~~q~I~lP-ttsiWsa~~L~N---------gDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 239 EDRTLRIW---KKD--ECVQVITLP-TTSIWSAKVLLN---------GDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CCceEEEe---ecC--ceEEEEecC-ccceEEEEEeeC---------CCEEEeccCceEEEEEecccc
Confidence 77777744 433 222333333 457888777655 468999999999999887544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=218.42 Aligned_cols=276 Identities=18% Similarity=0.270 Sum_probs=224.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.+.|..+.|. ++ ...|++|. |..|++|+...++ .+.++.+..+ .|..++|. ++++ ..|+
T Consensus 174 h~gev~~v~~l--~~----sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-~it~~d~d-------~~~~---~~iA 236 (459)
T KOG0288|consen 174 HEGEVHDVEFL--RN----SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG-NITSIDFD-------SDNK---HVIA 236 (459)
T ss_pred cccccceeEEc--cC----cchhhhcchhhhhhhhhcccchhhhhhhhhccCC-Ccceeeec-------CCCc---eEEe
Confidence 67889999999 87 56788866 8999999987766 6667776445 69999998 6663 7777
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
.+.|+.+++|++.. .+...+|.||++.|+++.|.. ....+++|+.|.+|++||+....+..+
T Consensus 237 as~d~~~r~Wnvd~---------------~r~~~TLsGHtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDS---------------LRLRHTLSGHTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ecCCCceeeeeccc---------------hhhhhhhcccccceeeehhhc---cccceeeccccchhhhhhhhhhheecc
Confidence 78899999999984 578889999999999999987 555699999999999999999988887
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+.....+.-..+ ....+++|-.|+.|++||.+ ...+....
T Consensus 299 ~l~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~R---------------------------------s~~~~~sv 338 (459)
T KOG0288|consen 299 VLPGSQCNDIVC-------SISDVISGHFDKKVRFWDIR---------------------------------SADKTRSV 338 (459)
T ss_pred ccccccccceEe-------cceeeeecccccceEEEecc---------------------------------CCceeeEe
Confidence 765544332221 15678899999999999998 56666666
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--cCcceEEEEEC--CCEEEEEeCCC
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
..|. .|+++..++++..+++++.|.++.+.|+++... ..++ ...+ -....+.+.|+ +.|+++|+.||
T Consensus 339 ~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~---sA~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 339 PLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTF---SAEGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred ecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEe---eccccccccccceeEECCCCceeeeccCCC
Confidence 6665 899999999999999999999999999998543 1111 2222 12337788898 58999999999
Q ss_pred cEEEEcC-CCceeEEEcccCCC-CeEEEEEcCCCCEEEEEeCCCCEEEE
Q 001391 329 TCRVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~h~~~-~V~~l~~~~dg~~l~tg~~Dg~I~iw 375 (1088)
.|+||++ ++++...+...... +|++++|+|.|..|++++.++.+.+|
T Consensus 410 sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 410 SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999 78887777665442 59999999999999999999999999
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=209.78 Aligned_cols=283 Identities=18% Similarity=0.250 Sum_probs=219.1
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC-------ceeEEEEeeecCCCCCcEEEEEecC
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-------RCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-------~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
+....+-|..|+| ||++|++|+.||.|.+||..+|+..+-++... ...+.++.| +.|..++|+|+.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F---SRDsEMlAsGsqD 284 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF---SRDSEMLASGSQD 284 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee---cccHHHhhccCcC
Confidence 4456789999999 99999999999999999999998765544221 112333443 7888999999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEECCCcEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s~Dg~v~ 281 (1088)
|.|++|.+. ++.++++|. .|+..|+++.|+.|+..+++++.|.++|
T Consensus 285 GkIKvWri~---------------------------------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 285 GKIKVWRIE---------------------------------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred CcEEEEEEe---------------------------------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEE
Confidence 999999999 788888887 8999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccC-CCCeEEEEEc
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYD 357 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~-~~~V~~l~~~ 357 (1088)
+.-+.+++ .++ .+.||...|..+.|. |..+++++.||+++||+. +++++.+++... ..+|.++...
T Consensus 332 iHGlKSGK--------~LK--EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 332 IHGLKSGK--------CLK--EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred Eeccccch--------hHH--HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 99999864 444 788999999999998 789999999999999999 888888886533 3368888887
Q ss_pred CCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEE
Q 001391 358 SLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYI 435 (1088)
Q Consensus 358 ~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~ 435 (1088)
|.. ..++.+.+.++|.|.++.++.++++.... ...+..-+.+.+|.|. +++
T Consensus 402 PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk---------------------------REgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK---------------------------REGGDFINAILSPKGEWIYC 454 (508)
T ss_pred CCCCceEEEEcCCCeEEEEeccceEEeeeccCC---------------------------ccCCceEEEEecCCCcEEEE
Confidence 754 57888999999999999887655443211 1123345566788774 566
Q ss_pred EecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
.+.++.+|.+..... ..+..+..++. .+..+.- .|..+++|+-++||.+++|.
T Consensus 455 igED~vlYCF~~~sG---~LE~tl~VhEk-dvIGl~H--------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSG---KLERTLPVHEK-DVIGLTH--------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EccCcEEEEEEeecC---ceeeeeecccc-ccccccc--------CcccchhhhhcccchhhhcC
Confidence 677888886655443 33344444533 2333333 24669999999999999994
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=192.49 Aligned_cols=296 Identities=14% Similarity=0.193 Sum_probs=224.3
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
+++|+. ++..|.+. .+| +.++.++.|.++.||--.. .+.+.++.||++.|||++
T Consensus 6 l~GHER-plTqiKyN-------~eG---DLlFscaKD~~~~vw~s~n---------------GerlGty~GHtGavW~~D 59 (327)
T KOG0643|consen 6 LQGHER-PLTQIKYN-------REG---DLLFSCAKDSTPTVWYSLN---------------GERLGTYDGHTGAVWCCD 59 (327)
T ss_pred cccCcc-ccceEEec-------CCC---cEEEEecCCCCceEEEecC---------------CceeeeecCCCceEEEEE
Confidence 567777 79999999 666 4677777799999997643 578899999999999999
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-----CCeEEEEEeccCc
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVWKVDWEH 214 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-----dg~I~vwd~~~~~ 214 (1088)
..- +.++|+||+.|.++++||+++|+++.+++.+. .+..+.| +.++++++..+. .+.|.++|++...
T Consensus 60 id~---~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~--~Vk~~~F---~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 60 IDW---DSKHLITGSADQTAKLWDVETGKQLATWKTNS--PVKRVDF---SFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ecC---CcceeeeccccceeEEEEcCCCcEEEEeecCC--eeEEEee---ccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 988 89999999999999999999999999987554 3444444 677877776654 4679999988221
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
.. .....++..+..++..++.+-|.|-+++|++|..||.|.+||.+++.
T Consensus 132 ~~--------------------------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~----- 180 (327)
T KOG0643|consen 132 SD--------------------------IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK----- 180 (327)
T ss_pred hh--------------------------hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-----
Confidence 10 01456688888899999999999999999999999999999999963
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
+.+. ....|...|.+++++ ..++++++.|.+.++||. +-..++++.... ||.+.+++|....++.||.-..
T Consensus 181 --~~v~--s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 181 --ELVD--SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred --eeee--chhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc--cccceecccccceEEecCCcee
Confidence 3343 567799999999999 579999999999999999 667777776543 7999999998877777664322
Q ss_pred EEEEEcCCC--CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe-cCCeEE
Q 001391 372 IKVHQFQAF--LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLY 443 (1088)
Q Consensus 372 I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t-~~g~i~ 443 (1088)
-|+.+. ..-.++ .+.+.+. ..+.++...+|-++|++++|+|+|+.++++ .+|++.
T Consensus 255 ---~dVTTT~~r~GKFE-----------ArFyh~i---~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 255 ---MDVTTTSTRAGKFE-----------ARFYHLI---FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred ---eeeeeecccccchh-----------hhHHHHH---HHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 222110 000010 0011100 123456667899999999999999888765 566654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-22 Score=207.60 Aligned_cols=278 Identities=17% Similarity=0.273 Sum_probs=228.9
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
.|+++... |. ...+++|. |.++.++|..+++.+..+.+|.. .|..+.++ |+. +..+..+.|.
T Consensus 221 gi~ald~~--~s----~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-ki~~v~~~-------~~~---~~v~~aSad~ 283 (506)
T KOG0289|consen 221 GITALDII--PS----SSKILTGGEDKTAVLFDKPSNQILATLKGHTK-KITSVKFH-------KDL---DTVITASADE 283 (506)
T ss_pred CeeEEeec--CC----CCcceecCCCCceEEEecchhhhhhhccCcce-EEEEEEec-------cch---hheeecCCcc
Confidence 47788888 65 57888887 78999999999999999999776 79999999 553 2455556699
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP- 176 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~- 176 (1088)
.|+||...... .......|...|+.+..+| .|.||++++.|++..+.|++++..+......
T Consensus 284 ~i~vws~~~~s---------------~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 284 IIRVWSVPLSS---------------EPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred eEEeecccccc---------------Cccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 99999987532 2344568999999999999 9999999999999999999999988776543
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
......+..| .|||.++.+|+.||.|+|||+. ....+..|.+|+
T Consensus 346 s~v~~ts~~f---HpDgLifgtgt~d~~vkiwdlk---------------------------------s~~~~a~Fpght 389 (506)
T KOG0289|consen 346 SDVEYTSAAF---HPDGLIFGTGTPDGVVKIWDLK---------------------------------SQTNVAKFPGHT 389 (506)
T ss_pred ccceeEEeeE---cCCceEEeccCCCceEEEEEcC---------------------------------CccccccCCCCC
Confidence 3344566777 4889999999999999999998 566788899999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEc
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd 334 (1088)
++|..|+|+.+|-+|+++++|+.|++||++..+ .++.+.+ .....+.++.|. +.+++.++.|=.|++++
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--------n~kt~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLK--------NFKTIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhc--------ccceeec-cccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 999999999999999999999999999999853 3331122 223378889997 88999998887777777
Q ss_pred C---CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 335 S---DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 335 ~---~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
- .-.++..+..|.+ ..+.+.|..+.++++++|.|..++++.+
T Consensus 461 k~~k~W~~~~~~~~~sg-~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSG-LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeehhhhccc-ccceeeecccceEEeeccchhheEEeec
Confidence 4 3356677788887 5889999999999999999999988764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-23 Score=199.35 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=228.8
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~v 207 (1088)
..||+.+|.+++|+|..++|-+|++++.|+.-.+-+-++|..+.++.+|.+. +|+..+ +.+...-|++..|-+-++
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga-vw~~~l---~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA-VWSATL---NKNATRAASAAADFTAKV 85 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc-eeeeec---Cchhhhhhhhcccchhhh
Confidence 4589999999999998889999999999999999999999999999988764 777776 556677888999999999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
||.- ++..++.|. |+.-|.+++|+.|.++|++|+.++.+|+||++.
T Consensus 86 w~a~---------------------------------tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 86 WDAV---------------------------------TGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred hhhh---------------------------------hhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 9988 666676664 899999999999999999999999999999988
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
.+. +. ..+.+|++.|..+.|. ++.|++...|++||+||. ++..++.+.-.. +|.++.++++|++|.
T Consensus 132 p~A-------pp--~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 132 PKA-------PP--KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILT 200 (334)
T ss_pred CCC-------Cc--hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEE
Confidence 543 22 2778999999999997 789999999999999999 899999887654 599999999998655
Q ss_pred EEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeE
Q 001391 365 TAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYL 442 (1088)
Q Consensus 365 tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i 442 (1088)
+ ..-+.|++||... ..++.+. .| -.|.+....|+. .++++.++.++
T Consensus 201 i-a~gssV~Fwdaksf~~lKs~k------------------~P-------------~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 201 I-AYGSSVKFWDAKSFGLLKSYK------------------MP-------------CNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred E-ecCceeEEeccccccceeecc------------------Cc-------------cccccccccCCCceEEecCcceEE
Confidence 5 4567899999854 2222111 11 135666677765 55566778889
Q ss_pred EEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 443 YHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
+.++........ .....+-.++.|+.+.|+ +...|+|++||+|++|....++
T Consensus 249 ~kfDy~TgeEi~---~~nkgh~gpVhcVrFSPd--------GE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 249 YKFDYNTGEEIG---SYNKGHFGPVHCVRFSPD--------GELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEeccCCceee---ecccCCCCceEEEEECCC--------CceeeccCCCceEEEEEecCCC
Confidence 887766554422 222334678999998654 5899999999999999886544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-23 Score=214.43 Aligned_cols=204 Identities=20% Similarity=0.305 Sum_probs=168.2
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
.....+..|.+.+.++.|.+ +...|++|+.|..|++|++...+ .+.++.+.. ..+.++.+ .+++..+++.+
T Consensus 166 ~~~~~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~---d~~~~~~iAas 238 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDF---DSDNKHVIAAS 238 (459)
T ss_pred hhhhhhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccC-CCcceeee---cCCCceEEeec
Confidence 44556778999999999999 88899999999999999997665 344444332 33556665 67788999999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.|+.+++|++. ..+...++.||.+.|+++.|......+++++.|++|
T Consensus 239 ~d~~~r~Wnvd---------------------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 239 NDKNLRLWNVD---------------------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred CCCceeeeecc---------------------------------chhhhhhhcccccceeeehhhccccceeeccccchh
Confidence 99999999998 778889999999999999999887779999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
++||+....+ .+. .+ ....+.+++..+..+++|-.|++||+||. .+.+......+. .|+++..+++
T Consensus 286 K~WDl~k~~C--------~kt-~l--~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~ 352 (459)
T KOG0288|consen 286 KLWDLQKAYC--------SKT-VL--PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMD 352 (459)
T ss_pred hhhhhhhhhe--------ecc-cc--ccccccceEecceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccC
Confidence 9999998544 321 22 22345666666888999999999999998 777777777765 4999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCC
Q 001391 360 SSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..|.+++.|.++.++|+++
T Consensus 353 g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred CeEEeeecCCCceeeeeccc
Confidence 99999999999999999864
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=213.20 Aligned_cols=295 Identities=18% Similarity=0.230 Sum_probs=216.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
+...|+++++. |. |-.+++|+ |-+|++||...- +.-+.++--+...|..++|+ +.| +.+
T Consensus 166 gtk~Vsal~~D--p~----GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys-------~Tg---~~i 229 (641)
T KOG0772|consen 166 GTKIVSALAVD--PS----GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS-------VTG---DQI 229 (641)
T ss_pred CceEEEEeeec--CC----CceeeeccccceEEEEecccccccchhhhccCcccccccceeeec-------CCC---CeE
Confidence 55679999999 98 88999988 999999998642 22233333345579999999 555 389
Q ss_pred EEEECCCEEEEEEeccCC----CCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 91 VALFGEKRVKLFELNFEL----SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~----~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
|+++|...++|+|-..-. ..+..| ..-+..-+||...++|.+|+|. +.+.++|++.||++||||+..
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQY-------I~Dm~nTKGHia~lt~g~whP~--~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQY-------IRDMYNTKGHIAELTCGCWHPD--NKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchh-------hhhhhccCCceeeeeccccccC--cccceEEecCCCcEEEEecCC
Confidence 999999999999976321 111111 1223455799999999999992 345788999999999999986
Q ss_pred Cce-EEEec----cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 167 SSI-ILEVH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 167 ~~~-~~~~~----~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
.+. +..++ ++.+..+.+++| ++++.+||+|..||.|.+|+....
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~---nrdg~~iAagc~DGSIQ~W~~~~~---------------------------- 349 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAW---NRDGKLIAAGCLDGSIQIWDKGSR---------------------------- 349 (641)
T ss_pred chhheeEEeeccCCCcccCceeeec---CCCcchhhhcccCCceeeeecCCc----------------------------
Confidence 543 22222 333444555554 899999999999999999997610
Q ss_pred cccceeeeEEEeCCCC--CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~--~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
.....+..-..|.. .|++|.||+||++|+|-+.|.++++||++..+. ++...+-......-+.++|+
T Consensus 350 --~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk-------pL~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 350 --TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK-------PLNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred --ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc-------chhhhcCCCccCCCCccccCCC
Confidence 01223444567887 899999999999999999999999999988643 33211222233456789999
Q ss_pred CCEEEEEe------CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 318 DSFIITAG------EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 318 ~~~l~sg~------~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
..+|++|. ..|++.+||. +-..+..+.-... .|..+.|+|.-+.|..|+.||++++|-
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-eEEEEeecchhhheeeecCCCceEEEE
Confidence 46777775 3478999998 6677777765555 699999999999999999999999874
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=189.45 Aligned_cols=269 Identities=13% Similarity=0.141 Sum_probs=212.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEE--eeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF--QVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~--~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.+.|..|+|. .+ |..|++|+ |+++.||++...+.+... .+|.+ .|-.++|.|.. || .+++
T Consensus 19 ~~~~v~Sv~wn--~~----g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~~~~----~d-----~~at 82 (313)
T KOG1407|consen 19 HVQKVHSVAWN--CD----GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWDPKH----PD-----LFAT 82 (313)
T ss_pred hhhcceEEEEc--cc----CceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeCCCC----Cc-----ceEE
Confidence 67889999999 88 89999998 899999999887555433 34554 68899998642 44 7888
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
+++|++|++||+... ++......-.+. .-+.|+| +|++++.++.|..|.+.|.++.+....
T Consensus 83 as~dk~ir~wd~r~~---------------k~~~~i~~~~en-i~i~wsp---~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSG---------------KCTARIETKGEN-INITWSP---DGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred ecCCceEEEEEeccC---------------cEEEEeeccCcc-eEEEEcC---CCCEEEEecCcccEEEEEecccceeeh
Confidence 899999999999853 444444333233 4578899 999999999999999999988877655
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
.+.... ...+.++ .++.+++..+..|.|.|-.+. ..+++..+
T Consensus 144 ~~~~~e--~ne~~w~---~~nd~Fflt~GlG~v~ILsyp---------------------------------sLkpv~si 185 (313)
T KOG1407|consen 144 EQFKFE--VNEISWN---NSNDLFFLTNGLGCVEILSYP---------------------------------SLKPVQSI 185 (313)
T ss_pred hcccce--eeeeeec---CCCCEEEEecCCceEEEEecc---------------------------------cccccccc
Confidence 432211 1122222 234555555567889988877 77889999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i 330 (1088)
+.|.....||.|+|+|+++++|+.|-.+.+||++.. -+.+ .+.-+.-+|..+.|+ +.+|++|++|..|
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--------iC~R--~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--------ICER--CISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHh--------hhhe--eeccccCceEEEEeccCcceeeccCccceE
Confidence 999999999999999999999999999999999874 3332 667788899999998 8999999999999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
-|=++ +|..+..++. .+ +...++|+|...+||-++.|
T Consensus 256 DIA~vetGd~~~eI~~-~~-~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIPC-EG-PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeEecccCCeEEEeec-cC-CceeEEecCCCceeeEEecC
Confidence 99888 8998888863 44 68999999999999888765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-22 Score=198.56 Aligned_cols=295 Identities=14% Similarity=0.253 Sum_probs=226.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|...|.-|+.. .. ...+.+++ |.+-+||.+++|+++.++.+|.+ .|.+|+|+ +.+ ..++..+
T Consensus 147 HkDGiW~Vaa~--~t----qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-SVNsikfh-------~s~---~L~lTaS 209 (481)
T KOG0300|consen 147 HKDGIWHVAAD--ST----QPICGTASADHTARIWSLESGACLATYTGHTG-SVNSIKFH-------NSG---LLLLTAS 209 (481)
T ss_pred cccceeeehhh--cC----CcceeecccccceeEEeeccccceeeeccccc-ceeeEEec-------ccc---ceEEEcc
Confidence 34556666665 33 67777777 79999999999999999999888 79999999 554 1556667
Q ss_pred CCCEEEEEEec----cCC--CCCCC-----------CCC--------ccccccceeeeccCCCCcEEEEEEecccCCCCE
Q 001391 95 GEKRVKLFELN----FEL--SPNSQ-----------YQP--------ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS 149 (1088)
Q Consensus 95 gd~~v~iw~l~----~~~--~~~~~-----------~~~--------~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~ 149 (1088)
||++..||... .+. .+... -.+ |....-.++..+.+|...|.+..|.. .++.
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~---gg~Q 286 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA---GGQQ 286 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc---Ccce
Confidence 89999999732 111 00000 001 11122346778899999999999999 9999
Q ss_pred EEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 150 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
+++++.|.+..+||+++++.+..+.+|...+.. ++. .|...++++.+.|-+.++||++
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH-cst---HptQrLVvTsSrDtTFRLWDFR------------------ 344 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTH-CST---HPTQRLVVTSSRDTTFRLWDFR------------------ 344 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccc-ccc---CCcceEEEEeccCceeEeccch------------------
Confidence 999999999999999999999999888765433 222 4678899999999999999998
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~ 309 (1088)
..-..+..|.||.+.|+++.|..+ ..++++++|++|++||+++.+. ++. ..-...
T Consensus 345 --------------eaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs-------plA---TIRtdS 399 (481)
T KOG0300|consen 345 --------------EAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS-------PLA---TIRTDS 399 (481)
T ss_pred --------------hhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC-------cce---eeecCC
Confidence 134567889999999999999876 4589999999999999998643 221 222345
Q ss_pred ceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEE-----cccCCCCeEEEEEcCCC--CEEEEEeCCCCEEEEEcC
Q 001391 310 RVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMI-----KEHIGRGIWRCLYDSLS--SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 310 ~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~-----~~h~~~~V~~l~~~~dg--~~l~tg~~Dg~I~iwd~~ 378 (1088)
++..++.+ +..|+.--.+..||+||++|..+..+ ++|.. -|.+++|..+- .-|+++|.|..+.-|++.
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce-eeeeeeccccCcccccccccccceeeeeEec
Confidence 67777777 45777778888999999988776654 46776 59999997543 358999999999999985
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=216.72 Aligned_cols=281 Identities=15% Similarity=0.296 Sum_probs=224.5
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
++-+.+.+|+. .|..+++. ++ ..+++ +.|+++++|+-.... ......+.+|.+
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~-------~~-----~~i~s~sRd~t~~vw~~~~~~-------------~l~~~~~~~~~g 58 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVT-------DG-----VCIISGSRDGTVKVWAKKGKQ-------------YLETHAFEGPKG 58 (745)
T ss_pred eeEEEeccCcc-chheeEec-------CC-----eEEeecCCCCceeeeeccCcc-------------cccceecccCcc
Confidence 34566777665 68888876 44 44444 449999999976433 334456778899
Q ss_pred cEEE-EEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 134 WVFD-VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 134 ~I~~-v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
.|.. +++.+ .++..|++|+.|.+|.+|...+...+..+.+|...+ .++.. ..++ .+++|+.|.++++|...
T Consensus 59 ~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV-C~ls~---~~~~-~~iSgSWD~TakvW~~~- 130 (745)
T KOG0301|consen 59 FIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV-CSLSI---GEDG-TLISGSWDSTAKVWRIG- 130 (745)
T ss_pred eeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccce-eeeec---CCcC-ceEecccccceEEecch-
Confidence 9988 88876 366679999999999999999999999999887643 34432 2334 49999999999999975
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
+....+.+|+..|+++++-|++ .++|||.|++|++|.-.+
T Consensus 131 ----------------------------------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~----- 170 (745)
T KOG0301|consen 131 ----------------------------------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT----- 170 (745)
T ss_pred ----------------------------------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc-----
Confidence 3445589999999999999998 899999999999998744
Q ss_pred CCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
.++ ++.||...|..+++- +..|++++.||.|+.|+++|+.+..+.+|.. -|+++....++..++++|.|++
T Consensus 171 -----~l~--tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 171 -----LLK--TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred -----hhh--hhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccce-EEEEEEecCCCCeEEEecCCce
Confidence 233 889999999999998 5599999999999999999999999999998 6999998888889999999999
Q ss_pred EEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEec
Q 001391 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (1088)
Q Consensus 372 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~ 448 (1088)
++||+.. .+.+ .+..|. -.|.+..+.++|.++++++||.++.+...
T Consensus 243 lriW~~~-e~~q------------------~I~lPt------------tsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 243 LRIWKKD-ECVQ------------------VITLPT------------TSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEeecC-ceEE------------------EEecCc------------cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 9999874 2111 111222 24778888889999999999999866543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=196.22 Aligned_cols=270 Identities=20% Similarity=0.219 Sum_probs=206.4
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
...|.+|+|| |. ...++++|+ |++||+|+++. |..+.+....+..+|.+++|+ .||. ..++.+
T Consensus 27 ~DsIS~l~FS--P~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-------ddgs---kVf~g~ 91 (347)
T KOG0647|consen 27 EDSISALAFS--PQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-------DDGS---KVFSGG 91 (347)
T ss_pred ccchheeEec--cc---cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-------cCCc---eEEeec
Confidence 4679999999 83 256777888 99999999986 666666555455589999999 7773 555555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.+++||+.... ...+..|.+.|.++.|-+. ..-.+|+||+.|++|++||.+....+.++.
T Consensus 92 ~Dk~~k~wDL~S~Q----------------~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQ----------------VSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred cCCceEEEEccCCC----------------eeeeeecccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeee
Confidence 59999999999643 4556689999999999881 123489999999999999999999999999
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-Ee
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LV 253 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 253 (1088)
.|+++ |++.. ...+++.++.+..|.++++++.. ....+ ..
T Consensus 155 LPeRv--Ya~Dv-----~~pm~vVata~r~i~vynL~n~~--------------------------------te~k~~~S 195 (347)
T KOG0647|consen 155 LPERV--YAADV-----LYPMAVVATAERHIAVYNLENPP--------------------------------TEFKRIES 195 (347)
T ss_pred cccee--eehhc-----cCceeEEEecCCcEEEEEcCCCc--------------------------------chhhhhcC
Confidence 99875 45432 34578889999999999997211 11111 11
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC---------cceEEEEEC--CCEEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLT--DSFII 322 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---------~~I~~v~~~--~~~l~ 322 (1088)
.-+-.+++|+..+|.+..+.|+-.|.+-+..+..+..... +++..|. ..|.+++|+ .+.|+
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n--------FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv 267 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN--------FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV 267 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc--------eeEEEeccCCCCCCceEEecceEeecccceEE
Confidence 2334688999999998889999999999999988532111 2444443 247788998 47899
Q ss_pred EEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEE
Q 001391 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 323 sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg 366 (1088)
|+|.||++.+||- ....+.....|.. +|++.+|+.+|.+++-+
T Consensus 268 TaGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 268 TAGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFNRNGSIFAYA 311 (347)
T ss_pred EecCCceEEEecchhhhhhhccCcCCC-ccceeEecCCCCEEEEE
Confidence 9999999999999 4556677777887 89999999999876543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=215.64 Aligned_cols=264 Identities=15% Similarity=0.232 Sum_probs=214.8
Q ss_pred CCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCC
Q 001391 34 SLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 34 ~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~ 112 (1088)
+...||.|.+..|++|+..+++....+..+ ...|..+.|+ ++| ..|++ ..++.|.|||...
T Consensus 187 s~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws-------~~G----~~LavG~~~g~v~iwD~~~------ 248 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWS-------PDG----SHLAVGTSDGTVQIWDVKE------ 248 (484)
T ss_pred cCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEEC-------CCC----CEEEEeecCCeEEEEehhh------
Confidence 357999999999999999999866555543 4579999999 888 45555 5599999999985
Q ss_pred CCCCccccccceeeeccC-CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE-eccCCceeEEEEeeecCC
Q 001391 113 QYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE-VHSPERCLLYSMKLWGDN 190 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~-h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~-~~~~~~~~~~s~~~~~~s 190 (1088)
.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+.... +.+|.. .+..+.+ +
T Consensus 249 ---------~k~~~~~~~~h~~rvg~laW~-----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-eVCgLkw---s 310 (484)
T KOG0305|consen 249 ---------QKKTRTLRGSHASRVGSLAWN-----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-EVCGLKW---S 310 (484)
T ss_pred ---------ccccccccCCcCceeEEEecc-----CceEEEecCCCcEEEEEEecchhhhhhhhcccc-eeeeeEE---C
Confidence 456667777 99999999995 47899999999999999998776555 444433 3334444 7
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCC
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGS 269 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~ 269 (1088)
+++.++|+|+.|+.+.|||.. ...+...+..|...|.+++|+| ...
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~---------------------------------~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGL---------------------------------SPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred CCCCeeccCCCccceEeccCC---------------------------------CccccEEEeccceeeeEeeeCCCccC
Confidence 899999999999999999997 6778888999999999999999 456
Q ss_pred EEEEE--ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC---CEEEE-EeCCCcEEEEcC-CCceeEE
Q 001391 270 KLVSV--SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIIT-AGEDCTCRVWGS-DGKQLKM 342 (1088)
Q Consensus 270 ~l~s~--s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~---~~l~s-g~~Dg~i~vWd~-~~~~~~~ 342 (1088)
.||+| +.|+.|++||..++.. + ....-...|.++.|+. .++.+ |..+..|.||+. +-+.+..
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~--------i---~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGAR--------I---DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcE--------e---cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 78885 4699999999998643 2 2334457899999993 23333 345678999999 7888999
Q ss_pred EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 343 ~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+|..+ |..++++|||..+++|+.|.++++|++-
T Consensus 427 l~gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 427 LLGHTSR-VLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred ecCCcce-eEEEEECCCCCEEEEecccCcEEecccc
Confidence 9999995 9999999999999999999999999983
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=196.55 Aligned_cols=277 Identities=19% Similarity=0.261 Sum_probs=214.7
Q ss_pred eeeeeEEEEEec-cCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVH-LPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~-~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|..||-.|+||. .|+ |-+|++++ |+.=-+-+-+||.-+.+|.+|++ .|++.... .+. .+.|+
T Consensus 13 htrpvvdl~~s~itp~----g~flisa~kd~~pmlr~g~tgdwigtfeghkg-avw~~~l~-------~na----~~aas 76 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPD----GYFLISASKDGKPMLRNGDTGDWIGTFEGHKG-AVWSATLN-------KNA----TRAAS 76 (334)
T ss_pred CCcceeEEeccCCCCC----ceEEEEeccCCCchhccCCCCCcEEeeeccCc-ceeeeecC-------chh----hhhhh
Confidence 678999999992 234 66777777 76666667889999999999998 59988887 443 33333
Q ss_pred -ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-EE
Q 001391 94 -FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-IL 171 (1088)
Q Consensus 94 -~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-~~ 171 (1088)
+.|-+.+|||.-++. .+.++ .|..-|.+++|+. |.++|+||+.+..+||+|++..+. ..
T Consensus 77 aaadftakvw~a~tgd---------------elhsf-~hkhivk~~af~~---ds~~lltgg~ekllrvfdln~p~App~ 137 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGD---------------ELHSF-EHKHIVKAVAFSQ---DSNYLLTGGQEKLLRVFDLNRPKAPPK 137 (334)
T ss_pred hcccchhhhhhhhhhh---------------hhhhh-hhhheeeeEEecc---cchhhhccchHHHhhhhhccCCCCCch
Confidence 348999999977543 33333 5888999999999 999999999999999999987654 34
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
++.++.+.+- .+.++ .....|++.+.|++|++||.+ ++..++.
T Consensus 138 E~~ghtg~Ir-~v~wc---~eD~~iLSSadd~tVRLWD~r---------------------------------Tgt~v~s 180 (334)
T KOG0278|consen 138 EISGHTGGIR-TVLWC---HEDKCILSSADDKTVRLWDHR---------------------------------TGTEVQS 180 (334)
T ss_pred hhcCCCCcce-eEEEe---ccCceEEeeccCCceEEEEec---------------------------------cCcEEEE
Confidence 4544444322 22221 346688888999999999999 6666666
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
+. -...|.++..+++|++|.++ .-+.|.+||..+- ..++ -..-+..|.+...+ ...++.|++|..
T Consensus 181 L~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf--------~~lK---s~k~P~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF--------GLLK---SYKMPCNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred Ee-cCCCCcceeeccCCCEEEEe-cCceeEEeccccc--------ccee---eccCccccccccccCCCceEEecCcceE
Confidence 65 46789999999999876665 4568999999884 3332 22334557777777 368999999999
Q ss_pred EEEEcC-CCceeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 330 CRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
++.||. +|..+..+ ++|.+ +|.++.|+|+|..-++|+.||+|++|...
T Consensus 248 ~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999 88888885 89999 89999999999999999999999999873
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=207.91 Aligned_cols=309 Identities=14% Similarity=0.216 Sum_probs=209.8
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc----eEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
.......+++|+..|.++++.| .|..+++|+-|.+|++||+.... ....+...+...+.++.+ ++.+..|
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y---s~Tg~~i 229 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY---SVTGDQI 229 (641)
T ss_pred CccceEeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeee---cCCCCeE
Confidence 4556778899999999999999 99999999999999999997532 234444444444556665 5778888
Q ss_pred EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEE
Q 001391 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVS 275 (1088)
Q Consensus 197 ~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s 275 (1088)
++.+....++|+|-...+... ......--.-+...+||...+++.+|+|+. ..++|++
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e---------------------~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVE---------------------FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred EEEecCcceeEEccCCceeee---------------------eeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 887778899999976211111 000000112344567999999999999976 5789999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCC---cee-EEEcccCC-
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG---KQL-KMIKEHIG- 348 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~---~~~-~~~~~h~~- 348 (1088)
.|+++||||+...+. ..+.+++....+..-.++.|+|+ +.+|+.|+.||.|.+|+..+ ++. ..-..|..
T Consensus 289 ~DgtlRiWdv~~~k~----q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKS----QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred CCCcEEEEecCCchh----heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 999999999987543 13445433344555578999998 68899999999999999732 222 22244543
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC--CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
..|++|.|++||++|++-|.|+++++||++. +.+....+. ++ ...-+..+
T Consensus 365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL-----------------~t-----------~~~~tdc~ 416 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL-----------------PT-----------PFPGTDCC 416 (641)
T ss_pred CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCC-----------------Cc-----------cCCCCccc
Confidence 3599999999999999999999999999964 222221111 11 12346788
Q ss_pred eccCCeEEEEec-------CCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEE
Q 001391 427 LTSEDTLYIATN-------HGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTI 498 (1088)
Q Consensus 427 ~s~~~~ll~~t~-------~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~i 498 (1088)
|+|+.++++++. .|.++.+ +..+ +..+.... ....+....+++ .-+.|.+|+.||.+++
T Consensus 417 FSPd~kli~TGtS~~~~~~~g~L~f~---d~~t--~d~v~ki~i~~aSvv~~~Whp--------kLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 417 FSPDDKLILTGTSAPNGMTAGTLFFF---DRMT--LDTVYKIDISTASVVRCLWHP--------KLNQIFAGSGDGTAHV 483 (641)
T ss_pred cCCCceEEEecccccCCCCCceEEEE---eccc--eeeEEEecCCCceEEEEeecc--------hhhheeeecCCCceEE
Confidence 999988877642 2445533 3222 22222222 123344444433 3378899999999999
Q ss_pred EEE
Q 001391 499 VRV 501 (1088)
Q Consensus 499 w~~ 501 (1088)
|--
T Consensus 484 yYd 486 (641)
T KOG0772|consen 484 YYD 486 (641)
T ss_pred EEC
Confidence 743
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=194.44 Aligned_cols=319 Identities=17% Similarity=0.285 Sum_probs=231.6
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
+++++.+.||.+.||.++... ....+.+++.|.+.+||.++++.++.++.+|.++ +.++.| .+.+.++++++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~---tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-VNsikf---h~s~~L~lTaSG 210 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADS---TQPICGTASADHTARIWSLESGACLATYTGHTGS-VNSIKF---HNSGLLLLTASG 210 (481)
T ss_pred Eeehhhhcccccceeeehhhc---CCcceeecccccceeEEeeccccceeeecccccc-eeeEEe---ccccceEEEccC
Confidence 567788899999999999977 7779999999999999999999999999988775 556666 467899999999
Q ss_pred CCeEEEEEeccCccccCCC--------CCCCcc------CCC-CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC
Q 001391 202 YNEIIVWKVDWEHVAPLLN--------SPEGNH------AHG-SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~--------~~~~~s------~~~-~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp 266 (1088)
|++..||....+=-.+... ....++ .++ ..++..++ ..++..+.+|.+.|.+..|..
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti--------RvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI--------RVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee--------eeeeeeeeccccceEehhhhc
Confidence 9999999844211111110 000011 000 01122222 346788999999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC--CceeEE
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD--GKQLKM 342 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~--~~~~~~ 342 (1088)
.|+.+++++.|++..+||++++ +.+. .+.||....+.++-+ ..++++.+.|.+.|+||+. -..+..
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtg--------e~v~--~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETG--------EVVN--ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred CcceeeeeeccccceeeeeccC--------ceec--cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeee
Confidence 9999999999999999999996 4554 889999999988887 4689999999999999993 355778
Q ss_pred EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce
Q 001391 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (1088)
Q Consensus 343 ~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 422 (1088)
|++|.. .|++..|..+. .+++|+.|.+|++||+++-. ..+-.+. .+.++
T Consensus 353 FQGHtd-tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR----------------splATIR-------------tdS~~ 401 (481)
T KOG0300|consen 353 FQGHTD-TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR----------------SPLATIR-------------TDSPA 401 (481)
T ss_pred eccccc-ceeEEEEecCC-ceeecCCCceEEEeeecccc----------------Ccceeee-------------cCCcc
Confidence 999998 79999998775 58999999999999995421 0011111 12356
Q ss_pred EEEEeccCCeEEEEecCC-eEEEEEeccCCcceeE-EeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 423 RCLHLTSEDTLYIATNHG-YLYHTKLCDMDSVNWN-KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 423 ~~l~~s~~~~ll~~t~~g-~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
+.++.+..+.+++.-.++ ++..+++......+.. ...++| .+-+.|.++...++ -.-+++++-|..+.-|+
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eehp------~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEHP------ACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeeccccCc------ccccccccccceeeeeE
Confidence 777777766666665444 4555555443322211 122333 55677777765541 14578888899999998
Q ss_pred EcC
Q 001391 501 VVG 503 (1088)
Q Consensus 501 ~~~ 503 (1088)
++.
T Consensus 475 in~ 477 (481)
T KOG0300|consen 475 INT 477 (481)
T ss_pred ecc
Confidence 864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-19 Score=196.03 Aligned_cols=223 Identities=17% Similarity=0.260 Sum_probs=161.2
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE-----E
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-----L 171 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~-----~ 171 (1088)
+.+-|.-+.... .+.+.+..+.+|.+.|+++.|+|. +..+||||+.|..|+||.+..+... .
T Consensus 55 ~~lgvlPl~~~G-----------r~~r~i~~l~~H~d~VtDl~FspF--~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 55 GKLGVLPLTAKG-----------RRTRDIGILAAHGDQVTDLGFSPF--ADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ceEEEEeccccC-----------ccccccceeecccceeeccCcccc--chhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 466666665322 124567788899999999999995 6679999999999999999844221 1
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
...++..-.+-.+.||+.. |+ ++ ..+.-|.++|||+. +.+.+..
T Consensus 122 ~~~g~~~~~vE~l~fHpTa-Dg-il-~s~a~g~v~i~D~s---------------------------------tqk~~~e 165 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPTA-DG-IL-ASGAHGSVYITDIS---------------------------------TQKTAVE 165 (1012)
T ss_pred eeecCCceEEEEeecccCc-Cc-eE-EeccCceEEEEEcc---------------------------------cCceeec
Confidence 1224555556667776432 33 33 44467999999998 7888999
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc-eEEEEECCC--EEEEEeCC-
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLTDS--FIITAGED- 327 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~-I~~v~~~~~--~l~sg~~D- 327 (1088)
+.+|.+.|.+..|+.||+.+++++.|+.|+|||.+.. .+.++ ...+|.+. =..+.|.|+ .|++.+.+
T Consensus 166 l~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~-------~~piQ--~te~H~~~rdsRv~w~Gn~~rlisTGF~~ 236 (1012)
T KOG1445|consen 166 LSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS-------MEPIQ--TTEGHGGMRDSRVLWAGNWERLISTGFTT 236 (1012)
T ss_pred ccCCchhhhccccccCCceEeeecCCcceEEeCCccC-------CCccc--cccccccchhheeeeccchhhhhhcccch
Confidence 9999999999999999999999999999999999875 34554 55777653 345677764 67766655
Q ss_pred ---CcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEc
Q 001391 328 ---CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (1088)
Q Consensus 328 ---g~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~ 377 (1088)
..+++||. =+.+++++.-....+|.--.|.||.++|+-+| .+.++..+.+
T Consensus 237 ~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 237 KRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred hhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence 46899998 34556655443333577777899988665554 4667777666
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-21 Score=202.20 Aligned_cols=288 Identities=13% Similarity=0.176 Sum_probs=217.5
Q ss_pred EEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCcc------ccccceeeeccCCC
Q 001391 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPET------CVNLSLVQSLPRLS 132 (1088)
Q Consensus 59 ~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~------~~~~~~~~~l~~h~ 132 (1088)
.+..|+- .|.+++++ ||.+ +.+.++.+++|.=|++.++...... .|.. ....+.-. ++|.
T Consensus 137 ~~~~H~~-s~~~vals-------~d~~---~~fsask~g~i~kw~v~tgk~~~~i-~~~~ev~k~~~~~~k~~r--~~h~ 202 (479)
T KOG0299|consen 137 VIGKHQL-SVTSVALS-------PDDK---RVFSASKDGTILKWDVLTGKKDRYI-IERDEVLKSHGNPLKESR--KGHV 202 (479)
T ss_pred eeccccC-cceEEEee-------cccc---ceeecCCCcceeeeehhcCcccccc-cccchhhhhccCCCCccc--cccc
Confidence 3444444 79999999 6763 6777777999999998865421111 1110 00112221 4899
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
..|.++++++ |+++||+|+.|..|.||+..+.+.+..+.+|... +.+++|. .....+++++.|..|++|+++
T Consensus 203 keil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~-V~~L~fr---~gt~~lys~s~Drsvkvw~~~- 274 (479)
T KOG0299|consen 203 KEILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA-VSSLAFR---KGTSELYSASADRSVKVWSID- 274 (479)
T ss_pred ceeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhcccccccc-eeeeeee---cCccceeeeecCCceEEEehh-
Confidence 9999999999 9999999999999999999999999888776554 5577763 345678999999999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
....+.++.||.+.|.+|....-++.+..|+.|+++++|++.....
T Consensus 275 --------------------------------~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-- 320 (479)
T KOG0299|consen 275 --------------------------------QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-- 320 (479)
T ss_pred --------------------------------HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--
Confidence 6677888899999999999988888777788999999999965322
Q ss_pred CCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc-cCC----------CCeEEEEEcCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE-HIG----------RGIWRCLYDSL 359 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~-h~~----------~~V~~l~~~~d 359 (1088)
..+.+|...+-|++|- ..++++|+.||.|.+|++ ..+++.+.+. |.- ..|++++..|.
T Consensus 321 ---------lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 321 ---------LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred ---------eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence 3788999999999997 789999999999999999 6666655432 211 14889999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEe
Q 001391 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIAT 437 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t 437 (1088)
.+++++|+.+|.|++|.+..... .-..++.+. -.+.|++++|+++|+ ++++.
T Consensus 392 sdL~asGS~~G~vrLW~i~~g~r-------------~i~~l~~ls-------------~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 392 SDLLASGSWSGCVRLWKIEDGLR-------------AINLLYSLS-------------LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CceEEecCCCCceEEEEecCCcc-------------ccceeeecc-------------cccEEEEEEEccCCCEEEEec
Confidence 99999999999999999853210 001111211 135799999999997 44443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=202.77 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=222.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEe--------eeCCcceEEEEecccccccCCCccceee
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQ--------VFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~--------~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
-+-|..|| || +.||++|+ ||.|.|||..+|++-..++ -++ ..|.++.|| .|. .
T Consensus 215 h~EcA~FS--PD----gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd-~aVlci~FS-------RDs----E 276 (508)
T KOG0275|consen 215 HVECARFS--PD----GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD-DAVLCISFS-------RDS----E 276 (508)
T ss_pred chhheeeC--CC----CceEeeccccceeeeehhccchhhhhhhhhhhcceeecc-cceEEEeec-------ccH----H
Confidence 37799999 99 99999999 8999999999997654332 223 479999999 665 6
Q ss_pred EEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 90 ~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
.+|++. ||.|++|.+.+ +.+++.+. .|+..|+|+.|+. |+..+.+++.|.++|+--+.+|
T Consensus 277 MlAsGsqDGkIKvWri~t---------------G~ClRrFdrAHtkGvt~l~FSr---D~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIET---------------GQCLRRFDRAHTKGVTCLSFSR---DNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred HhhccCcCCcEEEEEEec---------------chHHHHhhhhhccCeeEEEEcc---CcchhhcccccceEEEeccccc
Confidence 666655 99999999996 45666665 8999999999999 9999999999999999999999
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
++++++.+|.. .+..+.| .++|..+++++.||+|++|+.. +..
T Consensus 339 K~LKEfrGHsS-yvn~a~f---t~dG~~iisaSsDgtvkvW~~K---------------------------------tte 381 (508)
T KOG0275|consen 339 KCLKEFRGHSS-YVNEATF---TDDGHHIISASSDGTVKVWHGK---------------------------------TTE 381 (508)
T ss_pred hhHHHhcCccc-cccceEE---cCCCCeEEEecCCccEEEecCc---------------------------------chh
Confidence 99999987754 3334444 6899999999999999999998 555
Q ss_pred eeEEEe--CCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--cCcceEEEEEC--CCE
Q 001391 248 NLFRLV--GHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLT--DSF 320 (1088)
Q Consensus 248 ~~~~~~--gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--h~~~I~~v~~~--~~~ 320 (1088)
++.+++ +..-+|..+-.-|. ...++.|....+|.+-++.. +.++. ...| ..+...+++.+ |..
T Consensus 382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG---------QvVrs-fsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG---------QVVRS-FSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc---------eEEee-eccCCccCCceEEEEecCCCcE
Confidence 555554 34567888887774 46889999999999999876 33331 1112 22344455565 789
Q ss_pred EEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
++..++|+.++.|.. .|+...++.-|... |-.++-+|..++|++-+.||.+++|.
T Consensus 452 iYcigED~vlYCF~~~sG~LE~tl~VhEkd-vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSGKLERTLPVHEKD-VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEccCcEEEEEEeecCceeeeeeccccc-ccccccCcccchhhhhcccchhhhcC
Confidence 999999999999998 89999999999884 88999999999999999999999995
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-22 Score=204.08 Aligned_cols=290 Identities=16% Similarity=0.166 Sum_probs=219.4
Q ss_pred eeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEe
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~ 325 (1088)
..+..+.||.+.|.+++=+|.. ..++||+.||.|+|||+.... ++. .+..|.+.|..+++....+++++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------~~~--~f~AH~G~V~Gi~v~~~~~~tvg 126 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------CIR--TFKAHEGLVRGICVTQTSFFTVG 126 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------hhh--eeecccCceeeEEecccceEEec
Confidence 3456778999999999999987 789999999999999999853 343 88999999999999988999999
Q ss_pred CCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 326 ~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
.|.+|+.|.+++.++.++.+.. .+..+.-+..+..++|+|.+ |.|||....
T Consensus 127 dDKtvK~wk~~~~p~~tilg~s--~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~------------------------- 177 (433)
T KOG0268|consen 127 DDKTVKQWKIDGPPLHTILGKS--VYLGIDHHRKNSVFATCGEQ--IDIWDEQRD------------------------- 177 (433)
T ss_pred CCcceeeeeccCCcceeeeccc--cccccccccccccccccCce--eeecccccC-------------------------
Confidence 9999999999888888887655 37788877777889999874 899998421
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCC
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~ 485 (1088)
.++..+.|--|. |.++.+.+. ...
T Consensus 178 --------------~Pv~smswG~Dt-----------------------------------i~svkfNpv-------ETs 201 (433)
T KOG0268|consen 178 --------------NPVSSMSWGADS-----------------------------------ISSVKFNPV-------ETS 201 (433)
T ss_pred --------------CccceeecCCCc-----------------------------------eeEEecCCC-------cch
Confidence 123333332221 111111111 126
Q ss_pred eEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCc
Q 001391 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK 565 (1088)
Q Consensus 486 ~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~ 565 (1088)
+|++++.|+.|.+||+..+....+..+.. .. . -.|++|++-.+++++.|-.++.+|++.-.
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RT-------N-~IswnPeafnF~~a~ED~nlY~~DmR~l~--------- 262 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVILTM--RT-------N-TICWNPEAFNFVAANEDHNLYTYDMRNLS--------- 262 (433)
T ss_pred heeeeccCCceEEEecccCCccceeeeec--cc-------c-ceecCccccceeeccccccceehhhhhhc---------
Confidence 78999999999999998877665444322 10 1 15788976668889999999999998432
Q ss_pred ccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEE
Q 001391 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSV 645 (1088)
Q Consensus 566 ~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~ 645 (1088)
-|...-.+|...|+.++|||.|+-+++||.|.+|+||.+..... +. .-+.+ ....|.+|.|
T Consensus 263 -----~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S--------Rd---iYhtk---RMq~V~~Vk~ 323 (433)
T KOG0268|consen 263 -----RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS--------RD---IYHTK---RMQHVFCVKY 323 (433)
T ss_pred -----ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc--------hh---hhhHh---hhheeeEEEE
Confidence 12222348999999999999999999999999999999886422 01 00111 1246999999
Q ss_pred EeccCCceEEEEecCCCeEEEEEeecC
Q 001391 646 AKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 646 ~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
+ .|..|++|||.||.||+|.....
T Consensus 324 S---~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 324 S---MDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred e---ccccEEEecCCCcceeeeecchh
Confidence 9 78899999999999999997664
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=195.33 Aligned_cols=236 Identities=16% Similarity=0.244 Sum_probs=193.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|+||+.+ ++|+|+|+ |.+|+|||+.+...+..+..|.+ .|.++.|.+. -. ...+|+++
T Consensus 42 H~~sitavAVs--------~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-sitaL~F~~~------~S--~shLlS~s 104 (362)
T KOG0294|consen 42 HAGSITALAVS--------GPYVASGSSDETIHIYDMRKRKQLGILLSHAG-SITALKFYPP------LS--KSHLLSGS 104 (362)
T ss_pred cccceeEEEec--------ceeEeccCCCCcEEEEeccchhhhcceecccc-ceEEEEecCC------cc--hhheeeec
Confidence 88999999999 89999998 89999999999999999998877 7999999842 11 12678888
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.||.|.+|+... +.++..+++|.+.|+.++++| .+++-++.+.|+.++.||+.+|+.-..+
T Consensus 105 dDG~i~iw~~~~---------------W~~~~slK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~- 165 (362)
T KOG0294|consen 105 DDGHIIIWRVGS---------------WELLKSLKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVL- 165 (362)
T ss_pred CCCcEEEEEcCC---------------eEEeeeecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceee-
Confidence 899999999874 789999999999999999999 9999888999999999999776522211
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
++.
T Consensus 166 ----------------------------------~L~------------------------------------------- 168 (362)
T KOG0294|consen 166 ----------------------------------NLK------------------------------------------- 168 (362)
T ss_pred ----------------------------------ccC-------------------------------------------
Confidence 011
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vW 333 (1088)
|.. ..|.|+|.|.+++.++.+ .|-+|.+.+... + .....+.++.++.|. +..+++|+.|+.|++|
T Consensus 169 ~~a--t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v--------~---~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 169 NKA--TLVSWSPQGDHFVVSGRN-KIDIYQLDNASV--------F---REIENPKRILCATFLDGSELLVGGDNEWISLK 234 (362)
T ss_pred Ccc--eeeEEcCCCCEEEEEecc-EEEEEecccHhH--------h---hhhhccccceeeeecCCceEEEecCCceEEEe
Confidence 111 127899999988888776 588999888533 2 222233678888887 7899999999999999
Q ss_pred cC-CCceeEEEcccCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEcCC
Q 001391 334 GS-DGKQLKMIKEHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 334 d~-~~~~~~~~~~h~~~~V~~l~~--~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|. +..++..+.+|..+ |-.+.+ .|++.+|+|++.||.|++||++.
T Consensus 235 D~ds~~~~~~~~AH~~R-VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENR-VKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ccCCCccceeeecchhh-eeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 99 58889999999994 999884 67788999999999999999954
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=206.41 Aligned_cols=278 Identities=17% Similarity=0.256 Sum_probs=213.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|...|.|++=+ |. .-..+|+|+ ||.|+|||+++-.++.+|+.|.+ -|.+|++. .. ..+.++
T Consensus 65 HrdGV~~lakh--p~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~-------~~-----~~~tvg 126 (433)
T KOG0268|consen 65 HRDGVSCLAKH--PN---KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGICVT-------QT-----SFFTVG 126 (433)
T ss_pred cccccchhhcC--cc---hhhhhhccccCceEEEEehhhhhhhheeecccC-ceeeEEec-------cc-----ceEEec
Confidence 45668899888 86 226788888 89999999999999999999888 69999998 32 788888
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|++|+.|.++. .+.+++.+ ...+..+.-+. .+..+||+|.+ |.|||......+.++.
T Consensus 127 dDKtvK~wk~~~----------------~p~~tilg-~s~~~gIdh~~---~~~~FaTcGe~--i~IWD~~R~~Pv~sms 184 (433)
T KOG0268|consen 127 DDKTVKQWKIDG----------------PPLHTILG-KSVYLGIDHHR---KNSVFATCGEQ--IDIWDEQRDNPVSSMS 184 (433)
T ss_pred CCcceeeeeccC----------------Ccceeeec-ccccccccccc---ccccccccCce--eeecccccCCccceee
Confidence 899999999883 23333332 23456666666 67788998854 9999998888887776
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
-.... +.++.+. ......|++++.|+.|.+||++ ...+++...
T Consensus 185 wG~Dt-i~svkfN--pvETsILas~~sDrsIvLyD~R---------------------------------~~~Pl~KVi- 227 (433)
T KOG0268|consen 185 WGADS-ISSVKFN--PVETSILASCASDRSIVLYDLR---------------------------------QASPLKKVI- 227 (433)
T ss_pred cCCCc-eeEEecC--CCcchheeeeccCCceEEEecc---------------------------------cCCccceee-
Confidence 44432 3345542 2345678888899999999999 444444332
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
-+-.-+.|+|+|++-.++++++|..++.+|++... +++. ...+|...|.++.|+ |.-+++|+.|.+|||
T Consensus 228 ~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-------~p~~--v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 228 LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-------RPLN--VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred eeccccceecCccccceeeccccccceehhhhhhc-------ccch--hhcccceeEEEeccCCCcchhccccccceEEE
Confidence 22345789999988889999999999999998753 3454 788999999999999 789999999999999
Q ss_pred EcCC-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 333 WGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 333 Wd~~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|..+ +..-..+....-..|.++.|+.|.+++++|+.|+.|++|....
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 9994 3322222222223599999999999999999999999998743
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=206.06 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=214.8
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~ 123 (1088)
...+.|+-.+.-.+. . +.+.|..++|+|.. | .-+|+.+.-.+.||+.... .
T Consensus 9 ~e~~~w~~~~~~~~~--k--e~~~vssl~fsp~~----P------~d~aVt~S~rvqly~~~~~---------------~ 59 (487)
T KOG0310|consen 9 PEIRYWRQETFPPVH--K--EHNSVSSLCFSPKH----P------YDFAVTSSVRVQLYSSVTR---------------S 59 (487)
T ss_pred ccchhhhhhcccccc--c--ccCcceeEecCCCC----C------CceEEecccEEEEEecchh---------------h
Confidence 345566644432221 1 22369999999752 4 4577888889999998753 2
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
..+.+....+.|.++.|-. ||++||.|...|.|+|+|..+...+..+..|.. .+....|. ..++..+++|+.|+
T Consensus 60 ~~k~~srFk~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-pv~~~~f~--~~d~t~l~s~sDd~ 133 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA-PVHVTKFS--PQDNTMLVSGSDDK 133 (487)
T ss_pred hhhhHHhhccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccC-ceeEEEec--ccCCeEEEecCCCc
Confidence 3444555668999999999 999999999999999999777555555554433 23334442 24567888999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARI 282 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~i 282 (1088)
.+++||+. +......+.+|++-|.+.+|+|... .++|||.||.||+
T Consensus 134 v~k~~d~s---------------------------------~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 134 VVKYWDLS---------------------------------TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred eEEEEEcC---------------------------------CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 99999998 4445668899999999999999654 7899999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CC-ceeEEEcccCCCCeEEEEEcC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~-~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
||++.... . .....|..+|-.+.+- +..|++++. ..++|||+ .| +.+..+..|.. .|+|+++..
T Consensus 181 ~DtR~~~~-------~---v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s 248 (487)
T KOG0310|consen 181 WDTRSLTS-------R---VVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLAS 248 (487)
T ss_pred EEeccCCc-------e---eEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeec
Confidence 99988521 1 2567899999999997 578888774 57999999 35 44555555776 799999999
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEe
Q 001391 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIAT 437 (1088)
Q Consensus 359 dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t 437 (1088)
++..|++||-|+.|++||+..- .-+.....| ++|-+++.+|++ .++++.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~-----------------Kvv~s~~~~-------------~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNY-----------------KVVHSWKYP-------------GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred CCceEeecccccceEEEEccce-----------------EEEEeeecc-------------cceeeEEecCCCceEEEec
Confidence 9999999999999999997431 112222222 468999999977 556666
Q ss_pred cCCeEE
Q 001391 438 NHGYLY 443 (1088)
Q Consensus 438 ~~g~i~ 443 (1088)
.+|-+.
T Consensus 299 snGlv~ 304 (487)
T KOG0310|consen 299 SNGLVS 304 (487)
T ss_pred ccceee
Confidence 677654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=222.06 Aligned_cols=295 Identities=15% Similarity=0.189 Sum_probs=226.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCC------------CeeEEEEeeeCCcceEEEEeccccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEA------------GTLIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~t------------g~~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
+...|.+++.+ || +..+|+|+ |+.++||+.+. .+.+.+...|.+ .|.|+.|+
T Consensus 12 ~~~~IfSIdv~--pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S------ 78 (942)
T KOG0973|consen 12 NEKSIFSIDVH--PD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFS------ 78 (942)
T ss_pred CCeeEEEEEec--CC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEEC------
Confidence 44569999999 99 89999976 57888999743 233445555555 79999999
Q ss_pred CCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCC----ccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc
Q 001391 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQP----ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1088)
Q Consensus 81 ~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~----~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~ 155 (1088)
||| .+||+++ |+.|.||.... ......|.. ...-..+....+.+|+..|.+++|+| ++.+||+++.
T Consensus 79 -~dG----~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp---~~~~lvS~s~ 149 (942)
T KOG0973|consen 79 -PDG----SYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP---DDSLLVSVSL 149 (942)
T ss_pred -CCC----CeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCC---CccEEEEecc
Confidence 898 7888776 78899999884 111122211 12225778899999999999999999 9999999999
Q ss_pred CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 156 Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
|++|.+||..+.+.+..+.+|.. .+-.+.+ +|-|.++|+-+.|++|+||+..
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~---DP~Gky~ASqsdDrtikvwrt~------------------------ 201 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQS-LVKGVSW---DPIGKYFASQSDDRTLKVWRTS------------------------ 201 (942)
T ss_pred cceEEEEccccceeeeeeecccc-cccceEE---CCccCeeeeecCCceEEEEEcc------------------------
Confidence 99999999999988888887754 2334444 7899999999999999999976
Q ss_pred eeEecccccceeeeEEEeCC------CCCEEEEEEcCCCCEEEEEEC----CCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 236 CFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSD----DRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh------~~~V~~v~~sp~g~~l~s~s~----Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
+....+.+.++ +.-...+.|+|||++|++.-. -.++.|.+-.+.+. . ..+.
T Consensus 202 ---------dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~---------~-~~Lv 262 (942)
T KOG0973|consen 202 ---------DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV---------D-KDLV 262 (942)
T ss_pred ---------cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee---------e-eeee
Confidence 22223333322 335778999999999998532 23566666544321 1 3889
Q ss_pred ccCcceEEEEECC-------C------------EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEE
Q 001391 306 GHNARVWDCCLTD-------S------------FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 306 ~h~~~I~~v~~~~-------~------------~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~t 365 (1088)
||.+++.+++|++ . .+++|+.|++|-||.. ..+++.....-...+|..++|+|||..|+.
T Consensus 263 GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 263 GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFA 342 (942)
T ss_pred cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEE
Confidence 9999999999972 2 6889999999999998 667776655545558999999999999999
Q ss_pred EeCCCCEEEEEcCC
Q 001391 366 AGFDSAIKVHQFQA 379 (1088)
Q Consensus 366 g~~Dg~I~iwd~~~ 379 (1088)
++.||+|.+..++.
T Consensus 343 cS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 343 CSLDGTVALIHFEE 356 (942)
T ss_pred EecCCeEEEEEcch
Confidence 99999999999854
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-20 Score=213.37 Aligned_cols=272 Identities=9% Similarity=0.058 Sum_probs=193.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeE----------E---EEeeeCCcceEEEEecccccccC
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLI----------R---PFQVFHGIRLHGISCNFINCTEG 81 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~----------~---~~~~~~~~~V~~i~~s~~~~~~~ 81 (1088)
+...|....++ +| +..++++. +.....|+...|..+ . .+.+|.+ .|.+++|+|.
T Consensus 19 ~~~~i~~~~~~--~d----~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~-~V~~v~fsP~----- 86 (493)
T PTZ00421 19 HFLNVTPSTAL--WD----CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG-PIIDVAFNPF----- 86 (493)
T ss_pred ceecccccccc--CC----CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC-CEEEEEEcCC-----
Confidence 44566666666 66 44444444 455666765444322 1 3556655 7999999931
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIR 160 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~ 160 (1088)
+++ .+++++.|++|+||++........ ..+.+..+.+|...|.+++|+| ++ .+|++|+.|++|+
T Consensus 87 -d~~---~LaSgS~DgtIkIWdi~~~~~~~~--------~~~~l~~L~gH~~~V~~l~f~P---~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 87 -DPQ---KLFTASEDGTIMGWGIPEEGLTQN--------ISDPIVHLQGHTKKVGIVSFHP---SAMNVLASAGADMVVN 151 (493)
T ss_pred -CCC---EEEEEeCCCEEEEEecCCCccccc--------cCcceEEecCCCCcEEEEEeCc---CCCCEEEEEeCCCEEE
Confidence 541 444455699999999975321000 1245678899999999999999 65 6999999999999
Q ss_pred EEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEec
Q 001391 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1088)
Q Consensus 161 iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 240 (1088)
|||+.+++.+..+..+.. .++++++ ++++.+|++++.|+.|++||++
T Consensus 152 IWDl~tg~~~~~l~~h~~-~V~sla~---spdG~lLatgs~Dg~IrIwD~r----------------------------- 198 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSD-QITSLEW---NLDGSLLCTTSKDKKLNIIDPR----------------------------- 198 (493)
T ss_pred EEECCCCeEEEEEcCCCC-ceEEEEE---ECCCCEEEEecCCCEEEEEECC-----------------------------
Confidence 999999988888776544 4667776 5789999999999999999998
Q ss_pred ccccceeeeEEEeCCCCC-EEEEEEcCCCCEEEEEE----CCCcEEEEEcCCCcccCCCCceeeeceeee-ccCcceEEE
Q 001391 241 DQQHTAVNLFRLVGHEGS-IFRIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDC 314 (1088)
Q Consensus 241 ~~~~~~~~~~~~~gh~~~-V~~v~~sp~g~~l~s~s----~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~-~h~~~I~~v 314 (1088)
++..+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++... .+. ... .+...+...
T Consensus 199 ----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-------p~~--~~~~d~~~~~~~~ 265 (493)
T PTZ00421 199 ----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-------PYS--TVDLDQSSALFIP 265 (493)
T ss_pred ----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-------cee--EeccCCCCceEEE
Confidence 66677788889865 45788999888887765 479999999986432 221 222 223345555
Q ss_pred EEC--CCEEEEEe-CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC
Q 001391 315 CLT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 315 ~~~--~~~l~sg~-~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
.|+ +++|++++ .|+.|++||+ +++.+.........++..++|.|..
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 665 57788877 5999999999 6676666554444467888888853
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-20 Score=213.96 Aligned_cols=251 Identities=10% Similarity=0.094 Sum_probs=181.9
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCC-ccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCcccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV-STRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d-~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
.+.|++|+......+..+.+|.+ .|.+++|+ |+ + .+|++ +.|++|+||++.........
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~-~V~~lafs-------P~~~----~lLASgS~DgtIrIWDi~t~~~~~~~------- 113 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTS-SILDLQFN-------PCFS----EILASGSEDLTIRVWEIPHNDESVKE------- 113 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCC-CEEEEEEc-------CCCC----CEEEEEeCCCeEEEEECCCCCccccc-------
Confidence 37899999888788888888776 79999999 54 3 45554 55999999999753210000
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCE-EEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~-lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
....+..+.+|...|.+++|+| ++.. |++++.|++|++||+.+++.+..+..+ ..+.++.+ ++++.+|+++
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P---~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsw---spdG~lLat~ 185 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNP---MNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKW---NIKGNLLSGT 185 (568)
T ss_pred cccceEEeecCCCcEEEEEECC---CCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEE---CCCCCEEEEE
Confidence 0134556789999999999999 7764 579999999999999999877766533 34667776 6789999999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEE-----EEEcCCCCEEEEE
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-----IEWSSCGSKLVSV 274 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-----v~~sp~g~~l~s~ 274 (1088)
+.|+.|+|||++ ++..+..+.+|.+.+.. ..|++++.+++++
T Consensus 186 s~D~~IrIwD~R---------------------------------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 186 CVGKHMHIIDPR---------------------------------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred ecCCEEEEEECC---------------------------------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 999999999998 67777888999886543 3456899999998
Q ss_pred ECCC----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcc-cC
Q 001391 275 SDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE-HI 347 (1088)
Q Consensus 275 s~Dg----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~-h~ 347 (1088)
+.|+ +|+|||++... .++....+..+...+...... +.++++|+.|++|++|++....+..+.. +.
T Consensus 233 G~d~~~~R~VkLWDlr~~~-------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s 305 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTT-------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKS 305 (568)
T ss_pred EcCCCCccEEEEEECCCCC-------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccccc
Confidence 8774 79999998632 222211223333333222222 5788999999999999994333444332 22
Q ss_pred CCCeEEEEEcCCC
Q 001391 348 GRGIWRCLYDSLS 360 (1088)
Q Consensus 348 ~~~V~~l~~~~dg 360 (1088)
..++.+++|.|..
T Consensus 306 ~~p~~g~~f~Pkr 318 (568)
T PTZ00420 306 CSPFRSFGFLPKQ 318 (568)
T ss_pred CCCccceEEcccc
Confidence 2378889999864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=187.90 Aligned_cols=316 Identities=16% Similarity=0.236 Sum_probs=212.3
Q ss_pred ceEEecCCCc-eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--eeEEEEe--eeCCcceEEEEecccccc
Q 001391 6 LSEWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQ--VFHGIRLHGISCNFINCT 79 (1088)
Q Consensus 6 i~iWdl~~g~-~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~~~~~~~--~~~~~~V~~i~~s~~~~~ 79 (1088)
++-|++...+ |.+.|++|+|+ .| |++||+++ |+.|+||++.+- +..+.++ ..-+ --..+.|+
T Consensus 74 ~Hpl~~~~LKgH~~~vt~~~Fs--Sd----GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~Fa----- 141 (420)
T KOG2096|consen 74 VHPLNVSVLKGHKKEVTDVAFS--SD----GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFA----- 141 (420)
T ss_pred ccchhhhhhhccCCceeeeEEc--CC----CceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEEC-----
Confidence 4445555554 78899999999 88 99999988 699999999763 2222221 1112 34678898
Q ss_pred cCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 80 EGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 80 ~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
||-+ ...+++..+.++++|.+..... +.. +...+.......-+.|.-.|..+-... ++.+|++++.|..|
T Consensus 142 --pDc~--s~vv~~~~g~~l~vyk~~K~~d-G~~--~~~~v~~D~~~f~~kh~v~~i~iGiA~---~~k~imsas~dt~i 211 (420)
T KOG2096|consen 142 --PDCK--SVVVSVKRGNKLCVYKLVKKTD-GSG--SHHFVHIDNLEFERKHQVDIINIGIAG---NAKYIMSASLDTKI 211 (420)
T ss_pred --CCcc--eEEEEEccCCEEEEEEeeeccc-CCC--CcccccccccccchhcccceEEEeecC---CceEEEEecCCCcE
Confidence 5542 2455555688999999874331 110 000011112223345677777777766 88899999999999
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
.+|++. |+.+.++...... .+.+++ +|+|.+|++++.---|++|.+-..+... +
T Consensus 212 ~lw~lk-Gq~L~~idtnq~~-n~~aav---SP~GRFia~~gFTpDVkVwE~~f~kdG~-------------------f-- 265 (420)
T KOG2096|consen 212 CLWDLK-GQLLQSIDTNQSS-NYDAAV---SPDGRFIAVSGFTPDVKVWEPIFTKDGT-------------------F-- 265 (420)
T ss_pred EEEecC-Cceeeeecccccc-ccceee---CCCCcEEEEecCCCCceEEEEEeccCcc-------------------h--
Confidence 999998 8888777644322 233333 7999999999999999999986221111 0
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc--CcceEEEEEC
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLT 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h--~~~I~~v~~~ 317 (1088)
.....+..++||...|..++|+|+...++|.|.||++|+||++-.-....+ ...++......| .+....+..+
T Consensus 266 ----qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD-pk~Lk~g~~pl~aag~~p~RL~ls 340 (420)
T KOG2096|consen 266 ----QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD-PKILKEGSAPLHAAGSEPVRLELS 340 (420)
T ss_pred ----hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC-chHhhcCCcchhhcCCCceEEEeC
Confidence 034567789999999999999999999999999999999998754221111 122211011112 2223356666
Q ss_pred C-CEEEEEeCCCcEEEEcC-CCceeEEEc-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 318 D-SFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 318 ~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
| ..++..+...++.++.. +|+...+++ .|.+ .|.+|+|+++|++++|+| |..+++..
T Consensus 341 P~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 341 PSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCCcEEEeecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeeec-ceeeeeec
Confidence 2 34444555668999988 777766664 4655 799999999999999987 56777764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=193.43 Aligned_cols=230 Identities=16% Similarity=0.246 Sum_probs=177.1
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCC--CCCCCCCC-ccccccceeeeccCCCC
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL--SPNSQYQP-ETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~--~~~~~~~~-~~~~~~~~~~~l~~h~~ 133 (1088)
..+..|+. .+.+.+|+ +|| .++|+++ |.+|+|.|++.-- .......+ +....-..++++-.|.+
T Consensus 106 ~ylt~HK~-~cR~aafs-------~DG----~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 106 KYLTSHKS-PCRAAAFS-------PDG----SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD 173 (430)
T ss_pred EEEeeccc-ceeeeeeC-------CCC----cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC
Confidence 34555665 79999999 898 7777766 9999999998211 01111111 11123467889999999
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.|+++.|+| ....|++|+.|++|+++|+......
T Consensus 174 evn~l~FHP---re~ILiS~srD~tvKlFDfsK~saK------------------------------------------- 207 (430)
T KOG0640|consen 174 EVNDLDFHP---RETILISGSRDNTVKLFDFSKTSAK------------------------------------------- 207 (430)
T ss_pred cccceeecc---hhheEEeccCCCeEEEEecccHHHH-------------------------------------------
Confidence 999999999 8999999999999999997432100
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
+..+ .......|.++.|+|.|.+|+.|.+-.++++||+++.++
T Consensus 208 ---------------------------------rA~K-~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc--- 250 (430)
T KOG0640|consen 208 ---------------------------------RAFK-VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC--- 250 (430)
T ss_pred ---------------------------------HHHH-HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE---
Confidence 0000 111335689999999999999999999999999999644
Q ss_pred CCceeeec-eeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEE-cccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 294 DSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 294 ~~~~~i~~-~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
+-+ ..-.+|.+.|+++.++ +++.++|+.||.|++||- .++++.++ +.|.+..|.+..|..+++++++.|.
T Consensus 251 -----fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 251 -----FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred -----eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 321 2456799999999998 789999999999999998 88998887 5677778999999999999999999
Q ss_pred CCCEEEEEcC-CCCCCcccC
Q 001391 369 DSAIKVHQFQ-AFLPGSLES 387 (1088)
Q Consensus 369 Dg~I~iwd~~-~~~~~~~~~ 387 (1088)
|..+++|.+. +.+++.+.|
T Consensus 326 DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred cceeeeeeecCCceEEEEec
Confidence 9999999994 455555443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=182.88 Aligned_cols=274 Identities=12% Similarity=0.159 Sum_probs=208.3
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec--cCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+.+.+|...|.+++|+. +|..|++|+.|+++++|+++..+...... ++.. .+-.++++ .++..++++++.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~--~~~~d~~atas~dk 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWD--PKHPDLFATASGDK 87 (313)
T ss_pred HHhhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeC--CCCCcceEEecCCc
Confidence 66779999999999999 99999999999999999998876555443 2222 22233333 45667899999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
+|++||.+ .+++........+ =.-+.|+|+|++++.++.|..|.+.
T Consensus 88 ~ir~wd~r---------------------------------~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 88 TIRIWDIR---------------------------------SGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFI 133 (313)
T ss_pred eEEEEEec---------------------------------cCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEE
Confidence 99999999 6777777664434 3457899999999999999999999
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
|.++.+. . ........+.-++|+ +++++.-...|+|.|-.. .-+++..++.|.. ...+|.|+|+|
T Consensus 134 d~r~~~~--------~---~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~G 201 (313)
T KOG1407|consen 134 DARTYKI--------V---NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDG 201 (313)
T ss_pred Eecccce--------e---ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc-ceEEEEECCCC
Confidence 9988543 1 222223445666776 677777777899999998 7899999999998 68899999999
Q ss_pred CEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecC
Q 001391 361 SLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~ 439 (1088)
+++|+|+.|..+.+||++. -+++.+ ...+-+||.+.|+-+|+++++.+.
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~i------------------------------sRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCI------------------------------SRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred ceEeeccccceeeccChhHhhhheee------------------------------ccccCceEEEEeccCcceeeccCc
Confidence 9999999999999999953 222222 123357999999999999999877
Q ss_pred CeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCC
Q 001391 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (1088)
Q Consensus 440 g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~d 493 (1088)
..+.- +-..+++. ++.+.+...+...++++|.. .+||.+..|
T Consensus 252 Dh~ID--IA~vetGd--~~~eI~~~~~t~tVAWHPk~--------~LLAyA~dd 293 (313)
T KOG1407|consen 252 DHFID--IAEVETGD--RVWEIPCEGPTFTVAWHPKR--------PLLAYACDD 293 (313)
T ss_pred cceEE--eEecccCC--eEEEeeccCCceeEEecCCC--------ceeeEEecC
Confidence 76443 33333333 45567778888899997765 677766654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=214.95 Aligned_cols=264 Identities=11% Similarity=0.167 Sum_probs=200.1
Q ss_pred eEEEEe-eeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCC-------------------------
Q 001391 56 LIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL------------------------- 108 (1088)
Q Consensus 56 ~~~~~~-~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~------------------------- 108 (1088)
....++ .|.+ .|+++.|| +|| .+||++| |+.|+||.+....
T Consensus 258 ~~Qe~~~ah~g-aIw~mKFS-------~DG----KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~ 325 (712)
T KOG0283|consen 258 VVQEISNAHKG-AIWAMKFS-------HDG----KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPS 325 (712)
T ss_pred EeeccccccCC-cEEEEEeC-------CCC----ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcc
Confidence 344555 4555 79999999 999 7888877 9999999987510
Q ss_pred --CC----------C-CCCCCc-------cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 109 --SP----------N-SQYQPE-------TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 109 --~~----------~-~~~~~~-------~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
.. . ...++. -....++++.+.||.+.|.++.|+. .++|++++.|.|||+|++...+
T Consensus 326 ~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK----n~fLLSSSMDKTVRLWh~~~~~ 401 (712)
T KOG0283|consen 326 TSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK----NNFLLSSSMDKTVRLWHPGRKE 401 (712)
T ss_pred ccccccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc----CCeeEeccccccEEeecCCCcc
Confidence 00 0 000010 0124567889999999999999995 5688899999999999999999
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
++..+.+.. .+.+++|++ .|+.++++|+.||.|+||++. ..+
T Consensus 402 CL~~F~Hnd--fVTcVaFnP--vDDryFiSGSLD~KvRiWsI~---------------------------------d~~- 443 (712)
T KOG0283|consen 402 CLKVFSHND--FVTCVAFNP--VDDRYFISGSLDGKVRLWSIS---------------------------------DKK- 443 (712)
T ss_pred eeeEEecCC--eeEEEEecc--cCCCcEeecccccceEEeecC---------------------------------cCe-
Confidence 999987554 577888864 578999999999999999997 222
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee----ceeeeccCcceEEEEEC---CCEE
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG----SSVLYGHNARVWDCCLT---DSFI 321 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~----~~~~~~h~~~I~~v~~~---~~~l 321 (1088)
+.....-..-|++++|.|||+..+.|+.+|.+++|+....+. ..... ...-..|. +|+.+.|. +..+
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~-----~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~v 517 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL-----VSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEV 517 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE-----EEeeeEeeccCccccCc-eeeeeEecCCCCCeE
Confidence 222222337899999999999999999999999999988654 11111 00111233 89999997 3568
Q ss_pred EEEeCCCcEEEEcC-CCceeEEEcccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~-~~~~~~~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..+.|..|||+|. +.+++..|+++.. ..=....|+.||++|++++.|..|.+|+...
T Consensus 518 LVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 88899999999999 6778888887654 2234567889999999999999999999854
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=192.57 Aligned_cols=283 Identities=13% Similarity=0.230 Sum_probs=211.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC------------C------eeEEEEeeeCCcceEEEEeccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------------G------TLIRPFQVFHGIRLHGISCNFI 76 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t------------g------~~~~~~~~~~~~~V~~i~~s~~ 76 (1088)
|-+++.|-+|+ || |.++|+|+ |-.|+|.|++. | -+++++-.|-. .|..+.|.
T Consensus 111 HK~~cR~aafs--~D----G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~FH-- 181 (430)
T KOG0640|consen 111 HKSPCRAAAFS--PD----GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDFH-- 181 (430)
T ss_pred cccceeeeeeC--CC----CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceeec--
Confidence 66889999999 99 99999999 89999999861 1 13556655555 69999999
Q ss_pred ccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc
Q 001391 77 NCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1088)
Q Consensus 77 ~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~ 155 (1088)
|.. .+|+++ .|++|+++|+.... .+.-...-.....|.++.|+| .|.+|+.|..
T Consensus 182 -----Pre----~ILiS~srD~tvKlFDfsK~s-------------aKrA~K~~qd~~~vrsiSfHP---sGefllvgTd 236 (430)
T KOG0640|consen 182 -----PRE----TILISGSRDNTVKLFDFSKTS-------------AKRAFKVFQDTEPVRSISFHP---SGEFLLVGTD 236 (430)
T ss_pred -----chh----heEEeccCCCeEEEEecccHH-------------HHHHHHHhhccceeeeEeecC---CCceEEEecC
Confidence 543 455554 49999999998543 122222223457899999999 9999999999
Q ss_pred CCcEEEEEcCCCceEEEecc--CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 156 DNSIRVWDISNSSIILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 156 Dg~V~iWd~~~~~~~~~~~~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
..++++||+++-++...... .....+.++.+ ++.+.+-++|+.||.|++||-.
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y---s~t~~lYvTaSkDG~IklwDGV---------------------- 291 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY---SSTGSLYVTASKDGAIKLWDGV---------------------- 291 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEe---cCCccEEEEeccCCcEEeeccc----------------------
Confidence 99999999999888655431 22333455555 7889999999999999999977
Q ss_pred CceeEecccccceeeeEEEe-CCCC-CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc-
Q 001391 234 FKCFKLQDQQHTAVNLFRLV-GHEG-SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR- 310 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~-gh~~-~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~- 310 (1088)
.++++..+. .|.+ .|.+..|..+++++++.+.|..|++|.+.+++. +..++-.|-+++
T Consensus 292 -----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~--------l~~YtGAg~tgrq 352 (430)
T KOG0640|consen 292 -----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM--------LKEYTGAGTTGRQ 352 (430)
T ss_pred -----------cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce--------EEEEecCCcccch
Confidence 556665553 5654 699999999999999999999999999999754 321122222221
Q ss_pred --eEEEEEC--CCEEEEEe-CCCcEEEEcC-CCceeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 311 --VWDCCLT--DSFIITAG-EDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 311 --I~~v~~~--~~~l~sg~-~Dg~i~vWd~-~~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
-+...|+ ..+++.-. ..+.++-||. ++..+..+ -+|.+ ++..+.-+|.+.-++||+.|..+++|--
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence 2334454 45665554 4578999999 44444433 47888 7999999999999999999999999964
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=210.55 Aligned_cols=348 Identities=17% Similarity=0.254 Sum_probs=237.2
Q ss_pred eEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 89 FEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
++|.+ +.|+.|++|++.......+ .....++..|.+||++++..- +++.|++++.|-+|++|+...+
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s---------~~~~asme~HsDWVNDiiL~~---~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPS---------TPYIASMEHHSDWVNDIILCG---NGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcc---------cchhhhhhhhHhHHhhHHhhc---CCCceEEecCCceEEEeecccC
Confidence 44544 4599999999986541111 235778889999999999988 8889999999999999986432
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
. .-
T Consensus 106 ~-----------------------------------------------------------------------------~~ 108 (735)
T KOG0308|consen 106 N-----------------------------------------------------------------------------TF 108 (735)
T ss_pred c-----------------------------------------------------------------------------ch
Confidence 1 01
Q ss_pred eeEEEeCCCCCEEEEEE-cCCCCEEEEEECCCcEEEEEcCCCcc--cCCCCceeeeceee-eccCcceEEEEEC--CCEE
Q 001391 248 NLFRLVGHEGSIFRIEW-SSCGSKLVSVSDDRSARIWEVRAEYW--KDSDSIEEVGSSVL-YGHNARVWDCCLT--DSFI 321 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~-sp~g~~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~i~~~~~-~~h~~~I~~v~~~--~~~l 321 (1088)
++..+..|.+-|.|+++ .++...++|||-|+.|.+||++++.. ..+....... .+ .|+...|.+++.. +..|
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~--sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN--SLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc--cCCCCCccceeeeecCCcceEE
Confidence 12345679999999999 78888999999999999999997622 1111111112 23 3888999999998 4599
Q ss_pred EEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcc
Q 001391 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTE 399 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 399 (1088)
++|+..+.+++||. +++.+..+++|.. .|..+..++||..+++++.||+|++||+.. .++.++..
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v------------ 253 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV------------ 253 (735)
T ss_pred EecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe------------
Confidence 99999999999999 7888889999998 699999999999999999999999999954 44444333
Q ss_pred eEEeeeCCCccceeeccCCCCceEEEEeccC-CeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCC
Q 001391 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPK 478 (1088)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 478 (1088)
|.+.|.++..+|+ ..++.+..+|.|+.-++.+... ...+ ..++.++..+....
T Consensus 254 ------------------H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tli--ck~daPv~~l~~~~---- 307 (735)
T KOG0308|consen 254 ------------------HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLI--CKEDAPVLKLHLHE---- 307 (735)
T ss_pred ------------------ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEe--ecCCCchhhhhhcc----
Confidence 3345667766664 3788888999999877766422 1112 12233443333321
Q ss_pred CcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 479 YPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 479 ~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
+++-+=+++.|+.|+-|...... .+++.+.+.+ -+.+....+.+....+.
T Consensus 308 ----~~~~~WvtTtds~I~rW~~~~~~------------------------~l~~s~~~~~-~~T~~~~~~~~~~~tp~- 357 (735)
T KOG0308|consen 308 ----HDNSVWVTTTDSSIKRWKLEPDI------------------------ALSVSGDLDF-FSTDSNNHSCDLTNTPD- 357 (735)
T ss_pred ----ccCCceeeeccccceecCCcccc------------------------ccccCCCCCc-ccccCCCccccccCCCc-
Confidence 12333556678888888654211 1233333333 22333333343321110
Q ss_pred ccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 559 ~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
. ...-+..|.--++-.|.+.++|=+..|++.+||+-..
T Consensus 358 ---------------~-vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 358 ---------------S-VIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred ---------------e-eccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 0 0011223445555678899999999999999998764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-20 Score=184.93 Aligned_cols=280 Identities=19% Similarity=0.255 Sum_probs=201.9
Q ss_pred eCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc
Q 001391 253 VGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
..-++.|.+|+|||. ..+++.+|.|++||+|++.... ..+. .....|.++|.+++|+ +..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-------~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-------QLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCC-------cccc-hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 346788999999994 4556689999999999998742 1222 2677899999999998 789999999999
Q ss_pred EEEEcCCCceeEEEcccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCC
Q 001391 330 CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 330 i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~--~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
+++||+....+.++..|.+ +|..+.|-+... .|+||+.|.+|+.||.+.. .++.++..|+
T Consensus 96 ~k~wDL~S~Q~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-----------------~pv~t~~LPe 157 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-----------------NPVATLQLPE 157 (347)
T ss_pred eEEEEccCCCeeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCC-----------------Ceeeeeeccc
Confidence 9999995557888889998 899999977655 8999999999999999642 2344444443
Q ss_pred CccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeE
Q 001391 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (1088)
Q Consensus 408 ~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~l 487 (1088)
.+.++..- ...+++++.+..|..+++.+..+.. +....+....+.|+++..+. +..
T Consensus 158 -------------RvYa~Dv~-~pm~vVata~r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~--------~~~ 213 (347)
T KOG0647|consen 158 -------------RVYAADVL-YPMAVVATAERHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDK--------DGF 213 (347)
T ss_pred -------------eeeehhcc-CceeEEEecCCcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecC--------Cce
Confidence 22222222 2256778888889888886654422 22233345667777775543 666
Q ss_pred EEecCCCCEEEEEEcCCCcCcceeeeeeeeccccc---eeeeE-EEeecCCCeEEEEECCCCeEEEEecCCCCCcccccC
Q 001391 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER---QLLGT-YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYES 563 (1088)
Q Consensus 488 a~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~ 563 (1088)
|+|+-.|++-|..++.+.. +..+.++++..... .+..+ -.+|.|.-.+|+|++.||++..||-+....
T Consensus 214 alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k------ 285 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK------ 285 (347)
T ss_pred EeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh------
Confidence 9999999999999987644 44555556653221 12221 146889889999999999999999763211
Q ss_pred CcccceeeeeeeccccCceEEEEEeeeCCCEEEEEc
Q 001391 564 SKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599 (1088)
Q Consensus 564 ~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs 599 (1088)
+ ++ ...|..+|+|.+|+.+|.++|-+.
T Consensus 286 -------L-k~-s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 286 -------L-KT-SETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred -------h-hc-cCcCCCccceeEecCCCCEEEEEe
Confidence 1 11 136788999999998888776553
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=198.36 Aligned_cols=308 Identities=16% Similarity=0.212 Sum_probs=220.5
Q ss_pred eeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe-ccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+..+..|.-.|.+|+++| ++.++++++.|++|.-|++.+++...-+ ..++ . .
T Consensus 135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~e-----------------v-~------ 187 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDE-----------------V-L------ 187 (479)
T ss_pred ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccch-----------------h-h------
Confidence 566778999999999999 9999999999999999999888654221 1110 0 0
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
.. .+.+...- ++|...|.+++.++||++|++|+.|+.|.|
T Consensus 188 -----k~----------------------------------~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I 228 (479)
T KOG0299|consen 188 -----KS----------------------------------HGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI 228 (479)
T ss_pred -----hh----------------------------------ccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence 00 00111111 489999999999999999999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
|+..+. +.++ .+.+|...|.+++|. .+.+++++.|+++++|++ ....+.++.+|+. .|.+|....-
T Consensus 229 w~~~t~--------ehv~--~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~r 297 (479)
T KOG0299|consen 229 WDCDTL--------EHVK--VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSR 297 (479)
T ss_pred ecCccc--------chhh--cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcc
Confidence 999995 3443 789999999999998 578999999999999999 5667788999998 7999998888
Q ss_pred CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecC
Q 001391 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~ 439 (1088)
++.+-+|+.|+++++|++..... . .+.++.+.+-|++|-.+.+++.++.+
T Consensus 298 eR~vtVGgrDrT~rlwKi~eesq----------------l--------------ifrg~~~sidcv~~In~~HfvsGSdn 347 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEESQ----------------L--------------IFRGGEGSIDCVAFINDEHFVSGSDN 347 (479)
T ss_pred cceEEeccccceeEEEeccccce----------------e--------------eeeCCCCCeeeEEEecccceeeccCC
Confidence 88777788999999999932110 0 12233467899999999999999999
Q ss_pred CeEEEEEeccCCcceeEEeeeecCCc--------ceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCccee
Q 001391 440 GYLYHTKLCDMDSVNWNKILQVSEGM--------PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS 511 (1088)
Q Consensus 440 g~i~~~~~~~~~~~~~~~~~~~~~~~--------~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~ 511 (1088)
|.|..|.+.......-.++.++-... -|.++++. +..+++|+|+.+|.|++|.+..+.. .+.
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i--------~~sdL~asGS~~G~vrLW~i~~g~r--~i~ 417 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI--------PGSDLLASGSWSGCVRLWKIEDGLR--AIN 417 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCCccccccccceeeeEec--------ccCceEEecCCCCceEEEEecCCcc--ccc
Confidence 99997776655433222222211111 34555553 4459999999999999999987632 111
Q ss_pred eeeeeeccccceeeeEEEeecCCCeEEEEE-CCCCeEEEEecC
Q 001391 512 FTFTWSAGIERQLLGTYWCKSLGHRFIFTA-DPKGRLKLWQLC 553 (1088)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~-~~dg~i~vwd~~ 553 (1088)
+-..+ .-.+-+.. .+|+++|+.+++| +..-.+--|-..
T Consensus 418 ~l~~l--s~~GfVNs--l~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 418 LLYSL--SLVGFVNS--LAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred eeeec--ccccEEEE--EEEccCCCEEEEecccccccceeeEe
Confidence 11111 11121222 4688899866655 444455455443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-19 Score=169.04 Aligned_cols=285 Identities=15% Similarity=0.204 Sum_probs=216.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCC------C--------eeEEEEeeeCCcceEEEEecccccccCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEA------G--------TLIRPFQVFHGIRLHGISCNFINCTEGS 82 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~t------g--------~~~~~~~~~~~~~V~~i~~s~~~~~~~~ 82 (1088)
..|.+|+|. |. +.+.|+|++ .+.+|--... + ..+.+-..|+...|.+.+|| |
T Consensus 33 qairav~fh--p~----g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws-------~ 99 (350)
T KOG0641|consen 33 QAIRAVAFH--PA----GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS-------P 99 (350)
T ss_pred hheeeEEec--CC----CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-------C
Confidence 458899999 99 899999995 7888765422 1 22233334555589999999 8
Q ss_pred CccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC-CCCEEEEEEc-CCcE
Q 001391 83 VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGCS-DNSI 159 (1088)
Q Consensus 83 d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~-d~~~lasgs~-Dg~V 159 (1088)
+| .++++++ |++|++..++.+.-+. .-....+.-|.+.|.+++|....+ .+.+|++++. |..|
T Consensus 100 ~g----eliatgsndk~ik~l~fn~dt~~~----------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 100 CG----ELIATGSNDKTIKVLPFNADTCNA----------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cc----CeEEecCCCceEEEEecccccccc----------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 88 7777765 8999999887543111 112234567999999999976322 3457787753 7778
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
.+=|-.+++....+.++.+-++ ++- +-++.++++|+.|.+|++||++.
T Consensus 166 y~tdc~~g~~~~a~sghtghil-aly----swn~~m~~sgsqdktirfwdlrv--------------------------- 213 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHIL-ALY----SWNGAMFASGSQDKTIRFWDLRV--------------------------- 213 (350)
T ss_pred EEeecCCCCcceeecCCcccEE-EEE----EecCcEEEccCCCceEEEEeeec---------------------------
Confidence 8888888988888887776543 222 23688999999999999999982
Q ss_pred cccccceeeeEEEe----C---CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 240 QDQQHTAVNLFRLV----G---HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~----g---h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
...+..+. + -...|.+++..|.|++|++|-.|....+||++.+ +.++ .+..|...|.
T Consensus 214 ------~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--------r~iq--~f~phsadir 277 (350)
T KOG0641|consen 214 ------NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--------RMIQ--RFHPHSADIR 277 (350)
T ss_pred ------cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--------ceee--eeCCCcccee
Confidence 22222221 1 1256999999999999999999999999999986 4454 7889999999
Q ss_pred EEEECC--CEEEEEeCCCcEEEEcCCCce-----eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 313 DCCLTD--SFIITAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 313 ~v~~~~--~~l~sg~~Dg~i~vWd~~~~~-----~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
|+.|++ .++++++.|..|++=|+.|.. +.....|..+ +-.+.|+|+.--+++.+.|.++.+|-++
T Consensus 278 ~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 278 CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc-eEEEEecCccceeeeccCcceEEEeccC
Confidence 999994 689999999999999996643 3345678875 7788999999889999999999999764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=168.11 Aligned_cols=257 Identities=16% Similarity=0.267 Sum_probs=187.9
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCC-----CCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL-----SPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~-----~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
+.+.|..++|. |.| .+.++++ .+++||-....-. ....++.| ..+.+.-+.|.+.|+|
T Consensus 31 dsqairav~fh-------p~g----~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp-----~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 31 DSQAIRAVAFH-------PAG----GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP-----SVLCKRNKHHKGSIYC 94 (350)
T ss_pred chhheeeEEec-------CCC----ceEEeccCCceEEEEccccccCcccccccccCCC-----eEEeeeccccCccEEE
Confidence 34579999999 777 5555554 6888887543211 00111111 2233445678899999
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcCCCceE-----EEeccCCceeEEEEeeecCCCCC-cEEEEEe-cCCeEEEEEe
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-----LEVHSPERCLLYSMKLWGDNLEA-LRIASGT-IYNEIIVWKV 210 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~-----~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~-~dg~I~vwd~ 210 (1088)
.+|+| +|++||+|+.|.+|++.-++...+. .++..+.+ .+..++|...+..+ .+|++++ .|..|++-|.
T Consensus 95 ~~ws~---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg-tirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 95 TAWSP---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG-TIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred EEecC---ccCeEEecCCCceEEEEecccccccccCcceeeeecCC-ceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 99999 9999999999999999776544332 12222322 35566666554443 4555543 5677888888
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
. .++.++.+.||++.|.++ ++=++-.+++|+.|.+||+||++-..+
T Consensus 171 ~---------------------------------~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~ 216 (350)
T KOG0641|consen 171 G---------------------------------RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC 216 (350)
T ss_pred C---------------------------------CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce
Confidence 7 788899999999999987 334678899999999999999987544
Q ss_pred cCCCCceeeeceeeec---cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 291 KDSDSIEEVGSSVLYG---HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~---h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
...+.. .+.+ ....|.+++.. +.+|++|-+|..+.+||+ .+++++.+..|.. .|.++.|+|...+++
T Consensus 217 -----v~~l~~-~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yll 289 (350)
T KOG0641|consen 217 -----VNTLDN-DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLL 289 (350)
T ss_pred -----eeeccC-cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEE
Confidence 222221 1111 12467888887 789999999999999999 6789999999998 599999999999999
Q ss_pred EEeCCCCEEEEEcCCCC
Q 001391 365 TAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 365 tg~~Dg~I~iwd~~~~~ 381 (1088)
|++.|..|++-|+++..
T Consensus 290 t~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 290 TCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EecccceEEEeecccch
Confidence 99999999999997643
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=182.23 Aligned_cols=275 Identities=17% Similarity=0.267 Sum_probs=195.9
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~ 274 (1088)
.|++|+....|.-+++.-.+ ..... ....+..+++.+..|.++|++++. ++.+++||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-~~~~~--------------------s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSG 59 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-KGCTD--------------------SVKPTLKPLFAFSAHAGSITALAV--SGPYVASG 59 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-ccccc--------------------ccceeeeccccccccccceeEEEe--cceeEecc
Confidence 46778888888777776111 00000 000134567788899999999998 58999999
Q ss_pred ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-C---CEEEEEeCCCcEEEEcC-CCceeEEEcccCCC
Q 001391 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (1088)
Q Consensus 275 s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~---~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~ 349 (1088)
|.|-+|+|||+.... .++ .+..|.+.|+++.|. + +.|++|++||.|.+|+. .-.++..+++|.++
T Consensus 60 ssDetI~IYDm~k~~--------qlg--~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRK--------QLG--ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CCCCcEEEEeccchh--------hhc--ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 999999999999853 344 788899999999998 3 37999999999999999 67889999999995
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEec
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 428 (1088)
|+.++++|.+++.++.|.|+.+++|++ +++. ..+..+ . .....+.|+
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~----------------a~v~~L--~-------------~~at~v~w~ 177 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV----------------AFVLNL--K-------------NKATLVSWS 177 (362)
T ss_pred -cceeEecCCCceEEEEcCCceeeeehhhcCcc----------------ceeecc--C-------------CcceeeEEc
Confidence 999999999999999999999999999 3321 111111 1 123447899
Q ss_pred cCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc
Q 001391 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1088)
Q Consensus 429 ~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~ 508 (1088)
|+|..++......|-.+.+.+..... .+ .....+.++-+ ..+..+++|..++.|++||.+......
T Consensus 178 ~~Gd~F~v~~~~~i~i~q~d~A~v~~--~i---~~~~r~l~~~~---------l~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 178 PQGDHFVVSGRNKIDIYQLDNASVFR--EI---ENPKRILCATF---------LDGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred CCCCEEEEEeccEEEEEecccHhHhh--hh---hccccceeeee---------cCCceEEEecCCceEEEeccCCCccce
Confidence 99876665555555544433322111 11 11122444333 245789999999999999988643221
Q ss_pred ceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
....+..++.+++....+++.+|+|++.||.|++||++..
T Consensus 244 -------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 -------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -------eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 1223444566655556788999999999999999999855
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=184.11 Aligned_cols=268 Identities=19% Similarity=0.173 Sum_probs=203.8
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
..|+.|.|+ |. ...|++++ ||++++||.....+...++. +.++.+.+|. ++. ..++..-|
T Consensus 14 d~IS~v~f~--~~----~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~-------d~~----~~~~G~~d 74 (323)
T KOG1036|consen 14 DGISSVKFS--PS----SSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFA-------DES----TIVTGGLD 74 (323)
T ss_pred hceeeEEEc--Cc----CCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeecc-------CCc----eEEEeccC
Confidence 569999999 87 44555555 99999999998876666663 4479999998 442 34444449
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.|+.+|+.... ...+..|...|.||.+++ ....+++||.|++|++||.........+..+
T Consensus 75 g~vr~~Dln~~~----------------~~~igth~~~i~ci~~~~---~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 75 GQVRRYDLNTGN----------------EDQIGTHDEGIRCIEYSY---EVGCVISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred ceEEEEEecCCc----------------ceeeccCCCceEEEEeec---cCCeEEEcccCccEEEEeccccccccccccC
Confidence 999999999654 234557999999999999 7788999999999999999886666655544
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
. .+|++.. .+..|+.|+.+..+.+||+++.+. ....+-..-+
T Consensus 136 k--kVy~~~v-----~g~~LvVg~~~r~v~iyDLRn~~~-------------------------------~~q~reS~lk 177 (323)
T KOG1036|consen 136 K--KVYCMDV-----SGNRLVVGTSDRKVLIYDLRNLDE-------------------------------PFQRRESSLK 177 (323)
T ss_pred c--eEEEEec-----cCCEEEEeecCceEEEEEcccccc-------------------------------hhhhccccce
Confidence 4 5777754 578999999999999999982110 0111122345
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC---------cceEEEEECC--CEEEEEe
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFIITAG 325 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---------~~I~~v~~~~--~~l~sg~ 325 (1088)
-.+.+|++-|++.-++.+|-||.|.+=.++.... .+..+ +.+..|. -+|.+++|++ +.|+||+
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~-----~~skk-yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE-----AQSKK-YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchH-----Hhhhc-eeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 6789999999988899999999988766555321 11112 3555553 2689999994 7899999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.||.|.+||+ +.+.+..+..... .|.+++|+.+|..||+++.
T Consensus 252 sDG~V~~Wd~~~rKrl~q~~~~~~-SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRLKQLAKYET-SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCceEEEccCcchhhhhhccCCCC-ceEEEEeccCCCeEEEEec
Confidence 9999999999 7788888877765 6999999999999999874
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-20 Score=204.96 Aligned_cols=266 Identities=18% Similarity=0.275 Sum_probs=213.6
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
..|+++-+..|.+|+-.... ...+..+ +.+.|+++.|++ +|.+||+|..+|.|.|||..+.+
T Consensus 189 n~laValg~~vylW~~~s~~-------------v~~l~~~--~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k 250 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGS-------------VTELCSF--GEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQK 250 (484)
T ss_pred CeEEEEecceEEEEecCCCc-------------eEEeEec--CCCceEEEEECC---CCCEEEEeecCCeEEEEehhhcc
Confidence 58888889999999987543 2333333 278999999999 99999999999999999999998
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
.+..+..++...+-++++ ++..+.+|+.++.|..+|++ ....
T Consensus 251 ~~~~~~~~h~~rvg~laW-----~~~~lssGsr~~~I~~~dvR---------------------------------~~~~ 292 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAW-----NSSVLSSGSRDGKILNHDVR---------------------------------ISQH 292 (484)
T ss_pred ccccccCCcCceeEEEec-----cCceEEEecCCCcEEEEEEe---------------------------------cchh
Confidence 888887755555555554 47789999999999999998 2222
Q ss_pred eE-EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEE
Q 001391 249 LF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA 324 (1088)
Q Consensus 249 ~~-~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg 324 (1088)
.. .+.+|...|.++.|++|+.++++|+.|+.+.|||.... ++. +.+..|.+.|.+++|+ .++||+|
T Consensus 293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~--------~p~--~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP--------EPK--FTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc--------ccc--EEEeccceeeeEeeeCCCccCceEEc
Confidence 22 37899999999999999999999999999999999553 223 3889999999999998 5899987
Q ss_pred e--CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEE--eCCCCEEEEEcCCCCCCcccCCccccccCCCcc
Q 001391 325 G--EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399 (1088)
Q Consensus 325 ~--~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg--~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 399 (1088)
+ .|+.|++||. +|+.+..+.... .|.+|.|++..+-|+++ -.++.|.||++...
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vdtgs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------------------- 421 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVDTGS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------------------- 421 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccccCC--ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-------------------
Confidence 6 7899999999 888888876655 49999999988655543 35778999998431
Q ss_pred eEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEeccCC
Q 001391 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~ 451 (1088)
..+..+.+|...|-.++++||| .+++++.|..+..|++++..
T Consensus 422 ----------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 422 ----------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ----------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 1233455677889999999998 55566788889988888753
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-20 Score=215.21 Aligned_cols=320 Identities=18% Similarity=0.276 Sum_probs=224.4
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEe--cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~--~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
.|....++++.. .|++..+++|+ .|+.++||+.+ +... ....++.. -.+.+..+
T Consensus 10 ~H~~~~IfSIdv---~pdg~~~aTgGq~~d~~~~iW~~~-----~vl~---------------~~~~~~~~-l~k~l~~m 65 (942)
T KOG0973|consen 10 NHNEKSIFSIDV---HPDGVKFATGGQVLDGGIVIWSQD-----PVLD---------------EKEEKNEN-LPKHLCTM 65 (942)
T ss_pred ccCCeeEEEEEe---cCCceeEecCCccccccceeeccc-----cccc---------------hhhhhhcc-cchhheee
Confidence 344555888887 68899999999 89999999986 1110 00000000 24566778
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc----------ccCCCCceeeeceeeeccCcceEEEEEC--CCE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY----------WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~----------~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~ 320 (1088)
..|.+.|.|+.|+|||++||+||+|+.|.+|...... ....+.-+.+ ..+.+|...|.+++|+ +.+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~--~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV--SILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE--EEEecCCCccceeccCCCccE
Confidence 8999999999999999999999999999999988410 0011112334 3889999999999999 689
Q ss_pred EEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCc
Q 001391 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRT 398 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~ 398 (1088)
+++++.|++|.+|+. +.+.+..+++|.+ .|-.+.|.|-|+++++-+.|++|++|+... ...+.+.++-
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf--------- 213 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF--------- 213 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch---------
Confidence 999999999999999 7899999999999 699999999999999999999999999643 1111111100
Q ss_pred ceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec--CCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCC
Q 001391 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (1088)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 476 (1088)
.+ ......++.+.|+|||+++++.+ ++....+.+.+.++.+...-+-||+ .++.++.+.|.-
T Consensus 214 -------~~--------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~-~p~evvrFnP~l 277 (942)
T KOG0973|consen 214 -------EE--------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHS-APVEVVRFNPKL 277 (942)
T ss_pred -------hh--------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCC-CceEEEEeChHH
Confidence 00 01123678999999999998753 2333333344443333223345664 488888887653
Q ss_pred C----C-CcCCCCC----eEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeE
Q 001391 477 P----K-YPCGIDD----WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1088)
Q Consensus 477 ~----~-~s~~~~~----~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i 547 (1088)
. . -.....+ .+|+|+.|+.|.||..... .|...... -....+.. ++++|||-.|++++.||+|
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~--RPl~vi~~----lf~~SI~D--msWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP--RPLFVIHN----LFNKSIVD--MSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEecCCC--Cchhhhhh----hhcCceee--eeEcCCCCeEEEEecCCeE
Confidence 0 0 0011122 7999999999999987433 33222111 11222444 5689999999999999999
Q ss_pred EEEecCC
Q 001391 548 KLWQLCD 554 (1088)
Q Consensus 548 ~vwd~~~ 554 (1088)
.+..++.
T Consensus 350 ~~i~Fee 356 (942)
T KOG0973|consen 350 ALIHFEE 356 (942)
T ss_pred EEEEcch
Confidence 9998874
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=208.44 Aligned_cols=226 Identities=13% Similarity=0.106 Sum_probs=164.9
Q ss_pred eeeeeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCCC-------eeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 16 YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 16 ~~~~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~tg-------~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
|.++|.+++|+ | + +.+|++|+ |++|+|||+.++ ..+..+.+|.. .|.+++|+ |++.
T Consensus 74 H~~~V~~v~fs--P~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~-------P~~~- 138 (493)
T PTZ00421 74 QEGPIIDVAFN--PFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFH-------PSAM- 138 (493)
T ss_pred CCCCEEEEEEc--CCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeC-------cCCC-
Confidence 66889999999 9 6 67888887 799999999765 34667777665 79999999 5431
Q ss_pred eeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC
Q 001391 87 VTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 87 ~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~ 165 (1088)
.+|++ +.|++|+|||+.. .+.+..+.+|.+.|.+++|+| ++.+|++++.|++|++||++
T Consensus 139 --~iLaSgs~DgtVrIWDl~t---------------g~~~~~l~~h~~~V~sla~sp---dG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 139 --NVLASAGADMVVNVWDVER---------------GKAVEVIKCHSDQITSLEWNL---DGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred --CEEEEEeCCCEEEEEECCC---------------CeEEEEEcCCCCceEEEEEEC---CCCEEEEecCCCEEEEEECC
Confidence 35554 5599999999985 345677889999999999999 99999999999999999999
Q ss_pred CCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe----cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 166 NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 166 ~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~----~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
+++.+.++..+.......+.+ .+++..+++++ .|+.|++||++.
T Consensus 199 sg~~v~tl~~H~~~~~~~~~w---~~~~~~ivt~G~s~s~Dr~VklWDlr~----------------------------- 246 (493)
T PTZ00421 199 DGTIVSSVEAHASAKSQRCLW---AKRKDLIITLGCSKSQQRQIMLWDTRK----------------------------- 246 (493)
T ss_pred CCcEEEEEecCCCCcceEEEE---cCCCCeEEEEecCCCCCCeEEEEeCCC-----------------------------
Confidence 999888887665433222222 23445555543 479999999971
Q ss_pred cccceeeeEEEeC-CCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC
Q 001391 242 QQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS 319 (1088)
Q Consensus 242 ~~~~~~~~~~~~g-h~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~ 319 (1088)
...++..... +...+....|++++.++++++ .|+.|++||+.++.. +. .....+...+..++|.+.
T Consensus 247 ---~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~--------~~-~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 247 ---MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL--------TF-CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ---CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce--------EE-EeeccCCCCCcceEeccc
Confidence 1123333332 334566678999999998887 599999999988532 21 122334455667777654
Q ss_pred E
Q 001391 320 F 320 (1088)
Q Consensus 320 ~ 320 (1088)
.
T Consensus 315 ~ 315 (493)
T PTZ00421 315 W 315 (493)
T ss_pred c
Confidence 3
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-19 Score=206.53 Aligned_cols=218 Identities=15% Similarity=0.190 Sum_probs=161.4
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCCCc------
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSS------ 168 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~------ 168 (1088)
++.|++|+... ...+..+.+|.+.|.+++|+| + +.+||+|+.|++|++||+.++.
T Consensus 53 ~gvI~L~~~~r---------------~~~v~~L~gH~~~V~~lafsP---~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 53 IGAIRLENQMR---------------KPPVIKLKGHTSSILDLQFNP---CFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred eeEEEeeecCC---------------CceEEEEcCCCCCEEEEEEcC---CCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 46788887653 346778899999999999999 6 6899999999999999997642
Q ss_pred --eEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 169 --IILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 169 --~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
.+..+.+|. ..+.++++ +|++. ++++++.|++|++||+. .
T Consensus 115 ~~p~~~L~gH~-~~V~sVaf---~P~g~~iLaSgS~DgtIrIWDl~---------------------------------t 157 (568)
T PTZ00420 115 KDPQCILKGHK-KKISIIDW---NPMNYYIMCSSGFDSFVNIWDIE---------------------------------N 157 (568)
T ss_pred ccceEEeecCC-CcEEEEEE---CCCCCeEEEEEeCCCeEEEEECC---------------------------------C
Confidence 123344443 34566666 45555 56789999999999998 4
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE-----EEEC--C
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-----CCLT--D 318 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~-----v~~~--~ 318 (1088)
+..+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++. .+. .+.+|.+.+.+ ..|+ +
T Consensus 158 g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--------~i~--tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 158 EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--------IAS--SFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--------EEE--EEecccCCceeEEEEeeeEcCCC
Confidence 45555554 56789999999999999999999999999999853 333 67788765432 3343 5
Q ss_pred CEEEEEeCCC----cEEEEcCC--CceeEEEcccCCC-CeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 319 SFIITAGEDC----TCRVWGSD--GKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 319 ~~l~sg~~Dg----~i~vWd~~--~~~~~~~~~h~~~-~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+|++++.|+ +|++||+. ++++..+..+... .+......+++.++++|+.|++|++|++..
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 7889888774 79999993 5666655433321 233333355688999999999999999953
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=181.31 Aligned_cols=279 Identities=19% Similarity=0.258 Sum_probs=206.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vW 333 (1088)
.++.|.+|.|+|.+..|+.++.||++++|++..... .....|..++.+++|. ...+++|+-||.|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------KLKFKHGAPLLDCAFADESTIVTGGLDGQVRRY 80 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------hhheecCCceeeeeccCCceEEEeccCceEEEE
Confidence 367899999999999999999999999999988533 2566789999999998 5899999999999999
Q ss_pred cCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCcccee
Q 001391 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1088)
Q Consensus 334 d~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1088)
|++......+..|.. +|.++.+++....+++||.|++|++||.+..... ..
T Consensus 81 Dln~~~~~~igth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~-----------------~~----------- 131 (323)
T KOG1036|consen 81 DLNTGNEDQIGTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV-----------------GT----------- 131 (323)
T ss_pred EecCCcceeeccCCC-ceEEEEeeccCCeEEEcccCccEEEEeccccccc-----------------cc-----------
Confidence 997777777888888 8999999998889999999999999999642110 00
Q ss_pred eccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCC
Q 001391 414 LTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~d 493 (1088)
.+ ..+.|.++.... +++++++.+..++.|++....... +.....-..++.|+++.|+. .-.+.++-|
T Consensus 132 -~d-~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~--------eGy~~sSie 198 (323)
T KOG1036|consen 132 -FD-QGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNG--------EGYVVSSIE 198 (323)
T ss_pred -cc-cCceEEEEeccC-CEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCC--------CceEEEeec
Confidence 00 112566776664 489999999999977776544322 22233345677888876643 668889999
Q ss_pred CCEEEEEEcCCCcCcceeeeeeeeccccc--eeeeE--EEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccce
Q 001391 494 GNMTIVRVVGDVHTPQLSFTFTWSAGIER--QLLGT--YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (1088)
Q Consensus 494 g~I~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 569 (1088)
|+|.+=.++........++.++++..... .+.-. ...|+|--++|+||+.||.|.+||+...+. +
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-----------l 267 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-----------L 267 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-----------h
Confidence 99988666655334444555556654332 22111 135788888999999999999999875432 1
Q ss_pred eeeeeeccccCceEEEEEeeeCCCEEEEEcCC
Q 001391 570 FLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601 (1088)
Q Consensus 570 ~l~~~~~~~h~~~It~l~~spdg~~LatGs~d 601 (1088)
. +| ......|.+++|+.||..||+|+.-
T Consensus 268 ~---q~-~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 268 K---QL-AKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred h---hc-cCCCCceEEEEeccCCCeEEEEech
Confidence 1 21 1335679999999999999999873
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=182.12 Aligned_cols=249 Identities=19% Similarity=0.282 Sum_probs=187.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
-||.+... =.|+ ++..+++|++|+|+.++... ..+++..|.||.++|+.++|... .-
T Consensus 13 ~IHda~lD-------yygk---rlATcsSD~tVkIf~v~~n~------------~s~ll~~L~Gh~GPVwqv~wahP-k~ 69 (299)
T KOG1332|consen 13 MIHDAQLD-------YYGK---RLATCSSDGTVKIFEVRNNG------------QSKLLAELTGHSGPVWKVAWAHP-KF 69 (299)
T ss_pred hhhHhhhh-------hhcc---eeeeecCCccEEEEEEcCCC------------CceeeeEecCCCCCeeEEeeccc-cc
Confidence 57777665 3342 56666779999999998654 24789999999999999999431 26
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
|.+||+++.||.|.||.-++++..+... ......+.++++.+ ..-|..|+.++.||.|.|.+.+...
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wap-heygl~LacasSDG~vsvl~~~~~g----------- 137 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAP-HEYGLLLACASSDGKVSVLTYDSSG----------- 137 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccc-cccceEEEEeeCCCcEEEEEEcCCC-----------
Confidence 7899999999999999998885433222 11223344555433 3457899999999999999988210
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC---C-----------CEEEEEECCCcEEEEEcCCCccc
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---G-----------SKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~---g-----------~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
....-.....|+-.|++++|.|. | ++|+||+.|..|+||+....+.
T Consensus 138 -------------------~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w- 197 (299)
T KOG1332|consen 138 -------------------GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW- 197 (299)
T ss_pred -------------------CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-
Confidence 01112234689999999999985 4 5799999999999999988633
Q ss_pred CCCCceeeeceeeeccCcceEEEEECC------CEEEEEeCCCcEEEEcCCC--c--eeEEEcccCCCCeEEEEEcCCCC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG--K--QLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~~------~~l~sg~~Dg~i~vWd~~~--~--~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
... .++.+|...|.+++|.| .+|+++++||++.||..+. + ....++.... .+|++.|+..|+
T Consensus 198 ------~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn 269 (299)
T KOG1332|consen 198 ------KLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGN 269 (299)
T ss_pred ------hhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEEecccc
Confidence 122 26899999999999973 5799999999999999832 1 1223344444 799999999999
Q ss_pred EEEEEeCCCCEEEEEcC
Q 001391 362 LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~ 378 (1088)
.|+.++.|+.|.+|..+
T Consensus 270 ~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 270 ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEEecCCcEEEEEEeC
Confidence 99999999999999763
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=177.11 Aligned_cols=288 Identities=12% Similarity=0.130 Sum_probs=205.8
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT- 200 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~- 200 (1088)
++..+.+....+.|.++.|++ +|.+|++++.|.+++|||..+++.+.++..+... +-.++|. .....++.++
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Ft---h~~~~~i~sSt 76 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFT---HHSNTVIHSST 76 (311)
T ss_pred cccccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeeccccc-ccEEEEe---cCCceEEEccC
Confidence 444555666778999999999 9999999999999999999999999988765432 1122332 2223333333
Q ss_pred -cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 201 -IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 201 -~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
.|.+|+.-++. +.+.++.|.||...|.+++.+|-+..++|++.|++
T Consensus 77 k~d~tIryLsl~---------------------------------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t 123 (311)
T KOG1446|consen 77 KEDDTIRYLSLH---------------------------------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT 123 (311)
T ss_pred CCCCceEEEEee---------------------------------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCe
Confidence 48899999998 88899999999999999999999999999999999
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC---CCceeEEEccc---CCCCe
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---DGKQLKMIKEH---IGRGI 351 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~---~~~~~~~~~~h---~~~~V 351 (1088)
||+||++..++ .. .+ +...-..++|. |-++|++.....|++||+ +..+..++.-. .. ..
T Consensus 124 vrLWDlR~~~c--------qg--~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~-ew 190 (311)
T KOG1446|consen 124 VRLWDLRVKKC--------QG--LL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA-EW 190 (311)
T ss_pred EEeeEecCCCC--------ce--EE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc-ce
Confidence 99999997654 21 11 11222346676 567777777779999998 45566665433 33 48
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 352 WRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
..+.|+|||++|+.+...+.+.+.|. ++..+.++.++... ...--..+|+||
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~---------------------------~~~~~~a~ftPd 243 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA---------------------------GNLPLSATFTPD 243 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC---------------------------CCcceeEEECCC
Confidence 89999999999999999999999997 55544444433311 011246679999
Q ss_pred CeEEEEe-cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 431 DTLYIAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 431 ~~ll~~t-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
+++++++ .+|+|+.|++... .-.....+....++.++.+.|. .....+.+..+.+|-.+
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~~~~~~~~~~fnP~----------~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETG---KKVAVLRGPNGGPVSCVRFNPR----------YAMFVSASSNLVFWLPD 303 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCC---cEeeEecCCCCCCccccccCCc----------eeeeeecCceEEEEecc
Confidence 9877766 4599997776333 3223345555677777776543 34444556788888554
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=187.71 Aligned_cols=280 Identities=13% Similarity=0.183 Sum_probs=214.7
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
..|.++...| ....++||+.|..+.++|....+.+..++++...+. ++.+ .++...+++++.|-.|+||...
T Consensus 220 pgi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~-~v~~---~~~~~~v~~aSad~~i~vws~~- 291 (506)
T KOG0289|consen 220 PGITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKIT-SVKF---HKDLDTVITASADEIIRVWSVP- 291 (506)
T ss_pred CCeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEE-EEEe---ccchhheeecCCcceEEeeccc-
Confidence 4688888888 667899999999999999999999999998877544 4444 5778899999999999999987
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
..........|+.+|+.+..+|.|.||++++.|++..+.|++++.+
T Consensus 292 --------------------------------~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-- 337 (506)
T KOG0289|consen 292 --------------------------------LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-- 337 (506)
T ss_pred --------------------------------cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--
Confidence 3334455678999999999999999999999999999999999754
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
+.........-.+++.+|+ +.+|.+|..||.+++||+ ++..+..|.+|.+ +|..+.|+.+|-+|+++..|
T Consensus 338 ------lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 338 ------LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADD 410 (506)
T ss_pred ------EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecC
Confidence 2101111233458999999 567889999999999999 7778889999999 79999999999999999999
Q ss_pred CCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe-cCCeEEEEEe
Q 001391 370 SAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKL 447 (1088)
Q Consensus 370 g~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t-~~g~i~~~~~ 447 (1088)
+.|++||++. ...+++. .++ ...+.++.|.+.|.+++.. ++=++| +
T Consensus 411 ~~V~lwDLRKl~n~kt~~------------------l~~-----------~~~v~s~~fD~SGt~L~~~g~~l~Vy---~ 458 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQ------------------LDE-----------KKEVNSLSFDQSGTYLGIAGSDLQVY---I 458 (506)
T ss_pred CeEEEEEehhhcccceee------------------ccc-----------cccceeEEEcCCCCeEEeecceeEEE---E
Confidence 9999999964 2122111 111 1258899999988777765 233344 4
Q ss_pred ccCCcceeEEeeeecCCc-ceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEE
Q 001391 448 CDMDSVNWNKILQVSEGM-PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1088)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~-~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~ 501 (1088)
....+..|..+...+... ...++.+- ....++++++.|..++++.+
T Consensus 459 ~~k~~k~W~~~~~~~~~sg~st~v~Fg--------~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 459 CKKKTKSWTEIKELADHSGLSTGVRFG--------EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred Eecccccceeeehhhhcccccceeeec--------ccceEEeeccchhheEEeec
Confidence 455566787776555322 34444442 23478999999998888754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=193.59 Aligned_cols=259 Identities=17% Similarity=0.261 Sum_probs=194.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--e--------eEEEEeeeCCcceEEEEecccccccCCCc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--T--------LIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~--------~~~~~~~~~~~~V~~i~~s~~~~~~~~d~ 84 (1088)
|.|.|.-+.+- |. ...++|+++ ++.|.|||..+- . .-.++.+|++ .-.++.|++. ..|
T Consensus 123 h~gEVnRaRym--PQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~-----~~g 191 (422)
T KOG0264|consen 123 HDGEVNRARYM--PQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQ-----QEG 191 (422)
T ss_pred CCccchhhhhC--CC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccc-----cce
Confidence 67888888887 76 235556555 599999998642 1 1126777776 3588999854 444
Q ss_pred cceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEc
Q 001391 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1088)
Q Consensus 85 ~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~ 164 (1088)
.+|.++.|++|++||+........ .......+.+|.+.|.+++|+|. +..++++++.|+.+.|||+
T Consensus 192 ----~Lls~~~d~~i~lwdi~~~~~~~~--------~~~p~~~~~~h~~~VeDV~~h~~--h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 192 ----TLLSGSDDHTICLWDINAESKEDK--------VVDPKTIFSGHEDVVEDVAWHPL--HEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ----eEeeccCCCcEEEEeccccccCCc--------cccceEEeecCCcceehhhcccc--chhhheeecCCCeEEEEEc
Confidence 556666699999999986442111 24566778899999999999993 5568999999999999999
Q ss_pred CC--CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 165 SN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 165 ~~--~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
++ .+.......+. ..+.+++|-++ ++..||+|+.|++|.+||++
T Consensus 258 R~~~~~~~~~~~ah~-~~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlR------------------------------- 303 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHS-AEVNCVAFNPF--NEFILATGSADKTVALWDLR------------------------------- 303 (422)
T ss_pred CCCCCCCcccccccC-CceeEEEeCCC--CCceEEeccCCCcEEEeech-------------------------------
Confidence 95 33333333333 34677777443 47899999999999999998
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccC------CCCceeeeceeeeccCcceEEEE
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKD------SDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~------~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
.-..+++.+.+|++.|++|.|+|.. ..|+|++.|+.+.+||+..-.... ..+.+.+ +.-.||...|..+.
T Consensus 304 -nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll--F~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 304 -NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL--FIHGGHTAKVSDFS 380 (422)
T ss_pred -hcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee--EEecCccccccccc
Confidence 1345889999999999999999976 568899999999999997643211 0112222 46779999999999
Q ss_pred EC---CCEEEEEeCCCcEEEEcCC
Q 001391 316 LT---DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 316 ~~---~~~l~sg~~Dg~i~vWd~~ 336 (1088)
|+ +-.|+|.++|+.+.||...
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeecc
Confidence 98 5689999999999999974
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=193.11 Aligned_cols=279 Identities=13% Similarity=0.224 Sum_probs=220.1
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC---eeEEEEeee-CCcceEEEEecccccccCCCccceeeE
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg---~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
.|-.-|.++++| .. .+.+.+|.-|-|+|||+... ..+..+... .++-|..+..+ ||| +.
T Consensus 417 ~HGEvVcAvtIS--~~----trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-------pdg----rt 479 (705)
T KOG0639|consen 417 AHGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-------PDG----RT 479 (705)
T ss_pred ccCcEEEEEEec--CC----cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec-------CCC----ce
Confidence 365568899999 55 79999999999999998643 234444432 45568888888 888 66
Q ss_pred EEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 91 la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
|+++| ..++.|||+..+. ...-..+....-..++++.+| |.+..+++..||.|.|||+.+...
T Consensus 480 LivGGeastlsiWDLAapT-------------prikaeltssapaCyALa~sp---DakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred EEeccccceeeeeeccCCC-------------cchhhhcCCcchhhhhhhcCC---ccceeeeeccCCcEEEEEccccee
Confidence 66666 6899999998654 222223333335678899999 999999999999999999999999
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
+..++++... +.++.+ +++|..|-+|+-|++|+.||++ +++.+
T Consensus 544 VrqfqGhtDG-ascIdi---s~dGtklWTGGlDntvRcWDlr---------------------------------egrql 586 (705)
T KOG0639|consen 544 VRQFQGHTDG-ASCIDI---SKDGTKLWTGGLDNTVRCWDLR---------------------------------EGRQL 586 (705)
T ss_pred eecccCCCCC-ceeEEe---cCCCceeecCCCccceeehhhh---------------------------------hhhhh
Confidence 9999987653 223333 6789999999999999999998 33333
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
+.. .....|+++.++|++.+++.|-..+.+.+-....... +.+..|..-|.++.|. +..+++.+.|
T Consensus 587 qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----------yqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 587 QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred hhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-----------eeecccccEEEEEEecccCceeeecCch
Confidence 221 2347899999999999999999999998877766432 4677899999999998 8999999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
..+..|.. -|..+...+... +|.++.++.|.++|+||+.|....+|.+
T Consensus 655 nlLnawrtPyGasiFqskE~S--sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 655 NLLNAWRTPYGASIFQSKESS--SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhhhccCccccceeeccccC--cceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999998 676666665544 6999999999999999999998888865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=188.92 Aligned_cols=274 Identities=15% Similarity=0.194 Sum_probs=204.3
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCcccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNL 122 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~ 122 (1088)
..+.+||+.||..+.++++.....-+++..-- +. .++++ .+...+.+|.+....
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~------~~-----yllsaq~~rp~l~vw~i~k~~-------------- 72 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALN------NE-----YLLSAQLKRPLLHVWEILKKD-------------- 72 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhc------hh-----heeeecccCccccccccCchh--------------
Confidence 67999999999999888874222233333320 21 33333 446789999988532
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
.+....--.+.|.+++-+| +|.+|+.|+..+.|++|.+.+|..+..+..|-. .+..+.| +.|+.+|++|+.|
T Consensus 73 -~~~q~~v~Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~f---s~dgs~iiTgskD 144 (476)
T KOG0646|consen 73 -QVVQYIVLPGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKF---SDDGSHIITGSKD 144 (476)
T ss_pred -hhhhhcccccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEE---eCCCcEEEecCCC
Confidence 1112233457899999999 999999888999999999999998877755433 3445555 6789999999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC--CEEEEEECCCcE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG--SKLVSVSDDRSA 280 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g--~~l~s~s~Dg~v 280 (1088)
|.|.+|.+.+ ..+++ .....++++.+..|+-+|+.+...+.| .+++|+|.|+++
T Consensus 145 g~V~vW~l~~-----------lv~a~-------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 145 GAVLVWLLTD-----------LVSAD-------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ccEEEEEEEe-----------ecccc-------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 9999999861 00111 011467889999999999999887654 689999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC---C--------------CceeE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---D--------------GKQLK 341 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~---~--------------~~~~~ 341 (1088)
++||+..+.. + ....-+..+.+++.+ +..++.|+++|.|.+.++ . +..+.
T Consensus 201 k~wdlS~g~L--------L---lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 201 KLWDLSLGVL--------L---LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EEEEecccee--------e---EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 9999999643 2 222234678888888 689999999999998887 2 12455
Q ss_pred EEcccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcc
Q 001391 342 MIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSL 385 (1088)
Q Consensus 342 ~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~ 385 (1088)
.+.+|.+ .+|++++++-||.+|++|+.||.|+|||+.. ++++++
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 6778877 5799999999999999999999999999944 444443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-17 Score=186.67 Aligned_cols=477 Identities=14% Similarity=0.113 Sum_probs=293.8
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
+|+ ..+.+.-+..|.||...+ ..++..+.+|...+..+.+.|....-.++.+++.||.|++
T Consensus 26 nD~----k~l~~~~~~~V~VyS~~T---------------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 26 NDA----KFLFLCTGNFVKVYSTAT---------------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred cCC----cEEEEeeCCEEEEEecch---------------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 777 667777778999999886 4577799999999999999994333357889999999999
Q ss_pred EEcCCCceEEEeccCCc--eeEEEEeeecCCCCCcEEEEEecCCeEE-EEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 162 WDISNSSIILEVHSPER--CLLYSMKLWGDNLEALRIASGTIYNEII-VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~--~~~~s~~~~~~s~~~~~l~sg~~dg~I~-vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
||...+..+.++..... ...+..++... ...+..+..+-.+. -.... ...+ ...+.
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~---s~~~~~s~~~~~~~~~~s~~---~~~q---------------~~~~~ 145 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADI---SANVYVSVEDYSILTTFSKK---LSKQ---------------SSRFV 145 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCc---cceeEeecccceeeeecccc---cccc---------------eeeeE
Confidence 99999999887764332 22332222111 11111221111111 11110 0000 00000
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~- 317 (1088)
+-.. .......+.+|.. -..|.+++.|.+....-. ..+.+|+...+.. ..... -....|...+++.+++
T Consensus 146 ~~t~--~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~-----~~~~~-~~~~~Htf~~t~~~~sp 215 (792)
T KOG1963|consen 146 LATF--DSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTK-----HTSSR-DITVHHTFNITCVALSP 215 (792)
T ss_pred eeec--cccchhhhhhhcC-CccEEEcCCceEEEEEEe-eeEEEEEecccce-----eeccc-hhhhhhcccceeEEecc
Confidence 0000 0111111223322 456778888877666544 4688898877431 11111 1334577778899988
Q ss_pred -CCEEEEEeCCCcEEEEcCCC-----ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccc
Q 001391 318 -DSFIITAGEDCTCRVWGSDG-----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEA 391 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~~~-----~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~ 391 (1088)
+.++++|..||.|.+|.--+ .....+.-|.. .|.+++|+++|.+|++||..|.+.+|.+.+.. +.+
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf------ 287 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF------ 287 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-ccc------
Confidence 68999999999999998632 33466788888 69999999999999999999999999996532 111
Q ss_pred cccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEE-EEecCCeEEEEEeccCCcceeEEeeeecC-------
Q 001391 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKLCDMDSVNWNKILQVSE------- 463 (1088)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll-~~t~~g~i~~~~~~~~~~~~~~~~~~~~~------- 463 (1088)
+..-+.+|..+.++||+.++ +...|..|+.++..+..... ..++-.
T Consensus 288 -----------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~---tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 288 -----------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS---TISGIKPPTPSTK 341 (792)
T ss_pred -----------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh---hccCccCCCcccc
Confidence 11123579999999998554 45678888877665432211 001100
Q ss_pred ---CcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeecccc--ceeeeEEEeecCCCeEE
Q 001391 464 ---GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIE--RQLLGTYWCKSLGHRFI 538 (1088)
Q Consensus 464 ---~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~L 538 (1088)
..-...+.+.+ ..+.++..+..|.|++||+.+.....+......-..... ..+...-.+.+..|.++
T Consensus 342 ~~~~~l~t~~~idp--------r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDP--------RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred ccccccceeEEEcC--------CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 11112222322 346788899999999999988766554443322222222 12222222344568888
Q ss_pred EEEC--------CCC--eEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeC--CCEEEEEcCCCcEEE
Q 001391 539 FTAD--------PKG--RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE--DEVLFCGDLRGNLVL 606 (1088)
Q Consensus 539 ~s~~--------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spd--g~~LatGs~dg~I~I 606 (1088)
+|.. .|| .++.|...... + ...+......+|...+.+..+.+. ....++++.||.++|
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~--k--------t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki 483 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNS--K--------TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI 483 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCc--c--------eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence 8764 222 56788766432 1 233444445688887777776643 337899999999999
Q ss_pred EeCCcccccccccccccccCcceeecccc--cccceeEEEEEeccCCceEEEEecCCCeEEEEEeec
Q 001391 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAH--GISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 607 w~~~~~~~~~~~~~~~~~l~~~~~~~g~h--g~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
|-+..... ..+......++..+ .+..+++.+|+ .| ..+++.|.|++|.+||.+.
T Consensus 484 W~~~~~~n-------~~k~~s~W~c~~i~sy~k~~i~a~~fs---~d-Gslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 484 WVFTDDSN-------IYKKSSNWTCKAIGSYHKTPITALCFS---QD-GSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecccc-------cCcCccceEEeeeeccccCcccchhhc---CC-CcEEEEecCCEEEEecCCC
Confidence 99865321 11233333443322 13678888888 45 4788999999999999877
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=188.53 Aligned_cols=238 Identities=17% Similarity=0.267 Sum_probs=193.3
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC--CCCcEEEEEEe
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFL 141 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~I~~v~f~ 141 (1088)
|+.-|..+.+| ... +.+.++|.+.|+|||+..... ...+..|.. -...|.++.++
T Consensus 418 HGEvVcAvtIS-------~~t----rhVyTgGkgcVKVWdis~pg~------------k~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTIS-------NPT----RHVYTGGKGCVKVWDISQPGN------------KSPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEec-------CCc----ceeEecCCCeEEEeeccCCCC------------CCccccccccCcccceeeeEec
Confidence 45457888888 443 788889999999999985431 223333332 34679999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
| ||+.|++|+.-.++.|||+.........+.. ....+|.++. ++|.++.+++..||.|.|||+.
T Consensus 475 p---dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~---spDakvcFsccsdGnI~vwDLh--------- 539 (705)
T KOG0639|consen 475 P---DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---SPDAKVCFSCCSDGNIAVWDLH--------- 539 (705)
T ss_pred C---CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc---CCccceeeeeccCCcEEEEEcc---------
Confidence 9 9999999999999999999866543332211 1223455554 7899999999999999999999
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
....++.|+||.+.+.||..++||..|-||+-|.+||.||+++++.
T Consensus 540 ------------------------nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq---------- 585 (705)
T KOG0639|consen 540 ------------------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ---------- 585 (705)
T ss_pred ------------------------cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh----------
Confidence 7788999999999999999999999999999999999999998743
Q ss_pred ceeeecc--CcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 301 SSVLYGH--NARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 301 ~~~~~~h--~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+..| ...|.++.+. +..++.|-+++.+-|-..++.....+..|.. .|.++.|.+-|+++++.|.|+-+..|.
T Consensus 586 ---lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 586 ---LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred ---hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccccc-EEEEEEecccCceeeecCchhhhhhcc
Confidence 2223 3567777776 6899999999999998888888888888888 799999999999999999999999997
Q ss_pred c
Q 001391 377 F 377 (1088)
Q Consensus 377 ~ 377 (1088)
.
T Consensus 662 t 662 (705)
T KOG0639|consen 662 T 662 (705)
T ss_pred C
Confidence 6
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=188.89 Aligned_cols=256 Identities=17% Similarity=0.225 Sum_probs=194.6
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEeccc
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~ 76 (1088)
-+.+|.+.+.. ..|+|.|++-+ |+ |.||++|+ .+.|++|.+.+|.++..+..|-. .|.++.|+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~--n~----G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs-- 132 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASS--NL----GYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKFS-- 132 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecC--CC----ceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEEe--
Confidence 36788877665 46889999999 98 89999996 79999999999999999977544 79999999
Q ss_pred ccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc
Q 001391 77 NCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1088)
Q Consensus 77 ~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~ 155 (1088)
.|| ..+.++ .|+.|.+|.+..-- +++.....++++.+..|.-.|+++...+. +...+|+|+|.
T Consensus 133 -----~dg----s~iiTgskDg~V~vW~l~~lv------~a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~ 196 (476)
T KOG0646|consen 133 -----DDG----SHIITGSKDGAVLVWLLTDLV------SADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASE 196 (476)
T ss_pred -----CCC----cEEEecCCCccEEEEEEEeec------ccccCCCccceeeeccCcceeEEEEecCC-CccceEEEecC
Confidence 777 455554 49999999987421 11111136788999999999999999871 13358999999
Q ss_pred CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 156 Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
|.++++||+..+..+.++..+.. +.++++ +|.+..++.|+.+|.|.+.++....... .
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~s--i~av~l---Dpae~~~yiGt~~G~I~~~~~~~~~~~~-----------------~ 254 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSS--IKAVAL---DPAERVVYIGTEEGKIFQNLLFKLSGQS-----------------A 254 (476)
T ss_pred CceEEEEEeccceeeEEEecCCc--ceeEEE---cccccEEEecCCcceEEeeehhcCCccc-----------------c
Confidence 99999999999999888766543 334444 6889999999999999998876211000 0
Q ss_pred eeEecccccceeeeEEEeCCCC--CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE
Q 001391 236 CFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh~~--~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~ 313 (1088)
.+..-.....+..+..+.||++ .|+|++.+-||..|++|+.||.|++||+.+.+ +++ ++..-.++|+.
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q--------~iR--tl~~~kgpVtn 324 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ--------CIR--TLQTSKGPVTN 324 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH--------HHH--HHhhhccccce
Confidence 0000011124567778899999 99999999999999999999999999999864 443 33334567777
Q ss_pred EEEC
Q 001391 314 CCLT 317 (1088)
Q Consensus 314 v~~~ 317 (1088)
+.+.
T Consensus 325 L~i~ 328 (476)
T KOG0646|consen 325 LQIN 328 (476)
T ss_pred eEee
Confidence 7774
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=192.15 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=199.4
Q ss_pred EEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEE
Q 001391 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI 262 (1088)
Q Consensus 183 s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v 262 (1088)
+..|.........||.+.+||.|.++|...-. .....+.+.....|.+.|+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~---------------------------fr~ee~~lk~~~aH~nAifDl 106 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIV---------------------------FRLEERQLKKPLAHKNAIFDL 106 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhh---------------------------cchhhhhhcccccccceeEee
Confidence 34443334556789999999999999987100 001233456667899999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC--CC
Q 001391 263 EWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DG 337 (1088)
Q Consensus 263 ~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~--~~ 337 (1088)
.|.|....|++++.|.++++||+...+ .++.....||...|.++||. +..|++|+.||.+.|||+ ++
T Consensus 107 ~wapge~~lVsasGDsT~r~Wdvk~s~--------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 107 KWAPGESLLVSASGDSTIRPWDVKTSR--------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ccCCCceeEEEccCCceeeeeeeccce--------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 999977889999999999999999853 44423588999999999998 579999999999999998 22
Q ss_pred c--------------------------eeEEEcccCCCCeEE---EEEcCCCCEEEEEeC-CCCEEEEEcCCCCCCcccC
Q 001391 338 K--------------------------QLKMIKEHIGRGIWR---CLYDSLSSLLVTAGF-DSAIKVHQFQAFLPGSLES 387 (1088)
Q Consensus 338 ~--------------------------~~~~~~~h~~~~V~~---l~~~~dg~~l~tg~~-Dg~I~iwd~~~~~~~~~~~ 387 (1088)
. .+..-..+.. .|.+ +.+..|...||++|. |+.|++||++...-..-.
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~- 256 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ- 256 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc-
Confidence 0 0111222333 4655 556678888999888 999999999642110000
Q ss_pred CccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcce
Q 001391 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPI 467 (1088)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i 467 (1088)
++.....+. .. +. ....+
T Consensus 257 --------------------------------ep~~~~~~~------t~-sk-----------------------rs~G~ 274 (720)
T KOG0321|consen 257 --------------------------------EPRGSDKYP------TH-SK-----------------------RSVGQ 274 (720)
T ss_pred --------------------------------CCCcccCcc------Cc-cc-----------------------ceeee
Confidence 000000000 00 00 00011
Q ss_pred EEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeE
Q 001391 468 ICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1088)
Q Consensus 468 ~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i 547 (1088)
.++..+.. +.++...+.|+.|++|++......+...+.. +.....-.-.+.++++.+|++|+.|+..
T Consensus 275 ~nL~lDss--------Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg-----~~~~sf~vks~lSpd~~~l~SgSsd~~a 341 (720)
T KOG0321|consen 275 VNLILDSS--------GTYLFASCTDNSIYFYNMRSLSISPVAEFSG-----KLNSSFYVKSELSPDDCSLLSGSSDEQA 341 (720)
T ss_pred EEEEecCC--------CCeEEEEecCCcEEEEeccccCcCchhhccC-----cccceeeeeeecCCCCceEeccCCCcce
Confidence 22222222 2344444448899999887765544332211 1111111123578999999999999999
Q ss_pred EEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeee--CCCEEEEEcCCCcEEEEeCCcccc
Q 001391 548 KLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF--EDEVLFCGDLRGNLVLFPLLRDLL 614 (1088)
Q Consensus 548 ~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~sp--dg~~LatGs~dg~I~Iw~~~~~~~ 614 (1088)
++|.+..... +.....+|.-.|++++|.| ....+ +.++|..++||++.++..
T Consensus 342 yiw~vs~~e~--------------~~~~l~Ght~eVt~V~w~pS~~t~v~-TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 342 YIWVVSSPEA--------------PPALLLGHTREVTTVRWLPSATTPVA-TCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred eeeeecCccC--------------ChhhhhCcceEEEEEeeccccCCCce-eeccCcceEEEeccCchh
Confidence 9999986532 2222458999999999986 35555 559999999999977543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=170.98 Aligned_cols=237 Identities=19% Similarity=0.258 Sum_probs=180.0
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC--CCC
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CGS 269 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp--~g~ 269 (1088)
-|.+||+++.|++|+|+..+.+. ....+.++.||.++|..++|.. -|.
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~------------------------------~s~ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNG------------------------------QSKLLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCC------------------------------CceeeeEecCCCCCeeEEeecccccCc
Confidence 47899999999999999998110 2367889999999999999964 789
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcCCCc----eeE
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGSDGK----QLK 341 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~~~~----~~~ 341 (1088)
+|++++.||.|.||.-.+++. +.. .....|...|.+++|. +-.|++++.||.|.|.+.+.. ..+
T Consensus 72 iLAScsYDgkVIiWke~~g~w------~k~--~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRW------TKA--YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred EeeEeecCceEEEEecCCCch------hhh--hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 999999999999999988754 222 3677899999999997 568999999999999998322 223
Q ss_pred EEcccCCCCeEEEEEcCC---C-----------CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCC
Q 001391 342 MIKEHIGRGIWRCLYDSL---S-----------SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 342 ~~~~h~~~~V~~l~~~~d---g-----------~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
....|.- +|+++++.|. | +.|++||.|..|+||+.+...
T Consensus 144 i~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------------------------- 196 (299)
T KOG1332|consen 144 IVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------------------------- 196 (299)
T ss_pred hhhcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--------------------------
Confidence 4567877 7999999885 4 469999999999999985410
Q ss_pred CccceeeccCCCCceEEEEeccCC-----eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCC
Q 001391 408 FSEQIRLTDSKSEYVRCLHLTSED-----TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1088)
Q Consensus 408 ~~~~~~~~~~~~~~V~~l~~s~~~-----~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1088)
-.....+.+|.+.||.+++.|.- .+..++.+|.++.|... .....|...+...-...++.+.++..
T Consensus 197 -w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~s------- 267 (299)
T KOG1332|consen 197 -WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLS------- 267 (299)
T ss_pred -hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccCcccccccccCCcceEEEEEecc-------
Confidence 01112255677899999999843 45566788988876554 33345654443333455666666444
Q ss_pred CCCeEEEecCCCCEEEEEEcC
Q 001391 483 IDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~~~~ 503 (1088)
+++|++++.|+.+.+|.-+.
T Consensus 268 -Gn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 268 -GNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred -ccEEEEecCCcEEEEEEeCC
Confidence 48999999999999997653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=198.39 Aligned_cols=286 Identities=15% Similarity=0.192 Sum_probs=213.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC----eeEEEEeeeC--CcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFH--GIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg----~~~~~~~~~~--~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
++..+|... ++ ...|+.++...++||.+... ++...+.... -..+..+.|.. -+ +.+|
T Consensus 40 ~~~nAIs~n--r~----~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~------~~----~NlI 103 (839)
T KOG0269|consen 40 AKANAISVN--RD----INQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ------LY----SNLI 103 (839)
T ss_pred cccceEeec--CC----cceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhccccc------ch----hhhh
Confidence 456677777 77 66777777788999987543 2322322111 11344556652 12 2566
Q ss_pred EEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 92 a~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
|++. .|.|.+||+.... +.+++..+..|...|+++.|++ ....+|++|+.||+|++||++..+-.
T Consensus 104 AT~s~nG~i~vWdlnk~~------------rnk~l~~f~EH~Rs~~~ldfh~--tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSI------------RNKLLTVFNEHERSANKLDFHS--TEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred eeecCCCcEEEEecCccc------------cchhhhHhhhhccceeeeeecc--CCccEEEecCCCceEEEEeeeccccc
Confidence 6655 8999999998532 3577888999999999999998 25579999999999999999988777
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.++.+...+ +..+.|.+ ..+..++++...|.+++||++ ...++..
T Consensus 170 ~t~~~nSES-iRDV~fsp--~~~~~F~s~~dsG~lqlWDlR--------------------------------qp~r~~~ 214 (839)
T KOG0269|consen 170 STFRSNSES-IRDVKFSP--GYGNKFASIHDSGYLQLWDLR--------------------------------QPDRCEK 214 (839)
T ss_pred ccccccchh-hhceeecc--CCCceEEEecCCceEEEeecc--------------------------------CchhHHH
Confidence 666653322 33344432 347899999999999999998 1456777
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC---CEEEEEe--
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAG-- 325 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~---~~l~sg~-- 325 (1088)
.+..|.+.|.++.|+|++.+|||||.|+.|+|||+.+.+. ... .......++.++.|.| .+|++++
T Consensus 215 k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~------~~~---~tInTiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 215 KLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA------KPK---HTINTIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred HhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc------cce---eEEeecceeeeeeeccCccchhhhhhcc
Confidence 8899999999999999999999999999999999997543 111 2233456889999983 5788776
Q ss_pred CCCcEEEEcCC--CceeEEEcccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGSD--GKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~~--~~~~~~~~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|-.|+|||+. --+..++..|.. .++.++|.. |...|.+++.||+|..+..+
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccceEEEEeeccccccceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhh
Confidence 57789999994 346688999998 688999954 55688999999998877663
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-18 Score=170.11 Aligned_cols=300 Identities=17% Similarity=0.248 Sum_probs=214.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe------eEE----EEee----eCCcceEEEEeccccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT------LIR----PFQV----FHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~------~~~----~~~~----~~~~~V~~i~~s~~~~~~ 80 (1088)
|.|.|.++.+. +. .++|+++|. ||.|.|||++... ++. .+.. .|...|..+.|-|.
T Consensus 42 HgGsvNsL~id--~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~---- 112 (397)
T KOG4283|consen 42 HGGSVNSLQID--LT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI---- 112 (397)
T ss_pred CCCccceeeec--cc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----
Confidence 77899999998 65 589999988 8999999997532 111 1111 12346788888763
Q ss_pred CCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
.. ..+.+++ |.+++|||.++.. ..-.+ ...+.|++-+++|....-.++|+|..|-.|
T Consensus 113 -Dt-----GmFtssSFDhtlKVWDtnTlQ---------------~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 113 -DT-----GMFTSSSFDHTLKVWDTNTLQ---------------EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred -cC-----ceeecccccceEEEeecccce---------------eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcE
Confidence 23 4555555 9999999998632 22222 244778999999976666789999999999
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
++.|+.+|.....+.+|... +.++.+. ....-.|++|+.||.|++||++.. .++++.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~-vlaV~Ws--p~~e~vLatgsaDg~irlWDiRra--------------------sgcf~~ 227 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDG-VLAVEWS--PSSEWVLATGSADGAIRLWDIRRA--------------------SGCFRV 227 (397)
T ss_pred EEEeccCCcceeeeccccCc-eEEEEec--cCceeEEEecCCCceEEEEEeecc--------------------cceeEE
Confidence 99999999999999888664 4455552 234557889999999999999811 123333
Q ss_pred cccccc--eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce---EEE
Q 001391 240 QDQQHT--AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV---WDC 314 (1088)
Q Consensus 240 ~~~~~~--~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I---~~v 314 (1088)
.+...+ ...+..-..|.+.|++++|..++.++++++.|..+++|+..+++.. ..+.. ..-|+..+ ..+
T Consensus 228 lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt----l~~~g---~~~~n~~~~~~~~~ 300 (397)
T KOG4283|consen 228 LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT----LREFG---PIIHNQTTSFAVHI 300 (397)
T ss_pred eecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc----ccccc---cccccccccceEEE
Confidence 332211 1222334579999999999999999999999999999999987642 11111 11121111 001
Q ss_pred E-ECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 315 C-LTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 315 ~-~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
. .....++.--.++++.++.+ +|..+..+..|- +.|.+.++-|+=+...+|..|+.|..|..
T Consensus 301 ~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~-k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 301 QSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL-KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecccceEEEEecCCeEEEEEccCceEEEeeeccc-ceeeEEeecCchhhhhccccCCccccccc
Confidence 1 11344555556799999999 999999999994 47999999999889999999999999987
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=167.60 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=206.1
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEec
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p 142 (1088)
|+..|..+++.+ ..| ++++++| |+.|.|||++.........---.....-...+..+|.-.|.++.|-|
T Consensus 42 HgGsvNsL~id~------teg----rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 42 HGGSVNSLQIDL------TEG----RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred CCCccceeeecc------ccc----eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee
Confidence 445788888874 455 5666655 99999999985431111100000001112234467888999999999
Q ss_pred ccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCC
Q 001391 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 143 ~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
. |...+.+++-|.++++||..+.+....+.-+. .+|+-++.+-.....+||+|+.+-.|++.|+.
T Consensus 112 ~--DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----------- 176 (397)
T KOG4283|consen 112 I--DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----------- 176 (397)
T ss_pred e--cCceeecccccceEEEeecccceeeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEecc-----------
Confidence 4 55678889999999999999988877766544 35554443333446689999999999999999
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
.+...+.+.||.+.|.+|.|+|...+ |+||+.||.||+||++... .++.
T Consensus 177 ----------------------SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-------gcf~- 226 (397)
T KOG4283|consen 177 ----------------------SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-------GCFR- 226 (397)
T ss_pred ----------------------CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc-------ceeE-
Confidence 88889999999999999999998886 5889999999999998731 1221
Q ss_pred eeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC-
Q 001391 302 SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF- 380 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~- 380 (1088)
.+..|+. . ....++.-..|.+ .|.+++|..++.++++++.|..+++|+....
T Consensus 227 -~lD~hn~--------------------k-----~~p~~~~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 227 -VLDQHNT--------------------K-----RPPILKTNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -EeecccC--------------------c-----cCccccccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence 2333321 0 0111223446888 4999999999999999999999999998431
Q ss_pred -CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEee
Q 001391 381 -LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (1088)
Q Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~ 459 (1088)
.++.+- ++. .+...... -.+++.+ .+.++..-+++.+..+++..... .+.+
T Consensus 280 ntl~~~g------------~~~----~n~~~~~~------~~~~~~~---s~vfv~~p~~~~lall~~~sgs~---ir~l 331 (397)
T KOG4283|consen 280 NTLREFG------------PII----HNQTTSFA------VHIQSMD---SDVFVLFPNDGSLALLNLLEGSF---VRRL 331 (397)
T ss_pred ccccccc------------ccc----ccccccce------EEEeecc---cceEEEEecCCeEEEEEccCceE---EEee
Confidence 111110 000 00000000 0012111 12344444556666555544332 3344
Q ss_pred eecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEE
Q 001391 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1088)
Q Consensus 460 ~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~ 501 (1088)
.+| ...+.|....++ -+.+.+|+.|++|..|..
T Consensus 332 ~~h-~k~i~c~~~~~~--------fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STH-LKRINCAAYRPD--------FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecc-cceeeEEeecCc--------hhhhhccccCCccccccc
Confidence 555 555666554333 367889999999999976
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=182.75 Aligned_cols=261 Identities=16% Similarity=0.233 Sum_probs=189.4
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce----------EEEeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----------ILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~----------~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
.|.+.|+.++..| .+...+|+++..+.|.|||.....- -.++.+|... .|++.+ .....-.+++|
T Consensus 122 ~h~gEVnRaRymP--Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-g~glsW--n~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMP--QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-GYGLSW--NRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCC--CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc-cccccc--ccccceeEeec
Confidence 5889999999999 3556889899999999999864321 1244455442 344433 23345689999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-CCEEEEEECCC
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDR 278 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-g~~l~s~s~Dg 278 (1088)
+.|++|.+||+......+ ....+...+.+|+..|..++|++- ...++++++|+
T Consensus 197 ~~d~~i~lwdi~~~~~~~--------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKED--------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred cCCCcEEEEeccccccCC--------------------------ccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 999999999998211100 023456778999999999999985 46789999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~ 353 (1088)
.+.|||+++. . .+... ...+|.+.|+|++|+ +..|+||+.|++|++||+ -.+++.++.+|.. .|..
T Consensus 251 ~L~iwD~R~~-~-----~~~~~--~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~ 321 (422)
T KOG0264|consen 251 KLMIWDTRSN-T-----SKPSH--SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQ 321 (422)
T ss_pred eEEEEEcCCC-C-----CCCcc--cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEE
Confidence 9999999963 1 12222 778999999999998 579999999999999999 3568899999998 6999
Q ss_pred EEEcCCC-CEEEEEeCCCCEEEEEcCCC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC
Q 001391 354 CLYDSLS-SLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1088)
Q Consensus 354 l~~~~dg-~~l~tg~~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 431 (1088)
+.|+|.. ..|+++|.|+.+.+||+..- ..+..+... ....+.+..-.+|...|..+.|+|..
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~----------------dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE----------------DGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhc----------------cCCcceeEEecCcccccccccCCCCC
Confidence 9999975 58999999999999999531 111100000 11112233345777889999999977
Q ss_pred eE--EEEecCCeEEEEE
Q 001391 432 TL--YIATNHGYLYHTK 446 (1088)
Q Consensus 432 ~l--l~~t~~g~i~~~~ 446 (1088)
-. ...+.++.+..|+
T Consensus 386 PW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQ 402 (422)
T ss_pred CeEEEEecCCceEEEee
Confidence 33 3345666666443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-18 Score=170.21 Aligned_cols=305 Identities=19% Similarity=0.201 Sum_probs=194.6
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE------EEeccCCceeEEEEeeecCCCCCcE-E
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII------LEVHSPERCLLYSMKLWGDNLEALR-I 196 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~------~~~~~~~~~~~~s~~~~~~s~~~~~-l 196 (1088)
.+..|++|.+.|++++|+. ||++|||++.|++|++|++...+.. ..+... ....+.| .||..- +
T Consensus 78 ~~~~LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~F---apDc~s~v 148 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVF---APDCKSVV 148 (420)
T ss_pred hhhhhhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEE---CCCcceEE
Confidence 4567899999999999999 9999999999999999999764321 111111 1222333 455554 4
Q ss_pred EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 197 ~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
++.-...++++|.+.- +.+ |.. .-...-|+ ...--+.|.-.|..+-....+++|+|++.
T Consensus 149 v~~~~g~~l~vyk~~K-----~~d--------G~~--~~~~v~~D------~~~f~~kh~v~~i~iGiA~~~k~imsas~ 207 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVK-----KTD--------GSG--SHHFVHID------NLEFERKHQVDIINIGIAGNAKYIMSASL 207 (420)
T ss_pred EEEccCCEEEEEEeee-----ccc--------CCC--Cccccccc------ccccchhcccceEEEeecCCceEEEEecC
Confidence 4445567899998761 111 000 00000011 01112346677778888888999999999
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC----CC-----ceeEEEcc
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DG-----KQLKMIKE 345 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~----~~-----~~~~~~~~ 345 (1088)
|..|.+|++.. +. +. ........-..++.+ |.++++++..--++||.. +| ..+..+++
T Consensus 208 dt~i~lw~lkG-q~--------L~--~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 208 DTKICLWDLKG-QL--------LQ--SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred CCcEEEEecCC-ce--------ee--eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 99999999984 22 21 222222233445555 789999999999999997 33 24557899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE
Q 001391 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (1088)
Q Consensus 346 h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 425 (1088)
|.. +|..++|++++..++|.+.||++++||.+-..... .+..++.. +. ..+...++....+
T Consensus 277 H~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~-----------qDpk~Lk~------g~-~pl~aag~~p~RL 337 (420)
T KOG2096|consen 277 HQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG-----------QDPKILKE------GS-APLHAAGSEPVRL 337 (420)
T ss_pred chh-heeeeeeCCCcceeEEEecCCcEEEeeccceEecC-----------CCchHhhc------CC-cchhhcCCCceEE
Confidence 998 79999999999999999999999999984210000 00001000 00 0111112223378
Q ss_pred EeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 426 ~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
..+|+|..++.+....+..+.-.+ ++-...++.-++..|.++++.+. +.++++++ |..++++.
T Consensus 338 ~lsP~g~~lA~s~gs~l~~~~se~---g~~~~~~e~~h~~~Is~is~~~~--------g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 338 ELSPSGDSLAVSFGSDLKVFASED---GKDYPELEDIHSTTISSISYSSD--------GKYIATCG-DRYVRVIR 400 (420)
T ss_pred EeCCCCcEEEeecCCceEEEEccc---CccchhHHHhhcCceeeEEecCC--------CcEEeeec-ceeeeeec
Confidence 999999999888777776443333 22122333444677888888554 47777766 56777764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-17 Score=165.88 Aligned_cols=264 Identities=17% Similarity=0.228 Sum_probs=185.4
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----eeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..-|+++.|. +- |+.+|+|+ |++|+|||..+. .+....+.|.+ .|..|.|.+. .-| ..+
T Consensus 13 ~DlihdVs~D--~~----GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhP-----EfG----qvv 76 (361)
T KOG2445|consen 13 KDLIHDVSFD--FY----GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHP-----EFG----QVV 76 (361)
T ss_pred cceeeeeeec--cc----CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCc-----ccc----ceE
Confidence 3568999999 66 88888887 899999996433 56677788777 7999999742 234 566
Q ss_pred EEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-
Q 001391 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 92 a~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
|++. |++++||.=....... ...+.....++..-...|++|.|.| ..-|-.||+++.||.+|||+.-.-..
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~------~~~~Wv~~ttl~DsrssV~DV~FaP-~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEA------HGRRWVRRTTLVDSRSSVTDVKFAP-KHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred EEEecCCceeeeeeccccccc------ccceeEEEEEeecCCcceeEEEecc-hhcceEEEEeccCcEEEEEecCCcccc
Confidence 6654 9999999853211000 1123566778888889999999999 22455899999999999998754322
Q ss_pred -----EEEec----c--CCceeEEEEeeecCCCCCcEEEEEecC-----CeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 170 -----ILEVH----S--PERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 170 -----~~~~~----~--~~~~~~~s~~~~~~s~~~~~l~sg~~d-----g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
..+++ . ......+++.+.+......+||.|+.+ +.++||....+
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-------------------- 209 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-------------------- 209 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC--------------------
Confidence 22222 1 112223344443323345678888765 57888887610
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCC----CEEEEEECCCcEEEEEcCCCccc-------CC-----CCce
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWK-------DS-----DSIE 297 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g----~~l~s~s~Dg~v~iWd~~~~~~~-------~~-----~~~~ 297 (1088)
..+-..+..+.+|+.+|+.|+|.|+- ..|++++.|| |+||++...... .+ ...+
T Consensus 210 ---------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 210 ---------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred ---------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence 00234566778999999999999964 4689999999 999999853311 11 1123
Q ss_pred eeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
.+. .+.+|.+.||.+.|+ |..|.+.|.||.+|+|..
T Consensus 280 ~vs--~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 280 KVS--ELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred Eee--eccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 333 578899999999998 899999999999999997
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-15 Score=178.71 Aligned_cols=597 Identities=15% Similarity=0.075 Sum_probs=312.2
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC----CEEEEEEcC
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG----SIFRIEWSS 266 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~----~V~~v~~sp 266 (1088)
.+...++.++.++.+.+||... ...+..+..-+. ...-+.+++
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~---------------------------------~~~~~~i~~~er~~l~~~~~~g~s~ 143 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKN---------------------------------SSVLSKIQSDERCTLYSSLIIGDSA 143 (967)
T ss_pred hhcceEEEEEcCceEEEEeccc---------------------------------CceehhcCCCceEEEEeEEEEeccC
Confidence 4567888999999999999882 222222221111 112234566
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeE-E
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLK-M 342 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~-~ 342 (1088)
+.-++++|+.-+.|.+|+...... . ..+.||.+.|.++.++ +.++++.++|.++|+|++ +.+... .
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~-------p---~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~ 213 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNK-------P---IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT 213 (967)
T ss_pred cEEEEEeccccccEEEEeccccCC-------c---ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc
Confidence 777899999999999999884321 1 2588999999999996 899999999999999999 555444 5
Q ss_pred EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce
Q 001391 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (1088)
Q Consensus 343 ~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 422 (1088)
.-+|.. .||.+.|.|+ .++|++.|.+.++|+.+...+..+.+|. ...+
T Consensus 214 ~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~-----------------------------g~~i 261 (967)
T KOG0974|consen 214 GFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHS-----------------------------GKGI 261 (967)
T ss_pred cccccc-eeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhh-----------------------------hcce
Confidence 668998 5999999998 8999999999999988776555555544 1246
Q ss_pred EEEEeccCC-eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCC--C--------CCCcCCCCCeEEEec
Q 001391 423 RCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN--E--------PKYPCGIDDWVALGD 491 (1088)
Q Consensus 423 ~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~--------~~~s~~~~~~la~g~ 491 (1088)
..++..++. ..+.+.++|.+..+++... ...++. ....+++.... . .......+..+...+
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~r-------~~e~~~-~~~~~~~s~~kl~~~~f~k~~~~~~~~~~~~~~~~~~ 333 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNGR-------GLEGHV-EQSSLLSSIVKLKDDQFVKCDTLLNFANHGGKLSILG 333 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhcc-------ccccce-eeeeeecchhhhcceeeeehHHHHHHHhcCCeEeecc
Confidence 666766655 3444566776653322111 111110 00000000000 0 000000111222222
Q ss_pred C--CCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccc-
Q 001391 492 G--KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNN- 568 (1088)
Q Consensus 492 ~--dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~- 568 (1088)
. ++.+...+..+... +.. .| .+..+++.++..+.+++.......-....+......
T Consensus 334 ~~~~~~l~~~~~~s~~~-----------------i~~--~~--~~~~~v~~~~~k~~~~v~~~~~~~~~~~~~~h~~~s~ 392 (967)
T KOG0974|consen 334 NKGEKELITFESDSMLR-----------------IIF--SC--TNDDWVAHMSNKGDIYVAWHQNTIVITTSSLHRKLSA 392 (967)
T ss_pred cccccceeeeeeccCcc-----------------cee--hc--cccceeeeccCCCcEEEEEeecccCccchhHHHHHhh
Confidence 2 23333322221110 000 00 122344444444444443322111000000000000
Q ss_pred ----eeeeee------eccccCceEEEEE-eeeCCCEEEEEcCCCcEEEEeCCccccccccc-ccccccCcce--eeccc
Q 001391 569 ----VFLVAE------FSSCFGARIMCLD-ASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSV-ALHVEVSPLN--YFKGA 634 (1088)
Q Consensus 569 ----~~l~~~------~~~~h~~~It~l~-~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~-~~~~~l~~~~--~~~g~ 634 (1088)
..+.+. +...-+-+..+.+ .+|-+.+.+.+.+... ..+......+..... +......... +..+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~ad~~~i~~~~~f~-~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l 471 (967)
T KOG0974|consen 393 NPISQVCEASYVASKLIDGSIQVRNLSGSLESFADVLNIRSLKEFR-LPFAFRIPCLTSVVEDNLILIGSRHGELVLYNL 471 (967)
T ss_pred CcccceeeeeeehhhccCCcchhhhhhcccccccceeEEeeeeeec-cccCCCCcceecccCcceEEEccCcCcEEEecC
Confidence 000000 0000011111111 1222333333322222 111111111100000 0000000000 00000
Q ss_pred -ccccceeEE--EEEeccCCceEEEEecCCCeEEEEEeecCCcceeee-----cceeeeeeeeEEEeecCCCccCcccce
Q 001391 635 -HGISTVSTL--SVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFI-----GMKQVKELSLIQSVSAENNSIDLASCN 706 (1088)
Q Consensus 635 -hg~~~Vtsv--~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~-----~~~~~~~~~~ve~~~~~~~~~~~~~~~ 706 (1088)
.+.+..+.+ ...+....+.+-.+.++|+.+-+-.+..++.-..+. ++++..++.. -.+.++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r~~~~n~~~~L~~-----------~~~~s~ 540 (967)
T KOG0974|consen 472 DEPNDDIVLSLSRSHELDTGSSITCIRSKDNSAIFMTTGRDGYWSTIELIRGGTTNYPMELMN-----------KKSFST 540 (967)
T ss_pred CCCCccceeeccCcccccccccEEEEecCCCcEEEEEecCCcEEEEEEEecCccccccceeee-----------eccCCe
Confidence 000111111 001111224677788899988887777765421111 1112111111 123556
Q ss_pred EEEeeecccEEEEeCCcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCc
Q 001391 707 YAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHG 786 (1088)
Q Consensus 707 ~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg 786 (1088)
+..| +...|.+|+-.++..+.=..|++.||.|+... -|+|.+.|..+-+..-+-+.+.. -.++.+.|+
T Consensus 541 v~~g-~~~~~~~~~k~n~~~~gf~st~f~l~n~T~~~--------~i~~~~cGg~hr~wal~g~t~~~---~~~re~~~~ 608 (967)
T KOG0974|consen 541 VSSG-ALPSKFINWKGNLLIVGFYSTSFILWNETNET--------PIFETYCGGSHRIWALNGSTDNQ---FNFREIASS 608 (967)
T ss_pred eeec-chhhhhccCCCceEEEEEEeccceEeccccCc--------eeEEEEeCCeeEEeecCCccccc---eeeeecccc
Confidence 7788 88999999999999999999999999999753 28899998877544433232221 145667888
Q ss_pred ceEEEEEEeccccccccccccccCCCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccc
Q 001391 787 REIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISA 866 (1088)
Q Consensus 787 ~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~ 866 (1088)
++|++..... ....++..|.|++.|| +.... .+.+.-.+.+|.+|++++..+-.-.++....
T Consensus 609 ~~i~~~~~~~--------------~~s~~~~nglh~~~ir--ai~~~--~~~ttv~~~~~~~~t~~~~a~~~~~~~l~sv 670 (967)
T KOG0974|consen 609 QLIRQKIDNL--------------SRNSWISNGLHGREIR--AISFS--PYSTTVSLDEHLSGSAVRSASCDGNIKLISV 670 (967)
T ss_pred cEEEEEeecc--------------cccccccCCCCCCcee--eeEec--ccccceecccCCcceeEEeeeccccceeEEE
Confidence 8888766542 2367999999999999 33322 2566778889988876666554333322222
Q ss_pred cccCccccccccCccccCCCCcEEEEEecceeEEEEEEEEeccccccccceeecccccCCCccccccCCCCceEEeeecc
Q 001391 867 VVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLST 946 (1088)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1088)
...+.++..-..++. ++......+.+++.+..++ .+. -....+..+..+++||+.+
T Consensus 671 ~~v~~~~~~t~~~~~-d~~~g~~~~~~~~gkr~i~-----~~~------------------~l~~~s~e~~~~~~~s~~~ 726 (967)
T KOG0974|consen 671 IFVNENLQCTDWYDE-DDENGTVYLLTGGGKRKIS-----SEN------------------ILWRSSHELDEVWDRSLRR 726 (967)
T ss_pred EecccCcccCCCCCc-CCCCCcEEEEEeccceeec-----hhh------------------hHhhhhhhhcccChhHhhh
Confidence 222223322222222 2233566777777777777 110 1112344557899999999
Q ss_pred CCCCCCCCCCC
Q 001391 947 DMPTKNSSTHG 957 (1088)
Q Consensus 947 ~~~~~~~~~~~ 957 (1088)
|||.||.+..|
T Consensus 727 ~~~~~~~p~~R 737 (967)
T KOG0974|consen 727 HRPVKYDPETR 737 (967)
T ss_pred cCceeECCCcc
Confidence 99998876644
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=173.87 Aligned_cols=271 Identities=19% Similarity=0.252 Sum_probs=206.7
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CC
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EK 97 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~ 97 (1088)
.|..++|- || |..|+.+.|..+.|||...|.++.++++|++ .|.+++++ .|| .++|+++ |+
T Consensus 14 ci~d~afk--PD----GsqL~lAAg~rlliyD~ndG~llqtLKgHKD-tVycVAys-------~dG----krFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFK--PD----GTQLILAAGSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYA-------KDG----KRFASGSADK 75 (1081)
T ss_pred chheeEEC--CC----CceEEEecCCEEEEEeCCCcccccccccccc-eEEEEEEc-------cCC----ceeccCCCce
Confidence 78899999 99 7777777778999999999999999999888 69999999 888 6777766 99
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeec-cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
.|.+|+-..++ .+ -.|.+.|.|+.|+| -...|+|++- ...-+|..+.....+ .+..
T Consensus 76 ~VI~W~~klEG------------------~LkYSH~D~IQCMsFNP---~~h~LasCsL-sdFglWS~~qK~V~K-~kss 132 (1081)
T KOG1538|consen 76 SVIIWTSKLEG------------------ILKYSHNDAIQCMSFNP---ITHQLASCSL-SDFGLWSPEQKSVSK-HKSS 132 (1081)
T ss_pred eEEEecccccc------------------eeeeccCCeeeEeecCc---hHHHhhhcch-hhccccChhhhhHHh-hhhh
Confidence 99999866332 12 25999999999999 8888999874 346688776543322 1112
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
.+ +.++++ ..||.+++-|-.+|+|.+-+...+ ....+.+-.|.+
T Consensus 133 ~R--~~~CsW---tnDGqylalG~~nGTIsiRNk~gE-------------------------------ek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 133 SR--IICCSW---TNDGQYLALGMFNGTISIRNKNGE-------------------------------EKVKIERPGGSN 176 (1081)
T ss_pred ee--EEEeee---cCCCcEEEEeccCceEEeecCCCC-------------------------------cceEEeCCCCCC
Confidence 22 233333 578999999999999998865410 222344445678
Q ss_pred CCEEEEEEcCCC-----CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc
Q 001391 257 GSIFRIEWSSCG-----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 257 ~~V~~v~~sp~g-----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
.+|++++|+|.. ..++......++.++.+... .++ ....-.-...|+.+. |.+++.|+.|+.
T Consensus 177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---------~Ig--k~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---------QIG--KDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------eec--ccccCCCCchhheeccCCcEEEEccCCCc
Confidence 899999999964 46777888888888888763 221 111112233466654 889999999999
Q ss_pred EEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 330 CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 330 i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+|..+|-.+.++..... .||.++..|++++++.|+.||+|..|++-
T Consensus 246 L~~fTR~GvrLGTvg~~D~-WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVGEQDS-WIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEeecCeEEeeccccce-eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999998988877665 69999999999999999999999999883
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-17 Score=164.71 Aligned_cols=267 Identities=15% Similarity=0.218 Sum_probs=192.0
Q ss_pred EEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 59 ~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
.+...+..-||++.|. +.|. ++.+++.|++++|||.+.+. -...+....+.|.+.|+.|
T Consensus 7 pi~s~h~DlihdVs~D-------~~GR---RmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFD-------FYGR---RMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRV 65 (361)
T ss_pred ccccCCcceeeeeeec-------ccCc---eeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEE
Confidence 3443233369999998 6672 56666779999999986432 1367778889999999999
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCCC-------ceE-EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNS-------SII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-------~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
.|.+ .+=|+.+|+++.|+++.||.-... +.+ .+.-...++.++.+.|.+. .-|..+|+++.||.++||+.
T Consensus 66 ~WAh-PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~-hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 66 VWAH-PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPK-HLGLKLAAASADGILRIYEA 143 (361)
T ss_pred EecC-ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecch-hcceEEEEeccCcEEEEEec
Confidence 9976 236889999999999999986311 111 1111334556777777543 45889999999999999987
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeee-EEEeCCCCCEEEEEEcCC---CCEEEEEECC-----CcEE
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLVGHEGSIFRIEWSSC---GSKLVSVSDD-----RSAR 281 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~gh~~~V~~v~~sp~---g~~l~s~s~D-----g~v~ 281 (1088)
-. ...++-|..+...+.+ -....+.....||.|+|. ..+|+.|+.+ +.++
T Consensus 144 ~d---------------------p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~ 202 (361)
T KOG2445|consen 144 PD---------------------PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVK 202 (361)
T ss_pred CC---------------------ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceE
Confidence 51 1122223322211111 112246778899999974 3577887776 5789
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC------CEEEEEeCCCcEEEEcCCC------------------
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG------------------ 337 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~------~~l~sg~~Dg~i~vWd~~~------------------ 337 (1088)
||....... .-..+. .+.+|+.+|++++|.| .+|++++.|| |+||.+..
T Consensus 203 Iye~~e~~r----Kw~kva--~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 203 IYEYNENGR----KWLKVA--ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred EEEecCCcc----eeeeeh--hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence 998876531 013333 7789999999999984 4799999999 99999842
Q ss_pred ---ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 338 ---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 338 ---~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+.+..+..|.+ .||.+.|+-.|..|++.|.||.||+|..
T Consensus 276 l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 276 LPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred cceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 23456778998 6999999999999999999999999986
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-15 Score=170.61 Aligned_cols=480 Identities=11% Similarity=0.095 Sum_probs=274.7
Q ss_pred EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLF 102 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw 102 (1088)
-.|| +| .++++...+..|.||...||.++..+..+.. .+..+.+.|. +.. ...++.++-+|.|++|
T Consensus 22 avfS--nD----~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a-~l~s~~~~~~-----~~~--~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 22 AVFS--ND----AKFLFLCTGNFVKVYSTATGECITSLEDHTA-PLTSVIVLPS-----SEN--ANYLIVCSLDGTIRVW 87 (792)
T ss_pred cccc--cC----CcEEEEeeCCEEEEEecchHhhhhhcccccC-ccceeeecCC-----Ccc--ceEEEEEecCccEEEe
Confidence 3588 88 8999999999999999999999998887555 7899998854 221 1256667779999999
Q ss_pred EeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC-----------CCCEEEEEEcCCc--EEEEEcCCCce
Q 001391 103 ELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-----------GNRSLAIGCSDNS--IRVWDISNSSI 169 (1088)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~-----------d~~~lasgs~Dg~--V~iWd~~~~~~ 169 (1088)
|.... .+++++..+ -.|.++.+.|.-. +-..+.+++.+-. ++-+.+.+...
T Consensus 88 d~~~~---------------~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 88 DWSDG---------------ELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred cCCCc---------------EEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 98853 333333222 2233333322000 1111221211111 11111111000
Q ss_pred --EEEeccC--CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 170 --ILEVHSP--ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 170 --~~~~~~~--~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
...+..+ ..++++ .+.+.. ..-..+..+.+|+..... . .
T Consensus 152 ~~~d~~~~~~~~~~I~~-------~~~ge~-~~i~~~~~~~~~~v~~~~--~---------------------------~ 194 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVD-------NNSGEF-KGIVHMCKIHIYFVPKHT--K---------------------------H 194 (792)
T ss_pred cchhhhhhhcCCccEEE-------cCCceE-EEEEEeeeEEEEEecccc--e---------------------------e
Confidence 0000001 122222 233333 333345567788776110 0 0
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
......-..|...+++.+++|++++++++..||.|.+|.-..... ..... ..+.-|...|.++.|+ |.+|+|
T Consensus 195 ~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----~~~t~-t~lHWH~~~V~~L~fS~~G~~LlS 268 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----DSETC-TLLHWHHDEVNSLSFSSDGAYLLS 268 (792)
T ss_pred eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----ccccc-eEEEecccccceeEEecCCceEee
Confidence 001111235777799999999999999999999999997544111 11111 2666788999999998 899999
Q ss_pred EeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC-CCCcccCCccccccCCCcceE
Q 001391 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIF 401 (1088)
Q Consensus 324 g~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (1088)
||..|.+.+|.+ +++ .+-+..-.. +|..+.++||+.+.+....|+.|.+-..... ...++.+-.. .
T Consensus 269 GG~E~VLv~Wq~~T~~-kqfLPRLgs-~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~------~---- 336 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGK-KQFLPRLGS-PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP------P---- 336 (792)
T ss_pred cccceEEEEEeecCCC-cccccccCC-eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC------C----
Confidence 999999999999 444 333444444 8999999999999999999999999877332 1111111110 0
Q ss_pred EeeeCCCccceeeccCCCCceEEEEecc-CCeEEEEecCCeEEEEEeccCCcceeEEeee-ecCCcc----eEEEecCCC
Q 001391 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATNHGYLYHTKLCDMDSVNWNKILQ-VSEGMP----IICMDLLSN 475 (1088)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~-~~~~~~----i~~l~~~~~ 475 (1088)
.+.. -....+-.+.+++.| .+.++..+..|.+..+++.......-..+.. ...... +...++..
T Consensus 337 ---~~~~------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~- 406 (792)
T KOG1963|consen 337 ---TPST------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR- 406 (792)
T ss_pred ---Cccc------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh-
Confidence 0000 011223456677777 4566666777777777776655432111111 111111 11111111
Q ss_pred CCCCcCCCCCeEEEec--------CCC--CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecC-CCeEEEEECCC
Q 001391 476 EPKYPCGIDDWVALGD--------GKG--NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPK 544 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~--------~dg--~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~L~s~~~d 544 (1088)
...+.+++++. .|| .+++|....... ...+..... .+++....+.....+ ....+++++.|
T Consensus 407 -----~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k--t~~L~T~I~-~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 407 -----SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK--TFILNTKIN-NPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred -----hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc--eeEEEEEEe-cCCCceeEEEEEecCcccceeEEeccC
Confidence 11245666543 233 577888765432 223332222 233323222222333 33378899999
Q ss_pred CeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 545 GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 545 g~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
|.+++|-+.+....... ...+....+.. -|..++++++||.||.+|++| .+++|.|||..+
T Consensus 479 g~~KiW~~~~~~n~~k~--~s~W~c~~i~s---y~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 479 GDFKIWVFTDDSNIYKK--SSNWTCKAIGS---YHKTPITALCFSQDGSLLAVS-FDDTITIWDYDT 539 (792)
T ss_pred CeEEEEEEecccccCcC--ccceEEeeeec---cccCcccchhhcCCCcEEEEe-cCCEEEEecCCC
Confidence 99999999654432221 12222222222 378899999999999888664 677999999887
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-16 Score=174.96 Aligned_cols=270 Identities=12% Similarity=0.102 Sum_probs=186.7
Q ss_pred CCCCCceEEecCCCcee------eeeEEEEEeccCCCCCCCCEE-EEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQYL------GEISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~~------~~V~~v~fs~~pd~~~~~~~l-aag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.|++|++||+.+++.. ..+.+++|+ |+ ++.+ +++. ++.|++||..+++.+..+..+. .+..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~--~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~ 79 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLS--KD----GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--DPELFA 79 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCCCCceEEC--CC----CCEEEEEECCCCeEEEEECCCCcEEEeccCCC--CccEEE
Confidence 46899999999988722 236789999 98 7766 4454 6999999999998887776533 356788
Q ss_pred ecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
++ |+++ .++++. .++.+++||+... +.+..+.. ...+.+++|+| ++.+++
T Consensus 80 ~~-------~~g~---~l~~~~~~~~~l~~~d~~~~---------------~~~~~~~~-~~~~~~~~~~~---dg~~l~ 130 (300)
T TIGR03866 80 LH-------PNGK---ILYIANEDDNLVTVIDIETR---------------KVLAEIPV-GVEPEGMAVSP---DGKIVV 130 (300)
T ss_pred EC-------CCCC---EEEEEcCCCCeEEEEECCCC---------------eEEeEeeC-CCCcceEEECC---CCCEEE
Confidence 88 7763 444444 4799999999742 23333332 23468899999 999999
Q ss_pred EEEcCC-cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 152 IGCSDN-SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 152 sgs~Dg-~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
++..++ .+.+||..+++....+..... ...+.+ ++++..++ ++..++.|++||+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~---s~dg~~l~~~~~~~~~v~i~d~~------------------ 187 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQR--PRFAEF---TADGKELWVSSEIGGTVSVIDVA------------------ 187 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCCC--ccEEEE---CCCCCEEEEEcCCCCEEEEEEcC------------------
Confidence 888765 567789988877655432222 122333 57787775 45569999999998
Q ss_pred CCCCCceeEecccccceeeeEEEeCC-----C--CCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGH-----E--GSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh-----~--~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
+.+.+..+..+ . .....++|+|++++++. .+.++.+.+||..+.+. +.
T Consensus 188 ---------------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~--------~~- 243 (300)
T TIGR03866 188 ---------------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV--------LD- 243 (300)
T ss_pred ---------------cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE--------EE-
Confidence 33333332211 1 12356889999998544 45567899999987532 22
Q ss_pred eeeeccCcceEEEEEC--CCEEEEE-eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcC
Q 001391 302 SVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~--~~~l~sg-~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
. ..+...+++++|+ +.+|+++ +.++.|++||+ +++.+..+.... ..+.++++|
T Consensus 244 -~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~ 300 (300)
T TIGR03866 244 -Y-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR--LPWGVVVRP 300 (300)
T ss_pred -E-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc--ccceeEeCC
Confidence 1 1234578899998 5677775 56899999999 778788887543 468998875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=183.46 Aligned_cols=331 Identities=13% Similarity=0.146 Sum_probs=199.0
Q ss_pred EEEEEcC---CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEc
Q 001391 260 FRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 260 ~~v~~sp---~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd 334 (1088)
++..|++ ....|+.+.+||.|.++|....... .++-.......|...|.++.|- ...|++++.|.++++||
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 4466765 3356888999999999998775430 0111112567799999999998 47899999999999999
Q ss_pred C-CCceeEE--EcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCcc
Q 001391 335 S-DGKQLKM--IKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (1088)
Q Consensus 335 ~-~~~~~~~--~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1088)
+ .+++... +.+|.+ .|.+++|.|.. ..+++||+||.|.|||++-.....++... ..++.
T Consensus 129 vk~s~l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~--------~~~~~-------- 191 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD--------NRIYG-------- 191 (720)
T ss_pred eccceeecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh--------hhhhc--------
Confidence 9 5555544 889999 79999999865 47899999999999999532211111000 00000
Q ss_pred ceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEe
Q 001391 411 QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1088)
Q Consensus 411 ~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1088)
.+.+.- .|. + ....+..+|. .........|..+.+ .++..||++
T Consensus 192 ------~~n~~p-----tps-k--------------p~~kr~~k~k-A~s~ti~ssvTvv~f---------kDe~tlaSa 235 (720)
T KOG0321|consen 192 ------RHNTAP-----TPS-K--------------PLKKRIRKWK-AASNTIFSSVTVVLF---------KDESTLASA 235 (720)
T ss_pred ------cccCCC-----CCC-c--------------hhhccccccc-cccCceeeeeEEEEE---------eccceeeec
Confidence 000000 000 0 0000001110 000000111222222 355788888
Q ss_pred cC-CCCEEEEEEcCCCcCcceee--eeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCccc
Q 001391 491 DG-KGNMTIVRVVGDVHTPQLSF--TFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTN 567 (1088)
Q Consensus 491 ~~-dg~I~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 567 (1088)
+. |+.|++||+..........- ....+....+..-.+.++....|.+|++.+.|+.|++|++........ ...
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~----~~~ 311 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV----AEF 311 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch----hhc
Confidence 87 99999999986543211111 111111111111122233445578888888899999999985431100 000
Q ss_pred ceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEe
Q 001391 568 NVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAK 647 (1088)
Q Consensus 568 ~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~ 647 (1088)
...+...|. | .-..|||+.+|++|+.|...++|.++.... +...+.||. -.||.|+|.+
T Consensus 312 sg~~~~sf~------v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~------------~~~~l~Ght--~eVt~V~w~p 370 (720)
T KOG0321|consen 312 SGKLNSSFY------V-KSELSPDDCSLLSGSSDEQAYIWVVSSPEA------------PPALLLGHT--REVTTVRWLP 370 (720)
T ss_pred cCcccceee------e-eeecCCCCceEeccCCCcceeeeeecCccC------------ChhhhhCcc--eEEEEEeecc
Confidence 111111111 1 112579999999999999999999987422 334455665 4799999997
Q ss_pred ccCCceEEEEecCCCeEEEEEeecCCc
Q 001391 648 LRSNQTEIRSTGGDGCICYLEYDKDRE 674 (1088)
Q Consensus 648 ~~~~~~~l~t~g~Dg~i~iw~~~~~~~ 674 (1088)
+.. .-++|+++|-.+++|++..+..
T Consensus 371 S~~--t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 371 SAT--TPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred ccC--CCceeeccCcceEEEeccCchh
Confidence 533 3588999999999999976543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=174.19 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=116.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eE---EEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LI---RPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~---~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|...|+.+.|+ |- ...+||+|+ |..|+||.+..|- .+ ...-++....|.++.|+|. .| .
T Consensus 78 H~d~VtDl~Fs--pF---~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpT-----aD-----g 142 (1012)
T KOG1445|consen 78 HGDQVTDLGFS--PF---ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPT-----AD-----G 142 (1012)
T ss_pred ccceeeccCcc--cc---chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccC-----cC-----c
Confidence 66779999999 74 246888888 8999999998542 22 1223455567899999965 45 6
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-Cc
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SS 168 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~ 168 (1088)
+++++..+++.|||+.+ .+.+..+.+|.+.|.++.|+. ||.+|++.+.|..|+|||.+. ++
T Consensus 143 il~s~a~g~v~i~D~st---------------qk~~~el~~h~d~vQSa~Wse---DG~llatscKdkqirifDPRa~~~ 204 (1012)
T KOG1445|consen 143 ILASGAHGSVYITDIST---------------QKTAVELSGHTDKVQSADWSE---DGKLLATSCKDKQIRIFDPRASME 204 (1012)
T ss_pred eEEeccCceEEEEEccc---------------CceeecccCCchhhhcccccc---CCceEeeecCCcceEEeCCccCCC
Confidence 88888899999999996 456778889999999999999 999999999999999999875 45
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEec
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVD 211 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~ 211 (1088)
.++..++|....-.-+.+. .+-..|++.+. -.+|++||.+
T Consensus 205 piQ~te~H~~~rdsRv~w~---Gn~~rlisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 205 PIQTTEGHGGMRDSRVLWA---GNWERLISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred ccccccccccchhheeeec---cchhhhhhcccchhhheeeeeeecc
Confidence 5666665554311112221 11223444332 3678999987
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-17 Score=177.75 Aligned_cols=292 Identities=17% Similarity=0.235 Sum_probs=213.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+-|.||... |. |.+|++|+ ||+|+||.+.||+++++++. .+ -|.+|+|+|. ++- -+||++
T Consensus 399 Htg~Vr~iSvd--p~----G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~-~I~~vaw~P~-----~~~----~vLAvA 461 (733)
T KOG0650|consen 399 HTGLVRSISVD--PS----GEWLASGSDDGTVRIWEIATGRCVRTVQF-DS-EIRSVAWNPL-----SDL----CVLAVA 461 (733)
T ss_pred cCCeEEEEEec--CC----cceeeecCCCCcEEEEEeecceEEEEEee-cc-eeEEEEecCC-----CCc----eeEEEE
Confidence 56889999999 88 99999999 69999999999999999986 44 5999999965 443 455555
Q ss_pred CCCEEEEEEeccCC-------------CCCCCCCCccc-c--------c-cceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 95 GEKRVKLFELNFEL-------------SPNSQYQPETC-V--------N-LSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 95 gd~~v~iw~l~~~~-------------~~~~~~~~~~~-~--------~-~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
-+..+-|.+...+. .+... .|+.. + . ..-++..-.|...|..|.|+. .|.+|+
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~-~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDYla 537 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNES-EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDYLA 537 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCcc-CCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCceEE
Confidence 44446666644321 00000 01000 0 0 011234446889999999999 999999
Q ss_pred EEEc---CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 152 IGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 152 sgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
|... ...|.|.++.......-+. ..+..+..+.|++. ..+++.++ -..|++||+.
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs---~p~lfVaT-q~~vRiYdL~----------------- 595 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPS---KPYLFVAT-QRSVRIYDLS----------------- 595 (733)
T ss_pred EeccCCCcceEEEEecccccccCchh-hcCCceeEEEecCC---CceEEEEe-ccceEEEehh-----------------
Confidence 9755 3568888887654443322 22334556667543 33555544 3679999998
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~ 308 (1088)
....+..+.....+|..++.+|.|..|+.++.|+.+..+|+.-.. ++.+ ++.-|.
T Consensus 596 ----------------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss-------kPyk--~lr~H~ 650 (733)
T KOG0650|consen 596 ----------------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-------KPYK--TLRLHE 650 (733)
T ss_pred ----------------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc-------chhH--Hhhhhh
Confidence 555566666677889999999999999999999999999998752 3444 788899
Q ss_pred cceEEEEECC--CEEEEEeCCCcEEEEcC---C----C---ceeEEEcccCCC---CeEEEEEcCCCCEEEEEeCCCCEE
Q 001391 309 ARVWDCCLTD--SFIITAGEDCTCRVWGS---D----G---KQLKMIKEHIGR---GIWRCLYDSLSSLLVTAGFDSAIK 373 (1088)
Q Consensus 309 ~~I~~v~~~~--~~l~sg~~Dg~i~vWd~---~----~---~~~~~~~~h~~~---~V~~l~~~~dg~~l~tg~~Dg~I~ 373 (1088)
..+++++|++ .++++|+.||++.|+.- + . -+++.+.+|... +|..+.|+|...+|+++|.||+|+
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 9999999995 68999999999999874 1 1 245677888641 488888999999999999999999
Q ss_pred EE
Q 001391 374 VH 375 (1088)
Q Consensus 374 iw 375 (1088)
+|
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 98
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=170.49 Aligned_cols=250 Identities=17% Similarity=0.234 Sum_probs=174.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC----------------CeeEEEEeeeCCcceEEEEeccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------------GTLIRPFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t----------------g~~~~~~~~~~~~~V~~i~~s~~~~ 78 (1088)
|.+.|.-+.-+ +- +...+.|+=+ .|.|+|||+.. .+.+.++.+|.+ -=++++|||.
T Consensus 150 h~g~~NRvr~~--~~--~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~LdWSp~-- 222 (440)
T KOG0302|consen 150 HYGGINRVRVS--RL--GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGLDWSPI-- 222 (440)
T ss_pred cccccceeeec--cc--CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceeeecccc--
Confidence 45667777766 33 1133444433 49999999742 356788888776 4699999954
Q ss_pred ccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccc-eeeeccCCCCcEEEEEEecccCCCCEEEEEEcC
Q 001391 79 TEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLS-LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~-~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D 156 (1088)
..| .|+++. -+.|++|...++. .+ -...+.+|+..|-+++|+| .....+|+|+.|
T Consensus 223 ---~~g-----~LlsGDc~~~I~lw~~~~g~-------------W~vd~~Pf~gH~~SVEDLqWSp--tE~~vfaScS~D 279 (440)
T KOG0302|consen 223 ---KTG-----RLLSGDCVKGIHLWEPSTGS-------------WKVDQRPFTGHTKSVEDLQWSP--TEDGVFASCSCD 279 (440)
T ss_pred ---ccc-----ccccCccccceEeeeeccCc-------------eeecCccccccccchhhhccCC--ccCceEEeeecC
Confidence 343 444444 4789999988633 11 2245668999999999999 355689999999
Q ss_pred CcEEEEEcCCCce---EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 157 NSIRVWDISNSSI---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 157 g~V~iWd~~~~~~---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
|+|+|||++.+.. +.. +.+ .+-+..+.+ +....+||+|+.||+++|||++.-
T Consensus 280 gsIrIWDiRs~~~~~~~~~-kAh-~sDVNVISW---nr~~~lLasG~DdGt~~iwDLR~~-------------------- 334 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST-KAH-NSDVNVISW---NRREPLLASGGDDGTLSIWDLRQF-------------------- 334 (440)
T ss_pred ceEEEEEecCCCccceeEe-ecc-CCceeeEEc---cCCcceeeecCCCceEEEEEhhhc--------------------
Confidence 9999999998833 332 222 222333333 344559999999999999999811
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCccc------CCCCceeeeceeeec
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYG 306 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~------~~~~~~~i~~~~~~~ 306 (1088)
..+++++.|+-|+.+|++|.|+|.. ..+++++.|.+|.|||+...... .....+.+.+..++-
T Consensus 335 ----------~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 335 ----------KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred ----------cCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 1457899999999999999999954 67888899999999999764331 001112233335566
Q ss_pred cC--cceEEEEEC---CCEEEEEeCCCcE
Q 001391 307 HN--ARVWDCCLT---DSFIITAGEDCTC 330 (1088)
Q Consensus 307 h~--~~I~~v~~~---~~~l~sg~~Dg~i 330 (1088)
|. ..+-.+.|+ +.++++.+.||.-
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEeccccee
Confidence 64 468889998 7899999999854
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-17 Score=164.19 Aligned_cols=323 Identities=14% Similarity=0.182 Sum_probs=219.9
Q ss_pred eeeeeEEEEEeccCC-CCCCCCEEEEEeCCeEEEEECCCC---eeEEEEeee-CCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPS-HLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd-~~~~~~~laag~d~~I~vwd~~tg---~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
|..+|.+++|. +- +-..-..+|+.++..+.+|++... +.+..+... +...-+.++|+-+ ..++ +.+
T Consensus 37 ~~~~I~gv~fN--~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd----~~~~---~p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFN--SFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD----SNTG---NPF 107 (385)
T ss_pred CCCccceeeee--hhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec----CCCC---Cee
Confidence 45679999998 31 001123555556689999998653 334444332 3345677777622 1222 267
Q ss_pred EEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 91 la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+|++| -|.|+|.|+.. .++...+.+|.+.|+.+.|+| .+.++|++++.|.+||+|++++..+
T Consensus 108 la~~G~~GvIrVid~~~---------------~~~~~~~~ghG~sINeik~~p--~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVS---------------GQCSKNYRGHGGSINEIKFHP--DRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred EEeecceeEEEEEecch---------------hhhccceeccCccchhhhcCC--CCCcEEEEecCCceEEEEeccCCeE
Confidence 77776 68999999985 567788999999999999999 2447999999999999999999999
Q ss_pred EEEecc--CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 170 ILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 170 ~~~~~~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
+..+.+ .++..+.|+.+ +.++.+|++++.|.+|++|++...+...........++++......+.. ..-
T Consensus 171 v~VfGG~egHrdeVLSvD~---~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~------~~f 241 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDF---SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK------THF 241 (385)
T ss_pred EEEecccccccCcEEEEEE---cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc------ccc
Confidence 988763 33455778877 6889999999999999999998544333333223333333221110000 011
Q ss_pred eeE-EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc-----CCC-CceeeeceeeeccCcceEEEEEC---
Q 001391 248 NLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-----DSD-SIEEVGSSVLYGHNARVWDCCLT--- 317 (1088)
Q Consensus 248 ~~~-~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~-----~~~-~~~~i~~~~~~~h~~~I~~v~~~--- 317 (1088)
+.. ...-|...|-|+.|- |.+++|-|-++.|..|....-... .+. ....+. .+.-....||-+.|.
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~--~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG--EFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeee--EeccCccceEEEEEeecH
Confidence 111 334688888888885 578999999999999998322110 000 011222 334455678888887
Q ss_pred -CCEEEEEeCCCcEEEEcCC-Cce--eEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 318 -DSFIITAGEDCTCRVWGSD-GKQ--LKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~~-~~~--~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
...|+.|.+.|.+.+||++ ..+ ..++ ....++.|...+|+.|+.+|+....|++|.-||.
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 5789999999999999993 222 2222 2223456999999999999999999999999986
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=186.73 Aligned_cols=285 Identities=13% Similarity=0.127 Sum_probs=194.6
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce----EEEeccCCceeEEEEe-eecCCCCCcEEEEEecCCeEEEE
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----ILEVHSPERCLLYSMK-LWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~----~~~~~~~~~~~~~s~~-~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
....|...+ +...|+.+|. ..+.||.+..... ..... ......++++ .-+...+.++||+++..|.|.+|
T Consensus 41 ~~nAIs~nr---~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k-~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 41 KANAISVNR---DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFK-TKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred ccceEeecC---CcceeEEecc-cceeeEeeCcccCCcceeeecc-cccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 455667777 7777887763 4678887754321 11111 1222233321 11124567899999999999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~ 287 (1088)
|+.- ....+.+..|..|+..+.++.|++.. .+|+|||.||+|++||++.
T Consensus 116 dlnk------------------------------~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 116 DLNK------------------------------SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ecCc------------------------------cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 9980 01356677889999999999999854 6789999999999999998
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCE
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~ 362 (1088)
.+. . .++.+....|.++.|+ +..|+++.+.|.+++||+ ..++..++..|.+ +|.++.|+|++.+
T Consensus 166 ~~S--------~--~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~ 234 (839)
T KOG0269|consen 166 KKS--------K--STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREW 234 (839)
T ss_pred ccc--------c--ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCce
Confidence 643 2 2667788899999998 689999999999999999 4577788999999 8999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe----c
Q 001391 363 LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT----N 438 (1088)
Q Consensus 363 l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t----~ 438 (1088)
|||||+|+.|+||+..+... .+...+. ...+|.+++|-|+....+++ .
T Consensus 235 lATGGRDK~vkiWd~t~~~~---------------~~~~tIn-------------Tiapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 235 LATGGRDKMVKIWDMTDSRA---------------KPKHTIN-------------TIAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred eeecCCCccEEEEeccCCCc---------------cceeEEe-------------ecceeeeeeeccCccchhhhhhccc
Confidence 99999999999999964321 1111221 12468899999977444332 3
Q ss_pred CCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 439 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
+-.|+.|++...--. . ..+.. +...+..+.+.. .+...+.+++.||.+..-.+.
T Consensus 287 dtsV~VWDvrRPYIP-~-~t~~e-H~~~vt~i~W~~-------~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIP-Y-ATFLE-HTDSVTGIAWDS-------GDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cceEEEEeecccccc-c-eeeec-cCccccceeccC-------CCceeeEeecCccHHHHhhhh
Confidence 334665554332211 1 11222 233444444422 345677788888877654443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=169.46 Aligned_cols=285 Identities=12% Similarity=0.201 Sum_probs=209.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC--CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t--g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
.+.|++|.|+ |. ..+|+++. |++++||-+.. ...+..+.. .+.+|....|. |+|. ..+++
T Consensus 213 ~~~I~sv~FH--p~----~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~-------p~G~---~~i~~ 275 (514)
T KOG2055|consen 213 HGGITSVQFH--PT----APLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFA-------PNGH---SVIFT 275 (514)
T ss_pred cCCceEEEec--CC----CceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeec-------CCCc---eEEEe
Confidence 4789999999 98 66666655 99999998753 345555553 55589999999 7773 46666
Q ss_pred EC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 94 FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 94 ~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
++ .+....||+.... ...+..+.++. ..+....++| ++++||..|..|.|.+-...+++.+.
T Consensus 276 s~rrky~ysyDle~ak-------------~~k~~~~~g~e~~~~e~FeVSh---d~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAK-------------VTKLKPPYGVEEKSMERFEVSH---DSNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred cccceEEEEeeccccc-------------cccccCCCCcccchhheeEecC---CCCeEEEcccCceEEeehhhhhhhhh
Confidence 65 6789999998654 44555555655 4567788889 99999999999999999999999887
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
+++-.. .+..++| +.++..|++.+.+|.|.+||++ ...++++
T Consensus 340 s~KieG--~v~~~~f---sSdsk~l~~~~~~GeV~v~nl~---------------------------------~~~~~~r 381 (514)
T KOG2055|consen 340 SFKIEG--VVSDFTF---SSDSKELLASGGTGEVYVWNLR---------------------------------QNSCLHR 381 (514)
T ss_pred eeeecc--EEeeEEE---ecCCcEEEEEcCCceEEEEecC---------------------------------CcceEEE
Confidence 776433 2344444 3567888888899999999999 4556666
Q ss_pred EeCCCCCE--EEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe--
Q 001391 252 LVGHEGSI--FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-- 325 (1088)
Q Consensus 252 ~~gh~~~V--~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-- 325 (1088)
+.. .+.| +.++.++++.++|+||..|.|.|||..+... +..++++. .+..-...|+++.|+ .++|+.++
T Consensus 382 f~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~--s~~PkPik--~~dNLtt~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 382 FVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA--STNPKPIK--TVDNLTTAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred Eee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhc--cCCCCchh--hhhhhheeeeeeeeCcchhhhhhhhhc
Confidence 552 3444 4566679999999999999999999765422 12234554 556666789999998 35655555
Q ss_pred CCCcEEEEcC-CCceeEEEcc---cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+..+|+-.+ .-.....+.. .-+ .|+|++|+|.+.+++.|..+|.+.+|.+.
T Consensus 457 ~knalrLVHvPS~TVFsNfP~~n~~vg-~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 457 KKNALRLVHVPSCTVFSNFPTSNTKVG-HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEeccceeeeccCCCCCCccc-ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5667888776 3333333322 223 48999999999999999999999999873
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=171.44 Aligned_cols=282 Identities=15% Similarity=0.215 Sum_probs=203.2
Q ss_pred cceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
.+|.+|.|+ |.. .++.++| |++++||.++... ...++.+.--.-+|.+.+|.|
T Consensus 214 ~~I~sv~FH-------p~~----plllvaG~d~~lrifqvDGk~-------------N~~lqS~~l~~fPi~~a~f~p-- 267 (514)
T KOG2055|consen 214 GGITSVQFH-------PTA----PLLLVAGLDGTLRIFQVDGKV-------------NPKLQSIHLEKFPIQKAEFAP-- 267 (514)
T ss_pred CCceEEEec-------CCC----ceEEEecCCCcEEEEEecCcc-------------ChhheeeeeccCccceeeecC--
Confidence 379999999 554 4555555 9999999998543 345666666668899999999
Q ss_pred CCCC-EEEEEEcCCcEEEEEcCCCceEEE--eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCC
Q 001391 145 NGNR-SLAIGCSDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (1088)
Q Consensus 145 ~d~~-~lasgs~Dg~V~iWd~~~~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~ 221 (1088)
+|. .+++++.......||+.+.+.... ..+.+. .++..+.-++++.+|+..+..|.|.+....
T Consensus 268 -~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~---~~~e~FeVShd~~fia~~G~~G~I~lLhak---------- 333 (514)
T KOG2055|consen 268 -NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE---KSMERFEVSHDSNFIAIAGNNGHIHLLHAK---------- 333 (514)
T ss_pred -CCceEEEecccceEEEEeeccccccccccCCCCccc---chhheeEecCCCCeEEEcccCceEEeehhh----------
Confidence 998 899999999999999988765432 222222 233334447889999999999999999887
Q ss_pred CCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 222 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
++..+..++ -++.|..++|+.+++.|+.++.+|.|.+||++...+ +..
T Consensus 334 -----------------------T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~--------~~r 381 (514)
T KOG2055|consen 334 -----------------------TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC--------LHR 381 (514)
T ss_pred -----------------------hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce--------EEE
Confidence 556666555 568899999999999999999999999999998643 221
Q ss_pred eeeeccCcceEEEEE--CCCEEEEEeCCCcEEEEcC-------CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC--CC
Q 001391 302 SVLYGHNARVWDCCL--TDSFIITAGEDCTCRVWGS-------DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF--DS 370 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~--~~~~l~sg~~Dg~i~vWd~-------~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~--Dg 370 (1088)
+...|-- .=+++|. .+.+|++|+..|.|.|||. ..+++..+..-.. .|+++.|++|+++|+.++. +.
T Consensus 382 f~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~kn 459 (514)
T KOG2055|consen 382 FVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKN 459 (514)
T ss_pred EeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhcccc
Confidence 1222211 1134444 4899999999999999996 2356666666555 6999999999999887774 67
Q ss_pred CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEe
Q 001391 371 AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKL 447 (1088)
Q Consensus 371 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~ 447 (1088)
.+|+-.+... .+|+ ..|.. +..-+.|+|++|+|.+ .+.++..+|++..|++
T Consensus 460 alrLVHvPS~------------------TVFs-NfP~~-------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 460 ALRLVHVPSC------------------TVFS-NFPTS-------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEEeccce------------------eeec-cCCCC-------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 7888776321 1111 01111 1223579999999965 5555666777776554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=163.83 Aligned_cols=309 Identities=16% Similarity=0.241 Sum_probs=216.9
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeecc--CCCCcE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--RLSHWV 135 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~I 135 (1088)
..++..+..+|.+++|.+... .+ ....+|+.|.+.+.+|+...+. -...++.+. .|....
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~---~~---e~~vfatvG~~rvtiy~c~~d~------------~ir~lq~y~D~d~~Esf 92 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLG---CD---EPQVFATVGGNRVTIYECPGDG------------GIRLLQSYADEDHDESF 92 (385)
T ss_pred eehhccCCCccceeeeehhcC---CC---CCceEEEeCCcEEEEEEECCcc------------ceeeeeeccCCCCCcce
Confidence 334444556899999984321 11 1278999999999999987432 123444432 366778
Q ss_pred EEEEEecccCC-CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 136 FDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 136 ~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
+.++|.-...+ ..+||.||.-|.|+|.|+.++++...+.+|..+ +..+.+++. +.++|++++.|..|++|+++
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s-INeik~~p~--~~qlvls~SkD~svRlwnI~--- 166 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS-INEIKFHPD--RPQLVLSASKDHSVRLWNIQ--- 166 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc-chhhhcCCC--CCcEEEEecCCceEEEEecc---
Confidence 88888763323 358999999999999999999998888776543 445565533 35799999999999999999
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
+..++..| .||.+.|.++.|+++|.+++|++.|.++++|++..++..
T Consensus 167 ------------------------------~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 167 ------------------------------TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred ------------------------------CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 56666665 479999999999999999999999999999999854321
Q ss_pred C------------CC---Cc--eeeece-eeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-C-C-------------c
Q 001391 292 D------------SD---SI--EEVGSS-VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-D-G-------------K 338 (1088)
Q Consensus 292 ~------------~~---~~--~~i~~~-~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~-~-------------~ 338 (1088)
. +. +. ..+..+ +..-|...|-|+.|.++++++-+-++.|..|.. . + .
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T 296 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT 296 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence 0 00 00 001001 334588889999999999999999999999987 1 1 1
Q ss_pred eeEEEcccCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeecc
Q 001391 339 QLKMIKEHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (1088)
Q Consensus 339 ~~~~~~~h~~~~V~~l~~--~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (1088)
.+..+..... .||-+.| .|-++.||.|...|.|.+||++........ .+. -.
T Consensus 297 i~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t-------------tl~------------~s 350 (385)
T KOG1034|consen 297 ILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT-------------TLT------------HS 350 (385)
T ss_pred eeeEeccCcc-ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc-------------eEE------------ec
Confidence 2334444455 4887765 556789999999999999999653211100 000 01
Q ss_pred CCCCceEEEEeccCCeEEE-EecCCeEEEEE
Q 001391 417 SKSEYVRCLHLTSEDTLYI-ATNHGYLYHTK 446 (1088)
Q Consensus 417 ~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~ 446 (1088)
.....|+..+|+.++.+++ .+.++.+.+|+
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 1234699999999996655 46777777654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=194.46 Aligned_cols=234 Identities=23% Similarity=0.355 Sum_probs=194.7
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
..|...|.++..-. .++.+++|+.|..+-+|.+.....+..+.+|+. .+-++.| +.+..+|++|+.+|+|++|
T Consensus 25 ~~hsaav~~lk~~~---s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-pIeSl~f---~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRK---SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-PIESLTF---DTSERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhceeeeec---cceeeccCCCceeeccccccCCchhheeeccCC-cceeeec---CcchhhhcccccCCceeee
Confidence 36888888888866 788999999999999999987766666666654 4556666 5678899999999999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
|++ ..+.++.+.||...+.+|.|+|-+.+.++++.|..+++||.+..
T Consensus 98 Dle---------------------------------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 98 DLE---------------------------------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred ehh---------------------------------hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 999 77888899999999999999999999999999999999999864
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEE
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~t 365 (1088)
.+ .. ...+|...+..+.|+ |.++++|++|.+++|||+ .|+.+..|+.|.+ .+.++.|+|..-++++
T Consensus 145 Gc--------~~--~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 145 GC--------SH--TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAP 213 (825)
T ss_pred Cc--------ee--eecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhcc
Confidence 33 32 677799999999998 679999999999999999 8999999999999 5999999999999999
Q ss_pred EeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeE
Q 001391 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYL 442 (1088)
Q Consensus 366 g~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i 442 (1088)
||.|+++++||+++-.+ .. ..+.....|++.+|+|+++.+..+....+
T Consensus 214 Gs~d~tv~f~dletfe~------------------I~-----------s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEV------------------IS-----------SGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred CCCCceeeeeccceeEE------------------ee-----------ccCCccCCceeeeecCCceeeecCchhhh
Confidence 99999999999963110 00 01112356999999999987776654443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-15 Score=168.06 Aligned_cols=266 Identities=14% Similarity=0.135 Sum_probs=180.9
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~ 113 (1088)
++++++. |+.|++||+.+++.+..+..+. .+.+++|+ |+++ .++++. .++.|++||....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~-------~dg~---~l~~~~~~~~~v~~~d~~~~------ 63 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLS-------KDGK---LLYVCASDSDTIQVIDLATG------ 63 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEEC-------CCCC---EEEEEECCCCeEEEEECCCC------
Confidence 4566655 7999999999999988887643 47889999 7773 444444 4799999998753
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (1088)
+....+..+.. +..++|+| +++.++++ +.|+.|++||+.+.+.+..+..+.. ...+.+ +++
T Consensus 64 ---------~~~~~~~~~~~-~~~~~~~~---~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~---~~d 125 (300)
T TIGR03866 64 ---------EVIGTLPSGPD-PELFALHP---NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE--PEGMAV---SPD 125 (300)
T ss_pred ---------cEEEeccCCCC-ccEEEECC---CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC--cceEEE---CCC
Confidence 23344444433 56789999 88877554 5689999999998877776653321 233444 578
Q ss_pred CcEEEEEecCC-eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l~sg~~dg-~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+.+++++..++ .+.+||.. +......+. ....+..++|+|+++++
T Consensus 126 g~~l~~~~~~~~~~~~~d~~---------------------------------~~~~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTK---------------------------------TYEIVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCEEEEEecCCCeEEEEeCC---------------------------------CCeEEEEEE-cCCCccEEEECCCCCEE
Confidence 88998887765 46677876 333333332 22345789999999988
Q ss_pred EE-EECCCcEEEEEcCCCcccCCCCceeeeceee-eccCc--ceEEEEEC--CCEE-EEEeCCCcEEEEcC-CCceeEEE
Q 001391 272 VS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNA--RVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 272 ~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~~h~~--~I~~v~~~--~~~l-~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
+. +..++.|++||+.+++. ...+. ... ..+.. ....++|+ +.++ ++.+.++.+.+||. +++.+..+
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~-----~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKV-----IKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred EEEcCCCCEEEEEEcCccee-----eeeee-ecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 54 45689999999988643 11111 000 00111 23456777 4554 44456778999999 56655554
Q ss_pred cccCCCCeEEEEEcCCCCEEEEE-eCCCCEEEEEcCC
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQA 379 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg-~~Dg~I~iwd~~~ 379 (1088)
. +.. .+++++|+|++++|+++ +.+|.|++||+.+
T Consensus 246 ~-~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 246 L-VGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred E-eCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 3 333 58999999999998876 5699999999964
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=167.93 Aligned_cols=271 Identities=17% Similarity=0.257 Sum_probs=196.3
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|+.++|- ||| ..++...+..+.+||.+. +.++.++++|.+.|+|++++. |
T Consensus 14 ci~d~afk-------PDG----sqL~lAAg~rlliyD~nd---------------G~llqtLKgHKDtVycVAys~---d 64 (1081)
T KOG1538|consen 14 CINDIAFK-------PDG----TQLILAAGSRLLVYDTSD---------------GTLLQPLKGHKDTVYCVAYAK---D 64 (1081)
T ss_pred chheeEEC-------CCC----ceEEEecCCEEEEEeCCC---------------cccccccccccceEEEEEEcc---C
Confidence 58999999 888 566666677899999885 568889999999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
|+.+|+|+.|..|.+|+-.- + |
T Consensus 65 GkrFASG~aDK~VI~W~~kl----------E---------------G--------------------------------- 86 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKL----------E---------------G--------------------------------- 86 (1081)
T ss_pred CceeccCCCceeEEEecccc----------c---------------c---------------------------------
Confidence 99999999999999996410 0 0
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
+. -..|.+.|.|+.|+|-...|+||+-. ..-+|....+.. ....
T Consensus 87 ----------------------~L-kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V------------~K~k 130 (1081)
T KOG1538|consen 87 ----------------------IL-KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV------------SKHK 130 (1081)
T ss_pred ----------------------ee-eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH------------Hhhh
Confidence 00 02488999999999999999999875 456787766421 1222
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcc--cCCCCeEEEEEcCCC-----CEEEEEeCCCCEEEEEc
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLS-----SLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~--h~~~~V~~l~~~~dg-----~~l~tg~~Dg~I~iwd~ 377 (1088)
-..++.+++|. |.+++.|-.||+|.+-+..|++...+.. ....+||+++|+|.. ..++......++.+|.+
T Consensus 131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 131 SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 34578889997 7899999999999999887766555543 222489999999864 36777777788888887
Q ss_pred CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeE-EEEecCCeEEEEEeccCCcceeE
Q 001391 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKLCDMDSVNWN 456 (1088)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~l-l~~t~~g~i~~~~~~~~~~~~~~ 456 (1088)
.++.+.. .... +....|+.+.++|.+ ++++.++.+. ++........
T Consensus 211 sG~~Igk----~r~L--------------------------~FdP~CisYf~NGEy~LiGGsdk~L~---~fTR~GvrLG 257 (1081)
T KOG1538|consen 211 SGKQIGK----DRAL--------------------------NFDPCCISYFTNGEYILLGGSDKQLS---LFTRDGVRLG 257 (1081)
T ss_pred cceeecc----cccC--------------------------CCCchhheeccCCcEEEEccCCCceE---EEeecCeEEe
Confidence 6643321 0000 122468888888854 5566677665 4443333322
Q ss_pred EeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 457 ~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
.+ +..+.-|+.+.+.|+. +.++.|..||+|-.|++..
T Consensus 258 Tv--g~~D~WIWtV~~~PNs--------Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 258 TV--GEQDSWIWTVQAKPNS--------QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ec--cccceeEEEEEEccCC--------ceEEEEEccCeeehhhhHH
Confidence 22 2345668888886654 8999999999999998753
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-16 Score=158.11 Aligned_cols=288 Identities=14% Similarity=0.173 Sum_probs=201.6
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
-.|+.|+ +- |.+||+|. +|.|.|||..|-..-+.+..|-. +|.+++|| +||. .+|.++.|..
T Consensus 26 a~~~~Fs--~~----G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~WS-------~dgr---~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFS--RW----GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCWS-------RDGR---KLLTSSRDWS 88 (405)
T ss_pred cceEEec--cC----cceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEec-------CCCC---EeeeecCCce
Confidence 6799999 88 89999998 79999999999887777777655 79999999 8883 6666677999
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~ 178 (1088)
|.+||+..+. +++.+. ...+|+.+.|+|.. ....+|+- .+..-.+-++..+....--.....
T Consensus 89 i~lwDl~~gs---------------~l~rir-f~spv~~~q~hp~k-~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~ 150 (405)
T KOG1273|consen 89 IKLWDLLKGS---------------PLKRIR-FDSPVWGAQWHPRK-RNKCVATI-MEESPVVIDFSDPKHSVLPKDDDG 150 (405)
T ss_pred eEEEeccCCC---------------ceeEEE-ccCccceeeecccc-CCeEEEEE-ecCCcEEEEecCCceeeccCCCcc
Confidence 9999998643 333332 56889999999921 22334433 344455555554322111111222
Q ss_pred eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC-C
Q 001391 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-G 257 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~ 257 (1088)
..-.+..-..+.+.|.++++|+..|.+.++|.. +.++++.++--. .
T Consensus 151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~---------------------------------t~e~vas~rits~~ 197 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE---------------------------------TLECVASFRITSVQ 197 (405)
T ss_pred ccccccccccccCCCCEEEEecCcceEEEEecc---------------------------------hheeeeeeeechhe
Confidence 222222211236789999999999999999998 666777776555 7
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC-CCceeeeceeeec--cCcceEEEEEC--CCEEEEEe-CCCcEE
Q 001391 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-DSIEEVGSSVLYG--HNARVWDCCLT--DSFIITAG-EDCTCR 331 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~-~~~~~i~~~~~~~--h~~~I~~v~~~--~~~l~sg~-~Dg~i~ 331 (1088)
.|..+.++..|++++.-+.|+.||.|++..--.... .-.+... .++. ....-.+++|+ +.+++.++ .-..++
T Consensus 198 ~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~--K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH--KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH--HHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 899999999999999999999999999874211000 0001000 1110 11223567787 56665554 446799
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
||.. .|..++.+.+..+...-.+.|+|-...+++- ..|.+.+|...
T Consensus 276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 9999 8999999999887678889999988877777 78899999873
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=166.47 Aligned_cols=293 Identities=16% Similarity=0.192 Sum_probs=206.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
+.++|++++|+ |. ...++||+|. .|+|-+||+.+. .-+..+..|. ..|.+|.|+|. ... .+
T Consensus 185 ~~~Rit~l~fH--Pt--~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-~~Vs~l~F~P~-----n~s----~i 250 (498)
T KOG4328|consen 185 TDRRITSLAFH--PT--ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-GPVSGLKFSPA-----NTS----QI 250 (498)
T ss_pred cccceEEEEec--cc--CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-ccccceEecCC-----Chh----he
Confidence 56889999999 97 4457888888 699999999532 2344555544 48999999975 332 78
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
++++-||+|++-|++... .+.+..+.....++.++.|+. +...++.|..=|...+||++++..
T Consensus 251 ~ssSyDGtiR~~D~~~~i-------------~e~v~s~~~d~~~fs~~d~~~---e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNI-------------SEEVLSLDTDNIWFSSLDFSA---ESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeeccCceeeeeeecchh-------------hHHHhhcCccceeeeeccccC---CCccEEEeecccceEEEEeecCCcc
Confidence 888889999999998543 444555554556788899987 777777787777999999987654
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
...+..+.. -+.++++.+ ....++|+++.|++.+|||++.- .....++
T Consensus 315 ~~~~~lh~k-KI~sv~~NP--~~p~~laT~s~D~T~kIWD~R~l-----------------------------~~K~sp~ 362 (498)
T KOG4328|consen 315 YENLRLHKK-KITSVALNP--VCPWFLATASLDQTAKIWDLRQL-----------------------------RGKASPF 362 (498)
T ss_pred chhhhhhhc-ccceeecCC--CCchheeecccCcceeeeehhhh-----------------------------cCCCCcc
Confidence 444444444 466777643 34568999999999999999811 0012234
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc------ceEEEEEC--CCEE
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------RVWDCCLT--DSFI 321 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~------~I~~v~~~--~~~l 321 (1088)
.....|...|.++.|||.+..|+|.+.|..|||||..--... ..+. ....|.. ...-..|. .++|
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~----~~p~---~~I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK----DEPL---GTIPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc----CCcc---ceeeccCcccccccchhheeCCCccEE
Confidence 556689999999999999988999999999999998511000 1111 2223322 12345566 4789
Q ss_pred EEEeCCCcEEEEcCCCc-eeEEEcccCCCCeEEE-EEcCCCC-EEEEEeCCCCEEEEEc
Q 001391 322 ITAGEDCTCRVWGSDGK-QLKMIKEHIGRGIWRC-LYDSLSS-LLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~~~~-~~~~~~~h~~~~V~~l-~~~~dg~-~l~tg~~Dg~I~iwd~ 377 (1088)
++|-.-..|-|+|-+++ .+..+.......|.++ .|+|-+. +++.++..|.|.||.-
T Consensus 436 ~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 99999899999999554 4666655544456654 6899888 5555556788888754
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-18 Score=189.87 Aligned_cols=240 Identities=17% Similarity=0.263 Sum_probs=194.9
Q ss_pred CceEEecCCC-ceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCC
Q 001391 5 DLSEWRLDVG-QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGS 82 (1088)
Q Consensus 5 ~i~iWdl~~g-~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~ 82 (1088)
.+++||.+.. .|...|.++..- .. .+.+++|. +..+-+|.+...-.+..+.+|+. .|.++.|+ +
T Consensus 15 ~Lr~~~~~~~~~hsaav~~lk~~--~s----~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-pIeSl~f~-------~ 80 (825)
T KOG0267|consen 15 KLRVWDTREFVAHSAAVGCLKIR--KS----SRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-PIESLTFD-------T 80 (825)
T ss_pred ccccccchhhhhhhhhhceeeee--cc----ceeeccCCCceeeccccccCCchhheeeccCC-cceeeecC-------c
Confidence 3567776544 377788888875 44 78888887 67888999987777778899887 79999999 5
Q ss_pred CccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 83 VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 83 d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
+. .+|+++. +|+|++||++. .+.+++|.+|...+.+++|+| -+.+.|+|+.|..+++
T Consensus 81 ~E----~LlaagsasgtiK~wDlee---------------Ak~vrtLtgh~~~~~sv~f~P---~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 81 SE----RLLAAGSASGTIKVWDLEE---------------AKIVRTLTGHLLNITSVDFHP---YGEFFASGSTDTDLKI 138 (825)
T ss_pred ch----hhhcccccCCceeeeehhh---------------hhhhhhhhccccCcceeeecc---ceEEecccccccccee
Confidence 43 5555544 89999999994 467889999999999999999 9999999999999999
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
||+....+...+.++.. .+-.++ ++|+|.++++|+.|.+++|||..
T Consensus 139 wD~Rk~Gc~~~~~s~~~-vv~~l~---lsP~Gr~v~~g~ed~tvki~d~~------------------------------ 184 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTR-VVDVLR---LSPDGRWVASGGEDNTVKIWDLT------------------------------ 184 (825)
T ss_pred hhhhccCceeeecCCcc-eeEEEe---ecCCCceeeccCCcceeeeeccc------------------------------
Confidence 99998888888877543 233444 48999999999999999999998
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~ 319 (1088)
.++.+..|++|++.|..+.|+|..-.+++||.|+++++||+++ .+.+. ...+....|.+.+|+ +.
T Consensus 185 ---agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet--------fe~I~--s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 185 ---AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET--------FEVIS--SGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred ---ccccccccccccccccccccCchhhhhccCCCCceeeeeccce--------eEEee--ccCCccCCceeeeecCCce
Confidence 7888899999999999999999999999999999999999998 34443 334446789999998 34
Q ss_pred EEEEEeCC
Q 001391 320 FIITAGED 327 (1088)
Q Consensus 320 ~l~sg~~D 327 (1088)
.+++|.+.
T Consensus 252 ~~~~G~q~ 259 (825)
T KOG0267|consen 252 IVLSGEQI 259 (825)
T ss_pred eeecCchh
Confidence 45555443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=173.94 Aligned_cols=242 Identities=13% Similarity=0.157 Sum_probs=183.8
Q ss_pred cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
.+-..|+|. |+|. .+++++.|+.|++|+....... .+ .+.-+...|.+++.
T Consensus 14 ~G~t~i~~d-------~~ge---fi~tcgsdg~ir~~~~~sd~e~-----------P~---ti~~~g~~v~~ia~----- 64 (933)
T KOG1274|consen 14 GGLTLICYD-------PDGE---FICTCGSDGDIRKWKTNSDEEE-----------PE---TIDISGELVSSIAC----- 64 (933)
T ss_pred CceEEEEEc-------CCCC---EEEEecCCCceEEeecCCcccC-----------Cc---hhhccCceeEEEee-----
Confidence 357889998 7873 5666666999999997754200 11 11126788888887
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCc---eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCC
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~---~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
++.++++|+.+++|.+|.+.+++ .+..+..+.+...+ +.+|.++|.|+.|-.|++-+..
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v-------~g~g~~iaagsdD~~vK~~~~~----------- 126 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAV-------SGSGKMIAAGSDDTAVKLLNLD----------- 126 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEE-------ecCCcEEEeecCceeEEEEecc-----------
Confidence 55689999999999999998765 45666666665544 3679999999999999999988
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
.......+++|+++|.+|.|+|.+.+||+.+-||.|++|++.++....... .+.+.
T Consensus 127 ----------------------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~--~v~k~ 182 (933)
T KOG1274|consen 127 ----------------------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT--GVDKD 182 (933)
T ss_pred ----------------------ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc--cCCcc
Confidence 667788899999999999999999999999999999999999875421110 00000
Q ss_pred eeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.-......+..++|+ +..++..+.|+.|++|+. .......+.. +.. .+..+.|+|.|.|||+++.||.|.|||.
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc-ceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 001113445678898 468888999999999999 4455555543 333 4889999999999999999999999999
Q ss_pred CC
Q 001391 378 QA 379 (1088)
Q Consensus 378 ~~ 379 (1088)
++
T Consensus 262 ~t 263 (933)
T KOG1274|consen 262 DT 263 (933)
T ss_pred cc
Confidence 75
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=168.27 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=195.0
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeC-CcceEEEEecccccccCCCccceeeEEEE--ECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~-~~~V~~i~~s~~~~~~~~d~~~~~~~la~--~gd~~v~iw~l~~~~~~~~ 112 (1088)
.+.++.++..+++||...-+....+..+. ...+..+.|. ... .+++. +||+.+++|.-.... +
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~-------~~n----~lvvas~~gdk~~~~~~K~g~~--~- 69 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ-------RRN----FLVVASMAGDKVMRIKEKDGKT--P- 69 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeecc-------ccc----eEEEeecCCceeEEEecccCCC--C-
Confidence 46777777899999998765544444322 2248888887 332 33333 458999999765321 0
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (1088)
....+..+.+. .-.|++... ...++++||..++|+|||+....+...++.|. ..+..+.+ ...
T Consensus 70 --------~Vp~~~k~~gd--~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~-stvt~v~Y---N~~ 132 (673)
T KOG4378|consen 70 --------EVPRVRKLTGD--NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ-STVTYVDY---NNT 132 (673)
T ss_pred --------ccceeeccccc--hHHHHhhhh---cceeeeccCcCceeeehhhHHHHHhhhccCCc-ceeEEEEe---cCC
Confidence 12334444443 445555555 55799999999999999999776677777776 44555555 456
Q ss_pred CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC-CCCEEEEEEcCCCCE-
Q 001391 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSK- 270 (1088)
Q Consensus 193 ~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~v~~sp~g~~- 270 (1088)
+.+||+++..|.|.|..+. ++.....|... ...|.-+.|+|..++
T Consensus 133 DeyiAsvs~gGdiiih~~~---------------------------------t~~~tt~f~~~sgqsvRll~ys~skr~l 179 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTK---------------------------------TKQKTTTFTIDSGQSVRLLRYSPSKRFL 179 (673)
T ss_pred cceeEEeccCCcEEEEecc---------------------------------cCccccceecCCCCeEEEeeccccccee
Confidence 7899999999999999988 44444444433 345678999998776
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCC-CceeEEEccc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD-GKQLKMIKEH 346 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~-~~~~~~~~~h 346 (1088)
|.+++++|.|.+||+..... .+. ....|.++...++|+ +.+|++.+.|..|.+||.. .+....+...
T Consensus 180 L~~asd~G~VtlwDv~g~sp-------~~~--~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSP-------IFH--ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred eEeeccCCeEEEEeccCCCc-------ccc--hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence 56789999999999987532 222 567899999999998 4789999999999999994 3334444333
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 347 ~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
. |...++|.++|.+|+.|...|.|..||++.
T Consensus 251 ~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 251 H--PLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred C--CcceeeecCCceEEEeecCCceEEEEeccc
Confidence 2 689999999999999999999999999965
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=164.53 Aligned_cols=243 Identities=15% Similarity=0.191 Sum_probs=173.4
Q ss_pred eEEEEEC-CCEEEEEEeccCCCCCCCCCCc------cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 89 FEVALFG-EKRVKLFELNFELSPNSQYQPE------TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 89 ~~la~~g-d~~v~iw~l~~~~~~~~~~~~~------~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
.++|++. +..|.|||+.....-...+.-. .....+.-....+|++.|.++.|+. .-...||+||.|.+|++
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--NFRNVLASGSADKTVKL 270 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc--ccceeEEecCCCceEEE
Confidence 5777766 9999999998432111000000 0001111222457999999999987 13468999999999999
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
||+.++++..++..+. ..+.++.++.. ....|++|+.|+++.+.|++..
T Consensus 271 WD~~~g~p~~s~~~~~-k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~~---------------------------- 319 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHG-KKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRDP---------------------------- 319 (463)
T ss_pred EEcCCCCcceehhhcC-CceeEEEecCC--CceEEEeccccceEEeeeccCc----------------------------
Confidence 9999999998887444 34677888654 4679999999999999999821
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--- 317 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--- 317 (1088)
......-.-.+.|-.++|.|... .++++.+||+|+-+|++... +++ +++..|...|.+++++
T Consensus 320 -----~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------~~v--wt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 320 -----SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------KPV--WTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred -----cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-------Cce--eEEEeccCCcceEEecCCC
Confidence 11111112357789999998664 56778899999999999852 444 3889999999999998
Q ss_pred CCEEEEEeCCCcEEEEcCCCceeEEEcccCC--CCeEEEEEcCCCC-EEEEEeCCCCEEEEEcC
Q 001391 318 DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG--RGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~--~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~ 378 (1088)
+++++|++.|+++++|++.+..-.....|.- ....|.++.|+-. .++.||..+.+++||+.
T Consensus 386 p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 386 PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 7899999999999999994433333333322 1245666677643 67888888899999984
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-16 Score=165.40 Aligned_cols=280 Identities=11% Similarity=0.100 Sum_probs=200.8
Q ss_pred CCCCceEEecCCCc-------ee--eeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCee--EEEEeeeCCcce
Q 001391 2 GKKDLSEWRLDVGQ-------YL--GEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTL--IRPFQVFHGIRL 68 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-------~~--~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~--~~~~~~~~~~~V 68 (1088)
...+++|||..... |. -.+..++|. .. ..++++.. |..+++|. +.|+. +.......+..-
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~--~~----n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ--RR----NFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeecc--cc----ceEEEeecCCceeEEEec-ccCCCCccceeeccccchH
Confidence 34569999987654 11 128888988 54 22444433 57888887 33330 111111122223
Q ss_pred EEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
.|++.. .-. .+++++| .+.|+|||+.. ....+.+++|.+.|++|.++- ..
T Consensus 83 ~Cv~~~-------s~S----~y~~sgG~~~~Vkiwdl~~---------------kl~hr~lkdh~stvt~v~YN~---~D 133 (673)
T KOG4378|consen 83 FCVACA-------SQS----LYEISGGQSGCVKIWDLRA---------------KLIHRFLKDHQSTVTYVDYNN---TD 133 (673)
T ss_pred HHHhhh-------hcc----eeeeccCcCceeeehhhHH---------------HHHhhhccCCcceeEEEEecC---Cc
Confidence 333332 221 6666666 79999999983 345677899999999999998 88
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
.+||+++..|.|.|..+.++.....+..+.+..+.-+.+... ...+|.+++.+|.|.+||+.
T Consensus 134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~---------------- 195 (673)
T KOG4378|consen 134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQ---------------- 195 (673)
T ss_pred ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc--cceeeEeeccCCeEEEEecc----------------
Confidence 999999999999999999998887777666655545555322 23467788999999999998
Q ss_pred CCCCCCCceeEecccccceee-eEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 228 HGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
...+ ..-...|..+..+|+|+|.. ..|++.+.|+.|.+||....+. .. ..
T Consensus 196 -----------------g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--------~~---~l 247 (673)
T KOG4378|consen 196 -----------------GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--------TD---RL 247 (673)
T ss_pred -----------------CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--------cc---ee
Confidence 3333 33456899999999999965 5678999999999999987543 11 12
Q ss_pred ccCcceEEEEEC--CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEE
Q 001391 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~t 365 (1088)
....+...++|. |.+|+.|...|.|..||+ ...++..+..|.. .|++++|-+.. .+++
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP-TVLT 309 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc-eeee
Confidence 223467889998 789999999999999999 4578899999998 69999998764 3443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-15 Score=159.28 Aligned_cols=503 Identities=12% Similarity=0.110 Sum_probs=275.5
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
++...|.|+.++ .+ ...+.++.|..+.+|.-.+........-++.. |....+ +..... ..|+.-+.+++++
T Consensus 12 r~~e~vc~v~w~--~~----eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df-~pt~~h-~~~rs~-~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWS--SN----EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDF-VPTDMH-LGGRSS-GGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeeccc--cc----ceEEEeccCceEEEeecccchhhhhhhCCccc-CCcccc-cccccc-CCCCCcceEEEEc
Confidence 456678899998 55 67777788876666664433322222222221 111111 111111 1111124677888
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.||.+.|.+-. .+..+....|.+.|.+-.|+| ||.-|+|+|.||.|++|.- +|....++.
T Consensus 83 ~DGkf~il~k~----------------~rVE~sv~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWSr-sGMLRStl~ 142 (737)
T KOG1524|consen 83 NDGRFVILNKS----------------ARVERSISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWSR-SGMLRSTVV 142 (737)
T ss_pred CCceEEEeccc----------------chhhhhhhhhhhhhhhcccCC---CCceeeeecCCceEEEEec-cchHHHHHh
Confidence 89999998755 455667789999999999999 9999999999999999985 443332222
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
. ....+|++++-+. ....+++.+ +.+.|=-+. ....+.+.+.
T Consensus 143 Q-~~~~v~c~~W~p~--S~~vl~c~g--~h~~IKpL~---------------------------------~n~k~i~WkA 184 (737)
T KOG1524|consen 143 Q-NEESIRCARWAPN--SNSIVFCQG--GHISIKPLA---------------------------------ANSKIIRWRA 184 (737)
T ss_pred h-cCceeEEEEECCC--CCceEEecC--CeEEEeecc---------------------------------cccceeEEec
Confidence 2 2234677776322 233444433 444444444 3445667789
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEc
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd 334 (1088)
|.+-|.++.|+|....++||++|-..++||-..... +....|..+|++++|.+..++.-+.-.++|+
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-----------f~S~~~ey~ITSva~npd~~~~v~S~nt~R~-- 251 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-----------FTSAAEEYAITSVAFNPEKDYLLWSYNTARF-- 251 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeecccCccc-----------ccCChhccceeeeeeccccceeeeeeeeeee--
Confidence 999999999999999999999999999999876432 4677899999999999544333333345551
Q ss_pred CCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCC-CcccCCccccccCCCcceEEeeeCCCcc-c
Q 001391 335 SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLP-GSLESHPEAKEFNGRTEIFSIKIPNFSE-Q 411 (1088)
Q Consensus 335 ~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 411 (1088)
-+...+ .|..++|++||..+++|...|.+.+=-. +.+.. ..++... .......+ .+... .
T Consensus 252 --------~~p~~G-SifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~------~~r~~I~v--rdV~~~v 314 (737)
T KOG1524|consen 252 --------SSPRVG-SIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATS------KSRKSITV--RDVATGV 314 (737)
T ss_pred --------cCCCcc-ceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEe------eccceEEe--ehhhhhH
Confidence 122334 6999999999999999999997765333 32111 1110000 00000000 00000 0
Q ss_pred eeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEec
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~ 491 (1088)
...++- ...|...... -+.++++|+ .++|.+. .+..+-..+..+.... ...+. .....+++.
T Consensus 315 ~d~LE~-p~rv~k~sL~-Y~hLvvaTs-~qvyiys---~knwntpiiidgre~t-r~lie---------q~ek~fli~-- 376 (737)
T KOG1524|consen 315 QDILEF-PQRVVKFSLG-YGHLVVATS-LQVYIYS---EKNWNTPIIIDGREDT-RNLIE---------QGEKYFLIL-- 376 (737)
T ss_pred HHHhhC-ccceeeeeec-eeEEEEEec-cEEEEEe---cCCccCcEEEeccccc-hhHhh---------hhhhheEEe--
Confidence 011111 1234444322 335555553 3455332 2111101122222111 00000 011122222
Q ss_pred CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEE--ECCCCeEEEEec-CCCCCcccccCCcccc
Q 001391 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT--ADPKGRLKLWQL-CDPFSSVCYESSKTNN 568 (1088)
Q Consensus 492 ~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s--~~~dg~i~vwd~-~~~~~~~~~~~~~~~~ 568 (1088)
..-.|.+|..+..... ....+.. ...++.. -..+.....|+. ......+.+||. +.++.....
T Consensus 377 dgsSi~lytyegR~~~-----np~~Pg~-~~dlL~~-rtlsLandtLaird~ad~kvlhlFd~istgk~qgDg------- 442 (737)
T KOG1524|consen 377 DGSSIWLYTYEGRLHL-----NPRYPGS-QIDLLTW-RTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDG------- 442 (737)
T ss_pred cCcEEEEEEecCceec-----CCCCCCc-ccccccc-eeeecccceEEeecCCCCeeEEeccCCCCCcccCCc-------
Confidence 1235666666532211 0001110 0001000 012333334443 223346677877 444321110
Q ss_pred eeeeeeeccccCceEEEEEee----eCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEE
Q 001391 569 VFLVAEFSSCFGARIMCLDAS----FEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLS 644 (1088)
Q Consensus 569 ~~l~~~~~~~h~~~It~l~~s----pdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~ 644 (1088)
+ ...|...|.-++.. ++++.+|.-+.++.++|=.+.+-. ...++-.++ .-|+.++
T Consensus 443 ----k--~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfg-------kee~I~KiG--------TmVhtLa 501 (737)
T KOG1524|consen 443 ----K--SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFG-------KEEEIYKIG--------TMVHTLA 501 (737)
T ss_pred ----c--ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcC-------chhhhhhhh--------hhhhhhh
Confidence 0 12455566666654 678899999999999998776522 222333343 3477888
Q ss_pred EEeccCCceEEEEecCCCeEEEEEeec
Q 001391 645 VAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 645 ~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
|. +..-++.+=.|+++.+|-++.
T Consensus 502 wn----dttNiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 502 WN----DTTNILCGLQDTCFSVWYYPN 524 (737)
T ss_pred hc----cccceeeeeccceEEEEEcCC
Confidence 88 235688899999999998765
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-15 Score=172.27 Aligned_cols=253 Identities=12% Similarity=0.101 Sum_probs=172.5
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~v 332 (1088)
.+|+..-+.|+|.|+|.+|++|+.||.|++|+...... .++ ...-+...|.+++....+|++|+++++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e----~P~-----ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE----EPE-----TIDISGELVSSIACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc----CCc-----hhhccCceeEEEeecccceEEeeccceEEE
Confidence 46888899999999999999999999999999876411 011 222277889999988889999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccc
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1088)
|.. +++.-..+....- ++..++++.+|.+++.||.|-.|++-+.... .+
T Consensus 81 y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-----------------------------s~ 130 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-----------------------------SQ 130 (933)
T ss_pred eeCCCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEecccc-----------------------------ch
Confidence 999 5544434444445 7999999999999999999999999887421 01
Q ss_pred eeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEec
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~ 491 (1088)
...+.+|.++|.++.|.|++. ++|+.+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~-----------------------------------------------------fLAvss 157 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGN-----------------------------------------------------FLAVSS 157 (933)
T ss_pred heeecccCCceeeeeEcCCCC-----------------------------------------------------EEEEEe
Confidence 122334445566666665554 444444
Q ss_pred CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceee
Q 001391 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL 571 (1088)
Q Consensus 492 ~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l 571 (1088)
.||.+++|++.++.+...+.-...........+ ....+++|+|..|+....|+.|++|+.........+
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i-~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L---------- 226 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI-CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL---------- 226 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccce-eeeeeecCCCCeEEeeccCCeEEEEccCCceeheee----------
Confidence 444444444444332211110000000000111 112468999888888889999999998865421111
Q ss_pred eeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 572 VAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 572 ~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
. ..-+...+.++.|||.|+|||+++.||.|.|||+++
T Consensus 227 r---~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 R---DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred c---ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 1 112334499999999999999999999999999985
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=153.67 Aligned_cols=301 Identities=14% Similarity=0.150 Sum_probs=202.1
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
++..++.. .. -.|+.|++ .|.+||+|..||.|.|||+.+...-..+..|... +.++++ +++|..|++++.|
T Consensus 16 el~~tld~-~~-a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p-i~sl~W---S~dgr~LltsS~D 86 (405)
T KOG1273|consen 16 ELTHTLDN-PL-AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP-ITSLCW---SRDGRKLLTSSRD 86 (405)
T ss_pred hhceeccC-Cc-cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccc-eeEEEe---cCCCCEeeeecCC
Confidence 44444432 22 78999999 9999999999999999999998866666655543 456665 7899999999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSAR 281 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~ 281 (1088)
..|.+||+. .+.++++++ ...+|+.+.|+|... ..+.+-.+..-.
T Consensus 87 ~si~lwDl~---------------------------------~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 87 WSIKLWDLL---------------------------------KGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred ceeEEEecc---------------------------------CCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcE
Confidence 999999998 666777665 568899999999553 333333344455
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcc-eEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEc
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~-I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~ 357 (1088)
+-++..+.. ..+. ..-.+.... -.+..|. |+++++|...|.+.+++. +-+++..++-.....|.++.++
T Consensus 133 vi~~s~~~h------~~Lp-~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s 205 (405)
T KOG1273|consen 133 VIDFSDPKH------SVLP-KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS 205 (405)
T ss_pred EEEecCCce------eecc-CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence 555554321 1111 011111111 1222344 899999999999999999 6677777766553369999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
..|+.|+.-+.|+.||.|+++.-...... .+ +.....+..+ ...-.-++++|+.+|.+++++
T Consensus 206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~-----------~e------~e~~~K~qDv-VNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEISDIDDEGRD-----------GE------VEPEHKLQDV-VNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred ccCcEEEEecCCceEEEEehhhhcccCcc-----------CC------cChhHHHHHH-HhhhhhhheeecCCccEEEec
Confidence 99999999999999999998521100000 00 0000000000 001123678899999888887
Q ss_pred cCCe--EEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 438 NHGY--LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 438 ~~g~--i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
+... +| +|....+...+++.|..+.....+++++-. ..+++- ..|.+++|....
T Consensus 268 s~~aHaLY---IWE~~~GsLVKILhG~kgE~l~DV~whp~r--------p~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 268 SARAHALY---IWEKSIGSLVKILHGTKGEELLDVNWHPVR--------PIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccceeEE---EEecCCcceeeeecCCchhheeecccccce--------eeeeec-cCCceEEEEeec
Confidence 6433 66 677777777788888887777666665543 344444 789999998753
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-16 Score=159.73 Aligned_cols=214 Identities=19% Similarity=0.286 Sum_probs=160.3
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC----------------ceEEEeccCCceeEEEEe
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS----------------SIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~----------------~~~~~~~~~~~~~~~s~~ 185 (1088)
.+......+|.+.|+-+...+.. +..+.|+=+..|.|+||++... +.+.++.++. ..-|.++
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~Ld 218 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLD 218 (440)
T ss_pred ccccccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-ccceeee
Confidence 34445556788888888888721 3346667788999999998532 2234444333 3455666
Q ss_pred eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc
Q 001391 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s 265 (1088)
+.+ ...-.+++|.--+.|++|...++. |. .--..|.+|+..|-.++||
T Consensus 219 WSp--~~~g~LlsGDc~~~I~lw~~~~g~-------------------------W~-----vd~~Pf~gH~~SVEDLqWS 266 (440)
T KOG0302|consen 219 WSP--IKTGRLLSGDCVKGIHLWEPSTGS-------------------------WK-----VDQRPFTGHTKSVEDLQWS 266 (440)
T ss_pred ccc--ccccccccCccccceEeeeeccCc-------------------------ee-----ecCccccccccchhhhccC
Confidence 522 123357888888999999987211 10 1122356799999999999
Q ss_pred CCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC----CCc
Q 001391 266 SCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DGK 338 (1088)
Q Consensus 266 p~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~----~~~ 338 (1088)
|.. ..|+|||-|++|+|||++.+.. ...+ ....|...|..+.|+ -.+|++|+.||+++|||+ .++
T Consensus 267 ptE~~vfaScS~DgsIrIWDiRs~~~-----~~~~---~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 267 PTEDGVFASCSCDGSIRIWDIRSGPK-----KAAV---STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ 338 (440)
T ss_pred CccCceEEeeecCceEEEEEecCCCc-----ccee---EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC
Confidence 965 5789999999999999998743 2233 458899999999998 358999999999999999 468
Q ss_pred eeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcC
Q 001391 339 QLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 339 ~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~ 378 (1088)
++..|+.|.. +|+++.|+|.. ..|+++|.|..|.+||+.
T Consensus 339 pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 339 PVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred cceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 8999999998 89999999854 578889999999999994
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=174.19 Aligned_cols=310 Identities=16% Similarity=0.216 Sum_probs=215.5
Q ss_pred CceEEecCCCc-eeeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEee--eCCcceEEEEeccccccc
Q 001391 5 DLSEWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQV--FHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 5 ~i~iWdl~~g~-~~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~--~~~~~V~~i~~s~~~~~~ 80 (1088)
.|..||..... -..+-..+.|+ |- ...++++.| ..|+|||.+.++++..|.. +...+|..+.+--.
T Consensus 1051 ~i~~W~~~~~~~n~~~pk~~~~h--pf----~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe---- 1120 (1387)
T KOG1517|consen 1051 PIGNWDQKFMTGNNQPPKTLKFH--PF----EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE---- 1120 (1387)
T ss_pred cccchHHHHHhcCCCCCceeeec--CC----CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc----
Confidence 34566633222 12345677888 76 677888775 8999999999999887764 23457888887521
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeee-------ccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-------LPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-------l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
-|. ..+++++.||.||||+--.... . +.+++.- +.+-.+.=.-++|.. ...+|+++
T Consensus 1121 -~D~---aLlLtas~dGvIRIwk~y~~~~--~--------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ---~~G~Ll~t 1183 (1387)
T KOG1517|consen 1121 -QDD---ALLLTASSDGVIRIWKDYADKW--K--------KPELVTAWSSLSDQLPGARGTGLVVDWQQ---QSGHLLVT 1183 (1387)
T ss_pred -cch---hheeeeccCceEEEeccccccc--C--------CceeEEeeccccccCccCCCCCeeeehhh---hCCeEEec
Confidence 222 3777778899999998543210 0 1222221 112222223455655 55566677
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
|.-..|+|||.....+...+.....+.+.++.. +...|.+|++|..||.|++||.+.
T Consensus 1184 Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~--------------------- 1240 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA--DLVHGNIIAAGFADGSVRVYDRRM--------------------- 1240 (1387)
T ss_pred CCeeEEEEEecccceeEeecccCCCccceeecc--cccCCceEEEeecCCceEEeeccc---------------------
Confidence 668899999999888888877666666666543 345689999999999999999981
Q ss_pred CceeEecccccceeeeEEEeCCCCC--EEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGS--IFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~--V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
......+...+.|... |..+.+-+.|- .|++|+.||.|++||++.... ...+.........+.
T Consensus 1241 ---------a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-----e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1241 ---------APPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-----ETFLTIVAHWEYGSA 1306 (1387)
T ss_pred ---------CCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-----cccceeeeccccCcc
Confidence 1133456677889888 99999998764 599999999999999998421 111110011111234
Q ss_pred eEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCC------CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 311 VWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 311 I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~------~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+++..+ ...+++|+. +.|+||++.|+.+..++.+.+ ..+.+++|+|..-+|+.|..|.+|.||....
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 7888887 578899888 999999999888776654321 3688999999999999999999999998743
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-16 Score=162.80 Aligned_cols=240 Identities=14% Similarity=0.183 Sum_probs=167.8
Q ss_pred EEEEeccCC-CCCCCCEEEEEe-CCeEEEEECCC----------CeeEE-----------EEeeeCCcceEEEEeccccc
Q 001391 22 ALCFVHLPS-HLSSLPFLLAGS-GSQVLLYDLEA----------GTLIR-----------PFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 22 ~v~fs~~pd-~~~~~~~laag~-d~~I~vwd~~t----------g~~~~-----------~~~~~~~~~V~~i~~s~~~~ 78 (1088)
|+++.+-|. ..+.+.|+|.|+ ++.|.|||+.= |.... .-.+|.. .|..+.|.
T Consensus 178 C~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n---- 252 (463)
T KOG0270|consen 178 CIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWN---- 252 (463)
T ss_pred hhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhc----
Confidence 555542122 335578999999 89999999742 10000 0112333 45566665
Q ss_pred ccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC
Q 001391 79 TEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg 157 (1088)
..- +.+||+++ |.+|++||+.+ .++..++..|.+.|.+++|+| .....|++|+.|+
T Consensus 253 ---~~~---~nVLaSgsaD~TV~lWD~~~---------------g~p~~s~~~~~k~Vq~l~wh~--~~p~~LLsGs~D~ 309 (463)
T KOG0270|consen 253 ---RNF---RNVLASGSADKTVKLWDVDT---------------GKPKSSITHHGKKVQTLEWHP--YEPSVLLSGSYDG 309 (463)
T ss_pred ---ccc---ceeEEecCCCceEEEEEcCC---------------CCcceehhhcCCceeEEEecC--CCceEEEeccccc
Confidence 222 25666665 99999999996 456777888999999999999 3567999999999
Q ss_pred cEEEEEcCCC---ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 158 SIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 158 ~V~iWd~~~~---~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
+|.+.|.+.. ....++.+....+.|. ......+++++.||+++-+|++
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~------~~se~~f~~~tddG~v~~~D~R----------------------- 360 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWD------PHSENSFFVSTDDGTVYYFDIR----------------------- 360 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEec------CCCceeEEEecCCceEEeeecC-----------------------
Confidence 9999999842 2223333333333332 2335678889999999999998
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC---cc
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---AR 310 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---~~ 310 (1088)
..++++..++.|.+.|.+|.+++.- .+++|++.|+.|++|++..... . ....|. ++
T Consensus 361 ---------~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~------~-----~v~~~~~~~~r 420 (463)
T KOG0270|consen 361 ---------NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP------K-----SVKEHSFKLGR 420 (463)
T ss_pred ---------CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC------c-----ccccccccccc
Confidence 2458899999999999999998865 5688899999999999987533 1 122222 22
Q ss_pred eEEEEEC---CCEEEEEeCCCcEEEEcC-CCc
Q 001391 311 VWDCCLT---DSFIITAGEDCTCRVWGS-DGK 338 (1088)
Q Consensus 311 I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~ 338 (1088)
..|.++. +..++.|+..+.++|||+ +..
T Consensus 421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 3444444 468999999999999998 443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-15 Score=161.06 Aligned_cols=237 Identities=13% Similarity=0.116 Sum_probs=160.3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
.+-..+.||++.|.++...| .|.+||+|+.||+|+||.+.++.++.+..-.. .+.+++|.+. ++-.+||++..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~-~~~~vLAvA~~- 463 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPL-SDLCVLAVAVG- 463 (733)
T ss_pred eeeeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCC-CCceeEEEEec-
Confidence 34456789999999999999 99999999999999999999999998876433 4555555332 23334444433
Q ss_pred CeEEEEEeccCccccCCCCCCC-ccCCCCCCCCceeEeccccc---ceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEG-NHAHGSSSDFKCFKLQDQQH---TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD- 277 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D- 277 (1088)
..+.|-+...+........... .+.......+..+..|.... ...-+.....|...|..|.|+..|.+|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 3366655443311111000000 01101111334556665431 122245556799999999999999999997654
Q ss_pred --CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeE
Q 001391 278 --RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 278 --g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~ 352 (1088)
..|.|.++...+. .. .+..-.+.|.++.|++ .+++.++ ...||+||+ ....++.+..... .|.
T Consensus 544 ~~~~VliHQLSK~~s-----Q~-----PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k-wiS 611 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKS-----QS-----PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK-WIS 611 (733)
T ss_pred CcceEEEEecccccc-----cC-----chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe-eee
Confidence 6789999987643 11 3334456688999994 4555554 457999999 5555566555544 699
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 353 RCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+++.+|.|..|+.|+.|+.++.+|++
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcc
Confidence 99999999999999999999999984
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=150.70 Aligned_cols=278 Identities=21% Similarity=0.297 Sum_probs=195.8
Q ss_pred CEEEEEe-----CCeEEEEECCC--CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-C---C----CEEE
Q 001391 36 PFLLAGS-----GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G---E----KRVK 100 (1088)
Q Consensus 36 ~~laag~-----d~~I~vwd~~t--g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g---d----~~v~ 100 (1088)
.-+++|+ +.+|.+.++.. +++......|+...|+.++-+|. +. ++|++. . | -.+.
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~------d~----~ilaT~yn~~s~s~vl~~aa 96 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF------DQ----RILATVYNDTSDSGVLTGAA 96 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCC------CC----ceEEEEEeccCCCcceeeEE
Confidence 3445554 36777777654 34444433345457999999953 22 555543 2 2 3589
Q ss_pred EEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-EEEeccCC-
Q 001391 101 LFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE- 177 (1088)
Q Consensus 101 iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-~~~~~~~~- 177 (1088)
||.+..+..+ +.++ .++++..+. .+-+.|.|+.|.| ++..|++-. |+.|.+|++..+.. +..+..+.
T Consensus 97 iw~ipe~~~~-S~~~-----tlE~v~~Ldteavg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s 166 (370)
T KOG1007|consen 97 IWQIPEPLGQ-SNSS-----TLECVASLDTEAVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES 166 (370)
T ss_pred EEecccccCc-cccc-----hhhHhhcCCHHHhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeeccccc
Confidence 9999854311 2222 367777776 5667999999999 888888765 99999999987765 44444222
Q ss_pred ---ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-Ee
Q 001391 178 ---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LV 253 (1088)
Q Consensus 178 ---~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 253 (1088)
....++-++ ..-.++..+++. .|+++..||++ +...... -.
T Consensus 167 ~e~~~~ftsg~W-spHHdgnqv~tt-~d~tl~~~D~R---------------------------------T~~~~~sI~d 211 (370)
T KOG1007|consen 167 AEMRHSFTSGAW-SPHHDGNQVATT-SDSTLQFWDLR---------------------------------TMKKNNSIED 211 (370)
T ss_pred ccccceeccccc-CCCCccceEEEe-CCCcEEEEEcc---------------------------------chhhhcchhh
Confidence 112233332 223467777664 58999999998 2322222 24
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCc
Q 001391 254 GHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCT 329 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~ 329 (1088)
.|...|..+.|+|+.+ +|+||++||.|||||.+..+ .++. .+.+|.-.||++.|+ +++|++|+.|..
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------~pv~--el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------FPVQ--ELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-------cccc--ccCCCceEEEEEEecCccceEEEecCCCce
Confidence 7888999999999876 57899999999999998853 2443 889999999999998 689999999999
Q ss_pred EEEEcCC---C---------------------------ceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcC
Q 001391 330 CRVWGSD---G---------------------------KQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 330 i~vWd~~---~---------------------------~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+|... . ..+.++..|.. .|++++|+.-. -.+++-+.||.+.|=.+.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9999861 0 13446677887 79999997644 467889999999886653
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-15 Score=158.18 Aligned_cols=266 Identities=18% Similarity=0.188 Sum_probs=189.0
Q ss_pred EECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeee
Q 001391 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1088)
Q Consensus 49 wd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (1088)
+|+.+-.....++.+.+ +|++++|+|. .+- .++++++ .|+|-+||+..... ...-+..
T Consensus 171 l~l~~~~~~~v~kv~~~-Rit~l~fHPt-----~~~----~lva~GdK~G~VG~Wn~~~~~~-----------d~d~v~~ 229 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDR-RITSLAFHPT-----ENR----KLVAVGDKGGQVGLWNFGTQEK-----------DKDGVYL 229 (498)
T ss_pred cccccceecceeEeccc-ceEEEEeccc-----Ccc----eEEEEccCCCcEEEEecCCCCC-----------ccCceEE
Confidence 44555555666677666 8999999964 221 3444444 59999999963221 1234556
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce--EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I 205 (1088)
+..|...|.++.|+|. +-..+++.+.||+|++-|++.... +..+. ......+++.+ +.+...++.|+.-|..
T Consensus 230 f~~hs~~Vs~l~F~P~--n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~---~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPA--NTSQIYSSSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDF---SAESRSVLFGDNVGNF 303 (498)
T ss_pred eccCCccccceEecCC--ChhheeeeccCceeeeeeecchhhHHHhhcC-ccceeeeeccc---cCCCccEEEeecccce
Confidence 6789999999999993 445788899999999999987643 23322 23334445554 4556677788888899
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEE
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWE 284 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd 284 (1088)
.+||.++ .+.....+.-|+..|.+|+++|.. .+++|+|.|++++|||
T Consensus 304 ~~iD~R~--------------------------------~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 304 NVIDLRT--------------------------------DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred EEEEeec--------------------------------CCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence 9999982 233344556788899999999966 5689999999999999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC-----CceeEEEcccCC---CC--eE
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-----GKQLKMIKEHIG---RG--IW 352 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-----~~~~~~~~~h~~---~~--V~ 352 (1088)
++.-.... .++ .....|...|.++.|+ +..|++-+.|..|||||.. -.++.++. |.. +. ..
T Consensus 352 ~R~l~~K~----sp~--lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~f 424 (498)
T KOG4328|consen 352 LRQLRGKA----SPF--LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPF 424 (498)
T ss_pred hhhhcCCC----Ccc--eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccch
Confidence 98754311 112 2667899999999999 4569999999999999972 12233332 221 12 34
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
...|.|+..+++.|-.-..|-|+|-+++
T Consensus 425 KA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 425 KAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred hheeCCCccEEEEeccCcceeEEcCCCC
Confidence 5679999999999999999999988653
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=155.95 Aligned_cols=285 Identities=14% Similarity=0.175 Sum_probs=196.4
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
..+|++. .|.|++||..+|+.+..|.++.. .+.++.|... ..|+ .++.++.||+|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-~~N~vrf~~~---ds~h-----~v~s~ssDG~Vr~wD~Rs~~------ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-TTNGVRFISC---DSPH-----GVISCSSDGTVRLWDIRSQA------ 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-cccceEEecC---CCCC-----eeEEeccCCeEEEEEeecch------
Confidence 4566655 79999999999999999999877 5899999731 1243 67888889999999999654
Q ss_pred CCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEE----cCCcEEEEEcCCCce-EEEeccCCceeEEEEeeec
Q 001391 115 QPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGC----SDNSIRVWDISNSSI-ILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs----~Dg~V~iWd~~~~~~-~~~~~~~~~~~~~s~~~~~ 188 (1088)
........+|+ ....|++.+- .++.+++|. .|..|.+||++..+. +..+...+..-+.+++|++
T Consensus 106 -------e~a~~~~~~~~~~~f~~ld~nc---k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 106 -------ESARISWTQQSGTPFICLDLNC---KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred -------hhhheeccCCCCCcceEeeccC---cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 23344455565 5667777766 777888875 377899999998776 6666655556688899986
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
. +.++|++|+.||-|.+||.... .....+...-.|...|.++.|..++
T Consensus 176 ~--~pnlLlSGSvDGLvnlfD~~~d------------------------------~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 176 S--DPNLLLSGSVDGLVNLFDTKKD------------------------------NEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred C--CCCeEEeecccceEEeeecCCC------------------------------cchhhHHHhhcccceeeeeeeecCC
Confidence 5 4579999999999999999811 1223333444688899999999877
Q ss_pred -CEEEEEECCCcEEEEEcCCCcccCCCCceeeec---eeeeccCcceEEEEEC-CCEEEEEeC-CCcEEEEcC----C--
Q 001391 269 -SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT-DSFIITAGE-DCTCRVWGS----D-- 336 (1088)
Q Consensus 269 -~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~---~~~~~h~~~I~~v~~~-~~~l~sg~~-Dg~i~vWd~----~-- 336 (1088)
+.+.+-+...+..+|+++.+..........+.. .....-..-|.+..-. ....+.++. -++..++-+ .
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence 568888899999999999875411000000000 0000000111111111 244555544 455555544 1
Q ss_pred -CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 337 -GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 337 -~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.+.+..+.+++..-|.++.|...+..+.|||.||.+++|..
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 34566677755557889999988999999999999999985
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-14 Score=150.26 Aligned_cols=349 Identities=16% Similarity=0.163 Sum_probs=214.2
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
....++++.+...+. ..+++|+.|..|++|.+...+..+. ..+...+..+..|.
T Consensus 12 ~~~pv~s~dfq~n~~--~~laT~G~D~~iriW~v~r~~~~~~------------------------~~~V~y~s~Ls~H~ 65 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSL--NKLATAGGDKDIRIWKVNRSEPGGG------------------------DMKVEYLSSLSRHT 65 (434)
T ss_pred CCCceEEEEeccCcc--cceecccCccceeeeeeeecCCCCC------------------------ceeEEEeecccCCc
Confidence 444577887765432 3999999999999999883221110 01345667788999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc------CCCC-ceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDS-IEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~------~~~~-~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
..|+.+.|+|+|..|+||+++|.|.+|....-+.. .... ...+. ..+.+|...|..++|+ +.++++++.|
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~-k~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK-KVLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE-EEecccccchhhhhccCCCceeeeeecc
Confidence 99999999999999999999999999988731110 0000 12233 3788999999999998 6899999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeC
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIP 406 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1088)
.++++||+ .|+.+..+..|.. -+..++|.|-++++++-+.|...+.+++....+...-++. .+......
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~---------~m~~~~~~ 214 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD---------IMPAKAFN 214 (434)
T ss_pred ceEEEEEeccceeEeecccccc-ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee---------EeeecccC
Confidence 99999999 8999999999998 5999999999999999999997777776432111000000 00000000
Q ss_pred CCcc-ceeecc--CCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCC
Q 001391 407 NFSE-QIRLTD--SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCG 482 (1088)
Q Consensus 407 ~~~~-~~~~~~--~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~ 482 (1088)
+..+ ....+. .-....+.++|+|+|.+++.- +|.+- .-......-..+..+. ...++..+- ++
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP-ag~~~---~g~~~~~n~tYvfsrk~l~rP~~~lp---------~~ 281 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP-AGLFK---VGGGVFRNTSYVFSRKDLKRPAARLP---------SP 281 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCCcEEEcc-cceee---eCCceeeceeEeeccccccCceeecC---------CC
Confidence 0011 111111 112356888999998877754 33221 1110001111111111 122332221 22
Q ss_pred CCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCccccc
Q 001391 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYE 562 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~ 562 (1088)
....+++... -..|.+..-...+ . .++.--+.+++-.....+++||.+...
T Consensus 282 ~k~~lavr~~---pVy~elrp~~~~~---------------~-----~~~lpyrlvfaiAt~~svyvydtq~~~------ 332 (434)
T KOG1009|consen 282 KKPALAVRFS---PVYYELRPLSSEK---------------F-----LFVLPYRLVFAIATKNSVYVYDTQTLE------ 332 (434)
T ss_pred CcceEEEEee---eeEEEeccccccc---------------c-----ccccccceEEEEeecceEEEecccccc------
Confidence 3345555432 2233333211000 0 011122333333345679999987432
Q ss_pred CCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 563 SSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 563 ~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
.+-++.. -|-..||.++|++||.+|+..|.||..-+-.++..
T Consensus 333 -----P~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 333 -----PLAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred -----ceEEEee---eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 1222222 57888999999999999999999999888777654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=184.51 Aligned_cols=292 Identities=16% Similarity=0.314 Sum_probs=210.7
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECC--CC----eeEEEEeeeCCcceEEEEeccccccc
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLE--AG----TLIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~--tg----~~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
+.-.-++++ |+ + -.++|+|. +.++.||.+. +. +.+..+.. ..+-+.++|.+.
T Consensus 7 ~Rta~~awS--p~--~-~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~~~---- 75 (1049)
T KOG0307|consen 7 SRTATFAWS--PA--S-PPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWGSY---- 75 (1049)
T ss_pred cccceEEec--CC--C-chhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeeccc----
Confidence 344467888 88 2 33777653 2355666543 32 34555554 346799999832
Q ss_pred CCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
+...+.+++.+. ||.|.+||...... + .....+.+...|++.|..+.|++. .+++||+|+.||.|
T Consensus 76 ---g~~~~GlIaGG~edG~I~ly~p~~~~~-~--------~~~~~la~~~~h~G~V~gLDfN~~--q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 76 ---GSHSHGLIAGGLEDGNIVLYDPASIIA-N--------ASEEVLATKSKHTGPVLGLDFNPF--QGNLLASGADDGEI 141 (1049)
T ss_pred ---CCCccceeeccccCCceEEecchhhcc-C--------cchHHHhhhcccCCceeeeecccc--CCceeeccCCCCcE
Confidence 221124666665 89999999875210 1 125678889999999999999992 44599999999999
Q ss_pred EEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 160 RVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
.|||+...+.-.+.... ....+.++++ +......|++++.+|.+.|||++
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr--------------------------- 192 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLR--------------------------- 192 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceecccc---------------------------
Confidence 99999876554443211 1222333333 23345678999999999999999
Q ss_pred ecccccceeeeEEEeCCCC--CEEEEEEcCCC-CEEEEEECC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 239 LQDQQHTAVNLFRLVGHEG--SIFRIEWSSCG-SKLVSVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~--~V~~v~~sp~g-~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
..+++..+..|.+ .+..++|+|+. ..++++++| -.|.+||++... ..++ ++.+|...|.
T Consensus 193 ------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-------sP~k--~~~~H~~Gil 257 (1049)
T KOG0307|consen 193 ------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-------SPLK--ILEGHQRGIL 257 (1049)
T ss_pred ------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-------Cchh--hhccccccee
Confidence 4556666665544 47789999987 456777665 368999988742 2343 7789999999
Q ss_pred EEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCC
Q 001391 313 DCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 313 ~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~ 379 (1088)
++.|. +.+++|++.|+.|.+|+. +++.+..+..... .++.+.|.|... +++.++.||.|.|+.+.+
T Consensus 258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 99998 479999999999999999 8899999987555 699999998665 889999999999999954
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-15 Score=147.51 Aligned_cols=270 Identities=13% Similarity=0.168 Sum_probs=195.1
Q ss_pred CCCceEEecCCCc----------eeeeeEEEEEeccCCCCCCCCEEEEEeC--------CeEEEEECCCC---------e
Q 001391 3 KKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGSG--------SQVLLYDLEAG---------T 55 (1088)
Q Consensus 3 d~~i~iWdl~~g~----------~~~~V~~v~fs~~pd~~~~~~~laag~d--------~~I~vwd~~tg---------~ 55 (1088)
|+-|.+-++..+. +.|.|..++-+ |. ..++|+++.. -.+-||.+... +
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~--P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS--PF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcC--CC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 4556666665543 67899999999 86 3567777653 25789998532 3
Q ss_pred eEEEEe-eeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 56 LIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 56 ~~~~~~-~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
++..+. .+.+ +|.++.|. |++ ..+++-.|+.|.+|++...... .+ .-+...-.+|...
T Consensus 114 ~v~~Ldteavg-~i~cvew~-------Pns----~klasm~dn~i~l~~l~ess~~-va--------ev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 114 CVASLDTEAVG-KINCVEWE-------PNS----DKLASMDDNNIVLWSLDESSKI-VA--------EVLSSESAEMRHS 172 (370)
T ss_pred HhhcCCHHHhC-ceeeEEEc-------CCC----CeeEEeccCceEEEEcccCcch-he--------eecccccccccce
Confidence 344444 2334 79999999 776 7888888999999999864310 00 0011111236778
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccC
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.++-+|+|. .++..+++.+ |++++.||+++..+...+....+..+..+.| +|+. ..|++++.||.|++||.+
T Consensus 173 ftsg~WspH-Hdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDf---Npnkq~~lvt~gDdgyvriWD~R-- 245 (370)
T KOG1007|consen 173 FTSGAWSPH-HDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDF---NPNKQHILVTCGDDGYVRIWDTR-- 245 (370)
T ss_pred ecccccCCC-CccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccC---CCCceEEEEEcCCCccEEEEecc--
Confidence 899999983 2777887764 8999999999988888887777777777776 4444 568899999999999998
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCccc-
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWK- 291 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~- 291 (1088)
.+..+++.+.+|..+|.+|.|+|.- ++++|++.|..|.+|....-...
T Consensus 246 ------------------------------~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 246 ------------------------------KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred ------------------------------CCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 2567899999999999999999964 67889999999999987543211
Q ss_pred ------------CCCCceeeec------eeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC
Q 001391 292 ------------DSDSIEEVGS------SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 292 ------------~~~~~~~i~~------~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~ 335 (1088)
.....+..++ .++..|...|.+++|+ |-.|++-+.||.+.|=.+
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0000111110 2667899999999998 568899999999988665
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-15 Score=152.08 Aligned_cols=286 Identities=15% Similarity=0.192 Sum_probs=184.8
Q ss_pred cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC--CCCEE
Q 001391 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CGSKL 271 (1088)
Q Consensus 194 ~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp--~g~~l 271 (1088)
..+|++-..|.|++||.. ++..+..+++|...+..+.|.. ....+
T Consensus 41 ~~vav~lSngsv~lyd~~---------------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v 87 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG---------------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGV 87 (376)
T ss_pred eeEEEEecCCeEEEEecc---------------------------------chhhhheecCCCCcccceEEecCCCCCee
Confidence 578889999999999998 7888999999999999999987 45779
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC-cceEEEEEC--CCEEEEEe----CCCcEEEEcC-C-CceeEE
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT--DSFIITAG----EDCTCRVWGS-D-GKQLKM 342 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~-~~I~~v~~~--~~~l~sg~----~Dg~i~vWd~-~-~~~~~~ 342 (1088)
.+|+.||+||+||++.... ...+...+++ .+..+++.. ++.+++|. .|..+.+||. . .+++..
T Consensus 88 ~s~ssDG~Vr~wD~Rs~~e--------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 88 ISCSSDGTVRLWDIRSQAE--------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred EEeccCCeEEEEEeecchh--------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence 9999999999999998643 2112344444 455666664 56666665 3667999999 3 343555
Q ss_pred E-cccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCC
Q 001391 343 I-KEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (1088)
Q Consensus 343 ~-~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1088)
+ ..|.. -|+++.|+|+. ++|++|+.||-|.++|++.. +.+..+...-.+..
T Consensus 160 ~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d--------------------------~EeDaL~~viN~~s 212 (376)
T KOG1188|consen 160 LNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD--------------------------NEEDALLHVINHGS 212 (376)
T ss_pred hhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC--------------------------cchhhHHHhhcccc
Confidence 4 56777 49999999964 69999999999999999642 11111111112334
Q ss_pred ceEEEEeccCC--eEEEEecCCeEEEEEeccCCcceeEEeeeec--C----CcceEEEecCCCCCCCcCCCCCeEEEecC
Q 001391 421 YVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVS--E----GMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (1088)
Q Consensus 421 ~V~~l~~s~~~--~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~--~----~~~i~~l~~~~~~~~~s~~~~~~la~g~~ 492 (1088)
.|.++.|..++ ++++.|..+.+..|++.+.....|....... . ..--+.++. ..+.+.+.+++++.
T Consensus 213 SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~------~~~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 213 SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE------HSPGDKDTCALAGT 286 (376)
T ss_pred eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec------ccCCCcceEEEecc
Confidence 68999999988 8899998888887777665443332211000 0 001111111 12345566666655
Q ss_pred -CCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 493 -KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 493 -dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
.++..++-+..........-.......+..-++.. ++...+.+++||+.||.+.+|..++.
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i--~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI--LFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred ccCceeEEEeeecccccccCccccccCCcHHHHHHH--hhhcccceeeccCCCceEEEEecCCc
Confidence 66777776643111111111111222222223332 24456789999999999999996543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-12 Score=146.82 Aligned_cols=370 Identities=19% Similarity=0.305 Sum_probs=249.6
Q ss_pred eccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-eEEEeccCCceeEEEEeeecCCCCCc-EEEE-EecCC
Q 001391 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEAL-RIAS-GTIYN 203 (1088)
Q Consensus 127 ~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~s-g~~dg 203 (1088)
....|...|.++.+.+ .+..++.++.|+.+.+|+..... ....+.......+...... .+++. .++. +..|+
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE--CCCcceEEeccCCCCc
Confidence 4567899999999999 99999999999999999998886 5555554322122223221 23444 4444 44599
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc-eeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~ 281 (1088)
.+.+|+.. . ......+..|...|..++|+|++..+++++. |+.++
T Consensus 135 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 135 TVKLWDLS---------------------------------TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred cEEEEEec---------------------------------CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 99999998 4 5677788999999999999999999888886 99999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC-CCceeE-EEcccCCCCeEEEEE
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-DGKQLK-MIKEHIGRGIWRCLY 356 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~-~~~~~~-~~~~h~~~~V~~l~~ 356 (1088)
+|++... ..+. .+.+|...|.+++|. +. .+++++.|+.+++||. .+..+. .+..|.. .. ...|
T Consensus 182 ~~~~~~~--------~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~ 249 (466)
T COG2319 182 LWDLRTG--------KPLS--TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSF 249 (466)
T ss_pred EEEcCCC--------ceEE--eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeE
Confidence 9999873 2332 666799999999998 33 5555699999999988 567777 6888877 33 3379
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEE
Q 001391 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYI 435 (1088)
Q Consensus 357 ~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~ 435 (1088)
++++.++++++.|+.+++|+...... .+. ....|...+.++.|.|++ .+++
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~~------------~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSS----------------LLR------------TLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCc----------------EEE------------EEecCCccEEEEEECCCCCEEEE
Confidence 99998999999999999999954211 000 012345678899999955 4444
Q ss_pred EecCCeEEEEEeccCCcceeEEeee-ecCCcceEEEecCCCCCCCcCCCCCeEEEe-cCCCCEEEEEEcCCCcCcceeee
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQ-VSEGMPIICMDLLSNEPKYPCGIDDWVALG-DGKGNMTIVRVVGDVHTPQLSFT 513 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~s~~~~~~la~g-~~dg~I~iw~~~~~~~~~~~~~~ 513 (1088)
++.++.+..+ +........... ..+...+..+.+ .. +...++.+ ..|+.+.+|++.... . ...
T Consensus 302 ~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~d~~~~~~~~~~~~-~---~~~ 366 (466)
T COG2319 302 GSSDGTVRLW---DLETGKLLSSLTLKGHEGPVSSLSF-SP-------DGSLLVSGGSDDGTIRLWDLRTGK-P---LKT 366 (466)
T ss_pred eeCCCcEEEE---EcCCCceEEEeeecccCCceEEEEE-CC-------CCCEEEEeecCCCcEEeeecCCCc-e---eEE
Confidence 4555555544 333222111111 122234555555 31 12344444 678899999887654 1 001
Q ss_pred eeeeccccceeeeEEEeecCCCeEEEE-ECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCC
Q 001391 514 FTWSAGIERQLLGTYWCKSLGHRFIFT-ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED 592 (1088)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~s~dg~~L~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg 592 (1088)
.. ....... ..+++ ....+. +..++.+.+|+...... ...+. .+...+....+++++
T Consensus 367 --~~--~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~ 424 (466)
T COG2319 367 --LE--GHSNVLS--VSFSP-DGRVVSSGSTDGTVRLWDLSTGSL--------------LRNLD-GHTSRVTSLDFSPDG 424 (466)
T ss_pred --ec--CCceEEE--EEECC-CCCEEEEecCCCceEEEecccCee--------------eeecc-CCCCcEEEEEECCCC
Confidence 01 1110112 23444 333443 78899999999885421 11111 111678899999999
Q ss_pred CEEEEEcCCCcEEEEeCCc
Q 001391 593 EVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 593 ~~LatGs~dg~I~Iw~~~~ 611 (1088)
..++.++.++++.+|+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999774
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-12 Score=146.90 Aligned_cols=367 Identities=22% Similarity=0.333 Sum_probs=251.8
Q ss_pred CceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-eEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 14 g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..+...|.++.|. +. +..++.+. ++.+.+|+...+. .+..+...+...+..+.+. . +++. ..+
T Consensus 62 ~~~~~~i~~~~~~--~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~---~~~ 126 (466)
T COG2319 62 RGHEDSITSIAFS--PD----GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-S-----PDGN---SIL 126 (466)
T ss_pred eeccceEEEEEEC--CC----CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-C-----CCcc---eEE
Confidence 3466789999999 77 77788776 8999999998886 6667766443356677662 2 5551 233
Q ss_pred EE-EC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCc
Q 001391 92 AL-FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSS 168 (1088)
Q Consensus 92 a~-~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~ 168 (1088)
+. .. ++.+.+|++... ......+..|...|.+++|+| ++..+++++. |+.+++|++..+.
T Consensus 127 ~~~~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 127 LASSSLDGTVKLWDLSTP--------------GKLIRTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred eccCCCCccEEEEEecCC--------------CeEEEEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCc
Confidence 33 44 899999999841 356777889999999999999 8888888885 9999999999877
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
.+..+..+. ..+..+++. +++. .+++++.|+.|++||.. .+.
T Consensus 190 ~~~~~~~~~-~~v~~~~~~---~~~~~~~~~~~~d~~i~~wd~~---------------------------------~~~ 232 (466)
T COG2319 190 PLSTLAGHT-DPVSSLAFS---PDGGLLIASGSSDGTIRLWDLS---------------------------------TGK 232 (466)
T ss_pred eEEeeccCC-CceEEEEEc---CCcceEEEEecCCCcEEEEECC---------------------------------CCc
Confidence 777776633 345556653 5665 55556999999999876 444
Q ss_pred eeE-EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEE
Q 001391 248 NLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITA 324 (1088)
Q Consensus 248 ~~~-~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg 324 (1088)
.+. .+.+|.... -..|+|++.++++++.|+.+++|+...... .+. ...+|...+.++.|.+ ..++++
T Consensus 233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~--~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 233 LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-------LLR--TLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-------EEE--EEecCCccEEEEEECCCCCEEEEe
Confidence 555 678888875 448999999999999999999999987531 222 3378889999999984 777789
Q ss_pred eCCCcEEEEcC-CCceeEEEc--ccCCCCeEEEEEcCCCCEEEEE-eCCCCEEEEEcCCCCCCcccCCccccccCCCcce
Q 001391 325 GEDCTCRVWGS-DGKQLKMIK--EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~--~h~~~~V~~l~~~~dg~~l~tg-~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1088)
+.|+.+++|+. ......... .|.. .+..+.+.+++..++.+ ..|+.+.+|+..... . .
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~----------------~ 364 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-P----------------L 364 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-e----------------e
Confidence 99999999988 444444444 6766 58999994332455555 688999999985421 0 0
Q ss_pred EEeeeCCCccceeeccCCCCceEEEEeccCCeEEEE--ecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCC
Q 001391 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA--TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPK 478 (1088)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~--t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 478 (1088)
... ... ..+..+.+.+ ...+.+ ..++.+..++...... ........ ..+.......
T Consensus 365 ~~~------------~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~---- 422 (466)
T COG2319 365 KTL------------EGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL---LRNLDGHT-SRVTSLDFSP---- 422 (466)
T ss_pred EEe------------cCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCee---eeeccCCC-CcEEEEEECC----
Confidence 000 000 1155666666 423332 4556666444333221 11111110 3444444433
Q ss_pred CcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 479 YPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 479 ~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
.+..++.+..++.+++|+...
T Consensus 423 ----~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 423 ----DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ----CCcEEEEecCCCcEEEEeccC
Confidence 346788889999999998875
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=145.72 Aligned_cols=276 Identities=16% Similarity=0.204 Sum_probs=195.6
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-------C-----eeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-------G-----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-------g-----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
..+..|+ || |.-|++-+ |..+++|++.. + +...+++..++..|..-+|-+.--...|+.
T Consensus 52 ~kgckWS--PD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-- 123 (406)
T KOG2919|consen 52 LKGCKWS--PD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-- 123 (406)
T ss_pred hccceeC--CC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc--
Confidence 4477899 99 77777766 89999999842 1 223344555566788777754323345665
Q ss_pred eeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeecc--CCCCc---EEEEEEecccCCCCEEEEEEcCCcEE
Q 001391 87 VTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--RLSHW---VFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1088)
Q Consensus 87 ~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~---I~~v~f~p~~~d~~~lasgs~Dg~V~ 160 (1088)
.++++ +.+.-|++||.-++. +.+.+. .|.+. -.+++|+| ||.+|..| ..++|+
T Consensus 124 --~l~a~ssr~~PIh~wdaftG~---------------lraSy~~ydh~de~taAhsL~Fs~---DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 124 --NLFAVSSRDQPIHLWDAFTGK---------------LRASYRAYDHQDEYTAAHSLQFSP---DGEQLFAG-YKRCIR 182 (406)
T ss_pred --ceeeeccccCceeeeeccccc---------------cccchhhhhhHHhhhhheeEEecC---CCCeEeec-ccceEE
Confidence 45555 458999999988643 333332 34443 47899999 99999866 578999
Q ss_pred EEEc-CCCce---EEEec---cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 161 VWDI-SNSSI---ILEVH---SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 161 iWd~-~~~~~---~~~~~---~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
++|+ +.|.. ..++. .....++...++. ..+..+++.|+.-..+-|+...
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~s--P~~~~~~a~gsY~q~~giy~~~---------------------- 238 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFS--PMDSKTLAVGSYGQRVGIYNDD---------------------- 238 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeecc--CCCCcceeeecccceeeeEecC----------------------
Confidence 9999 44432 11111 1223334444442 2234588999888888888776
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCcccCCCCceeeeceeeeccCc-ce
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RV 311 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~-~I 311 (1088)
...+++.+.||.+.|+.+.|.++|..|.+|+. |-.|-.||++..+. .+ +.+..|.. .=
T Consensus 239 -----------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-------pv--~~L~rhv~~TN 298 (406)
T KOG2919|consen 239 -----------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-------PV--YALERHVGDTN 298 (406)
T ss_pred -----------CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-------hh--hhhhhhccCcc
Confidence 67888899999999999999999999999876 67899999987532 22 25555544 33
Q ss_pred EEEEEC----CCEEEEEeCCCcEEEEcC-C-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 312 WDCCLT----DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 312 ~~v~~~----~~~l~sg~~Dg~i~vWd~-~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
..+.|. ++.|++|+.||.|++||+ . |.....+..|.. .+..++++|--.+++|++..
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 345554 789999999999999999 3 677777877877 79999999998888887754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-14 Score=143.45 Aligned_cols=259 Identities=17% Similarity=0.257 Sum_probs=179.4
Q ss_pred eEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEec----
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLK---- 142 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p---- 142 (1088)
.++..|| |||. -+|+.+.|+.+++|++..+.-.... +.....+....++ .....|.+.+|-+
T Consensus 52 ~kgckWS-------PDGS---ciL~~sedn~l~~~nlP~dlys~~~---~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 52 LKGCKWS-------PDGS---CILSLSEDNCLNCWNLPFDLYSKKA---DGPLNFSKHLSYRYQEGETVYDYCWYSRMKS 118 (406)
T ss_pred hccceeC-------CCCc---eEEeecccCeeeEEecChhhcccCC---CCccccccceeEEeccCCEEEEEEeeecccc
Confidence 5667777 8984 6777778999999999854311110 0011112222221 1235677777742
Q ss_pred ccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC----CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec-cCcccc
Q 001391 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVAP 217 (1088)
Q Consensus 143 ~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~----~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~-~~~~~~ 217 (1088)
..++..++|+.+.|.-|++||.-+|+....+..- +-....++.| ++||..|++|. ...|++||.. .++.-+
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F---s~DGeqlfaGy-krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF---SPDGEQLFAGY-KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe---cCCCCeEeecc-cceEEEeeccCCCCCCc
Confidence 1125678999999999999999999887766521 1223445555 89999999874 6789999984 111000
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
. .....+.-.+..+-|.+++|+|.. +.++.++.-+++-|++-...
T Consensus 195 v--------------------------y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-------- 240 (406)
T KOG2919|consen 195 V--------------------------YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-------- 240 (406)
T ss_pred c--------------------------hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--------
Confidence 0 000011122457789999999955 58899999999999887764
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeC-CCcEEEEcC--CCceeEEEcccCCCCeEEEEE--cCCCCEEEEEeCC
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS--DGKQLKMIKEHIGRGIWRCLY--DSLSSLLVTAGFD 369 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~--~~dg~~l~tg~~D 369 (1088)
.++. .+.+|.+.|+.++|. ++.|++|+. |-.|..||+ ...++..+..|.+..=..|.| .|++++|++|+.|
T Consensus 241 ~pl~--llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 241 RPLQ--LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD 318 (406)
T ss_pred Ccee--eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence 3343 778999999999998 788888875 678999999 567888888887643345554 6889999999999
Q ss_pred CCEEEEEcCC
Q 001391 370 SAIKVHQFQA 379 (1088)
Q Consensus 370 g~I~iwd~~~ 379 (1088)
|.|++||+++
T Consensus 319 G~V~vwdlk~ 328 (406)
T KOG2919|consen 319 GSVRVWDLKD 328 (406)
T ss_pred ccEEEEecCC
Confidence 9999999964
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-13 Score=137.30 Aligned_cols=258 Identities=16% Similarity=0.214 Sum_probs=182.3
Q ss_pred CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-----CCEEEEEEeccCCCCCCCCCCccccccceeeec
Q 001391 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1088)
Q Consensus 54 g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l 128 (1088)
++.+.++..+ ..++++.||-. ++.+ .+||.+. .+.|.|..+.... .+.+...
T Consensus 35 ~~eiy~Y~ap--~~lya~~Ws~~-----~~~~---~rla~gS~~Ee~~Nkvqiv~ld~~s-------------~e~~~~a 91 (364)
T KOG0290|consen 35 RKEIYTYNAP--WPLYAMNWSVR-----PDKK---FRLAVGSFIEEYNNKVQIVQLDEDS-------------GELVEDA 91 (364)
T ss_pred cceEEEecCC--CceeeeccccC-----CCcc---eeEEEeeeccccCCeeEEEEEccCC-------------CceeccC
Confidence 4556666653 35899999843 5553 7777765 4788888887433 1222111
Q ss_pred -cCCCCcEEEEEEecccCCC-----CEEEEEEcCCcEEEEEcCCCceEEE----ec----cCCceeEEEEeeecCCCCCc
Q 001391 129 -PRLSHWVFDVCFLKVCNGN-----RSLAIGCSDNSIRVWDISNSSIILE----VH----SPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 129 -~~h~~~I~~v~f~p~~~d~-----~~lasgs~Dg~V~iWd~~~~~~~~~----~~----~~~~~~~~s~~~~~~s~~~~ 194 (1088)
..|.-+++.+-|.| +. ++|||.+ ..+|+|.+...+.... +. ......+.|..+ +..+..
T Consensus 92 ~fd~~YP~tK~~wiP---d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~ 164 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIP---DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPN 164 (364)
T ss_pred CCCCCCCccceEecC---CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcc
Confidence 36888999999999 44 3677764 5799999974221111 11 122233444443 456678
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVS 273 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s 273 (1088)
+|.+.+.|-+..|||++++. .+..-..+..|...|+.|+|..++ +.++|
T Consensus 165 ~igtSSiDTTCTiWdie~~~------------------------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FAS 214 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGV------------------------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFAS 214 (364)
T ss_pred eeEeecccCeEEEEEEeecc------------------------------ccceeeEEEecCcceeEEEeccCccceEEE
Confidence 99999999999999998210 122344567899999999999866 57899
Q ss_pred EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCC-CcEEEEcC--CCceeEEEcccC
Q 001391 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGED-CTCRVWGS--DGKQLKMIKEHI 347 (1088)
Q Consensus 274 ~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~D-g~i~vWd~--~~~~~~~~~~h~ 347 (1088)
++.||+||++|++.... ...+ +.-.....+...++|+ ++++++-..| ..|.+-|+ ...++..+++|.
T Consensus 215 vgaDGSvRmFDLR~leH-----STII--YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 215 VGADGSVRMFDLRSLEH-----STII--YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred ecCCCcEEEEEeccccc-----ceEE--ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 99999999999998643 1222 1112224567788887 5788887776 46888998 577889999999
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCC
Q 001391 348 GRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 348 ~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ .|..++|.|.. ..|.|+|.|..+.+||+..
T Consensus 288 a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 288 A-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred c-cccceEecCCCCceeeecCCcceEEEEeccc
Confidence 9 79999999965 5899999999999999964
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=145.71 Aligned_cols=285 Identities=13% Similarity=0.147 Sum_probs=204.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC------CCeeEEEEeeeCCcceEEEEecccccccCCCcccee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE------AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~------tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
|.|.|.++.|| .+ +++|++|. |..++||++. +.+.+.....|+...|++++|. ...
T Consensus 55 H~GCiNAlqFS--~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-------~~N---- 117 (609)
T KOG4227|consen 55 HTGCINALQFS--HN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-------LEN---- 117 (609)
T ss_pred hccccceeeec--cC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-------cCC----
Confidence 78999999999 77 89999998 5899999985 3466666666775679999997 332
Q ss_pred eEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
..+.+++ +++|.+.|+++.. .-.+..-....+.|+.+..+| ..+.+++.+.++.|.+||....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~q-------------si~V~~~~~~~~~VY~m~~~P---~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQ-------------SIYVANENNNRGDVYHMDQHP---TDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred eeEecCCCcceeEeeecccce-------------eeeeecccCcccceeecccCC---CCceEEEEecCceEEEEeccCC
Confidence 3444444 7999999998643 111222222335899999999 7889999999999999999876
Q ss_pred ceEEEec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 168 SIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 168 ~~~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
..-..+. .......+++.|++.. ..+|++.+..+.+-+||.+- .
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~--P~Li~~~~~~~G~~~~D~R~--------------------------------~ 227 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPET--PALILVNSETGGPNVFDRRM--------------------------------Q 227 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCC--ceeEEeccccCCCCceeecc--------------------------------c
Confidence 5322221 2234456777776543 46788888889999999871 1
Q ss_pred eeeeEE------EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-------CcceE
Q 001391 246 AVNLFR------LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-------NARVW 312 (1088)
Q Consensus 246 ~~~~~~------~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-------~~~I~ 312 (1088)
..++.. +......-.++.|+|.|..+++--.-..-.+||+...++ -.+ ...| ...+.
T Consensus 228 ~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~------~V~----k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 228 ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC------FVL----KSDHNPNGYCNIKTIK 297 (609)
T ss_pred cchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc------eeE----eccCCCCcceeeeeee
Confidence 111111 111122235788999999998877766677889887544 111 1222 23577
Q ss_pred EEEEC-CCEEEEEeCCCcEEEEcCC------C------------------ceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 313 DCCLT-DSFIITAGEDCTCRVWGSD------G------------------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 313 ~v~~~-~~~l~sg~~Dg~i~vWd~~------~------------------~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
+++|. +..+++|+.+-.|.+|.+. | +.+..+++|.. -+..+.|+|...+|++.|
T Consensus 298 S~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSG 376 (609)
T KOG4227|consen 298 SMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSG 376 (609)
T ss_pred eeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecCCcceEeccc
Confidence 78887 5669999999999999981 1 23567889988 688999999999999999
Q ss_pred CCCCEEEEEcC
Q 001391 368 FDSAIKVHQFQ 378 (1088)
Q Consensus 368 ~Dg~I~iwd~~ 378 (1088)
-...+++|...
T Consensus 377 VE~~~KlWS~~ 387 (609)
T KOG4227|consen 377 VENSFKLWSDH 387 (609)
T ss_pred hhhheeccccc
Confidence 99999999863
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=143.70 Aligned_cols=219 Identities=18% Similarity=0.257 Sum_probs=162.2
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEE---ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL---FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~---~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
-+..+..+|..+.|...+|...|- ++.+. +|+|..-+.-+..-.. .-+..-.+.||++.|.
T Consensus 22 e~CYddIrVs~~tWDS~fcavNPk-----fiAvi~easgGgaf~ViPl~k~Gr-----------~d~~~P~v~GHt~~vL 85 (472)
T KOG0303|consen 22 DQCYDDIRVSRVTWDSSFCAVNPK-----FVAVIIEASGGGAFLVIPLVKTGR-----------MDASYPLVCGHTAPVL 85 (472)
T ss_pred hhhhcceeeeeeeccccccccCCc-----eEEEEEecCCCcceeecccccccc-----------cCCCCCCccCcccccc
Confidence 334556678888887666665553 33333 3455666666553210 0122234569999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+++|+|. +...||+||.|.+|.||++..+.....
T Consensus 86 Di~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~-------------------------------------------- 119 (472)
T KOG0303|consen 86 DIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRD-------------------------------------------- 119 (472)
T ss_pred ccccCcc--CCceeecCCCCceEEEEECCCcccccC--------------------------------------------
Confidence 9999994 667899999999999999844321111
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 295 (1088)
..+++..+.||...|.-|+|+|.. ..|+|++.|.+|.+||+.++..
T Consensus 120 ----------------------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea----- 166 (472)
T KOG0303|consen 120 ----------------------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA----- 166 (472)
T ss_pred ----------------------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-----
Confidence 224577788999999999999965 5789999999999999999743
Q ss_pred ceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe---CC
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG---FD 369 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~---~D 369 (1088)
.+ ++ .|...|+++.|+ |.++++.+.|..|||||. +++.+..-.+|.+..-....|..++.++.||- .+
T Consensus 167 --li---~l-~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 167 --LI---TL-DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred --ee---ec-CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 22 33 399999999998 899999999999999999 88888888888875456677888888444443 47
Q ss_pred CCEEEEEcCC
Q 001391 370 SAIKVHQFQA 379 (1088)
Q Consensus 370 g~I~iwd~~~ 379 (1088)
..+.+||...
T Consensus 241 Rq~aLwdp~n 250 (472)
T KOG0303|consen 241 RQIALWDPNN 250 (472)
T ss_pred cceeccCccc
Confidence 8899999853
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=142.52 Aligned_cols=295 Identities=13% Similarity=0.147 Sum_probs=190.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+.|+++.|- .+ .+|.+|. .|.|++|++++.+.+..++.+.+..|..++.. |++ .+..-+
T Consensus 13 ~~~~v~s~~fq--a~-----~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~-------p~d----~l~tqg 74 (323)
T KOG0322|consen 13 HSSSVTSVLFQ--AN-----ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSI-------PND----SLDTQG 74 (323)
T ss_pred ccchheehhhc--cc-----hhhhcccccceEEEEEeecCccchhhhhhccceeeceeec-------CCc----chhhcC
Confidence 45889999998 55 4588888 59999999999998888887787789999988 543 455556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc--CCC----CEEEEEEc--CCcEEEEEcCC
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGN----RSLAIGCS--DNSIRVWDISN 166 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~--~d~----~~lasgs~--Dg~V~iWd~~~ 166 (1088)
.|..+.+|++.... ... -|+=.++++.|.+.+ ..+ ++++.=+. |- +.+-|...
T Consensus 75 Rd~~L~lw~ia~s~-------------~i~-----i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~ 135 (323)
T KOG0322|consen 75 RDPLLILWTIAYSA-------------FIS-----IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGD 135 (323)
T ss_pred CCceEEEEEccCcc-------------eEE-----EeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCc
Confidence 69999999998532 111 222233444443311 011 11221111 11 22222222
Q ss_pred CceEEEeccCCc---eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 167 SSIILEVHSPER---CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 167 ~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
...+.....++. ....+...-.......++++|..+|.+.+||+.++... +.+ +
T Consensus 136 ~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~--------------------~~~---~ 192 (323)
T KOG0322|consen 136 TTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI--------------------IQL---P 192 (323)
T ss_pred cceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee--------------------ecc---c
Confidence 222222221111 11111111001123346788999999999999832111 110 1
Q ss_pred cceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE
Q 001391 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (1088)
Q Consensus 244 ~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l 321 (1088)
...+.......|+.+|.++.|.+.-..=++++.+..+..|+++.... .-.+.. ...-..-.|..+.+. +..+
T Consensus 193 ~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g-----slq~~~-e~~lknpGv~gvrIRpD~KIl 266 (323)
T KOG0322|consen 193 QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG-----SLQIRK-EITLKNPGVSGVRIRPDGKIL 266 (323)
T ss_pred cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC-----cccccc-eEEecCCCccceEEccCCcEE
Confidence 12234445567999999999998777778999999999999876421 011110 122222345555555 7899
Q ss_pred EEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+|++-|+.||||.. +.+++..++.|.+ +|.+++|+|+..++|.++.|++|.+|++
T Consensus 267 ATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999 8999999999998 7999999999999999999999999986
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-14 Score=140.40 Aligned_cols=245 Identities=17% Similarity=0.237 Sum_probs=167.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC--CeeE--EEEe----eeCCcceEEEEecccccccCCCccce
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA--GTLI--RPFQ----VFHGIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t--g~~~--~~~~----~~~~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
|..|++.+.|. |+..+...-|++.++..+|+|.+.. ++.. ..+. .+...++.+..|.. -|.
T Consensus 95 ~~YP~tK~~wi--Pd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne------~dp--- 163 (364)
T KOG0290|consen 95 HPYPVTKLMWI--PDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE------VDP--- 163 (364)
T ss_pred CCCCccceEec--CCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCccccccccc------CCc---
Confidence 67899999999 9833333455666667899999873 2211 1111 12234677777763 333
Q ss_pred eeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcC
Q 001391 88 TFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 88 ~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~ 165 (1088)
.++.++ -|-+..|||++.+. ....-..|-.|...|++++|.. ++ +.+|+.|.||.||++|++
T Consensus 164 -~~igtSSiDTTCTiWdie~~~------------~~~vkTQLIAHDKEV~DIaf~~---~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 164 -NLIGTSSIDTTCTIWDIETGV------------SGTVKTQLIAHDKEVYDIAFLK---GSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred -ceeEeecccCeEEEEEEeecc------------ccceeeEEEecCcceeEEEecc---CccceEEEecCCCcEEEEEec
Confidence 455554 49999999999742 1334456678999999999997 54 589999999999999998
Q ss_pred CCceEEEe-ccCC-ceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 166 NSSIILEV-HSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 166 ~~~~~~~~-~~~~-~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
..+....+ +.+. ...+. ++.+...|-+++|+-.. ...|.|-|++
T Consensus 228 ~leHSTIIYE~p~~~~pLl--RLswnkqDpnymATf~~dS~~V~iLDiR------------------------------- 274 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLL--RLSWNKQDPNYMATFAMDSNKVVILDIR------------------------------- 274 (364)
T ss_pred ccccceEEecCCCCCCcce--eeccCcCCchHHhhhhcCCceEEEEEec-------------------------------
Confidence 77654333 2333 22232 33334455667777544 4678999998
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---C
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D 318 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~ 318 (1088)
....++.++++|.+.|++|+|.|.. ..++|+++|..+-+||+..... .....+...+.-.+.|..+.|+ +
T Consensus 275 -~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~-----~~~~dPilay~a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 275 -VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-----ENGEDPILAYTAGGEVNQIQWSSSQP 348 (364)
T ss_pred -CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc-----cCCCCchhhhhccceeeeeeecccCC
Confidence 1567889999999999999999965 6899999999999999987422 0111111333356778999997 6
Q ss_pred CEEEEEeC
Q 001391 319 SFIITAGE 326 (1088)
Q Consensus 319 ~~l~sg~~ 326 (1088)
..|+.+..
T Consensus 349 Dwiai~~~ 356 (364)
T KOG0290|consen 349 DWIAICFG 356 (364)
T ss_pred CEEEEEec
Confidence 67776653
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=148.82 Aligned_cols=244 Identities=13% Similarity=0.145 Sum_probs=155.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.|.|.|++|+ .+ |.+|++|+| -.+.|||...-++++.+...|...|+++.|-|. .+. +.++.++
T Consensus 49 H~GCVN~LeWn--~d----G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~-----tnn---riv~sgA 114 (758)
T KOG1310|consen 49 HTGCVNCLEWN--AD----GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY-----TNN---RIVLSGA 114 (758)
T ss_pred ccceecceeec--CC----CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc-----CCC---eEEEecc
Confidence 78999999999 88 999999995 889999999889999888666667999999864 232 2445556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceE---
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSII--- 170 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~--- 170 (1088)
||+.|+|+|+.....-+.. .-..+..+.+..|.+.|..++..| ++ ..+.+++.||+|+-+|++....-
T Consensus 115 gDk~i~lfdl~~~~~~~~d-----~~~~~~~~~~~cht~rVKria~~p---~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMD-----HGMEETTRCWSCHTDRVKRIATAP---NGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred CcceEEEEecccccccccc-----cCccchhhhhhhhhhhhhheecCC---CCCceEEEecCCcceeeecccCCccCCcc
Confidence 7999999999842210110 001345566778999999999999 77 68999999999999999763211
Q ss_pred ----EEec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC--CC-CCccCCCCCCCCceeEecc
Q 001391 171 ----LEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN--SP-EGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 171 ----~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~--~~-~~~s~~~~~~~~~~~~~~~ 241 (1088)
..+. .+..-.++++.+. ..+..+|+.|+.|-..++||.+. ..+... +. ..+. ..+.++++.+.
T Consensus 187 ~~~~~~l~ny~~~lielk~ltis--p~rp~~laVGgsdpfarLYD~Rr--~lks~~s~~~~~~~p----p~~~~cv~yf~ 258 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTIS--PSRPYYLAVGGSDPFARLYDRRR--VLKSFRSDGTMNTCP----PKDCRCVRYFS 258 (758)
T ss_pred ccccHHHHHhchhhheeeeeeec--CCCCceEEecCCCchhhhhhhhh--hccCCCCCccccCCC----Ccccchhheec
Confidence 0010 1111223444442 23457899999999999999651 111100 11 1111 11333444443
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
..........+..--..++-++|+|+|.-|+..-..-.|+++|+..++
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 221100000000011225668899999776665555589999987654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-15 Score=166.71 Aligned_cols=268 Identities=16% Similarity=0.212 Sum_probs=198.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~- 93 (1088)
|...|.|+.|. .. ++++++|+| ..++||...++.+++.+.+|.+ .|..++.+ .+. .++++
T Consensus 189 H~naVyca~fD--rt----g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs-------~~n----~~iaaa 250 (1113)
T KOG0644|consen 189 HRNAVYCAIFD--RT----GRYIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVS-------SNN----TMIAAA 250 (1113)
T ss_pred hhhheeeeeec--cc----cceEeecCccceeeeeeccchhhhccCCCCcc-ccchhccc-------hhh----hhhhhc
Confidence 56779999999 66 999999995 9999999999999999999888 79999998 442 44444
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+-|..|++|.+.. ..++..+.||++.|++++|+| .++.+.||++++||..- ......
T Consensus 251 S~D~vIrvWrl~~---------------~~pvsvLrghtgavtaiafsP-------~~sss~dgt~~~wd~r~-~~~~y~ 307 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPD---------------GAPVSVLRGHTGAVTAIAFSP-------RASSSDDGTCRIWDARL-EPRIYV 307 (1113)
T ss_pred ccCceEEEEecCC---------------CchHHHHhccccceeeeccCc-------cccCCCCCceEeccccc-cccccC
Confidence 4489999999985 567888999999999999999 44778999999999872 111111
Q ss_pred ----ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 174 ----HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 174 ----~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
...++....+..+ ..++..+++|+.|++-..|....
T Consensus 308 prp~~~~~~~~~~s~~~---~~~~~~f~Tgs~d~ea~n~e~~~------------------------------------- 347 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILF---ENNGDRFLTGSRDGEARNHEFEQ------------------------------------- 347 (1113)
T ss_pred CCCCCcccccceeeeec---cccccccccccCCcccccchhhH-------------------------------------
Confidence 1112233333333 34567788999999888887650
Q ss_pred EEEeCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEe
Q 001391 250 FRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAG 325 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~ 325 (1088)
+..|...+.-+.++.+ ..+.+++-.+-.+.+|++.++.. .. .+.+|...+..+.++ +....+++
T Consensus 348 --l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l--------~H--~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 348 --LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL--------LH--NLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred --hhhhccceEEEeccccccccceeeeeeeEeeeeecccchh--------hh--hhcccccceeeeeecCCCcHhhhhcc
Confidence 0111111111222222 24567777788899999998633 32 778899999999988 45678999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.||...|||+ .|.+++.....++ .+...+|++||..++....-|.+.|...
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 9999999999 7877766433334 3778899999999998888899988876
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=128.50 Aligned_cols=283 Identities=17% Similarity=0.164 Sum_probs=190.2
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC---------C-eeEEEEeeeCCcceEEEEecccccccCCCccce
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---------G-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t---------g-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
.|.+-+++ |. +++|++|. +|+|-|..+.+ | ..+-.++.|++ +|..++|. |
T Consensus 12 tvf~qa~s--p~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-piy~~~f~--------d---- 72 (325)
T KOG0649|consen 12 TVFAQAIS--PS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-PIYYLAFH--------D---- 72 (325)
T ss_pred HHHHHhhC--Cc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-Ceeeeeee--------h----
Confidence 45666788 87 89999999 69999999853 2 23445577777 89999997 3
Q ss_pred eeEEEEECCCEEEEEEeccCCC-CCCCCCCccccccceeeeccCCC-----CcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 88 TFEVALFGEKRVKLFELNFELS-PNSQYQPETCVNLSLVQSLPRLS-----HWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 88 ~~~la~~gd~~v~iw~l~~~~~-~~~~~~~~~~~~~~~~~~l~~h~-----~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
..|.++|||.|+=|.++.... ...+ .-.....+.|. -.|+++-+.| ..+.+..++.|+.++-
T Consensus 73 -~~Lls~gdG~V~gw~W~E~~es~~~K--------~lwe~~~P~~~~~~evPeINam~ldP---~enSi~~AgGD~~~y~ 140 (325)
T KOG0649|consen 73 -DFLLSGGDGLVYGWEWNEEEESLATK--------RLWEVKIPMQVDAVEVPEINAMWLDP---SENSILFAGGDGVIYQ 140 (325)
T ss_pred -hheeeccCceEEEeeehhhhhhccch--------hhhhhcCccccCcccCCccceeEecc---CCCcEEEecCCeEEEE
Confidence 688888999999999885331 0000 00111112222 4689999998 6666777778999999
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
||+++|+...++.+|..- +.++.. . .....+.+|+.||++++||.++.+....+.
T Consensus 141 ~dlE~G~i~r~~rGHtDY-vH~vv~--R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie--------------------- 195 (325)
T KOG0649|consen 141 VDLEDGRIQREYRGHTDY-VHSVVG--R-NANGQILSGAEDGTVRVWDTKTQKHVSMIE--------------------- 195 (325)
T ss_pred EEecCCEEEEEEcCCcce-eeeeee--c-ccCcceeecCCCccEEEEeccccceeEEec---------------------
Confidence 999999999999988753 334432 1 234579999999999999999433221110
Q ss_pred cccceeeeEEEeCCC-CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCE
Q 001391 242 QQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~-~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~ 320 (1088)
. .+.-..++.|. .+|.+++-+ ..+++.|+. ..+.+|.++.... . ....-.+++..+.|.+..
T Consensus 196 ~---yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~--------t---~vfpipa~v~~v~F~~d~ 258 (325)
T KOG0649|consen 196 P---YKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSES--------T---CVFPIPARVHLVDFVDDC 258 (325)
T ss_pred c---ccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCc--------e---EEEecccceeEeeeecce
Confidence 0 00001122333 457777764 446665544 5799999998543 2 344455678889999999
Q ss_pred EEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEE
Q 001391 321 IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVH 375 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iw 375 (1088)
++++++.+.+.-|.+.|..-........ ..++..++..- ++|-.+|..+.+.++
T Consensus 259 vl~~G~g~~v~~~~l~Gvl~a~ip~~s~-~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 259 VLIGGEGNHVQSYTLNGVLQANIPVEST-ACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEeccccceeeeeeccEEEEeccCCcc-ceeeecccCCceEEEEecccceeeeee
Confidence 9999999999999998876666544333 35666654332 455556666666554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=154.81 Aligned_cols=261 Identities=16% Similarity=0.221 Sum_probs=177.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC--------CeeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--------GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t--------g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
|...|.+++|. |. ...|++++ +++|.+|+++. -+.+.+|.+|.+ +|.+++++ +++.
T Consensus 293 ~~d~ir~l~~~--~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-PVl~v~v~-------~n~~- 357 (577)
T KOG0642|consen 293 HDDCIRALAFH--PS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-PVLCVVVP-------SNGE- 357 (577)
T ss_pred chhhhhhhhcC--CC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-ceEEEEec-------CCce-
Confidence 66778888998 76 56677776 89999999932 367899999888 89999998 6662
Q ss_pred eeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 87 ~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
..+..+-|++|+.|++.....+.+.+.| ..+..++.||.+.||.+++++ ....|++++.||++++|+...
T Consensus 358 --~~ysgg~Dg~I~~w~~p~n~dp~ds~dp-----~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 358 --HCYSGGIDGTIRCWNLPPNQDPDDSYDP-----SVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred --EEEeeccCceeeeeccCCCCCcccccCc-----chhccceeccccceeeeeecc---cccceeeecCCceEEeeccCC
Confidence 3444444999999998843322223322 456678899999999999999 888899999999999999876
Q ss_pred CceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 167 SSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 167 ~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
... .++..+. ...-.++.+... +-...++....+.-.+.+.. .
T Consensus 428 ~~~-~~f~~~~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~e---------------------------------v 471 (577)
T KOG0642|consen 428 ESP-CTFGEPKEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDME---------------------------------V 471 (577)
T ss_pred cCc-cccCCccccCCcceEeeccc--hhHhhhhhcccccccchhhh---------------------------------h
Confidence 655 2222111 112223333211 11122222222222223322 1
Q ss_pred eeeeEEEe-------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-
Q 001391 246 AVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1088)
Q Consensus 246 ~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~- 317 (1088)
...+..+. .-...+..+.++|.+.+.+++..|+.|+++|..++. .+. ....|...++++++.
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~--------~l~--s~~a~~~svtslai~~ 541 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK--------ILH--SMVAHKDSVTSLAIDP 541 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc--------cch--heeeccceecceeecC
Confidence 11111111 112457788899999999999999999999998853 332 667788899999997
Q ss_pred -CCEEEEEeCCCcEEEEcC-CCceeEEEcccC
Q 001391 318 -DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~ 347 (1088)
+.+|++++.||.+++|.+ ...++.....|.
T Consensus 542 ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 542 NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCceEEeecCCceeehhhccchheeecccccc
Confidence 789999999999999999 444444444444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=169.53 Aligned_cols=242 Identities=17% Similarity=0.266 Sum_probs=178.8
Q ss_pred eEEEEEeccCCCCCCC--CEEEEEe-CCeEEEEECCC---C---eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 20 ISALCFVHLPSHLSSL--PFLLAGS-GSQVLLYDLEA---G---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~--~~laag~-d~~I~vwd~~t---g---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
-..|+|. +. +++ .+||.|. ||.|.+||... + ..+.++..|++ .|.+++|+ +... .+
T Consensus 67 F~kL~W~--~~--g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-~V~gLDfN-------~~q~---nl 131 (1049)
T KOG0307|consen 67 FNKLAWG--SY--GSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-PVLGLDFN-------PFQG---NL 131 (1049)
T ss_pred ceeeeec--cc--CCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC-ceeeeecc-------ccCC---ce
Confidence 4577887 54 112 2566666 79999999865 2 45677888888 79999999 4441 57
Q ss_pred EEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 91 la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
||+++ ++.|.|||+.... ..|.+. -..-.+.|.+++|+. .....||+++.+|.+.|||++..+.
T Consensus 132 LASGa~~geI~iWDlnn~~---tP~~~~----------~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPE---TPFTPG----------SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred eeccCCCCcEEEeccCCcC---CCCCCC----------CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCc
Confidence 77766 7999999999643 222221 112457899999986 2345789999999999999998888
Q ss_pred EEEeccCCc-eeEEEEeeecCCCCCcEEEEEecC---CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 170 ILEVHSPER-CLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 170 ~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~d---g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
+..+..+.+ ..+..+.++++. ...|++++.| -.|.+||++ ..
T Consensus 197 ii~ls~~~~~~~~S~l~WhP~~--aTql~~As~dd~~PviqlWDlR--------------------------------~a 242 (1049)
T KOG0307|consen 197 IIKLSDTPGRMHCSVLAWHPDH--ATQLLVASGDDSAPVIQLWDLR--------------------------------FA 242 (1049)
T ss_pred ccccccCCCccceeeeeeCCCC--ceeeeeecCCCCCceeEeeccc--------------------------------cc
Confidence 777765544 334456665433 3344444433 358999998 14
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEE
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFI 321 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l 321 (1088)
..+++.+.+|...|.++.|++.+ .+++|++.|+.|.+|+.+++ +.+. .+.....++..+.|. +..+
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg--------Evl~--~~p~~~nW~fdv~w~pr~P~~~ 312 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG--------EVLG--ELPAQGNWCFDVQWCPRNPSVM 312 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc--------eEee--ecCCCCcceeeeeecCCCcchh
Confidence 56777889999999999999966 88999999999999999995 3443 444456789999998 5799
Q ss_pred EEEeCCCcEEEEcC
Q 001391 322 ITAGEDCTCRVWGS 335 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~ 335 (1088)
+.++.||.|-|+.+
T Consensus 313 A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 313 AAASFDGKISIYSL 326 (1049)
T ss_pred hhheeccceeeeee
Confidence 99999999999998
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-13 Score=139.64 Aligned_cols=262 Identities=14% Similarity=0.184 Sum_probs=186.0
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC------CceEEEeccCCceeEEEEeeecCCCCCc
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN------SSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~------~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (1088)
+.-+.+.+.+|.+.|.++.|+. ++++||+|+.|..+++|+++. .+.+.....|.++.++++.| .....
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F---~~~N~ 118 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF---DLENR 118 (609)
T ss_pred cchhhhhhhhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE---ccCCe
Confidence 3445567789999999999999 999999999999999999964 35566666778889999988 45677
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLV 272 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~ 272 (1088)
.+++|..+++|..-|++ +.+.+..+. ...+.|+.+..+|....++
T Consensus 119 ~~~SG~~~~~VI~HDiE---------------------------------t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~ 165 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIE---------------------------------TKQSIYVANENNNRGDVYHMDQHPTDNTLI 165 (609)
T ss_pred eEecCCCcceeEeeecc---------------------------------cceeeeeecccCcccceeecccCCCCceEE
Confidence 89999999999999998 444454443 2335899999999999999
Q ss_pred EEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCC--ceeEEEcccC
Q 001391 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDG--KQLKMIKEHI 347 (1088)
Q Consensus 273 s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~--~~~~~~~~h~ 347 (1088)
+.+.++.|.+||.+..+. .+.++.+........++.|+ +.+|+++++.+-+-+||... ..+....+..
T Consensus 166 ~~t~~~~V~~~D~Rd~~~-------~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~ 238 (609)
T KOG4227|consen 166 VVTRAKLVSFIDNRDRQN-------PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK 238 (609)
T ss_pred EEecCceEEEEeccCCCC-------CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccc
Confidence 999999999999988542 22222333444567788887 68999999999999999832 2222211111
Q ss_pred C-----CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce
Q 001391 348 G-----RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (1088)
Q Consensus 348 ~-----~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 422 (1088)
+ ..-.+..|+|+|+.+++--+-..-.+||+-.+....++... .++. .. ....+
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~---------------N~~G--Y~-----N~~T~ 296 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH---------------NPNG--YC-----NIKTI 296 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC---------------CCCc--ce-----eeeee
Confidence 1 01246789999998888776666677787543322222110 0111 00 01247
Q ss_pred EEEEeccCCeEEEEecCCeEEEEEeccC
Q 001391 423 RCLHLTSEDTLYIATNHGYLYHTKLCDM 450 (1088)
Q Consensus 423 ~~l~~s~~~~ll~~t~~g~i~~~~~~~~ 450 (1088)
++++|..+-.++.++.+-.|+.|++...
T Consensus 297 KS~~F~~D~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 297 KSMTFIDDYTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eeeeeecceeeeccCcccceEEEecCCC
Confidence 8888988767666666666998887653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-13 Score=139.74 Aligned_cols=259 Identities=17% Similarity=0.228 Sum_probs=174.0
Q ss_pred eCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 63 ~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
|...+|..+.|. +++. ..++++| |..|+||.++.....+. ....+....|..|...|+++.|+
T Consensus 11 H~~~pv~s~dfq-------~n~~---~~laT~G~D~~iriW~v~r~~~~~~------~~~V~y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 11 HDHEPVYSVDFQ-------KNSL---NKLATAGGDKDIRIWKVNRSEPGGG------DMKVEYLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred cCCCceEEEEec-------cCcc---cceecccCccceeeeeeeecCCCCC------ceeEEEeecccCCcceeEEEEEc
Confidence 345579999998 4431 3566654 99999999986542211 13467889999999999999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcC--------C-----C--ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEE
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDIS--------N-----S--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~--------~-----~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~ 206 (1088)
| +|++||+|+.+|.|.+|... + . -.+.......+.-+|.+++ ++++..+++|+.|+.++
T Consensus 75 p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W---s~d~~~l~s~s~dns~~ 148 (434)
T KOG1009|consen 75 P---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW---SPDSNFLVSGSVDNSVR 148 (434)
T ss_pred C---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc---cCCCceeeeeeccceEE
Confidence 9 99999999999999999876 2 1 1122222223344566655 68999999999999999
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
+||+. .+.....+.+|..-|..++|.|-++++++-+.|+..+.+.+.
T Consensus 149 l~Dv~---------------------------------~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 149 LWDVH---------------------------------AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred EEEec---------------------------------cceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99999 666777777777778888887777777777777755555544
Q ss_pred CCccc--------------------------------------CCC---------------C--------------ceee
Q 001391 287 AEYWK--------------------------------------DSD---------------S--------------IEEV 299 (1088)
Q Consensus 287 ~~~~~--------------------------------------~~~---------------~--------------~~~i 299 (1088)
..+.. .++ . .++.
T Consensus 196 ~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~ 275 (434)
T KOG1009|consen 196 LKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA 275 (434)
T ss_pred eeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce
Confidence 32211 000 0 0000
Q ss_pred eceeeeccCcceEEEEECC--------------------CEEEEEeCCCcEEEEcC-CCceeEEEc-ccCCCCeEEEEEc
Q 001391 300 GSSVLYGHNARVWDCCLTD--------------------SFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYD 357 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~~--------------------~~l~sg~~Dg~i~vWd~-~~~~~~~~~-~h~~~~V~~l~~~ 357 (1088)
..+.+.......+.|++ -.++.++ ...+.+||. .-.++.... -|-. +|+.++|+
T Consensus 276 --~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~-~iTDiaws 351 (434)
T KOG1009|consen 276 --ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYS-AITDIAWS 351 (434)
T ss_pred --eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeee-eecceeec
Confidence 01111222223333321 1234444 457899998 455665543 3544 79999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCC
Q 001391 358 SLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
+||..|+..+.||...+-.++..
T Consensus 352 ~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 352 DDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred CCCcEEEEeccCCceEEEEEcch
Confidence 99999999999998888777543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-14 Score=149.30 Aligned_cols=310 Identities=14% Similarity=0.110 Sum_probs=220.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~- 93 (1088)
|.|.|..|.|. .. +..|++|+ |..|.+||+.+++....|...|.+.|+...|-|. .+. ..++.
T Consensus 141 H~GcVntV~FN--~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~-----s~d----~ti~~~ 205 (559)
T KOG1334|consen 141 HKGCVNTVHFN--QR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF-----SGD----RTIVTS 205 (559)
T ss_pred CCCccceeeec--cc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCC-----CCC----cCceec
Confidence 77999999999 66 88999999 5999999999999988888767778999999865 332 44555
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+.|+.+++=.+.... ..+....+..|.+.|+.++..|. ...-+.+++.|+.+.-.|+........+
T Consensus 206 s~dgqvr~s~i~~t~------------~~e~t~rl~~h~g~vhklav~p~--sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 206 SRDGQVRVSEILETG------------YVENTKRLAPHEGPVHKLAVEPD--SPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred cccCceeeeeecccc------------ceecceecccccCccceeeecCC--CCCcccccccccceeeeeeccCCcccee
Confidence 559999998876432 13345567789999999999992 3357889999999999999876543322
Q ss_pred c---c--CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 174 H---S--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 174 ~---~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
. . +..-.+++++.. ..+...+++|+.|-.+++||.+.-...+.. +.+. ...+
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~--P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---------------~~~~------~f~p 328 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVD--PRNTNEFAVGGSDQFARVYDQRRIDKEENN---------------GVLD------KFCP 328 (559)
T ss_pred eeeccCCccceeeeeEecC--CCCccccccCChhhhhhhhcccchhhcccc---------------chhh------hcCC
Confidence 2 1 222356666653 334568999999999999998721111000 0000 0111
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc----eeeeceeeeccCc--ceEEEEECC---C
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI----EEVGSSVLYGHNA--RVWDCCLTD---S 319 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~----~~i~~~~~~~h~~--~I~~v~~~~---~ 319 (1088)
-+......-.|++++|+.++.-++++..|-.|++++-..+.-..+.+. +.++ ....||.. .|-.+-|-| .
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k-~vYKGHrN~~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK-RVYKGHRNSRTVKGVNFFGPRSE 407 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc-hhhcccccccccceeeeccCccc
Confidence 111112335699999998887777777888899995443322111111 2222 35778865 477888874 7
Q ss_pred EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 320 FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 320 ~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
++++|+.-|.|.+|+- +++.+..+.+-.. -|.||.-+|--..||+.|-|..||||...+
T Consensus 408 yVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred eEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 9999999999999999 7788888877766 699999999999999999999999998743
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-12 Score=123.56 Aligned_cols=246 Identities=11% Similarity=0.127 Sum_probs=167.6
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|+.-+++ |.++ .+++...+|.|.+..++.-.. .++..|. ...+-...+|.++|+.++|..
T Consensus 12 tvf~qa~s-------p~~~---~l~agn~~G~iav~sl~sl~s-~sa~~~g----k~~iv~eqahdgpiy~~~f~d---- 72 (325)
T KOG0649|consen 12 TVFAQAIS-------PSKQ---YLFAGNLFGDIAVLSLKSLDS-GSAEPPG----KLKIVPEQAHDGPIYYLAFHD---- 72 (325)
T ss_pred HHHHHhhC-------Ccce---EEEEecCCCeEEEEEehhhhc-cccCCCC----CcceeeccccCCCeeeeeeeh----
Confidence 35666777 5552 444445589999999984321 1222221 233445589999999999974
Q ss_pred CCEEEEEEcCCcEEEEEcCCCce------EEEeccCC------ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSI------ILEVHSPE------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~------~~~~~~~~------~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
.+|.+|+ ||.|+=|....... +.++..|. -..+.+|-+ .|..+-++.++.|+.++-||++
T Consensus 73 -~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l---dP~enSi~~AgGD~~~y~~dlE--- 144 (325)
T KOG0649|consen 73 -DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL---DPSENSILFAGGDGVIYQVDLE--- 144 (325)
T ss_pred -hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe---ccCCCcEEEecCCeEEEEEEec---
Confidence 5677776 69999998764322 11111111 112333433 3445555555589999999999
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
+++....++||++-|.++.--.....++||++||++|+||.++.+.
T Consensus 145 ------------------------------~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~---- 190 (325)
T KOG0649|consen 145 ------------------------------DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH---- 190 (325)
T ss_pred ------------------------------CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce----
Confidence 8888999999999999999866677899999999999999999765
Q ss_pred Cceeeece----eeecc-CcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 295 SIEEVGSS----VLYGH-NARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 295 ~~~~i~~~----~~~~h-~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.+.+.++ .+..| ...|.+++.+...++.|+ ...+.+|.+ ..++...+.-. + ++..+.|..| .++.+|.
T Consensus 191 -v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpip-a-~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 191 -VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIP-A-RVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred -eEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecc-c-ceeEeeeecc--eEEEecc
Confidence 3333221 22233 345778888888888766 457899999 55666665433 3 4778888765 5788888
Q ss_pred CCCEEEEEcCC
Q 001391 369 DSAIKVHQFQA 379 (1088)
Q Consensus 369 Dg~I~iwd~~~ 379 (1088)
.+.|.-|.+.+
T Consensus 265 g~~v~~~~l~G 275 (325)
T KOG0649|consen 265 GNHVQSYTLNG 275 (325)
T ss_pred ccceeeeeecc
Confidence 88899998865
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=149.62 Aligned_cols=261 Identities=15% Similarity=0.212 Sum_probs=165.3
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
.++..|.+.|+.++|+|-...|++++.|+++++|++...........+++ +++.+|.++|.|+++. +..+++|+.|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi--~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPI--LTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeee--EEEecccCceEEEEecCCceEEEeeccC
Confidence 36778999999999999999999999999999999954332233334555 4999999999999998 7899999999
Q ss_pred CcEEEEcCC--C---------ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCC
Q 001391 328 CTCRVWGSD--G---------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG 396 (1088)
Q Consensus 328 g~i~vWd~~--~---------~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1088)
|+|+.|++. . .....+.+|.+ .||.+++++....|++++.||++++|+.......++....
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~------- 437 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK------- 437 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCccccCCcc-------
Confidence 999999651 1 23456889998 6999999999999999999999999998553322222111
Q ss_pred CcceEEeeeCCCccceeeccCCCCceEEEEeccCC--eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCC
Q 001391 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS 474 (1088)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~--~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 474 (1088)
..++..++.+..-. ..++.-..+ .+.+.+.....-..++.... .+.. .....
T Consensus 438 ---------------------e~g~Plsvd~~ss~~a~~~~s~~~~---~~~~~~~ev~s~~~~~~s~~-~~~~-~~~~~ 491 (577)
T KOG0642|consen 438 ---------------------EHGYPLSVDRTSSRPAHSLASFRFG---YTSIDDMEVVSDLLIFESSA-SPGP-RRYPQ 491 (577)
T ss_pred ---------------------ccCCcceEeeccchhHhhhhhcccc---cccchhhhhhhheeeccccC-CCcc-cccCc
Confidence 01122222222111 111111111 11111111111001100000 0000 00000
Q ss_pred CCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCC
Q 001391 475 NEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (1088)
Q Consensus 475 ~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~ 554 (1088)
.+...+-+..++.+++.+|+.|++++..++......... .....+ .++.++|-+|.+++.|+.+++|.+..
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-------~~svts--lai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-------KDSVTS--LAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccccchheeec-------cceecc--eeecCCCceEEeecCCceeehhhccc
Confidence 001122344588999999999999998877654322211 111112 45779999999999999999999864
Q ss_pred C
Q 001391 555 P 555 (1088)
Q Consensus 555 ~ 555 (1088)
.
T Consensus 563 k 563 (577)
T KOG0642|consen 563 K 563 (577)
T ss_pred h
Confidence 3
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-14 Score=161.54 Aligned_cols=212 Identities=20% Similarity=0.335 Sum_probs=159.8
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
..+.++.+.+|...|+|+.|.. .|.++++|+.|..++||..+++.++....+++.. +..++. +.+..++++++
T Consensus 179 kmk~ikrLlgH~naVyca~fDr---tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d-itdlav---s~~n~~iaaaS 251 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDR---TGRYIITGSDDRLVKIWSMETARCLASCRGHSGD-ITDLAV---SSNNTMIAAAS 251 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeecc---ccceEeecCccceeeeeeccchhhhccCCCCccc-cchhcc---chhhhhhhhcc
Confidence 3667888999999999999998 9999999999999999999999999999888764 233333 45677899999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.|..|++|.+. .+.++..+.||++.|++++|+|-. +.+.||++
T Consensus 252 ~D~vIrvWrl~---------------------------------~~~pvsvLrghtgavtaiafsP~~----sss~dgt~ 294 (1113)
T KOG0644|consen 252 NDKVIRVWRLP---------------------------------DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTC 294 (1113)
T ss_pred cCceEEEEecC---------------------------------CCchHHHHhccccceeeeccCccc----cCCCCCce
Confidence 99999999998 788899999999999999999965 78899999
Q ss_pred EEEEcCCC-cccCCC-----Cceeeec--------e--------eeeccC--------cceEEEEEC---CCEEEEEeCC
Q 001391 281 RIWEVRAE-YWKDSD-----SIEEVGS--------S--------VLYGHN--------ARVWDCCLT---DSFIITAGED 327 (1088)
Q Consensus 281 ~iWd~~~~-~~~~~~-----~~~~i~~--------~--------~~~~h~--------~~I~~v~~~---~~~l~sg~~D 327 (1088)
++||.+-. ..-.+. ....+.. . ....|. ..+.-+.++ ..+.+++-.+
T Consensus 295 ~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 295 RIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred EeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeee
Confidence 99998721 100000 0000000 0 000111 111111111 2455566667
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEc
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~ 377 (1088)
..+++|++ +|..++.+.+|.. .+..+.++|-. ....+++.||...|||+
T Consensus 375 ~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred eEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 78999999 8999999999988 69999999954 46678999999999998
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=139.66 Aligned_cols=124 Identities=24% Similarity=0.425 Sum_probs=106.7
Q ss_pred EEeCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeC
Q 001391 251 RLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGE 326 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~ 326 (1088)
.+.||+++|..++|+|- ...++|||+|.+|.+|.+..+...... .+++. .+.||..+|--++|+ .+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l-tepvv--~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL-TEPVV--ELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-ccceE--EEeecceeEEEEeecccchhhHhhccC
Confidence 35699999999999994 467899999999999999876542111 13333 889999999999999 589999999
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|.+|.+|++ +|+.+-++. |.+ -|+++.|+.||.+|+|.+.|..|+|||.+.
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CceEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCC
Confidence 999999999 888888887 887 699999999999999999999999999954
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=133.60 Aligned_cols=296 Identities=14% Similarity=0.125 Sum_probs=182.4
Q ss_pred eeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 302 SVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+.+.+|.+.++++.|. +.+|++|..-|.+.+|++ +.+.+..++.+....|+.+...|+ ..|.+-++|+.+.+|++..
T Consensus 8 fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4778999999999998 778999999999999999 566677778666668999998887 4689999999999999954
Q ss_pred CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc-----CC----eEEEEecCCeEEEEEeccC
Q 001391 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-----ED----TLYIATNHGYLYHTKLCDM 450 (1088)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-----~~----~ll~~t~~g~i~~~~~~~~ 450 (1088)
... ..+.++. ++++.|.+ +. .++..-..|.- +....+.
T Consensus 87 s~~---------------i~i~Si~-----------------~nslgFCrfSl~~~~k~~eqll~yp~rgsd-e~h~~D~ 133 (323)
T KOG0322|consen 87 SAF---------------ISIHSIV-----------------VNSLGFCRFSLVKKPKNSEQLLEYPSRGSD-ETHKQDG 133 (323)
T ss_pred cce---------------EEEeeee-----------------ccccccccceeccCCCcchhheecCCcccc-hhhhhcc
Confidence 211 0011110 11111111 00 11111111110 0001111
Q ss_pred CcceeEEeee---ecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeee-----ccccc
Q 001391 451 DSVNWNKILQ---VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS-----AGIER 522 (1088)
Q Consensus 451 ~~~~~~~~~~---~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~-----~~~~~ 522 (1088)
....-..+.. ....+.+++.+.... +...-+++.|-++|.+.+|+++.+... +.+...+. ..+..
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~-----c~s~~lllaGyEsghvv~wd~S~~~~~--~~~~~~~kv~~~~ash~q 206 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHA-----CGSTFLLLAGYESGHVVIWDLSTGDKI--IQLPQSSKVESPNASHKQ 206 (323)
T ss_pred CccceeEccCchhccccCceeeeecccc-----ccceEEEEEeccCCeEEEEEccCCcee--eccccccccccchhhccC
Confidence 1100001111 112344555553221 334467888999999999999986322 11111111 11222
Q ss_pred eeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCC
Q 001391 523 QLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRG 602 (1088)
Q Consensus 523 ~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg 602 (1088)
..++.- +.+....=++|+.+..+..|.+..... . +.++.+.... .-.|..+.+-||+++||+++-||
T Consensus 207 pvlsld--yas~~~rGisgga~dkl~~~Sl~~s~g--s--------lq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 207 PVLSLD--YASSCDRGISGGADDKLVMYSLNHSTG--S--------LQIRKEITLK-NPGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred cceeee--echhhcCCcCCCccccceeeeeccccC--c--------ccccceEEec-CCCccceEEccCCcEEeecccCC
Confidence 233321 222223345678888999999875421 1 1122221111 22377788889999999999999
Q ss_pred cEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEe
Q 001391 603 NLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 603 ~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
.|+||+.. .+.|+.+++-|. ..|.+++|+ ++...++.+|.|+.|.+|++
T Consensus 274 RiRVyswr-------------tl~pLAVLkyHs--agvn~vAfs---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWR-------------TLNPLAVLKYHS--AGVNAVAFS---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEec-------------cCCchhhhhhhh--cceeEEEeC---CCCchhhhccCCceEEeeec
Confidence 99999866 677888888666 589999999 56688999999999999986
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-12 Score=130.42 Aligned_cols=223 Identities=13% Similarity=0.125 Sum_probs=169.8
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCC---eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
..||+|.+|+ +| +..+|.+.. ..|.||..... +..+++..|.. .|.+|+|+ |..+ +++.
T Consensus 10 ~~pitchAwn--~d----rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWa-------p~sn---rIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWN--SD----RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWA-------PKSN---RIVT 72 (361)
T ss_pred cCceeeeeec--CC----CceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeec-------CCCC---ceeE
Confidence 4799999999 88 888998885 79999998765 46788888776 79999999 4442 5666
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--- 169 (1088)
++.|+...||....+. ..++.-.+..|+...+++.|+| ..+.+|+|+.-..|.||-++....
T Consensus 73 cs~drnayVw~~~~~~------------~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGG------------TWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred ccCCCCccccccCCCC------------eeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEecccceeh
Confidence 6779999999985332 2556666778899999999999 999999999999999998875433
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
.+.++.+.++.+.++.++ +++.++++|+.|+..+|+..--...... ...++=|... .-+..+
T Consensus 138 sKhikkPirStv~sldWh---pnnVLlaaGs~D~k~rVfSayIK~Vdek----pap~pWgsk~-----------PFG~lm 199 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWH---PNNVLLAAGSTDGKCRVFSAYIKGVDEK----PAPTPWGSKM-----------PFGQLM 199 (361)
T ss_pred hhhhCCccccceeeeecc---CCcceecccccCcceeEEEEeeeccccC----CCCCCCccCC-----------cHHHHH
Confidence 345667778888888885 6688999999999999998652111111 0111111100 124455
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
.++....++|..+.|+|+|..|+-.+.|.++.+=|.....
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 5555677899999999999999999999999999887753
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-12 Score=144.85 Aligned_cols=276 Identities=16% Similarity=0.120 Sum_probs=186.5
Q ss_pred CeEEEEECCCC-eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 44 SQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 44 ~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
+.+.||+++.. ..-..+.. ...|.+++|+|.. | .++++ ..+|+|.+||+....... .
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~----p------~ll~gG~y~GqV~lWD~~~~~~~~---------~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFD----P------NLLAGGCYNGQVVLWDLRKGSDTP---------P 280 (555)
T ss_pred ceEEEEecCCCCCceEEEec--CCceeEEEeccCC----c------ceEEeeccCceEEEEEccCCCCCC---------C
Confidence 37999999876 33333333 3369999999541 2 34444 449999999998654110 1
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE---e--cc------CCceeEEEEeeecCC
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE---V--HS------PERCLLYSMKLWGDN 190 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~---~--~~------~~~~~~~s~~~~~~s 190 (1088)
...-.....|.+.++.+.|.... .+.-+++++.||.|..|+++.-..... + .. .......++.|...
T Consensus 281 s~ls~~~~sh~~~v~~vvW~~~~-~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~- 358 (555)
T KOG1587|consen 281 SGLSALEVSHSEPVTAVVWLQNE-HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT- 358 (555)
T ss_pred cccccccccCCcCeEEEEEeccC-CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-
Confidence 12223345789999999998732 235689999999999998865332110 0 01 11233456666544
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
+...++.|+.+|.|.--.....+.... ...+....+..|.+.|.++.++|=+..
T Consensus 359 -~p~~FiVGTe~G~v~~~~r~g~~~~~~-------------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 359 -DPNHFIVGTEEGKVYKGCRKGYTPAPE-------------------------VSYKGHSTFITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred -CCceEEEEcCCcEEEEEeccCCccccc-------------------------ccccccccccccCcceEeeecCCCccc
Confidence 445799999999998744331000000 011334456679999999999997766
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC---CCceeEEEc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIK 344 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~---~~~~~~~~~ 344 (1088)
++..+.|.+|+||...... .++ +.+..+...+++++|+ +..|+++..||.+.+||+ ...++.+..
T Consensus 413 ~fls~gDW~vriWs~~~~~-------~Pl--~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIA-------SPL--LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred eeeeeccceeEeccccCCC-------Ccc--hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 5555559999999977321 222 2555677779999999 578999999999999999 344555555
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+.. ....+.++++|+.|++|...|++.+|++.
T Consensus 484 ~~~~-~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 VCSP-ALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccc-ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 4533 56778888889999999999999999995
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.3e-12 Score=147.76 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=121.3
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
|+. .|..+.+++.|..... ..+. .++++.++++|+.||+|++|+.+.-. +..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~-k~a~--s~~~~s~FvsgS~DGtVKvW~~~k~~--~~~---------------------- 1085 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVI-KLAV--SSEHTSLFVSGSDDGTVKVWNLRKLE--GEG---------------------- 1085 (1431)
T ss_pred CCc-cceEeehhhhcccccc-ceee--cCCCCceEEEecCCceEEEeeehhhh--cCc----------------------
Confidence 443 4667777777665544 3332 25667899999999999999987111 100
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE-EEC---
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC-CLT--- 317 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v-~~~--- 317 (1088)
...+...+..--...+.++.+.+.+..+|.++.||.|++.++......... ........... .+.+.++ +|.
T Consensus 1086 --~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~-~~~~ri~n~~~-~g~vv~m~a~~~~~ 1161 (1431)
T KOG1240|consen 1086 --GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRV-ATQVRIPNLKK-DGVVVSMHAFTAIV 1161 (1431)
T ss_pred --ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccce-eeeeecccccC-CCceEEeecccccc
Confidence 022333334435678999999999999999999999999998763210000 01111001111 2223333 333
Q ss_pred CC-EEEEEeCCCcEEEEcC-CCceeEE--EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 318 DS-FIITAGEDCTCRVWGS-DGKQLKM--IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 318 ~~-~l~sg~~Dg~i~vWd~-~~~~~~~--~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.. .++-+...+.|..||. ....+.. ....+| .|++++.+|.+.+++.|...|.+.+||++-
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred cceeEEEEEeccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 34 7788888899999998 3222222 223345 599999999999999999999999999964
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=146.83 Aligned_cols=298 Identities=15% Similarity=0.192 Sum_probs=198.1
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC--ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
.-..+.|+| =...++++...-.|++||.+.++.+..+..+. ...+..+.+.. ..|..++.+|+.||.|+||+--
T Consensus 1066 ~pk~~~~hp---f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liN-e~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHP---FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELIN-EQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecC---CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeec-ccchhheeeeccCceEEEeccc
Confidence 345677887 66688888877889999999999887776433 33455565543 3567789999999999999754
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---e----CCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---V----GHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~----gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
... |. +.+.+... . +-.+.=.-+.|-....+|+++++-+.|||||
T Consensus 1142 ~~~-------------------------~~---~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1142 ADK-------------------------WK---KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred ccc-------------------------cC---CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence 100 00 11111111 1 1111114467877778888888899999999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCC----CceeEEEcccCCC-CeEEEEE
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGR-GIWRCLY 356 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~----~~~~~~~~~h~~~-~V~~l~~ 356 (1088)
..... .+.- ...+-...|+++.-+ ++.|+.|..||.+|+||.. ...+...+.|... +|..+.+
T Consensus 1194 a~~E~--------~~~d-iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1194 AHKEQ--------VVAD-IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred cccce--------eEee-cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 98843 2221 333445556766654 6899999999999999982 2356777888762 3889999
Q ss_pred cCCCCE-EEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE
Q 001391 357 DSLSSL-LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1088)
Q Consensus 357 ~~dg~~-l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~ 435 (1088)
.++|-. |++|+.||.|++||++.....++ +++. ..++ -++.++++...+...+++
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~---------------~~iv--------~~~~-yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETF---------------LTIV--------AHWE-YGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCccccc---------------ceee--------eccc-cCccceeeeeccCCCeee
Confidence 887764 99999999999999975321111 1110 0010 012478888888888888
Q ss_pred EecCCeEEEEEeccCCcc--eeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCC
Q 001391 436 ATNHGYLYHTKLCDMDSV--NWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~ 504 (1088)
+++.+.|..|++....-. +.....-+.....+.|+.+++.. -++|.|..|..|.||.....
T Consensus 1321 sGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~--------~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1321 SGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR--------LLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchh--------HhhhhccCCceEEEeecCCc
Confidence 877777776655443221 11122334445667888887654 67899999999999987654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-11 Score=127.67 Aligned_cols=241 Identities=15% Similarity=0.171 Sum_probs=166.9
Q ss_pred CceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee--CCcceEEEEeccc
Q 001391 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF--HGIRLHGISCNFI 76 (1088)
Q Consensus 5 ~i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~--~~~~V~~i~~s~~ 76 (1088)
.+++.+.+++. +..+|.+|.+. ++.|+++-...|+|||+.+-++++++..- +..++.++.++
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--------r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n-- 138 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPTSILAVRMN--------RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPN-- 138 (391)
T ss_pred eEEEEEcccCceEEEEecCCceEEEEEc--------cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccC--
Confidence 36677777665 56778899998 55677776666999999999999999864 33335444444
Q ss_pred ccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 77 NCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 77 ~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
+++ -++|.=+ .|.|.|||... .+.+..+..|.+.+-+++|++ +|.+|||+
T Consensus 139 -----~~n----~ylAyp~s~t~GdV~l~d~~n---------------l~~v~~I~aH~~~lAalafs~---~G~llATA 191 (391)
T KOG2110|consen 139 -----NAN----CYLAYPGSTTSGDVVLFDTIN---------------LQPVNTINAHKGPLAALAFSP---DGTLLATA 191 (391)
T ss_pred -----CCC----ceEEecCCCCCceEEEEEccc---------------ceeeeEEEecCCceeEEEECC---CCCEEEEe
Confidence 444 4666644 58999999884 678888899999999999999 99999999
Q ss_pred EcCCc-EEEEEcCCCceEEEeccCCc-eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 154 CSDNS-IRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 154 s~Dg~-V~iWd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
+..|+ |||+.+.+|+.+.++..+.. ..+|+++| ++++.+|++.+..++|++|++......+........+..+..
T Consensus 192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F---s~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~ 268 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF---SPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKV 268 (391)
T ss_pred ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE---CCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchh
Confidence 99997 68999999999999986654 56888887 688889999999999999999843311111000000011100
Q ss_pred C-------CCceeEecccccceeeeEEEeCCCC---CEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 232 S-------DFKCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 232 ~-------~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
+ ..+.-..|+ ..+.....+.... .+..+.-.+...++..++.||.+..|.+...
T Consensus 269 sk~~~sylps~V~~~~~---~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 269 SKAATSYLPSQVSSVLD---QSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhhcchhhhhhhh---hccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 0 011111122 2223333332222 2333443457789999999999999998764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-11 Score=133.27 Aligned_cols=277 Identities=14% Similarity=0.149 Sum_probs=166.6
Q ss_pred EEEEEeCCeEEEEECCC-Ce--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCC
Q 001391 37 FLLAGSGSQVLLYDLEA-GT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 37 ~laag~d~~I~vwd~~t-g~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~ 112 (1088)
|++.+.++.|++||+.+ |+ .+..+.. .+ ..+.++++ |+++ .+.++. .++.|.+|+++...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~-~~~~l~~s-------pd~~---~lyv~~~~~~~i~~~~~~~~g---- 68 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PG-QVQPMVIS-------PDKR---HLYVGVRPEFRVLSYRIADDG---- 68 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CC-CCccEEEC-------CCCC---EEEEEECCCCcEEEEEECCCC----
Confidence 44545689999999964 43 4455543 22 47888999 7773 444443 47899999997321
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCC-c---eEEEeccCCceeEEEEeee
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNS-S---IILEVHSPERCLLYSMKLW 187 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~-~---~~~~~~~~~~~~~~s~~~~ 187 (1088)
.++.+.... ..+....++|+| ++++|++++ .++.|.+|++.+. . .+..+.... ....+.+
T Consensus 69 --------~l~~~~~~~-~~~~p~~i~~~~---~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~- 133 (330)
T PRK11028 69 --------ALTFAAESP-LPGSPTHISTDH---QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE--GCHSANI- 133 (330)
T ss_pred --------ceEEeeeec-CCCCceEEEECC---CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC--cccEeEe-
Confidence 122222222 223467899999 999888775 4889999999742 2 222222211 1233333
Q ss_pred cCCCCCcEEE-EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC
Q 001391 188 GDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1088)
Q Consensus 188 ~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp 266 (1088)
+|++.+++ +...++.|.+||+.+...... .......... ......++|+|
T Consensus 134 --~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~--------------------------~~~~~~~~~~-g~~p~~~~~~p 184 (330)
T PRK11028 134 --DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA--------------------------QEPAEVTTVE-GAGPRHMVFHP 184 (330)
T ss_pred --CCCCCEEEEeeCCCCEEEEEEECCCCcccc--------------------------cCCCceecCC-CCCCceEEECC
Confidence 57787775 455679999999972110000 0000011111 23467899999
Q ss_pred CCCEEEEEEC-CCcEEEEEcCCCcccCCCCceeeeceeee----ccCcceEEEEEC--CCEEEEEeC-CCcEEEEcC--C
Q 001391 267 CGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLY----GHNARVWDCCLT--DSFIITAGE-DCTCRVWGS--D 336 (1088)
Q Consensus 267 ~g~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~----~h~~~I~~v~~~--~~~l~sg~~-Dg~i~vWd~--~ 336 (1088)
++++++++.. +++|.+|++..... ..+.+...... .+......+.++ +.+++++.+ +++|.+|++ +
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHG----EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCC----CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 9999988766 89999999974210 01222211111 111223357777 567777754 789999998 3
Q ss_pred CceeEEEccc--CCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 001391 337 GKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1088)
Q Consensus 337 ~~~~~~~~~h--~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~ 378 (1088)
+..+. +..+ .+...+.+.++|+|++|+++.. +++|.+|+++
T Consensus 261 ~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 261 GSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 32221 1111 1123568899999999988775 8999999884
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-10 Score=131.88 Aligned_cols=263 Identities=15% Similarity=0.182 Sum_probs=163.2
Q ss_pred CCCCCceEEecCC-Cc--------eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECC-CCee--EEEEeeeCCc
Q 001391 1 MGKKDLSEWRLDV-GQ--------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLE-AGTL--IRPFQVFHGI 66 (1088)
Q Consensus 1 ~~d~~i~iWdl~~-g~--------~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~-tg~~--~~~~~~~~~~ 66 (1088)
.+|+.|++||+.+ ++ ..+....++++ |+ +++|+++. ++.|.+|++. +|+. +..... ..
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~s--pd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~--~~ 80 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVIS--PD----KRHLYVGVRPEFRVLSYRIADDGALTFAAESPL--PG 80 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEEC--CC----CCEEEEEECCCCcEEEEEECCCCceEEeeeecC--CC
Confidence 3688999999964 33 22446789999 99 88887765 4899999986 4443 222222 22
Q ss_pred ceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
....++|+ |+++ .++++ .+++.|.+|+++.... ..+.+..+.+ .....+++++|
T Consensus 81 ~p~~i~~~-------~~g~---~l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~-~~~~~~~~~~p--- 135 (330)
T PRK11028 81 SPTHISTD-------HQGR---FLFSASYNANCVSVSPLDKDGI-----------PVAPIQIIEG-LEGCHSANIDP--- 135 (330)
T ss_pred CceEEEEC-------CCCC---EEEEEEcCCCeEEEEEECCCCC-----------CCCceeeccC-CCcccEeEeCC---
Confidence 46789998 7773 44444 3489999999974320 0122222222 23467789999
Q ss_pred CCCEEEEE-EcCCcEEEEEcCCCceEEE-----eccCCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccC
Q 001391 146 GNRSLAIG-CSDNSIRVWDISNSSIILE-----VHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 146 d~~~lasg-s~Dg~V~iWd~~~~~~~~~-----~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~ 218 (1088)
++++++++ ..++.|.+||+.+...+.. ...+.......+.+ ++++.++++... +++|.+|++....
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~---~pdg~~lyv~~~~~~~v~v~~~~~~~---- 208 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF---HPNQQYAYCVNELNSSVDVWQLKDPH---- 208 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE---CCCCCEEEEEecCCCEEEEEEEeCCC----
Confidence 99877554 5579999999976332211 11111222334554 588888887766 8999999997110
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeC------CCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCccc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWK 291 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g------h~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~~~~ 291 (1088)
+ ..+.+..+.. +......+.++|++++++++.. ++.|.+|++.....
T Consensus 209 ----------------~---------~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~- 262 (330)
T PRK11028 209 ----------------G---------EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS- 262 (330)
T ss_pred ----------------C---------CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-
Confidence 0 1112222211 1223456899999999888754 78999999965321
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-CCcEEEEcC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS 335 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg~i~vWd~ 335 (1088)
..+.++. ...+ ...+.+.++ +.+|+++.. +++|.+|++
T Consensus 263 ---~~~~~~~-~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 263 ---VLSFEGH-QPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ---eEEEeEE-Eecc--ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 0122220 1111 234567777 677776665 899999987
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-13 Score=145.29 Aligned_cols=265 Identities=16% Similarity=0.204 Sum_probs=202.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
||. -+.|+ .+ |++|+.|. -|.|--+|+.+++++..+.+-+ .|..+.|. .+. .++|++..
T Consensus 131 GPY-~~~yt--rn----GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~L-------Hne----q~~AVAQK 190 (545)
T KOG1272|consen 131 GPY-HLDYT--RN----GRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFL-------HNE----QFFAVAQK 190 (545)
T ss_pred CCe-eeeec--CC----ccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhh-------cch----HHHHhhhh
Confidence 444 46777 66 88888888 5999999999999999998755 59999998 553 79999999
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.+.|||-. +..++.++.| ..|..+.|.| .--+|++++..|.++.-|+.+|+.+..+...
T Consensus 191 ~y~yvYD~~----------------GtElHClk~~-~~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~ 250 (545)
T KOG1272|consen 191 KYVYVYDNN----------------GTELHCLKRH-IRVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASIRTG 250 (545)
T ss_pred ceEEEecCC----------------CcEEeehhhc-Cchhhhcccc---hhheeeecccCCceEEEeechhhhhHHHHcc
Confidence 999999965 4556666655 4589999999 8889999999999999999999998877644
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
.+. +..| ..+|-...+-.|...|+|.+|... ...++..+..|.
T Consensus 251 ~G~-~~vm---~qNP~NaVih~GhsnGtVSlWSP~---------------------------------skePLvKiLcH~ 293 (545)
T KOG1272|consen 251 AGR-TDVM---KQNPYNAVIHLGHSNGTVSLWSPN---------------------------------SKEPLVKILCHR 293 (545)
T ss_pred CCc-cchh---hcCCccceEEEcCCCceEEecCCC---------------------------------CcchHHHHHhcC
Confidence 332 1122 236777788899999999999998 778888889999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS- 335 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~- 335 (1088)
++|.+|++.++|.+++|++.|+.++|||++.-.. +. +... .-....++++..-++..+....+.+|.-
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------l~--t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------LH--TYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDA 362 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccc--------cc--eeec-CCCccccccccccceeeecCCeeeeehhh
Confidence 9999999999999999999999999999998422 21 2222 3345678888655566666678999975
Q ss_pred -CCc--eeEEEcccC-CCCeEEEEEcCCCCEEEEEeCCC
Q 001391 336 -DGK--QLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 336 -~~~--~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
.+. .-..+-.|. +.+|..+.|.|-...|-.|..-|
T Consensus 363 ~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 363 LKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 322 111122221 23689999999776666665555
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=139.52 Aligned_cols=312 Identities=15% Similarity=0.143 Sum_probs=211.8
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
++.+...|.+|.+.|..|.|+. .|..|++|+.|..|.+||...+.....+...+...++...|.+++ +...+++.+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s-~d~ti~~~s 206 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS-GDRTIVTSS 206 (559)
T ss_pred HhhhhhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-CCcCceecc
Confidence 4667788999999999999999 999999999999999999999999888887777778888888775 456789999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCc
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRS 279 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~ 279 (1088)
.||.+++=.+.... .......+..|.+.|..++.-|+.. .|.|++.|+.
T Consensus 207 ~dgqvr~s~i~~t~------------------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 207 RDGQVRVSEILETG------------------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV 256 (559)
T ss_pred ccCceeeeeecccc------------------------------ceecceecccccCccceeeecCCCCCcccccccccc
Confidence 99999987765110 1222445668999999999999764 5899999999
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCc---ceEEEEEC---CCEEEEEeCCCcEEEEcCC---C----ceeEEEccc
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLT---DSFIITAGEDCTCRVWGSD---G----KQLKMIKEH 346 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~---~I~~v~~~---~~~l~sg~~Dg~i~vWd~~---~----~~~~~~~~h 346 (1088)
+.-.|++.... ...+. ....+.. ...+++.. ...+++|+.|-.+|+||.. . ..+.++..|
T Consensus 257 v~~~Dlr~~~p-----a~~~~--cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~ 329 (559)
T KOG1334|consen 257 VFHIDLRQDVP-----AEKFV--CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH 329 (559)
T ss_pred eeeeeeccCCc-----cceee--eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc
Confidence 99999987644 12221 2222333 34566665 4689999999999999972 1 123333322
Q ss_pred C-----CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee-CCCccceeeccCC--
Q 001391 347 I-----GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI-PNFSEQIRLTDSK-- 418 (1088)
Q Consensus 347 ~-----~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 418 (1088)
+ .-.|++++|+.++.-|.+.-.|-.|.++.-....-.. ...... ....+.+ +.+|
T Consensus 330 hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~---------------p~~~s~~~~~~k~v--YKGHrN 392 (559)
T KOG1334|consen 330 HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE---------------PDPSSPREQYVKRV--YKGHRN 392 (559)
T ss_pred cccccCcccceeEEecCCccceeeeecccceEEeccccccCCC---------------CCCCcchhhccchh--hccccc
Confidence 2 1259999999777666666677778888542211000 000000 0000111 2333
Q ss_pred CCceEEEEecc-CCeEEEE-ecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCE
Q 001391 419 SEYVRCLHLTS-EDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNM 496 (1088)
Q Consensus 419 ~~~V~~l~~s~-~~~ll~~-t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I 496 (1088)
...|+++.|.. ...++++ +..|.|+ +|+..+.+....+.+... -|.|+.-+ |...+||+.+-|..|
T Consensus 393 ~~TVKgVNFfGPrsEyVvSGSDCGhIF---iW~K~t~eii~~MegDr~-VVNCLEpH--------P~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 393 SRTVKGVNFFGPRSEYVVSGSDCGHIF---IWDKKTGEIIRFMEGDRH-VVNCLEPH--------PHLPVLASSGIDHDV 460 (559)
T ss_pred ccccceeeeccCccceEEecCccceEE---EEecchhHHHHHhhcccc-eEeccCCC--------CCCchhhccCCccce
Confidence 34588888765 3455554 5568899 555554443334455433 56665543 345899999999999
Q ss_pred EEEEEc
Q 001391 497 TIVRVV 502 (1088)
Q Consensus 497 ~iw~~~ 502 (1088)
+||...
T Consensus 461 KIWTP~ 466 (559)
T KOG1334|consen 461 KIWTPL 466 (559)
T ss_pred eeecCC
Confidence 999763
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-11 Score=141.95 Aligned_cols=268 Identities=16% Similarity=0.166 Sum_probs=172.6
Q ss_pred EECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec
Q 001391 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1088)
Q Consensus 49 wd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l 128 (1088)
|+. .|.+++.+..|.. .|..++.++ +++. ..+.++.||+|++|+...-..... ..+...++
T Consensus 1034 W~p-~G~lVAhL~Ehs~-~v~k~a~s~------~~~s---~FvsgS~DGtVKvW~~~k~~~~~~--------s~rS~lty 1094 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS-AVIKLAVSS------EHTS---LFVSGSDDGTVKVWNLRKLEGEGG--------SARSELTY 1094 (1431)
T ss_pred CCc-cceEeehhhhccc-cccceeecC------CCCc---eEEEecCCceEEEeeehhhhcCcc--------eeeeeEEE
Confidence 664 4789999998887 466888874 3431 444445599999999885331111 12333344
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC--Cce-----EEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN--SSI-----ILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~--~~~-----~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
......+.++.+.+ .++.+|+++.||.|++.+++. ... ...........+.+|...........|+.++.
T Consensus 1095 s~~~sr~~~vt~~~---~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~ 1171 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCG---NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD 1171 (1431)
T ss_pred eccCCceEEEEecc---CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe
Confidence 44567899999999 999999999999999999875 211 11111222222334432222222247888999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE--EeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR--LVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
.+.|..||.+ ......+ ..-..|.|++++.+|.+.++++|+..|.
T Consensus 1172 ~~~iv~~D~r---------------------------------~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1172 LSRIVSWDTR---------------------------------MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred ccceEEecch---------------------------------hhhhHHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence 9999999998 2222221 2233578999999999999999999999
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---C--CEEEEEeC--CCcEEEEcC-CCceeEEEcccCC---
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D--SFIITAGE--DCTCRVWGS-DGKQLKMIKEHIG--- 348 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~--~~l~sg~~--Dg~i~vWd~-~~~~~~~~~~h~~--- 348 (1088)
+.+||++-+ .++.. -..++..+|..+..+ + ...++++. .+.+-+|++ +|.+-..+-...+
T Consensus 1219 l~lWDLRF~--------~~i~s-w~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1219 LVLWDLRFR--------VPILS-WEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI 1289 (1431)
T ss_pred EEEEEeecC--------ceeec-ccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcc
Confidence 999999875 23321 333444666666654 3 56665554 678999999 5544333322100
Q ss_pred ---------------CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 349 ---------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 349 ---------------~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
-+.....+...+..+.+|+.|..|+.||....
T Consensus 1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 01122333344568999999999999999653
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=138.77 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=142.6
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
++.+.+.|.||++-|+|++|+. +|.+|++|+.|-.+.|||....+.+..+.......++++.|++.. +..+|++|.
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t-nnriv~sgA 114 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT-NNRIVLSGA 114 (758)
T ss_pred hcchhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC-CCeEEEecc
Confidence 3566778999999999999999 999999999999999999999999999988888889999998875 456899999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCc
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRS 279 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~ 279 (1088)
.|..|+++|+...+-.+...+ .....+.+..|...|..++-.|++ ..+-++++||+
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~-----------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHG-----------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred CcceEEEEecccccccccccC-----------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 999999999983221111110 234455667899999999999998 67899999999
Q ss_pred EEEEEcCCCcccCCC--CceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC
Q 001391 280 ARIWEVRAEYWKDSD--SIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~--~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~ 335 (1088)
++-+|++......+. ....+. ...+.--...|+..+ +.+|+.|+.|-..++||.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~--ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILV--NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeecccCCccCCccccccHHHH--HhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 999999874321110 011110 111111234567776 689999999999999995
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-10 Score=115.98 Aligned_cols=233 Identities=13% Similarity=0.181 Sum_probs=163.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.+..+.|. .|. ..|+.+.....++++.+.-. + ......-.-.|--+-|+
T Consensus 7 ti~~~~~N-------qd~----~~lsvGs~~Gyk~~~~~~~~--------------k-~~~~~~~~~~IvEmLFS----- 55 (391)
T KOG2110|consen 7 TINFIGFN-------QDS----TLLSVGSKDGYKIFSCSPFE--------------K-CFSKDTEGVSIVEMLFS----- 55 (391)
T ss_pred ceeeeeec-------cce----eEEEccCCCceeEEecCchH--------------H-hhcccCCCeEEEEeecc-----
Confidence 35556666 554 56666666778888877422 1 11111122345555554
Q ss_pred CCEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 147 NRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 147 ~~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
..++|..+.+. .+++.++..+..+..+.-+.. +.++++ +.+.|++.-.+. |+|+|+.
T Consensus 56 SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~--IL~Vrm-----Nr~RLvV~Lee~-IyIydI~------------- 114 (391)
T KOG2110|consen 56 SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS--ILAVRM-----NRKRLVVCLEES-IYIYDIK------------- 114 (391)
T ss_pred cceeEEEecCCCceEEEEEcccCceEEEEecCCc--eEEEEE-----ccceEEEEEccc-EEEEecc-------------
Confidence 36666666544 489999988888877765543 445554 345566554444 9999998
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEe---CCCCCEEEEEEcCCCCEEEE--EECCCcEEEEEcCCCcccCCCCceee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVS--VSDDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s--~s~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
..+.++++. .+...+.++++++.+.+++- ....|.|.+||..+. +.+
T Consensus 115 --------------------~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--------~~v 166 (391)
T KOG2110|consen 115 --------------------DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--------QPV 166 (391)
T ss_pred --------------------cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--------eee
Confidence 455555443 35556777777777778775 233589999999884 445
Q ss_pred eceeeeccCcceEEEEEC--CCEEEEEeCCCc-EEEEcC-CCceeEEEcccCC-CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 001391 300 GSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~-i~vWd~-~~~~~~~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~I~i 374 (1088)
. .+..|.+.+.+++|+ |.+|+|+++.|+ |||+.+ +|+.+.+|+.-.. -.|.+++|+|++++|++.+..++|.+
T Consensus 167 ~--~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 167 N--TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred e--EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence 4 677999999999998 899999999998 599999 8999998864322 24889999999999999999999999
Q ss_pred EEcCCCC
Q 001391 375 HQFQAFL 381 (1088)
Q Consensus 375 wd~~~~~ 381 (1088)
+.++...
T Consensus 245 FKL~~~~ 251 (391)
T KOG2110|consen 245 FKLEKVS 251 (391)
T ss_pred EEecccc
Confidence 9996543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=132.00 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=177.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee-ceeeeccCcceEEEEEC----CCEEEEEeCCC
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHNARVWDCCLT----DSFIITAGEDC 328 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~-~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg 328 (1088)
.|...|.++.|+.....+.+++++..+.-||+.+... +.+. +-.+......+...... ...++.++.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~------~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV------EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh------hhhhCCcccCCccccccccccCCCCCcceEEEEcCCc
Confidence 5677788999998887777777666666667665432 1110 00111000001111111 25788899999
Q ss_pred cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCC
Q 001391 329 TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (1088)
Q Consensus 329 ~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1088)
.+.+-+-.++..+.+..|.+ .|.+-.|+|||.-|+|+|.||.|++|.-.+-...+
T Consensus 86 kf~il~k~~rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt------------------------ 140 (737)
T KOG1524|consen 86 RFVILNKSARVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST------------------------ 140 (737)
T ss_pred eEEEecccchhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccchHHHH------------------------
Confidence 99999999999999999999 79999999999999999999999999975421111
Q ss_pred ccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc-CCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeE
Q 001391 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD-MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (1088)
Q Consensus 409 ~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~l 487 (1088)
+.....+|+|++|.|+..-++-++.++++.-.+.. ....+| ..+++-|.++++.+. .+++
T Consensus 141 ------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~W-----kAHDGiiL~~~W~~~--------s~lI 201 (737)
T KOG1524|consen 141 ------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRW-----RAHDGLVLSLSWSTQ--------SNII 201 (737)
T ss_pred ------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEE-----eccCcEEEEeecCcc--------ccce
Confidence 11223579999999998777778888876433322 223345 344677888887554 4899
Q ss_pred EEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCccc
Q 001391 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTN 567 (1088)
Q Consensus 488 a~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 567 (1088)
++|++|-..++||-....+-. ...++..+.+ .++.|+ +.++.++. .+++ +
T Consensus 202 ~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITS--va~npd-~~~~v~S~-nt~R---~--------------- 251 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQGANLFT--------SAAEEYAITS--VAFNPE-KDYLLWSY-NTAR---F--------------- 251 (737)
T ss_pred eecCCceeEEeecccCccccc--------CChhccceee--eeeccc-cceeeeee-eeee---e---------------
Confidence 999999999999976533211 1112222333 356676 33333322 2223 1
Q ss_pred ceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeC
Q 001391 568 NVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (1088)
Q Consensus 568 ~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~ 609 (1088)
.....+.|..++||+||..+++|...|.+.+=.+
T Consensus 252 --------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 252 --------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred --------cCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 1223567999999999999999999999775443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-10 Score=113.80 Aligned_cols=237 Identities=13% Similarity=0.157 Sum_probs=163.3
Q ss_pred CCceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECC-CCeeEEEEeeeC-CcceEEEEecc
Q 001391 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFH-GIRLHGISCNF 75 (1088)
Q Consensus 4 ~~i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~-tg~~~~~~~~~~-~~~V~~i~~s~ 75 (1088)
+.|.|||=...+ +..+|.+|.+. + ..|++.-...|.||... ..+.++.+.... ..+..+++-+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--r------~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~- 145 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--R------DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT- 145 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--C------CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCC-
Confidence 569999955554 56889999999 4 47888888899999987 557777766422 2223333322
Q ss_pred cccccCCCccceeeEEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 76 INCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 76 ~~~~~~~d~~~~~~~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
.+. .+||.=| -|.|+|-++.... ...-..++.|...|.|++++- +|..+||+
T Consensus 146 ------~~k----~~LafPg~k~GqvQi~dL~~~~-------------~~~p~~I~AH~s~Iacv~Ln~---~Gt~vATa 199 (346)
T KOG2111|consen 146 ------SNK----SLLAFPGFKTGQVQIVDLASTK-------------PNAPSIINAHDSDIACVALNL---QGTLVATA 199 (346)
T ss_pred ------CCc----eEEEcCCCccceEEEEEhhhcC-------------cCCceEEEcccCceeEEEEcC---CccEEEEe
Confidence 332 6677655 5899999998533 112245679999999999999 99999999
Q ss_pred EcCCc-EEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 154 CSDNS-IRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 154 s~Dg~-V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
|..|+ |||||..+|+.+.++..+ ....+|+++| +|+..+||+.+.-|++.||.++..+...... ..
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF---Sp~~s~LavsSdKgTlHiF~l~~~~~~~~~~---------SS 267 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF---SPNSSWLAVSSDKGTLHIFSLRDTENTEDES---------SS 267 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe---CCCccEEEEEcCCCeEEEEEeecCCCCcccc---------cc
Confidence 99998 799999999999998744 5678999988 8999999999999999999998322111100 00
Q ss_pred CCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
....+..+...-.+...+..+.-..+...-++|-.+...++..+.||+-+-+.+..
T Consensus 268 l~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~ 323 (346)
T KOG2111|consen 268 LSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDP 323 (346)
T ss_pred ccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEecc
Confidence 00001111111112233344444466778888888767777777888776555443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-10 Score=130.31 Aligned_cols=282 Identities=12% Similarity=0.106 Sum_probs=175.5
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce--EEE--
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILE-- 172 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--~~~-- 172 (1088)
..+.||++..+. .+...+ .-...|.+++|+|. +..+||.|..+|.|.+||+..+.. ...
T Consensus 222 ~~~~vW~~~~p~--------------~Pe~~~-~~~s~v~~~~f~p~--~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPN--------------TPELVL-ESPSEVTCLKFCPF--DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS 284 (555)
T ss_pred ceEEEEecCCCC--------------CceEEE-ecCCceeEEEeccC--CcceEEeeccCceEEEEEccCCCCCCCcccc
Confidence 479999998643 122222 23478999999993 667889999999999999987655 222
Q ss_pred -eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 173 -VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 173 -~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
........++.+.+... +.+.-+++++.||.|..|+.+--.. +.. +.. .. .......
T Consensus 285 ~~~~sh~~~v~~vvW~~~-~~~~~f~s~ssDG~i~~W~~~~l~~-P~e---------~~~----------~~-~~~~~~~ 342 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQN-EHNTEFFSLSSDGSICSWDTDMLSL-PVE---------GLL----------LE-SKKHKGQ 342 (555)
T ss_pred cccccCCcCeEEEEEecc-CCCCceEEEecCCcEeeeecccccc-chh---------hcc----------cc-ccccccc
Confidence 22223334445544443 3336789999999999998771100 000 000 00 0000000
Q ss_pred EeCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCC
Q 001391 252 LVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGED 327 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~D 327 (1088)
-..-...+++++|.+. -..++.|+++|.|.--+-...+.......+.. .....|.+.|.++.++ ...+++++ |
T Consensus 343 ~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~--~~~~~h~g~v~~v~~nPF~~k~fls~g-D 419 (555)
T KOG1587|consen 343 QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH--STFITHIGPVYAVSRNPFYPKNFLSVG-D 419 (555)
T ss_pred ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc--ccccccCcceEeeecCCCccceeeeec-c
Confidence 0122346888999884 46789999999987644333222000000111 2566788999999988 45666666 9
Q ss_pred CcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEee
Q 001391 328 CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIK 404 (1088)
Q Consensus 328 g~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1088)
.++++|.. ...++..+..+.. .|++++|+|-.. .++++..||.+.+||+...... .+.+.
T Consensus 420 W~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~---------------Pv~s~- 482 (555)
T KOG1587|consen 420 WTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE---------------PVLSQ- 482 (555)
T ss_pred ceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccC---------------Ccccc-
Confidence 99999997 4567777777776 599999999764 7788888999999999432111 11110
Q ss_pred eCCCccceeeccCCCCceEEEEeccCCeEEEE-ecCCeEEEEEec
Q 001391 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLC 448 (1088)
Q Consensus 405 ~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~-t~~g~i~~~~~~ 448 (1088)
.......+.+.+++.+++++. ...|.++.+++.
T Consensus 483 -----------~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 483 -----------KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred -----------cccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 011234567778887766655 566777766664
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=128.16 Aligned_cols=195 Identities=16% Similarity=0.142 Sum_probs=140.2
Q ss_pred EEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEE
Q 001391 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v 99 (1088)
.+|+|+ ++ +..|++|. ||++|||++.+-..+.....|++ .|.+++|| ||| .+|++-+....
T Consensus 148 k~vaf~--~~----gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS-------~dg----k~lasig~d~~ 209 (398)
T KOG0771|consen 148 KVVAFN--GD----GSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-EVKDLDFS-------PDG----KFLASIGADSA 209 (398)
T ss_pred eEEEEc--CC----CCEeeeccccceEEEEecCcchhhhhhHhhcC-ccccceeC-------CCC----cEEEEecCCce
Confidence 689999 87 89999976 89999999888887777777777 69999999 898 56666553399
Q ss_pred EEEEeccCCCCCCCCCCccccccceeeec--cCCCCcEEEEEEecccCCC-----CEEEEEEcCCcEEEEEcCCCceEE-
Q 001391 100 KLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGN-----RSLAIGCSDNSIRVWDISNSSIIL- 171 (1088)
Q Consensus 100 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~I~~v~f~p~~~d~-----~~lasgs~Dg~V~iWd~~~~~~~~- 171 (1088)
+||+.+... .++.. ..-+.....+.|+. |+ .+.+....-+.|+.|++.....-.
T Consensus 210 ~VW~~~~g~---------------~~a~~t~~~k~~~~~~cRF~~---d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~ 271 (398)
T KOG0771|consen 210 RVWSVNTGA---------------ALARKTPFSKDEMFSSCRFSV---DNAQETLRLAASQFPGGGVRLCDISLWSGSNF 271 (398)
T ss_pred EEEEeccCc---------------hhhhcCCcccchhhhhceecc---cCCCceEEEEEecCCCCceeEEEeeeeccccc
Confidence 999998642 11111 12234466778877 44 233334456677777765432211
Q ss_pred -Eec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 172 -EVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 172 -~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
... ......+.+++. +++|.++|.|+.||.|.|++.. +.+.
T Consensus 272 l~~~~~~~~~~siSsl~V---S~dGkf~AlGT~dGsVai~~~~---------------------------------~lq~ 315 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAV---SDDGKFLALGTMDGSVAIYDAK---------------------------------SLQR 315 (398)
T ss_pred cchhhhhhccCcceeEEE---cCCCcEEEEeccCCcEEEEEec---------------------------------eeee
Confidence 111 111223456665 7899999999999999999987 4444
Q ss_pred eEEE-eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 249 LFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 249 ~~~~-~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
++-. +.|...|+.+.|+|+.+++++.+.|..+.+..+.-
T Consensus 316 ~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 316 LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 4433 47999999999999999999999999999888765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-08 Score=114.63 Aligned_cols=491 Identities=12% Similarity=0.072 Sum_probs=250.7
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccccc---CCCccceeeEEEEEC-
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE---GSVSTRVTFEVALFG- 95 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~---~~d~~~~~~~la~~g- 95 (1088)
-.+++++ |. .++|-|+...|.|-|..+-+.+..+..|.. .|..+.|.|..... .|.. .+.++|+++
T Consensus 18 ~~A~Dw~--~~-----GLiAygshslV~VVDs~s~q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~--~~lliAsaD~ 87 (1062)
T KOG1912|consen 18 RNAADWS--PS-----GLIAYGSHSLVSVVDSRSLQLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS--SQLLIASADI 87 (1062)
T ss_pred ccccccC--cc-----ceEEEecCceEEEEehhhhhhhhccccCcc-ceeEEEeccCCCchhccCccc--cceeEEeccc
Confidence 4567777 64 689999999999999999999999998776 69999999874321 1111 125556655
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|.|.+||.... ..+..+..|.+.|.+++|-|...+. ..|+.-....++.+|+..+|+...+..
T Consensus 88 ~GrIil~d~~~~---------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 88 SGRIILVDFVLA---------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred cCcEEEEEehhh---------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 699999998853 3445566788999999999855455 456666678899999999999887765
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee----E
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL----F 250 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~----~ 250 (1088)
.... ++.+..+-++++ ..+..-+..|.+.+-+.- +... ++ ...+.++|-......... .
T Consensus 153 ys~~-iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l-----~~se------p~---~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 153 YSHE-ILSCFRVDPFDS--RHFCVLGSKGFVLSCKDL-----GLSE------PD---VPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred cCCc-ceeeeeeCCCCc--ceEEEEccCceEEEEecc-----CCCC------CC---CCceeEEEecCccchhhhhhhhh
Confidence 4332 344455544443 334444445666665543 0000 00 001111111000000000 0
Q ss_pred EEeCCCCC---------EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC
Q 001391 251 RLVGHEGS---------IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (1088)
Q Consensus 251 ~~~gh~~~---------V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~ 319 (1088)
.-..++.. ....+|+|.-+.++-...-+.+.++|++-.. ++....+......+.++--. ..
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~--------~l~vvpier~~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC--------CLAVVPIERGGAKFVDVLPDPRRD 287 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc--------eeEEEEeccCCcceeEeccCCCcc
Confidence 00001100 1124678876666666667789999987642 33211222222223333222 36
Q ss_pred EEEEEeCCCcEEEEcCCC-----------------ceeEEEcccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEcCCCC
Q 001391 320 FIITAGEDCTCRVWGSDG-----------------KQLKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 320 ~l~sg~~Dg~i~vWd~~~-----------------~~~~~~~~h~~~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~~~~~ 381 (1088)
.++..-.||.+.+|-... .+...+..-..-.+......|. ...++.--.+|...+|.+....
T Consensus 288 ~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 288 ALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred eEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 788999999999997621 1111111111101122222333 2334444457788899885422
Q ss_pred CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC------CeEEEEecCCeEEEEEeccCCccee
Q 001391 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE------DTLYIATNHGYLYHTKLCDMDSVNW 455 (1088)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------~~ll~~t~~g~i~~~~~~~~~~~~~ 455 (1088)
+...... ++.+. +..+.|... ..+...+.+|.. .... ..
T Consensus 368 i~~~~~s----~~iel------------------------~~pf~f~~~~~~v~k~~l~~LS~dg~h-----~sGs--~~ 412 (1062)
T KOG1912|consen 368 IHLDYRS----SSIEL------------------------VLPFDFNLSTKLVGKTSLISLSDDGSH-----SSGS--TC 412 (1062)
T ss_pred cCccccc----ccccc------------------------cccccccCceeehhhccccchhhcCCC-----CCCc--ee
Confidence 2110000 00000 000011100 011111111100 0000 00
Q ss_pred EEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCC
Q 001391 456 NKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535 (1088)
Q Consensus 456 ~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 535 (1088)
.++...+ +.......+.+ .....-..++|+|...|+|.++|+.++..............+-+-.....+..++...
T Consensus 413 ~~~~p~p---~~t~~~~~p~~-n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~ 488 (1062)
T KOG1912|consen 413 VRMRPMP---ELTKVENDPGG-NTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSH 488 (1062)
T ss_pred eecccCc---ccceeecCCCC-CccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecc
Confidence 0000000 00000111110 0001123689999999999999998876433221110000000000011111122111
Q ss_pred eEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 536 ~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
..=++++..+.+.+=|++.+.. +.+ + ........+|..+..|..++||+..-+|.-+-+||+..
T Consensus 489 ~n~~sg~vrN~l~vtdLrtGls-k~f--------R---~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 489 VNSASGGVRNDLVVTDLRTGLS-KRF--------R---GLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred ccccccceeeeEEEEEcccccc-ccc--------c---cCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 1112455556777888886642 111 1 00123467899999999999999999999999999864
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-10 Score=116.04 Aligned_cols=334 Identities=16% Similarity=0.187 Sum_probs=200.8
Q ss_pred EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEE-EEECCCEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV-ALFGEKRVKL 101 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l-a~~gd~~v~i 101 (1088)
.+|| |+ ++|+|+.++-.+.|-|..+-++++.|...+ +|.-|.|. .|. ...+ +.+-++.|.+
T Consensus 14 c~fS--p~----g~yiAs~~~yrlviRd~~tlq~~qlf~cld--ki~yieW~-------ads---~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFS--PC----GNYIASLSRYRLVIRDSETLQLHQLFLCLD--KIVYIEWK-------ADS---CHILCVAYKDPKVQV 75 (447)
T ss_pred eeEC--CC----CCeeeeeeeeEEEEeccchhhHHHHHHHHH--Hhhheeee-------ccc---eeeeeeeeccceEEE
Confidence 4799 99 999999998899999999887776666533 47888888 454 1333 3355899999
Q ss_pred EEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCcee
Q 001391 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1088)
Q Consensus 102 w~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 180 (1088)
|++... +....+..-.+.+.++.|+| ||+ .|.+..-|-.|.+|.+.+.+....-....+
T Consensus 76 wsl~Qp---------------ew~ckIdeg~agls~~~WSP---dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~-- 135 (447)
T KOG4497|consen 76 WSLVQP---------------EWYCKIDEGQAGLSSISWSP---DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN-- 135 (447)
T ss_pred EEeecc---------------eeEEEeccCCCcceeeeECC---CcceEeeeecceeEEEEEEeccceeEEecccccC--
Confidence 999853 45566667778899999999 996 455566688999999988765543322222
Q ss_pred EEEEeeecCCCCCcEEEEEecCCe---EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 181 LYSMKLWGDNLEALRIASGTIYNE---IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~dg~---I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
+...+| .++|.+.+..+.... +.+.... .-..+..+.-.+-
T Consensus 136 ~kg~~f---~~dg~f~ai~sRrDCkdyv~i~~c~---------------------------------~W~ll~~f~~dT~ 179 (447)
T KOG4497|consen 136 VKGYAF---HPDGQFCAILSRRDCKDYVQISSCK---------------------------------AWILLKEFKLDTI 179 (447)
T ss_pred ceeEEE---CCCCceeeeeecccHHHHHHHHhhH---------------------------------HHHHHHhcCCCcc
Confidence 223333 578887777664421 1111111 1123333444445
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
..+++.|+|||..+ -+||.--. ..+ ......-.+..+.|+ +++++.|+.|+.+||-+-
T Consensus 180 DltgieWsPdg~~l---------aVwd~~Le--------ykv---~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 180 DLTGIEWSPDGNWL---------AVWDNVLE--------YKV---YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred cccCceECCCCcEE---------EEecchhh--------hee---eeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 56667777777644 34543221 000 112222345666666 467777777777666432
Q ss_pred -C----Cc--------------------------------------------------------eeEEEcccC-----CC
Q 001391 336 -D----GK--------------------------------------------------------QLKMIKEHI-----GR 349 (1088)
Q Consensus 336 -~----~~--------------------------------------------------------~~~~~~~h~-----~~ 349 (1088)
+ ++ .+..++... .-
T Consensus 240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC 319 (447)
T ss_pred eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence 1 00 011111101 11
Q ss_pred CeEEEEEcCCCCEEEEEeCC--CCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEe
Q 001391 350 GIWRCLYDSLSSLLVTAGFD--SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 427 (1088)
++--++|++|..+++|-... +.+-+||++...+...- ....+|+...|
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL------------------------------iQk~piraf~W 369 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL------------------------------IQKHPIRAFEW 369 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh------------------------------hhccceeEEEe
Confidence 46778999999998886543 67889998653322111 11247899999
Q ss_pred ccCC-eEEEEecCCeEEEEEeccCCcceeEEeeee-cCCcceEEEecCCCCCCCcCCCCCeEEEecCCC
Q 001391 428 TSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQV-SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKG 494 (1088)
Q Consensus 428 s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg 494 (1088)
.|.. ++++.+...++|.|..... ..... ..+..|..+..... +..++..+.|.
T Consensus 370 dP~~prL~vctg~srLY~W~psg~------~~V~vP~~GF~i~~l~W~~~--------g~~i~l~~kDa 424 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGP------RVVGVPKKGFNIQKLQWLQP--------GEFIVLCGKDA 424 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCc------eEEecCCCCceeeeEEecCC--------CcEEEEEcCCc
Confidence 9965 7888888888885543221 12122 22345555555433 36677777765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-08 Score=112.73 Aligned_cols=458 Identities=14% Similarity=0.156 Sum_probs=265.0
Q ss_pred eCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 63 ~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
+...+.+++.|. .+. .++|++| ||.++|..+.+...+.....-.....+..-+++.||...|.-+.|+
T Consensus 12 PnnvkL~c~~WN-------ke~----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN 80 (1189)
T KOG2041|consen 12 PNNVKLHCAEWN-------KES----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN 80 (1189)
T ss_pred CCCceEEEEEEc-------ccC----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec
Confidence 344578999998 554 6888877 8999999998654222110000111355667899999999999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcCCCceEEEe-ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
. +.+.|-|...+|.|.+|-+-.+.....+ ....++.+.|+++ ..+|..|+....||.|.|=.++.+
T Consensus 81 e---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW---n~dG~kIcIvYeDGavIVGsvdGN------- 147 (1189)
T KOG2041|consen 81 E---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW---NLDGTKICIVYEDGAVIVGSVDGN------- 147 (1189)
T ss_pred c---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEE---cCCCcEEEEEEccCCEEEEeeccc-------
Confidence 8 8888989999999999999777654332 2345667778876 578999999999999998887722
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCcee-e
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE-V 299 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-i 299 (1088)
++|...-.+. ....+.|++|.+.++.+-..|.+.++|....-...- ...+ +
T Consensus 148 -----------------RIwgKeLkg~----------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl-~~~c~V 199 (1189)
T KOG2041|consen 148 -----------------RIWGKELKGQ----------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKL-EKDCEV 199 (1189)
T ss_pred -----------------eecchhcchh----------eccceeecccHHHHHhhhcCCcEEEecccccHHHhh-hhceEE
Confidence 2222211111 123688999999888888889999999765311000 0011 1
Q ss_pred e-ceeeeccCcceEEEEEC-C---------CEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEEE
Q 001391 300 G-SSVLYGHNARVWDCCLT-D---------SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 300 ~-~~~~~~h~~~I~~v~~~-~---------~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg 366 (1088)
. .-.+......|..+.|. + ..++.+-.+|.+.+..- +..++-.-.+ - .|....|+++|..|+.+
T Consensus 200 n~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m-~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 200 NGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--M-KIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred eeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--c-EeecceecCCCcEEEEc
Confidence 0 00112222346666764 1 47899999999988776 2233322222 2 37889999999999999
Q ss_pred eCCC---------CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 367 GFDS---------AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 367 ~~Dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
|.|. .|.++.. ....++.+...+..|++++|-..|..++..
T Consensus 277 G~~~da~~~~d~n~v~Fysp------------------------------~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYSP------------------------------YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cCcccccCccccceEEEecc------------------------------chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 8763 2222222 112344455556679999999888888888
Q ss_pred cCCeEEEEEeccCCcceeEEe-------eeecC--CcceEEEecCCCCCC----------CcCCCCCeEEEecCCCCEEE
Q 001391 438 NHGYLYHTKLCDMDSVNWNKI-------LQVSE--GMPIICMDLLSNEPK----------YPCGIDDWVALGDGKGNMTI 498 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~-------~~~~~--~~~i~~l~~~~~~~~----------~s~~~~~~la~g~~dg~I~i 498 (1088)
-++.|+..++... -+|..+ .++.+ ...|.-++...+... ..+..--.++.-..+|.|.-
T Consensus 327 vdsfiyfanIRP~--ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e 404 (1189)
T KOG2041|consen 327 VDSFIYFANIRPE--YKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPE 404 (1189)
T ss_pred ecceEEEEeeccc--ceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcc
Confidence 8889888776543 223221 12221 112333333222200 01111123444444555554
Q ss_pred EEE-cCCCcCcceeeeeeeecccc---ceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCC----------
Q 001391 499 VRV-VGDVHTPQLSFTFTWSAGIE---RQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS---------- 564 (1088)
Q Consensus 499 w~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~---------- 564 (1088)
++. ++....-...+.-......+ ..+...+. .-++.+++.++.+ .+.+|....++........
T Consensus 405 ~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv--~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~ 481 (1189)
T KOG2041|consen 405 YSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFV--CVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHG 481 (1189)
T ss_pred hhhhhcccceEEEeeecccCCcCCCCcceeeeeEE--EecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccC
Confidence 421 11110000011000000111 11222121 2356677777654 5788976544321111110
Q ss_pred -------cccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 565 -------KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 565 -------~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
....++.-..-..+...+|.+++.| .++|.+|-..|.|+-|.+.+.
T Consensus 482 Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv 534 (1189)
T KOG2041|consen 482 DDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNV 534 (1189)
T ss_pred CCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecce
Confidence 0001111101123567788888877 789999999999999998864
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9e-11 Score=125.28 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=141.7
Q ss_pred EEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
..++|+ .+| ..+++++ |+++|||++.. ...+.....|...|.++.|+| |+
T Consensus 148 k~vaf~-------~~g----s~latgg~dg~lRv~~~Ps---------------~~t~l~e~~~~~eV~DL~FS~---dg 198 (398)
T KOG0771|consen 148 KVVAFN-------GDG----SKLATGGTDGTLRVWEWPS---------------MLTILEEIAHHAEVKDLDFSP---DG 198 (398)
T ss_pred eEEEEc-------CCC----CEeeeccccceEEEEecCc---------------chhhhhhHhhcCccccceeCC---CC
Confidence 455666 666 6777776 99999999774 445566678999999999999 99
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEE-EeeecCC-CCCcEEEEE-ecCCeEEEEEeccCccccCCCCCCC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYS-MKLWGDN-LEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s-~~~~~~s-~~~~~l~sg-~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
+.|++-+.| ..+||+++++..+...........++ ++|..++ .+..++++- ..-+.|+.||+.
T Consensus 199 k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~------------- 264 (398)
T KOG0771|consen 199 KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS------------- 264 (398)
T ss_pred cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee-------------
Confidence 999999999 99999999997777665433333333 3442211 112344443 334567777765
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
+|... ..-+......-...|.+++.+++|++++.|+.||.|-|++..+. +.+. +.-
T Consensus 265 --------------~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l--------q~~~-~vk 320 (398)
T KOG0771|consen 265 --------------LWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL--------QRLQ-YVK 320 (398)
T ss_pred --------------eeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee--------eeeE-eeh
Confidence 23221 11112222223457999999999999999999999999999884 4443 366
Q ss_pred eccCcceEEEEECC--CEEEEEeCCCcEEEEcC
Q 001391 305 YGHNARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 305 ~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~ 335 (1088)
..|...|+.+.|+| +++++-+.|...+|..+
T Consensus 321 ~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 321 EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 78999999999994 67888888888887766
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-10 Score=122.03 Aligned_cols=244 Identities=17% Similarity=0.154 Sum_probs=155.6
Q ss_pred CCCCEEEEEeCCeEEEEECCCCeeEEEE---eeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCC
Q 001391 33 SSLPFLLAGSGSQVLLYDLEAGTLIRPF---QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELS 109 (1088)
Q Consensus 33 ~~~~~laag~d~~I~vwd~~tg~~~~~~---~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~ 109 (1088)
..+.+|.-..+..++||+...+..+..- ..+.+..-.+=+|... ...+.+ ..+++..+-+.|.+.+......
T Consensus 133 ~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~--~a~~~g---~dllIGf~tGqvq~idp~~~~~ 207 (636)
T KOG2394|consen 133 GKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSF--TATPKG---LDLLIGFTTGQVQLIDPINFEV 207 (636)
T ss_pred CCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceeccccc--ccCCCC---cceEEeeccCceEEecchhhHH
Confidence 4477888888889999998754322111 0112212223333211 122444 2688888889999988764220
Q ss_pred CCCCCCCcccccccee-eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeec
Q 001391 110 PNSQYQPETCVNLSLV-QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~-~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~ 188 (1088)
.++. ....-....|+|+.|.|. +...++.+-.+|.+.++|.. +..+.....|..
T Consensus 208 ------------sklfne~r~i~ktsvT~ikWvpg--~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~---- 262 (636)
T KOG2394|consen 208 ------------SKLFNEERLINKSSVTCIKWVPG--SDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQA---- 262 (636)
T ss_pred ------------HHhhhhcccccccceEEEEEEeC--CCceEEEEEecCceEEeecc-------ccccCCCCcccc----
Confidence 0000 001112378999999992 33455666789999999872 112222222221
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
-+++..++.. .|.-. ....++....--++.|...+|+|||
T Consensus 263 -~k~~~~f~i~-------t~ksk--------------------------------~~rNPv~~w~~~~g~in~f~FS~DG 302 (636)
T KOG2394|consen 263 -LKDGDQFAIL-------TSKSK--------------------------------KTRNPVARWHIGEGSINEFAFSPDG 302 (636)
T ss_pred -cCCCCeeEEe-------eeecc--------------------------------ccCCccceeEeccccccceeEcCCC
Confidence 1334333332 22221 0223444444455689999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
++||+.|.||.+||+|..+.. .+. .+...-+...|++|+ +.+|++|++|-.|.||.+ +.+.+..-++
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~e--------Llg--~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQE--------LLG--VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred ceEEEEecCceEEEeeccHHH--------HHH--HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence 999999999999999999843 232 333344678999999 689999999999999999 7888888899
Q ss_pred cCCCCeEEEEEc
Q 001391 346 HIGRGIWRCLYD 357 (1088)
Q Consensus 346 h~~~~V~~l~~~ 357 (1088)
|.. .|..++|.
T Consensus 373 HkS-WVs~VaFD 383 (636)
T KOG2394|consen 373 HKS-WVSVVAFD 383 (636)
T ss_pred ccc-ceeeEeec
Confidence 998 59999998
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-09 Score=117.29 Aligned_cols=556 Identities=14% Similarity=0.107 Sum_probs=284.8
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCC-----CCC---CCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcce
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPS-----HLS---SLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRL 68 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd-----~~~---~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V 68 (1088)
.|.+-|..+-+ |...|+.|.|. |. .++ +.-+||++. .|.|.+||...+..+..++.+.. +|
T Consensus 36 lV~VVDs~s~q~iqsie~h~s~V~~VrWa--p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~-~~ 112 (1062)
T KOG1912|consen 36 LVSVVDSRSLQLIQSIELHQSAVTSVRWA--PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSND-SV 112 (1062)
T ss_pred eEEEEehhhhhhhhccccCccceeEEEec--cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCc-ch
Confidence 35555555544 66889999998 64 222 334445555 49999999999988888887555 79
Q ss_pred EEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~ 148 (1088)
..++|-+. .++. ++.+++..+..++.+|+..+++ .+-....-.....|+.+.|. |.+
T Consensus 113 qdl~W~~~----rd~S--rd~LlaIh~ss~lvLwntdtG~---------------k~Wk~~ys~~iLs~f~~DPf--d~r 169 (1062)
T KOG1912|consen 113 QDLCWVPA----RDDS--RDVLLAIHGSSTLVLWNTDTGE---------------KFWKYDYSHEILSCFRVDPF--DSR 169 (1062)
T ss_pred hheeeeec----cCcc--hheeEEecCCcEEEEEEccCCc---------------eeeccccCCcceeeeeeCCC--Ccc
Confidence 99999754 1333 3478888999999999988643 33333333445566888885 455
Q ss_pred EEEEEEcCCcEEEEEcCC-------CceEEEeccC-C------------------c----eeEEEEeeecCCCCCcEEEE
Q 001391 149 SLAIGCSDNSIRVWDISN-------SSIILEVHSP-E------------------R----CLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 149 ~lasgs~Dg~V~iWd~~~-------~~~~~~~~~~-~------------------~----~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+..-+..|.+.+-+.-. ++.. .+..+ . . -+.|++. +.++|.-.-+.-
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~-qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~-faf~p~~rn~lf 247 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEF-QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ-FAFSPHWRNILF 247 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeE-EEecCccchhhhhhhhhccccccCCCcchhHHHHHHh-hhcChhhhceEE
Confidence 555555567776665521 1111 11111 0 0 0011111 112333333333
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC--CEEEEEEC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG--SKLVSVSD 276 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g--~~l~s~s~ 276 (1088)
......+.++|++ -..++....--.+.+.-+.+.|++ ..|...-.
T Consensus 248 i~~prellv~dle---------------------------------~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~ 294 (1062)
T KOG1912|consen 248 ITFPRELLVFDLE---------------------------------YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS 294 (1062)
T ss_pred EEeccceEEEcch---------------------------------hhceeEEEEeccCCcceeEeccCCCcceEEEEec
Confidence 4456778888887 344555544445555566777765 56888899
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE-------------EC-CCEEEEEeCCCcEEEEcC-CCce--
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-------------LT-DSFIITAGEDCTCRVWGS-DGKQ-- 339 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~-------------~~-~~~l~sg~~Dg~i~vWd~-~~~~-- 339 (1088)
||.+.+|--+........+.+.+. ..-...+-+++ -+ ++.++.--.+|...+|.+ +|+.
T Consensus 295 nG~ltirvrk~~~~~f~~~~~~l~----~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 295 NGRLTIRVRKEEPTEFKKPNASLS----MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred CCeEEEEEeeccCccccccchhhc----cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 999999976653211000000000 00001111111 11 233333345666677776 3220
Q ss_pred -----------------------------eEEEcccCCCCeEEEEEc-----------CCC-------CEEEEEeCCCCE
Q 001391 340 -----------------------------LKMIKEHIGRGIWRCLYD-----------SLS-------SLLVTAGFDSAI 372 (1088)
Q Consensus 340 -----------------------------~~~~~~h~~~~V~~l~~~-----------~dg-------~~l~tg~~Dg~I 372 (1088)
+....+|.. +..+.... |.+ .+++.|...|+|
T Consensus 371 ~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~s-Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 371 DYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSS-GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred ccccccccccccccccCceeehhhccccchhhcCCCCC-CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 000112332 23333222 222 267888899999
Q ss_pred EEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe-------cCCe---E
Q 001391 373 KVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-------NHGY---L 442 (1088)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t-------~~g~---i 442 (1088)
.++|+.+..+. ..+..|...|+++.|.....++..+ ..|+ +
T Consensus 450 ~vvdvst~~v~-----------------------------~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l 500 (1062)
T KOG1912|consen 450 DVVDVSTNAVA-----------------------------ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDL 500 (1062)
T ss_pred EEEEecchhhh-----------------------------hhhcccccceeeeeeccceeEEEeeeccccccccceeeeE
Confidence 99998543221 1112234567778777665555432 1122 2
Q ss_pred EEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceee------eeee
Q 001391 443 YHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSF------TFTW 516 (1088)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~------~~~~ 516 (1088)
...++.......+ +..+++++.+|..+.++..+ .++++.-.+.-+.+|++.+-.+...... ...|
T Consensus 501 ~vtdLrtGlsk~f-R~l~~~despI~~irvS~~~--------~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leW 571 (1062)
T KOG1912|consen 501 VVTDLRTGLSKRF-RGLQKPDESPIRAIRVSSSG--------RYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEW 571 (1062)
T ss_pred EEEEccccccccc-ccCCCCCcCcceeeeecccC--------ceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEee
Confidence 2223333333333 23366677889888886654 8999999999999999966444322111 2223
Q ss_pred eccccceeeeEEE--eecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCE
Q 001391 517 SAGIERQLLGTYW--CKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEV 594 (1088)
Q Consensus 517 ~~~~~~~~~~~~~--~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~ 594 (1088)
....+..+...-. ..+...+..++.+.+. +++.+............ .....+.| .-.+..|+|- +..
T Consensus 572 sl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgsq---~~~a~esf----afal~~mAwk--~d~ 640 (1062)
T KOG1912|consen 572 SLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGSQ---VNTAWESF----AFALCAMAWK--DDI 640 (1062)
T ss_pred cccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhccccc---hhhHHHHH----HHHHHhhhcc--CCe
Confidence 3111111111000 0011223344333232 33322211111111000 00000111 1123345554 779
Q ss_pred EEEEcCCCcEEEEeCCcccccc---cc-cccccccCcceeecccccccceeEEEEEecc--CCceEEEE-ecCCCeEEEE
Q 001391 595 LFCGDLRGNLVLFPLLRDLLND---KS-VALHVEVSPLNYFKGAHGISTVSTLSVAKLR--SNQTEIRS-TGGDGCICYL 667 (1088)
Q Consensus 595 LatGs~dg~I~Iw~~~~~~~~~---~~-~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~--~~~~~l~t-~g~Dg~i~iw 667 (1088)
|+.|+.+|++.+||+....... .+ +..+... .....|-|. -.|....|.+.- .....+.+ +|+|++.++.
T Consensus 641 lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~--~~~ipG~~~-~lvl~~d~~~lwdtk~~~lV~siag~dssfrll 717 (1062)
T KOG1912|consen 641 LVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLT--FPQIPGDHT-TLVLELDWLPLWDTKADTLVLSIAGMDSSFRLL 717 (1062)
T ss_pred eEeecccCceeEEecccccccCccCCCCchhhhee--cccCCCCce-EEEEecCcceecccccceeeeeeccCCcceEEE
Confidence 9999999999999987532211 00 0001000 011223332 345555555421 11133333 5999999999
Q ss_pred EeecCCcceee
Q 001391 668 EYDKDRESLEF 678 (1088)
Q Consensus 668 ~~~~~~~~~~~ 678 (1088)
|++-.+....+
T Consensus 718 dvdlc~~~~~~ 728 (1062)
T KOG1912|consen 718 DVDLCEKSPLV 728 (1062)
T ss_pred EEEecccCcee
Confidence 99876544333
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-08 Score=103.78 Aligned_cols=302 Identities=16% Similarity=0.151 Sum_probs=175.4
Q ss_pred eEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
...++|. .|. ..++++.|.-.+||+.+.-. ...+...+...+.-+...- -.
T Consensus 8 ~lsvs~N-------QD~----ScFava~~~Gfriyn~~P~k---------------e~~~r~~~~~G~~~veMLf---R~ 58 (346)
T KOG2111|consen 8 TLSVSFN-------QDH----SCFAVATDTGFRIYNCDPFK---------------ESASRQFIDGGFKIVEMLF---RS 58 (346)
T ss_pred eeEEEEc-------cCC----ceEEEEecCceEEEecCchh---------------hhhhhccccCchhhhhHhh---hh
Confidence 4457787 554 68888999999999988421 1111111111111111111 22
Q ss_pred CEEEE-EEc------CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 148 RSLAI-GCS------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 148 ~~las-gs~------Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
++||. ||. -+.|.|||=...+++.++.-. ..+.++.+ . ...|++. ..+.|.||....
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~--~~I~~V~l---~--r~riVvv-l~~~I~VytF~~-------- 122 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFN--SEIKAVKL---R--RDRIVVV-LENKIYVYTFPD-------- 122 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEEec--cceeeEEE---c--CCeEEEE-ecCeEEEEEcCC--------
Confidence 44433 433 357999996556666655422 22444544 2 3344443 357899998761
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCC--CCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcccCCCCce
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH--EGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh--~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~ 297 (1088)
..+.++.+..- .....++.-..+...|+. |-.-|.|+|-|+...+. .
T Consensus 123 ------------------------n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------~ 172 (346)
T KOG2111|consen 123 ------------------------NPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------N 172 (346)
T ss_pred ------------------------ChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc------C
Confidence 22233332211 112333332333344443 44568999999987432 1
Q ss_pred eeeceeeeccCcceEEEEEC--CCEEEEEeCCCc-EEEEcC-CCceeEEEccc-CCCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~-i~vWd~-~~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
.+.....|...|.|++.+ |.+++|++..|+ |||||. +|..+..++.- ....|.+++|+|++.+|++.+..|++
T Consensus 173 --~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 173 --APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred --CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence 123788999999999998 899999999998 699999 89999888542 22359999999999999999999999
Q ss_pred EEEEcCCCCCCcccCCccccccCCCcceEEeeeCCC---ccceeeccCCCCceEEEEeccC-CeEEEEecCCeEEEEEec
Q 001391 373 KVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF---SEQIRLTDSKSEYVRCLHLTSE-DTLYIATNHGYLYHTKLC 448 (1088)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~V~~l~~s~~-~~ll~~t~~g~i~~~~~~ 448 (1088)
.|+.+.......- .+ .+..+.. .-.|.. ......+.-.++..-.++|..+ +.+++...||..+.+.+.
T Consensus 251 HiF~l~~~~~~~~-~~-SSl~~~~------~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 251 HIFSLRDTENTED-ES-SSLSFKR------LVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEEEeecCCCCcc-cc-ccccccc------cccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 9999954321111 00 0111000 000000 0000111112334556677766 677888888888877665
Q ss_pred cCCcce
Q 001391 449 DMDSVN 454 (1088)
Q Consensus 449 ~~~~~~ 454 (1088)
..+.++
T Consensus 323 ~~~~g~ 328 (346)
T KOG2111|consen 323 PKNGGE 328 (346)
T ss_pred cccccc
Confidence 554433
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=112.56 Aligned_cols=204 Identities=16% Similarity=0.162 Sum_probs=156.7
Q ss_pred ceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
+|.+.+|+ +|. ..+|++ ....|.||...... ..+..+++..|...|+.|+|+|
T Consensus 12 pitchAwn-------~dr----t~iAv~~~~~evhiy~~~~~~------------~w~~~htls~Hd~~vtgvdWap--- 65 (361)
T KOG1523|consen 12 PITCHAWN-------SDR----TQIAVSPNNHEVHIYSMLGAD------------LWEPAHTLSEHDKIVTGVDWAP--- 65 (361)
T ss_pred ceeeeeec-------CCC----ceEEeccCCceEEEEEecCCC------------CceeceehhhhCcceeEEeecC---
Confidence 79999999 776 455554 46799999987533 2678899999999999999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
..+.|++|+.|..-++|....+ +
T Consensus 66 ~snrIvtcs~drnayVw~~~~~-------------------------~-------------------------------- 88 (361)
T KOG1523|consen 66 KSNRIVTCSHDRNAYVWTQPSG-------------------------G-------------------------------- 88 (361)
T ss_pred CCCceeEccCCCCccccccCCC-------------------------C--------------------------------
Confidence 8999999999998888865211 1
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
+-++...+..|+...++|.|+|.+..+++||.-+.|.+|-++.... --+....-.
T Consensus 89 -------------------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------WWVsKhikk 143 (361)
T KOG1523|consen 89 -------------------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------WWVSKHIKK 143 (361)
T ss_pred -------------------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------eehhhhhCC
Confidence 1222334456788999999999999999999999999998876421 111112445
Q ss_pred ccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-----C--------------CceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS-----D--------------GKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-----~--------------~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
.+...|.++.|+ +-+++.|+.|+.+||+.. + |+++.++....+ .|..+.|+|+|..|+
T Consensus 144 PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg-wvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 144 PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG-WVHGVLFSPSGNRLA 222 (361)
T ss_pred ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC-ceeeeEeCCCCCEee
Confidence 667889999999 457888999999999986 1 122333433334 699999999999999
Q ss_pred EEeCCCCEEEEEcCC
Q 001391 365 TAGFDSAIKVHQFQA 379 (1088)
Q Consensus 365 tg~~Dg~I~iwd~~~ 379 (1088)
=.+.|..+.+-|..+
T Consensus 223 wv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAG 237 (361)
T ss_pred EecCCCceEEeecCC
Confidence 999999999998854
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-10 Score=129.30 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=149.9
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCcccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
.+|.|||..... ...+..+.. .+...+|| |||+ .++.++. +..|.+||+....
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wS-------PDG~---~la~~s~~~~~~~i~i~dl~tg~------------ 239 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQ-PLMSPAWS-------PDGS---KLAYVSFENKKSQLVVHDLRSGA------------ 239 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCC-ccccceEc-------CCCC---EEEEEEecCCCcEEEEEeCCCCc------------
Confidence 589999986544 445555444 68999999 8883 3333332 2479999987543
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEE--EcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVW--DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iW--d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.+.+..+.+|. ..++|+| ||+.|+.++ .+|.+.|| |+.+++. ..+..+. ....+..+ +||+..|+
T Consensus 240 -~~~l~~~~g~~---~~~~wSP---DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~-~~~~~~~w---SpDG~~i~ 307 (429)
T PRK01742 240 -RKVVASFRGHN---GAPAFSP---DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGA-GNNTEPSW---SPDGQSIL 307 (429)
T ss_pred -eEEEecCCCcc---CceeECC---CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCC-CCcCCEEE---CCCCCEEE
Confidence 33445555554 3689999 999888764 68876665 5555543 3333222 22334444 68888766
Q ss_pred E-EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 198 S-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 198 s-g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
. +..+|...||++.. .+.....+ ++.+ ....|+|+|++++..+.
T Consensus 308 f~s~~~g~~~I~~~~~--------------------------------~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 308 FTSDRSGSPQVYRMSA--------------------------------SGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EEECCCCCceEEEEEC--------------------------------CCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 5 44678899998761 11111222 3443 45789999999988887
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC---CCceeEEEcccCCCCe
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---DGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~---~~~~~~~~~~h~~~~V 351 (1088)
++ +.+||+.++.. +.+ ...+ ....+.|+ +.+|+.++.++.+.+|.+ +|+....+..|.+ .+
T Consensus 353 ~~-i~~~Dl~~g~~------~~l----t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g-~~ 418 (429)
T PRK01742 353 DN-VVKQDLTSGST------EVL----SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG-QV 418 (429)
T ss_pred CC-EEEEECCCCCe------EEe----cCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC-CC
Confidence 65 55599887643 111 1111 22456677 678999998998887775 7888899988887 58
Q ss_pred EEEEEcCC
Q 001391 352 WRCLYDSL 359 (1088)
Q Consensus 352 ~~l~~~~d 359 (1088)
...+|+|-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 88999874
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=113.56 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=168.2
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-----eEEEEeeeC-----------CcceEEEEeccccccc
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINCTE 80 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-----~~~~~~~~~-----------~~~V~~i~~s~~~~~~ 80 (1088)
.-|.+|.|. .. |.+||+|. ||.|.+|.-.... ....++.|+ ..+|..|.|.+.
T Consensus 26 diis~vef~--~~----Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~---- 95 (433)
T KOG1354|consen 26 DIISAVEFD--HY----GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD---- 95 (433)
T ss_pred cceeeEEee--cc----cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC----
Confidence 458899999 66 89999999 7999999754322 233444333 246788888733
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCC------Cc--------------cccccceeeec-cCCCCcEEEEE
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ------PE--------------TCVNLSLVQSL-PRLSHWVFDVC 139 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~------~~--------------~~~~~~~~~~l-~~h~~~I~~v~ 139 (1088)
.+. ...|++..|++|++|.+.......+.+. |. ..+.-.+.+.+ .+|+-.|+++.
T Consensus 96 -~n~---a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 96 -GNL---AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred -CCc---cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 222 3667777799999999985442221110 00 00111222332 46888999999
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCceEE---EeccCC----ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL---EVHSPE----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~---~~~~~~----~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
++. |++.++++ .|=.|.+|+++--.... -++.+. ..++.+..|++. ...+++-.+..|+|++-|++.
T Consensus 172 ~Ns---D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 172 VNS---DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred ecC---ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEecCCCcEEEeechh
Confidence 998 99988887 48889999987433222 222221 234556666532 356777888899999999982
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
..+ .+..-+++..+......--|.+--..|..+.|+++|+++++-.. -+|++||+....
T Consensus 246 ~aL-----------------Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--- 304 (433)
T KOG1354|consen 246 SAL-----------------CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--- 304 (433)
T ss_pred hhh-----------------hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC---
Confidence 211 11111111111112222223344567889999999999988654 589999996542
Q ss_pred CCCceeeeceeeeccC------------cce---EEEEECC--CEEEEEeCCCcEEEEcC
Q 001391 293 SDSIEEVGSSVLYGHN------------ARV---WDCCLTD--SFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~------------~~I---~~v~~~~--~~l~sg~~Dg~i~vWd~ 335 (1088)
+++. +..-|. ..| ..++|+| .+++||+.....++++.
T Consensus 305 ----~pv~--t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 305 ----KPVE--TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred ----Ccce--EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 2222 222221 122 4577774 59999999999999997
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-10 Score=130.40 Aligned_cols=230 Identities=12% Similarity=0.007 Sum_probs=148.0
Q ss_pred CCCceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEe-C---CeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 3 KKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS-G---SQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 3 d~~i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~-d---~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+..|.+||..... +...|...+|| || ++.|+..+ + ..|++||+.+++... +....+ ....++
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wS--PD----G~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g-~~~~~~ 254 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWS--PD----GSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG-HNGAPA 254 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEc--CC----CCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC-ccCcee
Confidence 4679999976543 34568999999 99 88887755 2 579999999875422 222222 245688
Q ss_pred ecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|+ |||+ .++.+. .++.+.||.++... .....+..+...+.+..|+| ||+.|+
T Consensus 255 wS-------PDG~---~La~~~~~~g~~~Iy~~d~~~--------------~~~~~lt~~~~~~~~~~wSp---DG~~i~ 307 (429)
T PRK01742 255 FS-------PDGS---RLAFASSKDGVLNIYVMGANG--------------GTPSQLTSGAGNNTEPSWSP---DGQSIL 307 (429)
T ss_pred EC-------CCCC---EEEEEEecCCcEEEEEEECCC--------------CCeEeeccCCCCcCCEEECC---CCCEEE
Confidence 99 8883 344433 47777777665322 12344556677788999999 999776
Q ss_pred EEE-cCCcEEEEEcCCC-ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 152 IGC-SDNSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 152 sgs-~Dg~V~iWd~~~~-~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
..+ .++..+||++... .....+ .+.. +... .+|++..|+..+.++ +.+||+.
T Consensus 308 f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~---~SpDG~~ia~~~~~~-i~~~Dl~------------------ 361 (429)
T PRK01742 308 FTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQ---ISADGKTLVMINGDN-VVKQDLT------------------ 361 (429)
T ss_pred EEECCCCCceEEEEECCCCCeEEe-cCCC---CCcc---CCCCCCEEEEEcCCC-EEEEECC------------------
Confidence 554 5788899987542 222222 2221 2333 378999988877655 5558887
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~ 309 (1088)
++........+ ....+.|+|+|++++.++.++.+.+|.+.... ..... .+.+|.+
T Consensus 362 ---------------~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~------G~~~~--~l~~~~g 416 (429)
T PRK01742 362 ---------------SGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD------GRFKA--RLPGSDG 416 (429)
T ss_pred ---------------CCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC------CCceE--EccCCCC
Confidence 22222111122 23567899999999999999988888764311 12222 5667777
Q ss_pred ceEEEEECC
Q 001391 310 RVWDCCLTD 318 (1088)
Q Consensus 310 ~I~~v~~~~ 318 (1088)
.+...+|++
T Consensus 417 ~~~~p~wsp 425 (429)
T PRK01742 417 QVKFPAWSP 425 (429)
T ss_pred CCCCcccCC
Confidence 788888874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-09 Score=107.91 Aligned_cols=210 Identities=15% Similarity=0.178 Sum_probs=132.4
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
-++..++++ +- --.+.+++.|..|+|||-++ ++...++......|.+++|. |.+. .-++++-.+
T Consensus 99 ~dlr~~aWh--qH---~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawR-------Plsa---selavgCr~ 162 (445)
T KOG2139|consen 99 IDLRGVAWH--QH---IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWR-------PLSA---SELAVGCRA 162 (445)
T ss_pred cceeeEeec--hh---hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEec-------cCCc---ceeeeeecc
Confidence 456778888 53 02333344589999999766 66666665444469999999 4443 566676678
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEeccC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
-|.||..+......-...- ...-...+...++| ..|++++|.+ ||..+++++- |..|+|||..++..+.-....
T Consensus 163 gIciW~~s~tln~~r~~~~-~s~~~~qvl~~pgh-~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g 237 (445)
T KOG2139|consen 163 GICIWSDSRTLNANRNIRM-MSTHHLQVLQDPGH-NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG 237 (445)
T ss_pred eeEEEEcCccccccccccc-ccccchhheeCCCC-ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCcccccccC
Confidence 8999998743311100000 00001123344566 6899999999 9999999874 778999999998765443211
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
.+ -+++ ...+||+.++.+++-|+..++|.... .-.... -.-..
T Consensus 238 lg--g~sl--LkwSPdgd~lfaAt~davfrlw~e~q--------------------------------~wt~er-w~lgs 280 (445)
T KOG2139|consen 238 LG--GFSL--LKWSPDGDVLFAATCDAVFRLWQENQ--------------------------------SWTKER-WILGS 280 (445)
T ss_pred CC--ceee--EEEcCCCCEEEEecccceeeeehhcc--------------------------------cceecc-eeccC
Confidence 11 1121 12379999999999999999997550 111111 11233
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
+.|....|+|+|++|+-+.. +.-++|.+.
T Consensus 281 grvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 281 GRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred CceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 48999999999998755433 233445443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-09 Score=111.27 Aligned_cols=227 Identities=17% Similarity=0.229 Sum_probs=161.1
Q ss_pred CEEEEEe-CCeEEEEE-CCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYD-LEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd-~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~ 112 (1088)
.-+.+.+ |.+++||- ..+|+.-..+......++..+.+. ++. ..|.+ ...+++.-+.+...-
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~-------~e~----~~L~vg~~ngtvtefs~sedf---- 101 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV-------SES----RRLYVGQDNGTVTEFALSEDF---- 101 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee-------ccc----eEEEEEEecceEEEEEhhhhh----
Confidence 3355544 79999995 345555445554445578888888 554 44444 457899888876421
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec--cCCceeEEEEeeecCC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDN 190 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~--~~~~~~~~s~~~~~~s 190 (1088)
-+....+.+..|...|..+-|+. ....+++.+.|..+.---.+.+..+.... ....+..+.
T Consensus 102 -------nkm~~~r~~~~h~~~v~~~if~~---~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d------- 164 (404)
T KOG1409|consen 102 -------NKMTFLKDYLAHQARVSAIVFSL---THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFD------- 164 (404)
T ss_pred -------hhcchhhhhhhhhcceeeEEecC---CceeEEEeccccceEEEeeccCCcccceEeeccCCCCcee-------
Confidence 02456677788999999999988 77899999988876655555554433221 111111111
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
-.+...|...|.|.+-.+. +.....+.++.+|.+.+.+++|.|..+.
T Consensus 165 --~~~~fvGd~~gqvt~lr~~-------------------------------~~~~~~i~~~~~h~~~~~~l~Wd~~~~~ 211 (404)
T KOG1409|consen 165 --ALYAFVGDHSGQITMLKLE-------------------------------QNGCQLITTFNGHTGEVTCLKWDPGQRL 211 (404)
T ss_pred --eEEEEecccccceEEEEEe-------------------------------ecCCceEEEEcCcccceEEEEEcCCCcE
Confidence 1144556666777766665 1145678889999999999999999999
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~ 336 (1088)
+.+|..|..+.+||+...+. +. ..+++|...|..++.. -..++++++||.|.+|+.+
T Consensus 212 LfSg~~d~~vi~wdigg~~g--------~~-~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKG--------TA-YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEeccccCceEEEeccCCcc--------ee-eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999987532 22 4889999999888876 5789999999999999983
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-09 Score=112.75 Aligned_cols=268 Identities=14% Similarity=0.151 Sum_probs=186.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEe-----eeCCcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQ-----VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~-----~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..|++++|- -+ +....+.... +..+..++.....+..... ......|.+++.. |+ .++
T Consensus 56 ~ris~l~~~--~d--~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--------dg----~Li 119 (412)
T KOG3881|consen 56 DRISSLLFG--VD--GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--------DG----TLI 119 (412)
T ss_pred hhhhhheee--cC--CceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--------CC----EEE
Confidence 447777777 43 2245566653 5667777766655544431 1122357777764 54 788
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC--CcEEEEEcCCCce
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSI 169 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D--g~V~iWd~~~~~~ 169 (1088)
++-++|.+.+|..+.+.... .....+..+ ..+..|.-+| .+...+|+||.. +.+.+||+++.+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hs-----------s~l~~la~g-~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHS-----------SKLIKLATG-PGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred EEecCCcEEEEeccCCcccc-----------ccceeeecC-CceeeeccCC--CCCceEecCchhcccceeeeeccccee
Confidence 88899999999998543111 111122222 3456666665 234567779988 8899999999887
Q ss_pred EEEeccCCc--------eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 170 ILEVHSPER--------CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 170 ~~~~~~~~~--------~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
+.+.+...+ -...++.|...++ ...+|+++.-+.+++||.+
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~------------------------------ 234 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTR------------------------------ 234 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCc------------------------------
Confidence 777654322 1223455554433 6789999999999999988
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--C
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S 319 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~ 319 (1088)
...+++..|.--+.+|.++...|++.+++++..-+.+..+|++.++. .. ..+.+-.+.|.++..++ .
T Consensus 235 --~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--------~g-~~~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 235 --HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--------LG-CGLKGITGSIRSIHCHPTHP 303 (412)
T ss_pred --ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--------ec-cccCCccCCcceEEEcCCCc
Confidence 25678888888899999999999999999999999999999998633 33 25778889999999995 5
Q ss_pred EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC
Q 001391 320 FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 320 ~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
+++++|-|+.+||+|+ +.+++....-.. .+++|.+.++
T Consensus 304 ~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~ 342 (412)
T KOG3881|consen 304 VLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDD 342 (412)
T ss_pred eEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCC
Confidence 9999999999999999 545555433222 2566666543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-09 Score=112.78 Aligned_cols=255 Identities=14% Similarity=0.177 Sum_probs=167.7
Q ss_pred CcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 65 ~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
..+|..++|- .|++ .+.+++...+..+....+...... + ..............|..++..
T Consensus 55 ~~ris~l~~~-------~d~~-tevl~~r~~~~~~~~~~~~E~~~~-----s----~~~~~~~~~l~~~~I~gl~~~--- 114 (412)
T KOG3881|consen 55 LDRISSLLFG-------VDGE-TEVLNARSADDDLPKFVIEEFEIS-----S----SLDDAKTVSLGTKSIKGLKLA--- 114 (412)
T ss_pred hhhhhhheee-------cCCc-eeEeeccccCcccccccccCCccc-----c----ccccccccccccccccchhhc---
Confidence 3467788886 3332 124444456777777777643311 1 011223344555677777764
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCc----eEEEeccCCceeEEEEeeecCCCCCcEEEEEecC--CeEEEEEeccCccccC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY--NEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d--g~I~vwd~~~~~~~~~ 218 (1088)
| ..|++|-.+|.+.+|....+. .+..+..+ ..++.+.-+ ..+...+++|+.. ..+.+||++..
T Consensus 115 -d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~--~~~p~Iva~GGke~~n~lkiwdle~~----- 183 (412)
T KOG3881|consen 115 -D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQT--DTDPYIVATGGKENINELKIWDLEQS----- 183 (412)
T ss_pred -C-CEEEEEecCCcEEEEeccCCccccccceeeecC--CceeeeccC--CCCCceEecCchhcccceeeeecccc-----
Confidence 3 467788889999999998443 22222222 223344332 2334577789999 89999999811
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~--g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
-++|....-..-...+ .-.-+++++.|.+. ...|++++.-+.+|+||.+.++
T Consensus 184 ------------------~qiw~aKNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR------- 237 (412)
T KOG3881|consen 184 ------------------KQIWSAKNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR------- 237 (412)
T ss_pred ------------------eeeeeccCCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-------
Confidence 2222221100000000 01246778899887 7899999999999999999764
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
+++. .+.--..+|+++... +++|++|..-|.+..||. .++.+.. +++..| .|.+|..+|..++|+++|-|..+
T Consensus 238 RPV~--~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 238 RPVA--QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred ccee--EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeE
Confidence 3443 222334567776665 789999999999999999 5566555 788888 79999999999999999999999
Q ss_pred EEEEcCC
Q 001391 373 KVHQFQA 379 (1088)
Q Consensus 373 ~iwd~~~ 379 (1088)
||||+++
T Consensus 315 RIhD~kt 321 (412)
T KOG3881|consen 315 RIHDIKT 321 (412)
T ss_pred EEeeccc
Confidence 9999965
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-09 Score=114.35 Aligned_cols=281 Identities=15% Similarity=0.154 Sum_probs=180.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+...-+.|..+ || |+|+++.+ -+.|+|||+..-.+ .|.-|-...+..+.+.. .|- ...+..
T Consensus 50 ~p~ast~ik~s--~D----GqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLs------DD~---SK~v~L 112 (703)
T KOG2321|consen 50 MPTASTRIKVS--PD----GQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILS------DDY---SKSVFL 112 (703)
T ss_pred CccccceeEec--CC----CcEEEEecccCCceEEEEccccee--eeeecccccceeEEEec------cch---hhheEe
Confidence 34556789999 99 88887744 49999999886433 44433332343333320 221 144555
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
-.|++|.+..-... .+ -.. -...=.+++++. -..-|++++....|.-.+++.|..+..+
T Consensus 113 ~~DR~IefHak~G~-----hy----------~~R---IP~~GRDm~y~~---~scDly~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGR-----HY----------RTR---IPKFGRDMKYHK---PSCDLYLVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred ecCceeeehhhcCe-----ee----------eee---cCcCCccccccC---CCccEEEeecCcceEEEEcccccccccc
Confidence 56777766543210 00 000 011123455554 2223445555667888999999888776
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
..... .++++.. ++...+|++|+.+|.|-.||.++....+..+ ......
T Consensus 172 ~~~~~-~lN~v~i---n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~---------------------------~~~~v~ 220 (703)
T KOG2321|consen 172 ETDSG-ELNVVSI---NEEHGLLACGTEDGVVEFWDPRDKSRVGTLD---------------------------AASSVN 220 (703)
T ss_pred ccccc-cceeeee---cCccceEEecccCceEEEecchhhhhheeee---------------------------cccccC
Confidence 64432 2344443 4556799999999999999998433322111 001112
Q ss_pred CCC-----CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC----CCEEEEE
Q 001391 254 GHE-----GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITA 324 (1088)
Q Consensus 254 gh~-----~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg 324 (1088)
.|. ..|+++.|+.+|-.++.|..+|.|.|||++..+. +- ..-.+...+|..+.|. .+.++|.
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--------l~-~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--------LL-VKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--------ee-ecccCCccceeeecccccCCCceEEec
Confidence 233 3499999999999999999999999999998643 21 1223334567788885 2455554
Q ss_pred eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
....++|||- +|+....+..-.. +..+++-|++.+++++-.++.+..|=+
T Consensus 292 -Dk~~~kiWd~~~Gk~~asiEpt~~--lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 292 -DKRILKIWDECTGKPMASIEPTSD--LNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred -chHHhhhcccccCCceeeccccCC--cCceeeecCCceEEEecCCCcceeEEc
Confidence 3568999999 8998888876553 899999999999999998887777755
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-10 Score=120.77 Aligned_cols=212 Identities=16% Similarity=0.141 Sum_probs=139.3
Q ss_pred CceEEecCCCc----------ee-eeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEe---eeCCcceE
Q 001391 5 DLSEWRLDVGQ----------YL-GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQ---VFHGIRLH 69 (1088)
Q Consensus 5 ~i~iWdl~~g~----------~~-~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~---~~~~~~V~ 69 (1088)
.+.+|++..+. +. ..-+|-+|.+.++ ...+--|+.|-+ |.|++.|....+..+.|. .....+|.
T Consensus 145 ~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a-~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT 223 (636)
T KOG2394|consen 145 ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTA-TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVT 223 (636)
T ss_pred eEEEEEccCcchhccchhhhcccCCCCceeccccccc-CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceE
Confidence 36777777433 11 1133566642122 111456677775 899999976522211121 12235799
Q ss_pred EEEecccccccCCCccceeeEEEEECCCEEEEEEeccCC-CCCCCCCC----cccc--------ccceeeeccCCCCcEE
Q 001391 70 GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFEL-SPNSQYQP----ETCV--------NLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 70 ~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~-~~~~~~~~----~~~~--------~~~~~~~l~~h~~~I~ 136 (1088)
++.|.|. .++ ..+++..++.+.+||.+... .....++. +... .-.++..+.--.+.|+
T Consensus 224 ~ikWvpg-----~~~----~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in 294 (636)
T KOG2394|consen 224 CIKWVPG-----SDS----LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN 294 (636)
T ss_pred EEEEEeC-----CCc----eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence 9999854 443 67777889999999875321 11111111 1000 1122333333346899
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
..+|+| ||++||+.+.||.+||+|..+.+++..++.--+. +.++++ +||+.+|++|++|.-|.||.+.
T Consensus 295 ~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-LLCvcW---SPDGKyIvtGGEDDLVtVwSf~----- 362 (636)
T KOG2394|consen 295 EFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-LLCVCW---SPDGKYIVTGGEDDLVTVWSFE----- 362 (636)
T ss_pred ceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccc-eEEEEE---cCCccEEEecCCcceEEEEEec-----
Confidence 999999 9999999999999999999988776655533332 334444 6999999999999999999998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp 266 (1088)
..+.+.+-.||+.+|..|+|.|
T Consensus 363 ----------------------------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ----------------------------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ----------------------------cceEEEeccccccceeeEeecc
Confidence 7788888899999999999984
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-08 Score=110.86 Aligned_cols=301 Identities=17% Similarity=0.158 Sum_probs=184.7
Q ss_pred CCCceEEecCCCc-----eeeeeEEEEEeccCCCCCCCCEEEE-------Ee----CCeEEEEECCCCeeEEEEeeeCCc
Q 001391 3 KKDLSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLA-------GS----GSQVLLYDLEAGTLIRPFQVFHGI 66 (1088)
Q Consensus 3 d~~i~iWdl~~g~-----~~~~V~~v~fs~~pd~~~~~~~laa-------g~----d~~I~vwd~~tg~~~~~~~~~~~~ 66 (1088)
+..+.|.+..++. ....+.++.|| |- +.||.+ +. ...+++|+++++.....++....+
T Consensus 54 ~~~v~i~~~~~~~~~lt~~~~~~~~L~fS--P~----g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~ 127 (566)
T KOG2315|consen 54 NQVVKVFEIATLKVVLCVELKKTYDLLFS--PK----GNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN 127 (566)
T ss_pred CCeEEEEEccCCcEEEEeccceeeeeeec--cc----ccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc
Confidence 4557788877773 22368899999 98 788876 11 257889999997776666654332
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
-+..+|+ .|. .+.+---.+.+.+|++.... ...+. -|...|....++| .
T Consensus 128 -~W~~qfs-------~dE----sl~arlv~nev~f~~~~~f~--------------~~~~k--l~~~~i~~f~lSp---g 176 (566)
T KOG2315|consen 128 -GWVPQFS-------IDE----SLAARLVSNEVQFYDLGSFK--------------TIQHK--LSVSGITMLSLSP---G 176 (566)
T ss_pred -Ccccccc-------cch----hhhhhhhcceEEEEecCCcc--------------ceeee--eeccceeeEEecC---C
Confidence 2788888 552 33333457899999987422 11222 3567899999999 4
Q ss_pred C--CEEEE-----EEcCCcEEEEEcCCCceEEEeccCC--ceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEeccCccc
Q 001391 147 N--RSLAI-----GCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 147 ~--~~las-----gs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+ ..+|+ +|.-+.|+||.......-..+.... .+.-..+.+-.. ..+.++ ++...|.+=.
T Consensus 177 p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~-gt~LLvLastdVDktn~---------- 245 (566)
T KOG2315|consen 177 PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKL-GTALLVLASTDVDKTNA---------- 245 (566)
T ss_pred CCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccC-CceEEEEEEEeecCCCc----------
Confidence 3 35555 4667789999886332221111111 111112222111 122333 3333332100
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE--EECCCcEEEEEcCCCcccCCC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS--VSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s--~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
...+..++.+...+ .......+ ..+++|.++.|+|+++-++. |-.--.+.|+|++..-
T Consensus 246 -------------SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~----- 305 (566)
T KOG2315|consen 246 -------------SYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP----- 305 (566)
T ss_pred -------------cccccceEEEEEec-CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-----
Confidence 00011222222221 12222222 34799999999999987665 4456788999988741
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.+.-.+++-.++.|+ +++|+.+|.+ |.+-|||+ +.+++..+.... -+-+.|+|||.+++|+..
T Consensus 306 --------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 306 --------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEYFLTATT 374 (566)
T ss_pred --------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcEEEEEec
Confidence 223334555677887 7888888765 78999999 767777776554 356789999999998874
Q ss_pred ------CCCEEEEEcCCCCC
Q 001391 369 ------DSAIKVHQFQAFLP 382 (1088)
Q Consensus 369 ------Dg~I~iwd~~~~~~ 382 (1088)
|+.++||++.+..+
T Consensus 375 aPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cccEEecCCeEEEEecCcee
Confidence 78999999987544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-10 Score=121.60 Aligned_cols=190 Identities=16% Similarity=0.219 Sum_probs=149.9
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
-+.+.++. +|.+|+.|+.-|.|-.+|..++.+...+..-+ .+..+.|. .+..++|+ .....+.|||-.
T Consensus 132 PY~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~L---Hneq~~AV-AQK~y~yvYD~~--- 199 (545)
T KOG1272|consen 132 PYHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFL---HNEQFFAV-AQKKYVYVYDNN--- 199 (545)
T ss_pred CeeeeecC---CccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhh---cchHHHHh-hhhceEEEecCC---
Confidence 46688888 99999999999999999999999888876433 24455543 23344444 456778888865
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
+..++.++.| ..|..+.|.|.-=+|++++..|.++--|+..++.
T Consensus 200 -------------------------------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---- 243 (545)
T KOG1272|consen 200 -------------------------------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---- 243 (545)
T ss_pred -------------------------------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh----
Confidence 5556666655 5589999999988999999999999999999754
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
+. .+..-.+++..++-+ +..+-+|..+|+|.+|.. ..+++..+-.|.+ +|.+|++.++|++++|.|.|..
T Consensus 244 ----Va--~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 244 ----VA--SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred ----hH--HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccc
Confidence 22 233334455555555 567889999999999999 6678888889999 8999999999999999999999
Q ss_pred EEEEEcCC
Q 001391 372 IKVHQFQA 379 (1088)
Q Consensus 372 I~iwd~~~ 379 (1088)
++|||++.
T Consensus 317 ~kIWDlR~ 324 (545)
T KOG1272|consen 317 VKIWDLRN 324 (545)
T ss_pred eeEeeecc
Confidence 99999964
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-08 Score=100.82 Aligned_cols=313 Identities=13% Similarity=0.073 Sum_probs=184.8
Q ss_pred ceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccc
Q 001391 6 LSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77 (1088)
Q Consensus 6 i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~ 77 (1088)
+-|-|.++-+ ....|.-+.+. -| .-+++++- ++.|++|++...+-..++..... ++..+.||
T Consensus 31 lviRd~~tlq~~qlf~cldki~yieW~--ad----s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a-gls~~~WS--- 100 (447)
T KOG4497|consen 31 LVIRDSETLQLHQLFLCLDKIVYIEWK--AD----SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA-GLSSISWS--- 100 (447)
T ss_pred EEEeccchhhHHHHHHHHHHhhheeee--cc----ceeeeeeeeccceEEEEEeecceeEEEeccCCC-cceeeeEC---
Confidence 4455555544 23556677787 66 56677655 69999999998888888886444 79999999
Q ss_pred cccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC
Q 001391 78 CTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1088)
Q Consensus 78 ~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D 156 (1088)
|||+ .+|..+. +-.|.||.+.+.. ...+ +--...+..++|+| ||++.+.++.-
T Consensus 101 ----Pdgr---hiL~tseF~lriTVWSL~t~~-------------~~~~---~~pK~~~kg~~f~~---dg~f~ai~sRr 154 (447)
T KOG4497|consen 101 ----PDGR---HILLTSEFDLRITVWSLNTQK-------------GYLL---PHPKTNVKGYAFHP---DGQFCAILSRR 154 (447)
T ss_pred ----CCcc---eEeeeecceeEEEEEEeccce-------------eEEe---cccccCceeEEECC---CCceeeeeecc
Confidence 8883 4444444 8999999998643 1111 11123456677777 77766655431
Q ss_pred ------------------------------------CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 157 ------------------------------------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 157 ------------------------------------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
+.+-+||-.-...+...+.. ..+.++..+|.+.+++.|+
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~-----lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG-----LGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec-----cceeEEEeccccceEEeec
Confidence 11223332221111111111 1233444478899999999
Q ss_pred cCCeEEEEEeccCccccCCC-------------------------CCCCccCCCCCC--CCceeEecccccceeeeEEEe
Q 001391 201 IYNEIIVWKVDWEHVAPLLN-------------------------SPEGNHAHGSSS--DFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~-------------------------~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.|+.++|-+--+-+.-++.. +...+.+..... ....-.++..+.....++.++
T Consensus 230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 99999885533211111100 000000000000 000001122222222333333
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEE
Q 001391 254 ------GHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIIT 323 (1088)
Q Consensus 254 ------gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~s 323 (1088)
...-.+..++|++|..+++|-.+ -..+.+||++..+. ........+|....|++ ..++.
T Consensus 310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-----------~avLiQk~piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL-----------HAVLIQKHPIRAFEWDPGRPRLVV 378 (447)
T ss_pred CCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh-----------hhhhhhccceeEEEeCCCCceEEE
Confidence 23445778999999999988644 46899999988543 13333445788899983 34555
Q ss_pred EeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 324 AGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 324 g~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
+.....+++|...|..........- .|..+.|+.+|..++..+.|..
T Consensus 379 ctg~srLY~W~psg~~~V~vP~~GF-~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 379 CTGKSRLYFWAPSGPRVVGVPKKGF-NIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EcCCceEEEEcCCCceEEecCCCCc-eeeeEEecCCCcEEEEEcCCce
Confidence 5555669999998754444443333 6999999999999999998864
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-07 Score=106.27 Aligned_cols=271 Identities=10% Similarity=0.038 Sum_probs=161.5
Q ss_pred CCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceE-EEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCC
Q 001391 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (1088)
Q Consensus 35 ~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~-~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~ 111 (1088)
+.++++.. ++.|.|.|..+.+.++++..... +| .+.|+ |||+ .+.++..|+.|.++|+..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~h~~~~~s-------~Dgr---~~yv~~rdg~vsviD~~~----- 67 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGA--PHAGLKFS-------PDGR---YLYVANRDGTVSVIDLAT----- 67 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STT--EEEEEE-T-------T-SS---EEEEEETTSEEEEEETTS-----
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCC--ceeEEEec-------CCCC---EEEEEcCCCeEEEEECCc-----
Confidence 45565544 59999999999999999987443 45 46788 8884 666667799999999985
Q ss_pred CCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCCceEEEeccCC------ceeEEEE
Q 001391 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE------RCLLYSM 184 (1088)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~------~~~~~s~ 184 (1088)
.+.+++++.- ..-.++++++ ||++++++. .++.+.++|.++.+.+.++.... ......+
T Consensus 68 ----------~~~v~~i~~G-~~~~~i~~s~---DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 68 ----------GKVVATIKVG-GNPRGIAVSP---DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp ----------SSEEEEEE-S-SEEEEEEE-----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEE
T ss_pred ----------ccEEEEEecC-CCcceEEEcC---CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeE
Confidence 3466666543 3468899999 999888764 68999999999999988875321 1112222
Q ss_pred eeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee-eeEEEeCCCCCEEEE
Q 001391 185 KLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEGSIFRI 262 (1088)
Q Consensus 185 ~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~~V~~v 262 (1088)
.. ++... ++++--.-+.|.+-|.. ... ...............
T Consensus 134 v~---s~~~~~fVv~lkd~~~I~vVdy~---------------------------------d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 134 VA---SPGRPEFVVNLKDTGEIWVVDYS---------------------------------DPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp EE----SSSSEEEEEETTTTEEEEEETT---------------------------------TSSCEEEEEEE--TTEEEE
T ss_pred Ee---cCCCCEEEEEEccCCeEEEEEec---------------------------------cccccceeeeccccccccc
Confidence 11 34444 44554455777777766 111 122222344567789
Q ss_pred EEcCCCCEEEEE-ECCCcEEEEEcCCCcccCCCCceeeec--------eeeeccCc--ceEEEEECCCEEEEEeCCCcEE
Q 001391 263 EWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGS--------SVLYGHNA--RVWDCCLTDSFIITAGEDCTCR 331 (1088)
Q Consensus 263 ~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~--------~~~~~h~~--~I~~v~~~~~~l~sg~~Dg~i~ 331 (1088)
.|+|++++++.+ ..+..|-++|..+++. ...+.. ..-..|.. ++|...-.+...++.-....+.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~-----v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKL-----VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEE-----EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred ccCcccceeeecccccceeEEEeeccceE-----EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccc
Confidence 999999987664 5567899999888644 111110 01122322 3444443344443433344667
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEE----eCCCCEEEEEcCC
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA----GFDSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg----~~Dg~I~iwd~~~ 379 (1088)
+|+. +.+.++++....+ + .-+..+|+++++.+. ...++|.++|.++
T Consensus 253 v~d~~~wkvv~~I~~~G~-g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGG-G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp -STTTBTSEEEEEE-SSS-S---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred cchhhcCeEEEEEECCCC-c-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 8887 7788888887655 5 677889999999888 4458999999864
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.4e-09 Score=108.06 Aligned_cols=223 Identities=13% Similarity=0.154 Sum_probs=159.1
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEc-CCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~-~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
+..+.+.++||.+.|++...-| ...-+.+.+.|.++|||-- +.++.-..+.........++.+ ..+...|+.|
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~---~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y---~~e~~~L~vg 86 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIP---KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEY---VSESRRLYVG 86 (404)
T ss_pred chhhhhhhcCchhhhhhheecc---CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeee---eccceEEEEE
Confidence 3567889999999999999999 7778999999999999964 3444433333221222223333 3566788999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
-..|++.-+.+... . .+....+....|...|..+-|+-..+.+++++.|..
T Consensus 87 ~~ngtvtefs~sed----------------------------f-nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 87 QDNGTVTEFALSED----------------------------F-NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ 137 (404)
T ss_pred EecceEEEEEhhhh----------------------------h-hhcchhhhhhhhhcceeeEEecCCceeEEEeccccc
Confidence 99999988876510 0 022334455678888899888888888888888876
Q ss_pred EEEEEcCCCccc---------------------------------CCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 280 ARIWEVRAEYWK---------------------------------DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 280 v~iWd~~~~~~~---------------------------------~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+.---.+.+... .......+ .++.+|...+.+++|. +..+.+|
T Consensus 138 ~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i--~~~~~h~~~~~~l~Wd~~~~~LfSg 215 (404)
T KOG1409|consen 138 FAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLI--TTFNGHTGEVTCLKWDPGQRLLFSG 215 (404)
T ss_pred eEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceE--EEEcCcccceEEEEEcCCCcEEEec
Confidence 643333222111 00001222 3677899999999998 6899999
Q ss_pred eCCCcEEEEcCCC--ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCC
Q 001391 325 GEDCTCRVWGSDG--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 325 ~~Dg~i~vWd~~~--~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~ 381 (1088)
.+|..+.+||+.+ .....+.+|.. .|..+...+--+.|.+++.||.|.+|+++...
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 9999999999944 34556788888 49999888888899999999999999996543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-07 Score=101.86 Aligned_cols=295 Identities=14% Similarity=0.144 Sum_probs=167.1
Q ss_pred CCCCceEEecCCCceeee------e-EEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEe
Q 001391 2 GKKDLSEWRLDVGQYLGE------I-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~~~------V-~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~ 73 (1088)
+++.|.+.|..+.+..+. + ..+.|+ || ++++.+.+ |+.|.++|+.+++.+++++... ...++++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s--~D----gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~ 85 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFS--PD----GRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGIAV 85 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-T--T-----SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEec--CC----CCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceEEE
Confidence 468899999998873322 2 346789 99 88888877 7999999999999999998733 4799999
Q ss_pred cccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccC
Q 001391 74 NFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCN 145 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~ 145 (1088)
| +||+ .++++ ...+.+.++|.++ ++.++.+.. ...++..+..+|
T Consensus 86 s-------~DG~---~~~v~n~~~~~v~v~D~~t---------------le~v~~I~~~~~~~~~~~~Rv~aIv~s~--- 137 (369)
T PF02239_consen 86 S-------PDGK---YVYVANYEPGTVSVIDAET---------------LEPVKTIPTGGMPVDGPESRVAAIVASP--- 137 (369)
T ss_dssp ---------TTT---EEEEEEEETTEEEEEETTT-----------------EEEEEE--EE-TTTS---EEEEEE-S---
T ss_pred c-------CCCC---EEEEEecCCCceeEecccc---------------ccceeecccccccccccCCCceeEEecC---
Confidence 9 8883 33333 3489999999875 344444432 235788888888
Q ss_pred CCCEEEEEEcC-CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEeccCccccCCCCCC
Q 001391 146 GNRSLAIGCSD-NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 146 d~~~lasgs~D-g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
....++..-.| +.|-+-|....+.+..-........+...+ ++++.++++ ...++.|-++|..+
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~---dpdgry~~va~~~sn~i~viD~~~----------- 203 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF---DPDGRYFLVAANGSNKIAVIDTKT----------- 203 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE----TTSSEEEEEEGGGTEEEEEETTT-----------
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc---CcccceeeecccccceeEEEeecc-----------
Confidence 77755555454 777777877654433222122223344443 577877655 55678899999882
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEe----CCCCCEEEEE-------Ec--CCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----GHEGSIFRIE-------WS--SCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----gh~~~V~~v~-------~s--p~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
.+.+..+. .|...+..+- |. -.+...++.-....+.+|+....
T Consensus 204 ----------------------~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-- 259 (369)
T PF02239_consen 204 ----------------------GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-- 259 (369)
T ss_dssp ----------------------TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT--
T ss_pred ----------------------ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC--
Confidence 22222221 2333333321 11 11222222222234555666654
Q ss_pred cCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE----eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEE
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA----GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg----~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l 363 (1088)
+.++ .+...... .-+..+ ..++... ....+|.++|. +.+.+.++....+..+..+.|+++|+.+
T Consensus 260 ------kvv~--~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 260 ------KVVK--TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp ------SEEE--EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred ------eEEE--EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 3333 33333333 444445 3566655 45689999999 5566677755444358999999999966
Q ss_pred EEEeCC--CCEEEEEcCC
Q 001391 364 VTAGFD--SAIKVHQFQA 379 (1088)
Q Consensus 364 ~tg~~D--g~I~iwd~~~ 379 (1088)
.....+ +.|.++|..+
T Consensus 331 ~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EEEEE--TTEEEEEETTT
T ss_pred EEEEecCCCEEEEEECCC
Confidence 555443 3699999854
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.4e-08 Score=113.16 Aligned_cols=199 Identities=6% Similarity=0.077 Sum_probs=125.0
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEE---cCCcEEEEEcCCCceEEE--eccCCceeEEEEeeecCCCCCcEEEEE-ec
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIASG-TI 201 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs---~Dg~V~iWd~~~~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~ 201 (1088)
+..+...+.+.+|+| ||+.|+..+ .+..|.+|++.+++.... +..+.. ...+ +||+..|+.. +.
T Consensus 194 lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~----~~~~---SPDG~~La~~~~~ 263 (429)
T PRK03629 194 VHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG----APAF---SPDGSKLAFALSK 263 (429)
T ss_pred eecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC----CeEE---CCCCCEEEEEEcC
Confidence 334667899999999 999887654 245799999988764332 222222 2333 6889877754 44
Q ss_pred CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-C
Q 001391 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R 278 (1088)
Q Consensus 202 dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D-g 278 (1088)
+| .|.+||+. ++. ...+..+...+....|+|||+.|+..+.+ +
T Consensus 264 ~g~~~I~~~d~~---------------------------------tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g 309 (429)
T PRK03629 264 TGSLNLYVMDLA---------------------------------SGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG 309 (429)
T ss_pred CCCcEEEEEECC---------------------------------CCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCC
Confidence 54 48888886 232 23344445567889999999998877764 4
Q ss_pred cEEEE--EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEcccCCCCe
Q 001391 279 SARIW--EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 279 ~v~iW--d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h~~~~V 351 (1088)
...+| |+.++.. + .+..+........|+ +..|+..+.+ ..|.+||+.+.....+.... ..
T Consensus 310 ~~~Iy~~d~~~g~~------~-----~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~ 376 (429)
T PRK03629 310 RPQVYKVNINGGAP------Q-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LD 376 (429)
T ss_pred CceEEEEECCCCCe------E-----EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CC
Confidence 44555 5554321 1 222233344567777 5677665543 35888998444445554322 24
Q ss_pred EEEEEcCCCCEEEEEeCCCC---EEEEEcCCCCCC
Q 001391 352 WRCLYDSLSSLLVTAGFDSA---IKVHQFQAFLPG 383 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg~---I~iwd~~~~~~~ 383 (1088)
....|+|||+.|+..+.++. +.++++++...+
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 411 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence 56789999999999988765 566666554433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-07 Score=110.29 Aligned_cols=233 Identities=12% Similarity=0.041 Sum_probs=145.4
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE---CCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~---gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.+||...+.. ..+..+.. .+...+|| |||+ .++.++ ++..+.+|++..+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~-~~~~p~wS-------PDG~---~la~~s~~~g~~~i~i~dl~~G~------------- 234 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQ-PLMSPAWS-------PDGS---KLAYVTFESGRSALVIQTLANGA------------- 234 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCC-ceeeeEEc-------CCCC---EEEEEEecCCCcEEEEEECCCCC-------------
Confidence 799999875543 33433333 68999999 8883 333232 24578899987533
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+.+..+.++ +...+|+| ||+.|+.. +.++ .|.+||+.+++.......+. ......+ +|++..|+.
T Consensus 235 ~~~l~~~~~~---~~~~~~SP---DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~--~~~~~~w---SPDG~~I~f 303 (429)
T PRK03629 235 VRQVASFPRH---NGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS--NNTEPTW---FPDSQNLAY 303 (429)
T ss_pred eEEccCCCCC---cCCeEECC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC--CcCceEE---CCCCCEEEE
Confidence 2334444444 44689999 99987754 4444 58899998876544332221 2233333 688887766
Q ss_pred Eec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 199 GTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 199 g~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
.+. ++...+|.+... .+ ....+..+........|+|||++++..+.+
T Consensus 304 ~s~~~g~~~Iy~~d~~-------------------------------~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 304 TSDQAGRPQVYKVNIN-------------------------------GG-APQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred EeCCCCCceEEEEECC-------------------------------CC-CeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 554 455566654300 11 122333344456678999999998876543
Q ss_pred ---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc---EEEEcCCCceeEEEcccCCC
Q 001391 278 ---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT---CRVWGSDGKQLKMIKEHIGR 349 (1088)
Q Consensus 278 ---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~---i~vWd~~~~~~~~~~~h~~~ 349 (1088)
..|.+||+.++.. +.+ .. ........|+ +..|+.++.++. +.+++++|+....+..|.+
T Consensus 352 ~g~~~I~~~dl~~g~~------~~L-----t~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~- 418 (429)
T PRK03629 352 GGQQHIAKQDLATGGV------QVL-----TD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG- 418 (429)
T ss_pred CCCceEEEEECCCCCe------EEe-----CC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC-
Confidence 3588899877533 222 11 1122345676 677888887764 6777888888888888877
Q ss_pred CeEEEEEcC
Q 001391 350 GIWRCLYDS 358 (1088)
Q Consensus 350 ~V~~l~~~~ 358 (1088)
.+...+|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 588888876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-05 Score=97.12 Aligned_cols=295 Identities=12% Similarity=0.179 Sum_probs=174.6
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEE----ECCCC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLY----DLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vw----d~~tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
+.|.++.|. ++ ..-|..+. +|.|.+. |..+. +++..+.. +|.+++|| ||. +.+
T Consensus 76 ~~ivs~~yl--~d----~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~----GI~a~~WS-------PD~---Ell 135 (928)
T PF04762_consen 76 DKIVSFQYL--AD----SESLCIALASGDIILVREDPDPDEDEIEIVGSVDS----GILAASWS-------PDE---ELL 135 (928)
T ss_pred CcEEEEEec--cC----CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcC----cEEEEEEC-------CCc---CEE
Confidence 457777777 87 44455554 7888888 55443 34444443 79999999 776 366
Q ss_pred EEEECCCEEEEEEeccCCC----------------------CCCCCCCccccc-------cc----eeeeccCCCCcEEE
Q 001391 91 VALFGEKRVKLFELNFELS----------------------PNSQYQPETCVN-------LS----LVQSLPRLSHWVFD 137 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~----------------------~~~~~~~~~~~~-------~~----~~~~l~~h~~~I~~ 137 (1088)
+++.+++++.+-+-..+.. ...+|....... .. -...+. +.+.-..
T Consensus 136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ 214 (928)
T PF04762_consen 136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVR 214 (928)
T ss_pred EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceE
Confidence 6667788887775432110 001111100000 00 011222 4556677
Q ss_pred EEEecccCCCCEEEEEEc---C---CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec---CCeEEEE
Q 001391 138 VCFLKVCNGNRSLAIGCS---D---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEIIVW 208 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~---D---g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~---dg~I~vw 208 (1088)
+.|-. ||+++|+.+- . ..+|||+-+ |....+.+ +....--++++ .|.|.+||+.-. ...|.+|
T Consensus 215 ISWRG---DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~W---rPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 215 ISWRG---DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSW---RPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred EEECC---CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccC---CCCCCEEEEEEEcCCCcEEEEE
Confidence 88887 9999998764 2 579999975 55444333 33333333433 588999998754 3455666
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
.-+ +. ..++....+......|..+.|++|+..|+..-.|. |.+|...+.
T Consensus 287 ErN-----GL-------------------------rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 287 ERN-----GL-------------------------RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ecC-----Cc-------------------------EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 544 00 01121222224567899999999999999988775 999999886
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-----CCc--------eeEEEcc-------
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-----DGK--------QLKMIKE------- 345 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-----~~~--------~~~~~~~------- 345 (1088)
.. .++..........+..+.|+ +..|.....+|.+..++. .+. .+..+.+
T Consensus 336 HW-------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTp 408 (928)
T PF04762_consen 336 HW-------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTP 408 (928)
T ss_pred EE-------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEec
Confidence 43 12211222233344457887 456666666666655443 110 0111110
Q ss_pred ---------------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 346 ---------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 346 ---------------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.-..+|..++|++++..+++-..||.+.+|.+..
T Consensus 409 f~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 409 FRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1113699999999998899999999999999743
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-07 Score=93.97 Aligned_cols=206 Identities=15% Similarity=0.184 Sum_probs=135.6
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
-.+..++|++ .-..+|++..|-+|++||-.. ++...++......+.++++.+.+ +..++.|.. +.|.+|....
T Consensus 99 ~dlr~~aWhq---H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls--aselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQ---HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS--ASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred cceeeEeech---hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC--cceeeeeec-ceeEEEEcCc
Confidence 3577889988 666789999999999999877 55556666655567777775443 335666654 5689998761
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCccc
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWK 291 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~~~~ 291 (1088)
.-.... .++. .......+..-.|| ..|+++.|.+||..+++++. |..|+|||.+++..
T Consensus 172 tln~~r-----------------~~~~--~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~- 230 (445)
T KOG2139|consen 172 TLNANR-----------------NIRM--MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK- 230 (445)
T ss_pred cccccc-----------------cccc--ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-
Confidence 111100 0000 00011223344566 78999999999999999775 68899999999754
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.++ . .--.+.+.-+.|+ +.+|+.+.-|+..++|.. ..........-.+ .|...+|+|.|++|+-...
T Consensus 231 -----~pL---~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 231 -----IPL---I-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred -----ccc---c-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEc
Confidence 222 1 1233567889998 689999999999999976 2222222222334 4999999999986654442
Q ss_pred CCCEEEEEc
Q 001391 369 DSAIKVHQF 377 (1088)
Q Consensus 369 Dg~I~iwd~ 377 (1088)
|.-++|.+
T Consensus 301 -gsp~lysl 308 (445)
T KOG2139|consen 301 -GSPRLYSL 308 (445)
T ss_pred -CCceEEEE
Confidence 34456666
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00026 Score=89.50 Aligned_cols=418 Identities=13% Similarity=0.093 Sum_probs=220.1
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEE----EcCCC--ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW----DISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iW----d~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
..+.|.++.+.+ +...++.+..+|.|.+. +..+. +.+..+..+ +.++++ +||+.+|+..+.+++
T Consensus 74 ~~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~G----I~a~~W---SPD~Ella~vT~~~~ 143 (928)
T PF04762_consen 74 PNDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSG----ILAASW---SPDEELLALVTGEGN 143 (928)
T ss_pred CCCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCc----EEEEEE---CCCcCEEEEEeCCCE
Confidence 457899999999 88888889999999999 44433 334444444 444544 699999999999999
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+.+-+-. ..++....-+.... .....++.|....=.-+.
T Consensus 144 l~~mt~~----------------------------------fd~i~E~~l~~~~~-------~~~~~VsVGWGkKeTQF~ 182 (928)
T PF04762_consen 144 LLLMTRD----------------------------------FDPISEVPLDSDDF-------GESKHVSVGWGKKETQFH 182 (928)
T ss_pred EEEEecc----------------------------------ceEEEEeecCcccc-------CCCceeeeccCcccCccC
Confidence 9887644 12222221111000 001122222111100010
Q ss_pred cCCCcccC---CCCce-eeeceeeeccCcceEEEEEC--CCEEEEEeC---C---CcEEEEcCCCceeEEEcccCCCCeE
Q 001391 285 VRAEYWKD---SDSIE-EVGSSVLYGHNARVWDCCLT--DSFIITAGE---D---CTCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 285 ~~~~~~~~---~~~~~-~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~---D---g~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
-..++... .++.. .+..-.+. +...-..++|. |.++++.+. . +.+|||+.+|....+-..-.+ -=.
T Consensus 183 Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~g-Le~ 260 (928)
T PF04762_consen 183 GSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDG-LEG 260 (928)
T ss_pred cchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCC-ccC
Confidence 00010000 00000 00000222 44455678887 577777663 2 579999998876555443333 234
Q ss_pred EEEEcCCCCEEEEEeC---CCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc
Q 001391 353 RCLYDSLSSLLVTAGF---DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 429 (1088)
+++|.|.|++||+.-. ...|.+|.-++..... |.+. +......|..++|++
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge----------------F~l~----------~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE----------------FTLR----------FDPEEEKVIELAWNS 314 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee----------------EecC----------CCCCCceeeEEEECC
Confidence 7899999999998875 3456666655432111 1111 112335689999999
Q ss_pred CCeEEEEecCCeEEEEEeccCCcceeEEeeee--cCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcC
Q 001391 430 EDTLYIATNHGYLYHTKLCDMDSVNWNKILQV--SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT 507 (1088)
Q Consensus 430 ~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~ 507 (1088)
++.+|+..-...+. +|..++..|-.-... .....+..+.+++. +...+.+.+.+|.+..+++.-..
T Consensus 315 ds~iLAv~~~~~vq---LWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe-------~p~~L~v~t~~g~~~~~~~~~~v-- 382 (928)
T PF04762_consen 315 DSEILAVWLEDRVQ---LWTRSNYHWYLKQEIRFSSSESVNFVKWDPE-------KPLRLHVLTSNGQYEIYDFAWDV-- 382 (928)
T ss_pred CCCEEEEEecCCce---EEEeeCCEEEEEEEEEccCCCCCCceEECCC-------CCCEEEEEecCCcEEEEEEEEEE--
Confidence 99888876665555 677777777322222 22222333444443 44667777777888776653110
Q ss_pred cceeeeeeeeccccceeeeEEEeecC-CCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEE
Q 001391 508 PQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l 586 (1088)
.... ..++ |...+++-+ ...+++-.++...-+.+. ..+.......|.++
T Consensus 383 -------~~s~-----------~~~~~D~g~vaVID-G~~lllTpf~~a~VPPPM-----------s~~~l~~~~~v~~v 432 (928)
T PF04762_consen 383 -------SRSP-----------GSSPNDNGTVAVID-GNKLLLTPFRRAVVPPPM-----------SSYELELPSPVNDV 432 (928)
T ss_pred -------EecC-----------CCCccCceEEEEEe-CCeEEEecccccCCCchH-----------hceEEcCCCCcEEE
Confidence 0000 0111 222333332 224555544432110000 11222346679999
Q ss_pred EeeeCCCEEEEEcCCCcEEEEeCCccccc-ccccccccccCcc--eeecccccccceeEEEEEeccCCceEEEEecCC--
Q 001391 587 DASFEDEVLFCGDLRGNLVLFPLLRDLLN-DKSVALHVEVSPL--NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD-- 661 (1088)
Q Consensus 587 ~~spdg~~LatGs~dg~I~Iw~~~~~~~~-~~~~~~~~~l~~~--~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~D-- 661 (1088)
+|++++..+|+-..||+|.+|........ ...+.....+... ......-....+.++.|. .+...++....+
T Consensus 433 af~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 509 (928)
T PF04762_consen 433 AFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWL---NDDTLLVLSDSDSN 509 (928)
T ss_pred EEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEe---CCCEEEEEEecCcc
Confidence 99999988999999999999996653221 0001110111100 000000011468888888 343444444443
Q ss_pred -CeEEEEEeecC
Q 001391 662 -GCICYLEYDKD 672 (1088)
Q Consensus 662 -g~i~iw~~~~~ 672 (1088)
..+.++++...
T Consensus 510 ~~~i~~~~~~~~ 521 (928)
T PF04762_consen 510 QSKIVLVDIDDS 521 (928)
T ss_pred cceEEEEEeccC
Confidence 67777777443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-07 Score=95.89 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=141.6
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-----EEEeccC--CceeEE---------EEeeecCCCCCc
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-----ILEVHSP--ERCLLY---------SMKLWGDNLEAL 194 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-----~~~~~~~--~~~~~~---------s~~~~~~s~~~~ 194 (1088)
..+-|.++.|.. .|.+||||..+|.|.++.-..... ...++.| +...+- .++++. ..+..
T Consensus 24 eadiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~-~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD-DGNLA 99 (433)
T ss_pred hhcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC-CCCcc
Confidence 347799999999 999999999999999987654321 2222222 221221 223322 34456
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc-----ccceeeeEEE-eCCCCCEEEEEEcCCC
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ-----QHTAVNLFRL-VGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~gh~~~V~~v~~sp~g 268 (1088)
.+...+.|.+|++|.+.......... .....+....-..+++... .....+.+.+ .+|.-.|.++.++.|+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~---~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGY---NLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccc---cccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 67778899999999998433222100 0000001111111111110 0011222232 4799999999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC---CEEEEEeCCCcEEEEcCCCc-----ee
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGK-----QL 340 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~---~~l~sg~~Dg~i~vWd~~~~-----~~ 340 (1088)
..++|+ +|=.|.+|++.-... +...--++|..+..-+.-|++..|++ ++++-.+..|+|++-|+... ..
T Consensus 177 Et~lSA-DdLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ceEeec-cceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 999987 566799999875321 00011122222233344688889983 67888888999999998421 11
Q ss_pred EEEcccCC-----------CCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 341 KMIKEHIG-----------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 341 ~~~~~h~~-----------~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+..... ..|..+.|+++|+++++-.. -+|++||++
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 11111110 25788999999999987543 589999994
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=115.42 Aligned_cols=290 Identities=17% Similarity=0.207 Sum_probs=187.4
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC-eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
.+++.++.++ |. |+-+|.++.--+.|-|+... ..-+-+.......|-.++|+|. |.- +.-++.+.
T Consensus 24 ~~~~~a~si~--p~----grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h-----~a~---~~wiVsts 89 (1081)
T KOG0309|consen 24 DGGFNAVSIN--PS----GRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPH-----PAK---PYWIVSTS 89 (1081)
T ss_pred cCcccceeec--cc----cchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccC-----CCC---ceeEEecC
Confidence 4678899999 87 67677766544667787643 3433444334445788899965 332 37788888
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
.....+|++.... .......+.||...|+++.|+| .....+++++.|-.+..||+.+.....-...
T Consensus 90 ~qkaiiwnlA~ss------------~~aIef~lhghsraitd~n~~~--q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 90 NQKAIIWNLAKSS------------SNAIEFVLHGHSRAITDINFNP--QHPDVLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred cchhhhhhhhcCC------------ccceEEEEecCccceeccccCC--CCCcceeeccccccceeeeccCCCcceeeee
Confidence 8889999998654 1334456679999999999998 2446899999999999999987644222111
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
.-......+++. -.++..+| .+..+.|.+||.+ ....++..+++|
T Consensus 156 ~w~s~asqVkwn--yk~p~vla-sshg~~i~vwd~r--------------------------------~gs~pl~s~K~~ 200 (1081)
T KOG0309|consen 156 SWRSAASQVKWN--YKDPNVLA-SSHGNDIFVWDLR--------------------------------KGSTPLCSLKGH 200 (1081)
T ss_pred cccccCceeeec--ccCcchhh-hccCCceEEEecc--------------------------------CCCcceEEeccc
Confidence 111111122221 13344444 3455779999988 256788899999
Q ss_pred CCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEE---------
Q 001391 256 EGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFII--------- 322 (1088)
Q Consensus 256 ~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~--------- 322 (1088)
...|..++|.. ....+.+++.|++|+.||...... .-+ .......+||.-++. ..+.+
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~-------e~~--~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v 271 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT-------ESK--RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMV 271 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeeccccccc-------ccc--eeccccCcceeccccccCceeEeccccCCeee
Confidence 99999999975 335688999999999999876422 111 222233445555543 11111
Q ss_pred -EEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcC--------CC--CEEEEEeCCCCEEEEEcCC
Q 001391 323 -TAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDS--------LS--SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 323 -sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~--------dg--~~l~tg~~Dg~I~iwd~~~ 379 (1088)
---.+.....|+. ..+++..|.+|.. .|....|-. |. -.|+|=+.|..+++|-+..
T Consensus 272 ~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 272 PQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1112223334554 3467899999987 354444421 22 2799999999999999854
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-07 Score=92.75 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC
Q 001391 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~ 335 (1088)
..++.|++.+..++++-.+|.+.+-+...... +.++ ...+|...+|.+.|+ ++++++|+.||.+..||+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------e~vq--~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVL------EKVQ--TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeee------eecc--cccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 45788999999999999999988555444321 3333 778999999999998 789999999999999999
Q ss_pred C--CceeEE-EcccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcCC
Q 001391 336 D--GKQLKM-IKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 336 ~--~~~~~~-~~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
. ++.+.. -+-|.. +|.+|.-+| .+.+|+||+.|-.|++||.+.
T Consensus 196 R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred cCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 3 444433 456776 799998876 467999999999999999853
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-07 Score=108.41 Aligned_cols=232 Identities=13% Similarity=0.024 Sum_probs=138.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE---CCCEEEEEEeccCCCCCCCCCCcccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~---gd~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
.+|.+||... .....+..+.. .+...+|+ |||+ .++.++ +...|.+|++....
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~-~v~~p~wS-------pDg~---~la~~s~~~~~~~l~~~dl~~g~------------ 239 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAE-PILSPAWS-------PDGK---KLAYVSFERGRSAIYVQDLATGQ------------ 239 (433)
T ss_pred EEEEEECCCC-CCceEeecCCC-ccccccCC-------CCCC---EEEEEecCCCCcEEEEEECCCCC------------
Confidence 3699999864 44444554443 68899999 8873 333333 23579999987533
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.+.+.. +.+...+.+|+| ||+.|+ +.+.++ .|.+||+.+++... +..+. ....+..+ ++|+..|+
T Consensus 240 -~~~l~~---~~g~~~~~~~Sp---DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~-~~~~~~~~---spDG~~l~ 307 (433)
T PRK04922 240 -RELVAS---FRGINGAPSFSP---DGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF-GIDTEPTW---APDGKSIY 307 (433)
T ss_pred -EEEecc---CCCCccCceECC---CCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC-CCccceEE---CCCCCEEE
Confidence 223332 333455789999 998765 445555 59999998876533 32221 12233444 67888777
Q ss_pred EEe-cCCe--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE
Q 001391 198 SGT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1088)
Q Consensus 198 sg~-~dg~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~ 274 (1088)
..+ .+|. |.++++. .+. ...+..+.......+|+|+|++++..
T Consensus 308 f~sd~~g~~~iy~~dl~---------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 308 FTSDRGGRPQIYRVAAS---------------------------------GGS-AERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCCceEEEEECC---------------------------------CCC-eEEeecCCCCccCEEECCCCCEEEEE
Confidence 655 4555 4444544 111 22222233345578999999998876
Q ss_pred ECCC---cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEccc
Q 001391 275 SDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEH 346 (1088)
Q Consensus 275 s~Dg---~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h 346 (1088)
+.++ .|.+||+.+++. + .+. +........|+ +..|+..+.+ +.+.+++.++.....+..+
T Consensus 354 ~~~~~~~~I~v~d~~~g~~------~-----~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSV------R-----TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred ECCCCceeEEEEECCCCCe------E-----ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccC
Confidence 5443 689999877543 1 111 22223455777 5666655543 3577788887777777665
Q ss_pred CCCCeEEEEEcC
Q 001391 347 IGRGIWRCLYDS 358 (1088)
Q Consensus 347 ~~~~V~~l~~~~ 358 (1088)
.+ .+...+|+|
T Consensus 422 ~g-~~~~p~wsp 432 (433)
T PRK04922 422 DG-EVREPAWSP 432 (433)
T ss_pred CC-CCCCCccCC
Confidence 55 366677765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-07 Score=101.99 Aligned_cols=236 Identities=13% Similarity=0.091 Sum_probs=149.9
Q ss_pred eEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
-..|..+ |||+ +++|++- --.|++||+..-. +++.+++. ..|..+.... .|
T Consensus 54 st~ik~s-------~DGq---Y~lAtG~YKP~ikvydlanLS-------------LKFERhlD---ae~V~feiLs--DD 105 (703)
T KOG2321|consen 54 STRIKVS-------PDGQ---YLLATGTYKPQIKVYDLANLS-------------LKFERHLD---AEVVDFEILS--DD 105 (703)
T ss_pred cceeEec-------CCCc---EEEEecccCCceEEEEcccce-------------eeeeeccc---ccceeEEEec--cc
Confidence 5677777 8993 4444443 6899999998543 45555443 2333333222 25
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
-..++--..|.+|.+-.--...-...+.... ..++++. ++..++++ +....|+-++++
T Consensus 106 ~SK~v~L~~DR~IefHak~G~hy~~RIP~~G----RDm~y~~--~scDly~~-gsg~evYRlNLE--------------- 163 (703)
T KOG2321|consen 106 YSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG----RDMKYHK--PSCDLYLV-GSGSEVYRLNLE--------------- 163 (703)
T ss_pred hhhheEeecCceeeehhhcCeeeeeecCcCC----ccccccC--CCccEEEe-ecCcceEEEEcc---------------
Confidence 5556666778888775432221122222222 2344432 33333333 344567778887
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec-eeee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLY 305 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~-~~~~ 305 (1088)
.++.+..+....+.++++..++...+|++|+.||.|-.||.+.... ...+.. ....
T Consensus 164 ------------------qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-----v~~l~~~~~v~ 220 (703)
T KOG2321|consen 164 ------------------QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-----VGTLDAASSVN 220 (703)
T ss_pred ------------------ccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-----heeeecccccC
Confidence 6777777777779999999999999999999999999999988643 111110 1222
Q ss_pred ccCc-----ceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC-CCeEEEEEcCC--CCEEEEEeCCCCEEE
Q 001391 306 GHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSL--SSLLVTAGFDSAIKV 374 (1088)
Q Consensus 306 ~h~~-----~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~-~~V~~l~~~~d--g~~l~tg~~Dg~I~i 374 (1088)
.|.. .|+++.|+ |-.++.|..+|.+.+||+ ..+++. .+.|.. -+|..+.|.+. ++.|++. ....++|
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ki 298 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKI 298 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEec-chHHhhh
Confidence 2333 49999998 457999999999999999 444433 333432 36889999765 3455554 3568899
Q ss_pred EEcC
Q 001391 375 HQFQ 378 (1088)
Q Consensus 375 wd~~ 378 (1088)
||-.
T Consensus 299 Wd~~ 302 (703)
T KOG2321|consen 299 WDEC 302 (703)
T ss_pred cccc
Confidence 9984
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.1e-07 Score=105.03 Aligned_cols=200 Identities=12% Similarity=0.064 Sum_probs=127.2
Q ss_pred eeeccCCCCcEEEEEEecccCCCCEEEEEEc---CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEe
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGT 200 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~ 200 (1088)
.+.+..|...+.+.+|+| ||+.|+..+. +..|.+||+.+++... +..... ......+ +||+..|+ +.+
T Consensus 194 ~~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g-~~~~~~~---SPDG~~la~~~~ 265 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPG-MTFAPRF---SPDGRKVVMSLS 265 (435)
T ss_pred cEEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCC-cccCcEE---CCCCCEEEEEEe
Confidence 344557788999999999 9998887653 4689999998876532 221111 2223333 68887765 555
Q ss_pred cCCe--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-C
Q 001391 201 IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-D 277 (1088)
Q Consensus 201 ~dg~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-D 277 (1088)
.++. |.+||+. .+ ....+..+.+......|+|||+.++..+. +
T Consensus 266 ~~g~~~Iy~~d~~---------------------------------~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 266 QGGNTDIYTMDLR---------------------------------SG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred cCCCceEEEEECC---------------------------------CC-ceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 6665 6666765 22 23445556666778899999999887764 3
Q ss_pred C--cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEcccCCCC
Q 001391 278 R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRG 350 (1088)
Q Consensus 278 g--~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h~~~~ 350 (1088)
+ .|.+||+..+.. + .+..+...+....|+ +..|+....+ ..|.+|++++.....+.. .. .
T Consensus 312 g~~~Iy~~d~~g~~~------~-----~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~-~ 378 (435)
T PRK05137 312 GSPQLYVMNADGSNP------R-----RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-GF-L 378 (435)
T ss_pred CCCeEEEEECCCCCe------E-----EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-CC-C
Confidence 3 577778766432 1 222233445667787 5677665543 357888885555554432 22 3
Q ss_pred eEEEEEcCCCCEEEEEeCC------CCEEEEEcCC
Q 001391 351 IWRCLYDSLSSLLVTAGFD------SAIKVHQFQA 379 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~D------g~I~iwd~~~ 379 (1088)
+....|+|||+.|+..+.+ ..+.++++.+
T Consensus 379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 6788999999987765543 2456666654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-07 Score=107.91 Aligned_cols=198 Identities=13% Similarity=0.067 Sum_probs=122.6
Q ss_pred eccCCCCcEEEEEEecccCCCCEEEEEEc---CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecC
Q 001391 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY 202 (1088)
Q Consensus 127 ~l~~h~~~I~~v~f~p~~~d~~~lasgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~d 202 (1088)
.+..+...+.+.+|+| |++.|+..+. +..|.+||+.+++.......+ ....+..+ +|++..|+ +.+.+
T Consensus 198 ~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--g~~~~~~~---SpDG~~l~~~~s~~ 269 (433)
T PRK04922 198 TILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRELVASFR--GINGAPSF---SPDGRRLALTLSRD 269 (433)
T ss_pred EeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--CCccCceE---CCCCCEEEEEEeCC
Confidence 3446677899999999 9998888763 346999999887653322111 11223333 67887665 44555
Q ss_pred C--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCc
Q 001391 203 N--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRS 279 (1088)
Q Consensus 203 g--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~ 279 (1088)
| .|.+||+. ++. +..+..+.......+|+|||++++.++. ++.
T Consensus 270 g~~~Iy~~d~~---------------------------------~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 270 GNPEIYVMDLG---------------------------------SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR 315 (433)
T ss_pred CCceEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCC
Confidence 5 58888887 222 3344455555677899999999887764 444
Q ss_pred --EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcccCCCCeE
Q 001391 280 --ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 280 --v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
|.++++.+++. +.+ +. +.......+|+ +..|+..+.++ .|.+||+.+.....+.. .. ...
T Consensus 316 ~~iy~~dl~~g~~------~~l---t~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-~~-~~~ 382 (433)
T PRK04922 316 PQIYRVAASGGSA------ERL---TF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-GS-LDE 382 (433)
T ss_pred ceEEEEECCCCCe------EEe---ec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-CC-CCC
Confidence 55566655422 111 22 22334457787 56776654333 58999994443444432 22 245
Q ss_pred EEEEcCCCCEEEEEeCC---CCEEEEEcCC
Q 001391 353 RCLYDSLSSLLVTAGFD---SAIKVHQFQA 379 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~D---g~I~iwd~~~ 379 (1088)
...|+|||++|+..+.+ +.+.++++.+
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 67899999987766653 3455666654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-06 Score=97.13 Aligned_cols=263 Identities=12% Similarity=0.066 Sum_probs=151.4
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceE-EEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~-~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
+..+.++. ++.|.-+|..+|+++..+..... +. .... .++ .+++...++.+..+|.+++.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~v--------~~~----~v~v~~~~g~l~ald~~tG~---- 126 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVGA--------DGG----LVFVGTEKGEVIALDAEDGK---- 126 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceEE--------cCC----EEEEEcCCCEEEEEECCCCc----
Confidence 34555555 68999999999999888775332 21 1221 222 56666678999999987543
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE----EEEeeec
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKLWG 188 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~----~s~~~~~ 188 (1088)
.+..... .+.+.+.-.. .+..++.++.++.+..||..+++.+.+......... .+..+
T Consensus 127 -----------~~W~~~~-~~~~~~~p~v----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-- 188 (377)
T TIGR03300 127 -----------ELWRAKL-SSEVLSPPLV----ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-- 188 (377)
T ss_pred -----------Eeeeecc-CceeecCCEE----ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--
Confidence 1111111 1222221111 234566777899999999999998777654322110 01111
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC--CCEEEEEEcC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSS 266 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~--~~V~~v~~sp 266 (1088)
.+..++.+..+|.+..+|..+++.. |... .....+.. ..+..+.-+|
T Consensus 189 ---~~~~v~~~~~~g~v~ald~~tG~~~-----------------------W~~~-----~~~~~g~~~~~~~~~~~~~p 237 (377)
T TIGR03300 189 ---ADGGVLVGFAGGKLVALDLQTGQPL-----------------------WEQR-----VALPKGRTELERLVDVDGDP 237 (377)
T ss_pred ---ECCEEEEECCCCEEEEEEccCCCEe-----------------------eeec-----cccCCCCCchhhhhccCCcc
Confidence 1236777888899999998732211 1100 00000000 0000000011
Q ss_pred --CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 267 --CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 267 --~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
.+..++.++.++.++.||..+++. +- ... . .........++.++.++.||.+..+|. +|+.+...
T Consensus 238 ~~~~~~vy~~~~~g~l~a~d~~tG~~--------~W--~~~-~-~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 238 VVDGGQVYAVSYQGRVAALDLRSGRV--------LW--KRD-A-SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEECCEEEEEEcCCEEEEEECCCCcE--------EE--eec-c-CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 356788888899999999988632 11 111 1 112233345788888999999999999 78877665
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.........+... .+..|++++.||.+.++|..
T Consensus 306 ~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 306 DELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 3322212233333 35688999999999999984
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-07 Score=92.51 Aligned_cols=270 Identities=16% Similarity=0.107 Sum_probs=160.6
Q ss_pred CeEEEEECCCCeeEE--EEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCcccc
Q 001391 44 SQVLLYDLEAGTLIR--PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~--~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
|.+.+|++.+-+.+. +++.-....++.|.|+-. ..+| +..++. -..+.|.++....... . .
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~----~~~g---~~~l~~a~a~G~i~~~r~~~~~s-s--------~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIR----ETDG---DFNLLDAHARGQIQLYRNDEDES-S--------V 109 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeec----cCCc---cceeeeccccceEEEEeecccee-e--------e
Confidence 368889887765443 444333345778888622 1333 233333 4489999998774320 0 0
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE--EEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.++.+...+--...-.++.|++ .+..++++-.+|.+.+-+....... +..+.|+. .+|.+.|-. .+.+++++
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-E~Wta~f~~--~~pnlvyt 183 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-EAWTAKFSD--KEPNLVYT 183 (339)
T ss_pred eecccchhhhhheeeeEEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccce-eeeeeeccc--CCCceEEe
Confidence 1111111111111346788888 7888999988999986555444332 34555543 466666643 34579999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDD 277 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~D 277 (1088)
|+.|+.+..||++. + .....+..+-|...|.+|.-+| .+.+++||+.|
T Consensus 184 GgDD~~l~~~D~R~----p---------------------------~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRI----P---------------------------KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred cCCCceEEEEEecC----C---------------------------cceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence 99999999999981 0 1222233567889999998886 57789999999
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC---EEEEEeCCCcEEEEcCC---Cc---eeEEEcccCC
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS---FIITAGEDCTCRVWGSD---GK---QLKMIKEHIG 348 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~---~l~sg~~Dg~i~vWd~~---~~---~~~~~~~h~~ 348 (1088)
-.|++||.++-. +++. ...-.+.||.+..++. .++.++.-.-.+|-+.+ .+ .+...+.|..
T Consensus 233 e~i~~~DtRnm~-------kPl~---~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 233 ECIRVLDTRNMG-------KPLF---KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred cceeeeehhccc-------Cccc---cCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence 999999998642 2222 1223378999998842 33444444445666652 22 2233344443
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCCEE-EEEc
Q 001391 349 RGIWRCLYDSLSSLLVTAG-FDSAIK-VHQF 377 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~-~Dg~I~-iwd~ 377 (1088)
-+..-.|......|+|++ .|+.++ +|-.
T Consensus 303 -l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 303 -LCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred -eeeccccccccceeeeeeccccceeeeeee
Confidence 233334433335678865 466644 6643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-07 Score=104.32 Aligned_cols=194 Identities=12% Similarity=0.033 Sum_probs=121.0
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcC---CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEec
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (1088)
+.+..+...+.+.+|+| ||+.|+..+.+ ..|.+||+.+++.......+ . ......+ +||+..|+ +.+.
T Consensus 189 ~~l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g-~~~~~~~---SPDG~~la~~~~~ 260 (427)
T PRK02889 189 QSALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-G-SNSAPAW---SPDGRTLAVALSR 260 (427)
T ss_pred eEeccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-C-CccceEE---CCCCCEEEEEEcc
Confidence 33446778899999999 99988877642 45999999888654322111 1 1223333 68888776 5677
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSA 280 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v 280 (1088)
+|...||.+.. .......+..+.+......|+|||+.++..+. ++..
T Consensus 261 ~g~~~Iy~~d~--------------------------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~ 308 (427)
T PRK02889 261 DGNSQIYTVNA--------------------------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAP 308 (427)
T ss_pred CCCceEEEEEC--------------------------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCc
Confidence 88878877650 11223444555555677889999998886664 4667
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcccCCCCeEEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCL 355 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~h~~~~V~~l~ 355 (1088)
.+|.+..... ..+.+ ...+ .......|+ +++|+..+.++ .|.+||+.+.....+.... ......
T Consensus 309 ~Iy~~~~~~g----~~~~l---t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~ 377 (427)
T PRK02889 309 QIYRMPASGG----AAQRV---TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPS 377 (427)
T ss_pred EEEEEECCCC----ceEEE---ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCce
Confidence 7776543211 01111 2222 223356677 67777666554 5999999443344444332 246789
Q ss_pred EcCCCCEEEEEeCCC
Q 001391 356 YDSLSSLLVTAGFDS 370 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg 370 (1088)
|+|||+.|+..+.++
T Consensus 378 ~spdg~~l~~~~~~~ 392 (427)
T PRK02889 378 FAPNGRYILYATQQG 392 (427)
T ss_pred ECCCCCEEEEEEecC
Confidence 999999887777544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-06 Score=102.88 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=137.9
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE---CCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~---gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.++|... .....+..+.. .+...+|+ |||+ .++.++ ++..|.+|++....
T Consensus 183 ~l~~~d~dg-~~~~~lt~~~~-~v~~p~wS-------pDG~---~lay~s~~~g~~~i~~~dl~~g~------------- 237 (435)
T PRK05137 183 RLAIMDQDG-ANVRYLTDGSS-LVLTPRFS-------PNRQ---EITYMSYANGRPRVYLLDLETGQ------------- 237 (435)
T ss_pred EEEEECCCC-CCcEEEecCCC-CeEeeEEC-------CCCC---EEEEEEecCCCCEEEEEECCCCc-------------
Confidence 899999754 44455555444 69999999 8883 333333 25689999987533
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+ .+..+.+.+...+|+| ||+.|+ +.+.++. |.+||+.+++... +..+. ....+..+ +||+..|+.
T Consensus 238 ~~---~l~~~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~-~~~~~~~~---spDG~~i~f 306 (435)
T PRK05137 238 RE---LVGNFPGMTFAPRFSP---DGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP-AIDTSPSY---SPDGSQIVF 306 (435)
T ss_pred EE---EeecCCCcccCcEECC---CCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC-CccCceeE---cCCCCEEEE
Confidence 12 2334556778899999 998765 5555555 7777888776533 33222 12223333 688887776
Q ss_pred Ee-cCC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 199 GT-IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 199 g~-~dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
.+ .+| .|.++|+. .+ ....+..+.+.+....|+|+|++|+..+
T Consensus 307 ~s~~~g~~~Iy~~d~~---------------------------------g~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 307 ESDRSGSPQLYVMNAD---------------------------------GS-NPRRISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EECCCCCCeEEEEECC---------------------------------CC-CeEEeecCCCcccCeEECCCCCEEEEEE
Confidence 55 333 56666765 22 2233333455667789999999998776
Q ss_pred CC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC------CcEEEEcCCCceeEEEc
Q 001391 276 DD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED------CTCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 276 ~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D------g~i~vWd~~~~~~~~~~ 344 (1088)
.+ ..|.+||+..+.. +.+ .....+....|+ +..|+..+.+ ..+.+.++++.....+.
T Consensus 353 ~~~~~~~i~~~d~~~~~~------~~l------t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGE------RIL------TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred cCCCceEEEEEECCCCce------Eec------cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 54 3577888755321 111 112235667787 4565554432 25777777665555554
Q ss_pred ccCCCCeEEEEEcC
Q 001391 345 EHIGRGIWRCLYDS 358 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~ 358 (1088)
. .+ .+...+|+|
T Consensus 421 ~-~~-~~~~p~Wsp 432 (435)
T PRK05137 421 T-PG-DASDPAWSP 432 (435)
T ss_pred C-CC-CccCcccCC
Confidence 2 33 255556655
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.4e-07 Score=91.72 Aligned_cols=147 Identities=14% Similarity=0.268 Sum_probs=102.1
Q ss_pred EEEEeccCCCCCCCCEEEEEeC-----------CeEEEEECC-CCeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 22 ALCFVHLPSHLSSLPFLLAGSG-----------SQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~d-----------~~I~vwd~~-tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
.+.++ |. |.+|++-.+ +...+|-+. .+..+..+.......|+.++|+ |+|. .
T Consensus 10 ~~~W~--~~----G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~Ws-------P~g~---~ 73 (194)
T PF08662_consen 10 KLHWQ--PS----GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWS-------PNGN---E 73 (194)
T ss_pred EEEec--cc----CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEEC-------cCCC---E
Confidence 45667 76 666665221 345555552 2344555555444469999999 7773 5
Q ss_pred EEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC---CcEEEEEc
Q 001391 90 EVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDI 164 (1088)
Q Consensus 90 ~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---g~V~iWd~ 164 (1088)
++++.| ++.|.+||++ .+.+..+. ...+..+.|+| +|++|++|+.+ |.|.+||.
T Consensus 74 favi~g~~~~~v~lyd~~----------------~~~i~~~~--~~~~n~i~wsP---~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 74 FAVIYGSMPAKVTLYDVK----------------GKKIFSFG--TQPRNTISWSP---DGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred EEEEEccCCcccEEEcCc----------------ccEeEeec--CCCceEEEECC---CCCEEEEEEccCCCcEEEEEEC
Confidence 555555 5799999996 24455543 46678999999 99999998754 56999999
Q ss_pred CCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec------CCeEEEEEec
Q 001391 165 SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVD 211 (1088)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~------dg~I~vwd~~ 211 (1088)
++.+.+.+...+. ...+.+ +|+|.++++++. |+.++||+..
T Consensus 133 ~~~~~i~~~~~~~---~t~~~W---sPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 133 RKKKKISTFEHSD---ATDVEW---SPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCEEeeccccCc---EEEEEE---cCCCCEEEEEEeccceeccccEEEEEec
Confidence 9888887765442 234444 799999998763 7889999986
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-06 Score=103.14 Aligned_cols=234 Identities=11% Similarity=0.029 Sum_probs=136.0
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCcccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
..|.++|.. |.....+..+.. .+...+|+ |||+ .++.++. ...|.+||+..+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~-~v~~p~wS-------PDG~---~la~~s~~~~~~~I~~~dl~~g~------------ 231 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPE-PIISPAWS-------PDGT---KLAYVSFESKKPVVYVHDLATGR------------ 231 (427)
T ss_pred cEEEEECCC-CCCceEeccCCC-CcccceEc-------CCCC---EEEEEEccCCCcEEEEEECCCCC------------
Confidence 468888864 444444544444 68899999 8873 3333332 2469999987543
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEc--CCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDI--SNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
...+.. ..+.+.+.+|+| ||+.|+ +.+.++...||.+ ..+. ...+..+. ....+..+ ++|+..|+
T Consensus 232 -~~~l~~---~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~~~~~~~w---SpDG~~l~ 299 (427)
T PRK02889 232 -RRVVAN---FKGSNSAPAWSP---DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS-GIDTEPFF---SPDGRSIY 299 (427)
T ss_pred -EEEeec---CCCCccceEECC---CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC-CCCcCeEE---cCCCCEEE
Confidence 223332 334566899999 998776 5667887777665 3333 33443322 12223333 68888776
Q ss_pred EEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 198 SGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 198 sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
..+ ..|...+|.+... .+. ...+..+.......+|+|+|++++..+.
T Consensus 300 f~s~~~g~~~Iy~~~~~-------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 300 FTSDRGGAPQIYRMPAS-------------------------------GGA-AQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEecCCCCcEEEEEECC-------------------------------CCc-eEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 544 4567777776500 111 1112222233446789999999988776
Q ss_pred CC---cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC-Cc--EEEEcCCCceeEEEcccCC
Q 001391 277 DR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CT--CRVWGSDGKQLKMIKEHIG 348 (1088)
Q Consensus 277 Dg---~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D-g~--i~vWd~~~~~~~~~~~h~~ 348 (1088)
++ .|.+||+.+++. + .+.. ........|+ +..|+..+.+ |. +.+.+.+|+....+..+.+
T Consensus 348 ~~g~~~I~v~d~~~g~~------~-----~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 348 VGGAFKLYVQDLATGQV------T-----ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred cCCcEEEEEEECCCCCe------E-----EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCC
Confidence 54 699999987533 1 1111 1223456777 4566555543 33 4444556776666665655
Q ss_pred CCeEEEEEcC
Q 001391 349 RGIWRCLYDS 358 (1088)
Q Consensus 349 ~~V~~l~~~~ 358 (1088)
.+...+|+|
T Consensus 416 -~~~~p~wsp 424 (427)
T PRK02889 416 -DVREPSWGP 424 (427)
T ss_pred -CCCCCccCC
Confidence 366667766
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-05 Score=87.94 Aligned_cols=265 Identities=11% Similarity=0.020 Sum_probs=161.2
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE---------CCCEEEEEEeccCCCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---------GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~---------gd~~v~iw~l~~~~~~~~~~ 114 (1088)
++|.|.|..+++.+.++..... -+++ +| ||++ ..+++.. .+..|.+||..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~s-------pDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t~------- 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VA-------SDGS--FFAHASTVYSRIARGKRTDYVEVIDPQTH------- 87 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-EC-------CCCC--EEEEEeccccccccCCCCCEEEEEECccC-------
Confidence 7999999999999999987443 4555 88 7874 3455556 5789999999863
Q ss_pred CCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEE-c-CCcEEEEEcCCCceEEEeccCCceeEEEEe
Q 001391 115 QPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGC-S-DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs-~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~ 185 (1088)
+.++.+.- ....-..++++| ||++|++.. . ++.|.+.|+.+++.+.++.-+....+|..
T Consensus 88 --------~~~~~i~~p~~p~~~~~~~~~~~~ls~---dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t- 155 (352)
T TIGR02658 88 --------LPIADIELPEGPRFLVGTYPWMTSLTP---DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT- 155 (352)
T ss_pred --------cEEeEEccCCCchhhccCccceEEECC---CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe-
Confidence 33333331 122345788999 999888765 3 79999999999999999887665555542
Q ss_pred eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEE-EE
Q 001391 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI-EW 264 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v-~~ 264 (1088)
+.+..+ +-+.||......+.... +. .......+.+-+..++.= .|
T Consensus 156 ----~e~~~~--~~~~Dg~~~~v~~d~~g---------------------~~-------~~~~~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 156 ----ANDTFF--MHCRDGSLAKVGYGTKG---------------------NP-------KIKPTEVFHPEDEYLINHPAY 201 (352)
T ss_pred ----cCCccE--EEeecCceEEEEecCCC---------------------ce-------EEeeeeeecCCccccccCCce
Confidence 122222 23345555544443100 00 000000111101111110 34
Q ss_pred cC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee-----ccCcceEEEEEC--CCEEEEEe----------C
Q 001391 265 SS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----GHNARVWDCCLT--DSFIITAG----------E 326 (1088)
Q Consensus 265 sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~-----~h~~~I~~v~~~--~~~l~sg~----------~ 326 (1088)
.+ +|+++....+ |+|.+-|+....... ...+...... -....+.-++++ ++.++... .
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~---~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKF---LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCccee---cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 55 7777766666 999999976643210 1111100110 022333447887 45555532 1
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe-CCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~-~Dg~I~iwd~~~ 379 (1088)
.+.|.++|. +++.+..+..-. .++.++++||++ +|++.. .++.|.++|..+
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 247999999 777787776432 599999999999 877666 578899999854
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.6e-07 Score=91.60 Aligned_cols=155 Identities=14% Similarity=0.273 Sum_probs=103.1
Q ss_pred EEEEEecccCCCCEEEEEEc----------CCcEEEEEcCC-CceEEEeccCCceeEEEEeeecCCCCCcEEEE--EecC
Q 001391 136 FDVCFLKVCNGNRSLAIGCS----------DNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIAS--GTIY 202 (1088)
Q Consensus 136 ~~v~f~p~~~d~~~lasgs~----------Dg~V~iWd~~~-~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s--g~~d 202 (1088)
..+.|+| +|++|++-.. -+...+|.++. ......+.......+..+++ +|++..+|. |..+
T Consensus 9 ~~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~W---sP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAW---SPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEE---CcCCCEEEEEEccCC
Confidence 3567788 8876655332 12355555532 23344443333333666666 677777544 5567
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC---Cc
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---RS 279 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D---g~ 279 (1088)
+.|.+||++ ...+..+. ...+..|.|+|+|+++++++.+ |.
T Consensus 83 ~~v~lyd~~----------------------------------~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 83 AKVTLYDVK----------------------------------GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred cccEEEcCc----------------------------------ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence 899999986 33444443 5677899999999999998754 66
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC------CCcEEEEcCCCceeEEEc
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE------DCTCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~------Dg~i~vWd~~~~~~~~~~ 344 (1088)
|.+||.++. +.+ ....| ..+..++|+ +.+|+++.. |..++||+..|+.+....
T Consensus 127 l~~wd~~~~--------~~i---~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 127 LEFWDVRKK--------KKI---STFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEECCCC--------EEe---ecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 999999974 333 22233 347899998 688888764 788999999998776543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.9e-06 Score=89.46 Aligned_cols=286 Identities=13% Similarity=0.176 Sum_probs=179.0
Q ss_pred ceEEecCCCc-----eeeeeEEEEEeccCCCCCCCCEEEEEeC-C---------------eEEEEECCCCeeEEEEeeeC
Q 001391 6 LSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGSG-S---------------QVLLYDLEAGTLIRPFQVFH 64 (1088)
Q Consensus 6 i~iWdl~~g~-----~~~~V~~v~fs~~pd~~~~~~~laag~d-~---------------~I~vwd~~tg~~~~~~~~~~ 64 (1088)
|.+|.-.... ....|.-+.|| |. ++||.+=+. + .+.|||+.+|.++..|.+..
T Consensus 55 V~~~~g~~~~~l~~~~~~~V~~~~fS--P~----~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~ 128 (561)
T COG5354 55 VECWGGPSKAKLVRFRHPDVKYLDFS--PN----EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS 128 (561)
T ss_pred eEEccccchhheeeeecCCceecccC--cc----cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC
Confidence 5666644433 23568899999 99 999998442 2 49999999999999998744
Q ss_pred Ccc--eE-EEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 65 GIR--LH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 65 ~~~--V~-~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
. + .+ -++|+ -+. .++|---...+.|+++. +.... -..+.++ ...|....|+
T Consensus 129 q-~~~~Wp~~k~s-------~~D----~y~ARvv~~sl~i~e~t-~n~~~-----------~p~~~lr--~~gi~dFsis 182 (561)
T COG5354 129 Q-PYLGWPVLKFS-------IDD----KYVARVVGSSLYIHEIT-DNIEE-----------HPFKNLR--PVGILDFSIS 182 (561)
T ss_pred C-cccccceeeee-------ecc----hhhhhhccCeEEEEecC-Ccccc-----------Cchhhcc--ccceeeEEec
Confidence 3 3 34 56777 332 44444457889999983 32111 1112222 3568888999
Q ss_pred cccCCCCEEEE-----EEcCCcEEEEEcCCCceEEE--eccCCceeEEEEeeecCCCCCcEEEE--Ee-------c--CC
Q 001391 142 KVCNGNRSLAI-----GCSDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIAS--GT-------I--YN 203 (1088)
Q Consensus 142 p~~~d~~~las-----gs~Dg~V~iWd~~~~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~s--g~-------~--dg 203 (1088)
|.. ++..||. ++.++++++|.+..+..+.+ +..-..+ .+.+. +.|..++. -+ . ..
T Consensus 183 P~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-----qLkW~-~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 183 PEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-----QLKWQ-VLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred CCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-----EEEEe-cCCceEEEEEEEeeecccceeccc
Confidence 932 3444554 46788999999986655433 2221121 11111 22333221 11 1 13
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE--ECCCcEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV--SDDRSAR 281 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~--s~Dg~v~ 281 (1088)
++.++++. ...+.....-.++|...+|.|.++.+++. ..+..+.
T Consensus 256 nLyl~~~~----------------------------------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 256 NLYLLRIT----------------------------------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred eEEEEeec----------------------------------ccccceeccccccceeeeecccCCceeEEeccccccee
Confidence 44555543 22233333568999999999999876654 4788899
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCce--eEEEcccCCCCeEEE
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQ--LKMIKEHIGRGIWRC 354 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~--~~~~~~h~~~~V~~l 354 (1088)
++|++.. .........=..+.|+ ..+++.++.| |.+-+||..++. +..+.+.. ..-+
T Consensus 302 ~~~lr~N-------------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n---~s~~ 365 (561)
T COG5354 302 VFDLRGN-------------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN---TSYC 365 (561)
T ss_pred ecccccc-------------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC---ceEe
Confidence 9998874 1344444444556676 5788887766 679999995543 33455443 4567
Q ss_pred EEcCCCCEEEEEe------CCCCEEEEEcCCC
Q 001391 355 LYDSLSSLLVTAG------FDSAIKVHQFQAF 380 (1088)
Q Consensus 355 ~~~~dg~~l~tg~------~Dg~I~iwd~~~~ 380 (1088)
.|+||++++.+.. .|..|+||++.+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 8999999887764 4889999999654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-05 Score=87.75 Aligned_cols=286 Identities=10% Similarity=0.078 Sum_probs=181.3
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe---------------eEEEEeeeCCcceEEEEecccccccC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---------------LIRPFQVFHGIRLHGISCNFINCTEG 81 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~---------------~~~~~~~~~~~~V~~i~~s~~~~~~~ 81 (1088)
....|++|. .. ..|+|+|+ ||.++|-.+.+.. .-.++.+|.+ .|.-+.|.
T Consensus 15 vkL~c~~WN--ke----~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWN------- 80 (1189)
T KOG2041|consen 15 VKLHCAEWN--KE----SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWN------- 80 (1189)
T ss_pred ceEEEEEEc--cc----CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEec-------
Confidence 456799999 76 67999987 8999999875421 1235566665 79999998
Q ss_pred CCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEE
Q 001391 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1088)
Q Consensus 82 ~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~ 160 (1088)
... ..|.+++ +|-|.||-+-.+. +-....-.....-|.++.|+. ||+.++....||.|.
T Consensus 81 e~~----QKLTtSDt~GlIiVWmlykgs-------------W~EEMiNnRnKSvV~SmsWn~---dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 81 ENN----QKLTTSDTSGLIIVWMLYKGS-------------WCEEMINNRNKSVVVSMSWNL---DGTKICIVYEDGAVI 140 (1189)
T ss_pred ccc----ccccccCCCceEEEEeeeccc-------------HHHHHhhCcCccEEEEEEEcC---CCcEEEEEEccCCEE
Confidence 333 6777776 8999999887533 111111223446799999999 999999999999988
Q ss_pred EEEcCCCceE-EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 161 VWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 161 iWd~~~~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
+=.++..+.. +.+++.. +..+.+ ++|...+..+-..|.+.++|.+.+=... +.+
T Consensus 141 VGsvdGNRIwgKeLkg~~---l~hv~w---s~D~~~~Lf~~ange~hlydnqgnF~~K-------------------l~~ 195 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKGQL---LAHVLW---SEDLEQALFKKANGETHLYDNQGNFERK-------------------LEK 195 (1189)
T ss_pred EEeeccceecchhcchhe---ccceee---cccHHHHHhhhcCCcEEEecccccHHHh-------------------hhh
Confidence 7666543322 1122111 111211 4666777777788999999977110000 000
Q ss_pred cccccceeeeEEEeCCCCCEEEEEE--------cCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEW--------SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~--------sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
-. .......+......|-.+.| -|+...++.|...|.+.|-.-.+... + .+......|
T Consensus 196 ~c---~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-------P----vv~dtgm~~ 261 (1189)
T KOG2041|consen 196 DC---EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-------P----VVVDTGMKI 261 (1189)
T ss_pred ce---EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-------C----eEEecccEe
Confidence 00 00000011111122444444 25888999999999998876655422 1 222333567
Q ss_pred EEEEEC--CCEEEEEeCC---------CcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 312 WDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 312 ~~v~~~--~~~l~sg~~D---------g~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..+.|+ |..|+.+|.+ +.|.++..-|+.+.+++.... .|++++|-..|-.++.+ .|+.|.+=+++
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 777787 6677777644 357777778888888887766 69999998877666554 47777776664
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.3e-06 Score=94.33 Aligned_cols=284 Identities=10% Similarity=0.071 Sum_probs=163.0
Q ss_pred CCCCceEEecCCCcee------eeeE-EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEe
Q 001391 2 GKKDLSEWRLDVGQYL------GEIS-ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~------~~V~-~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~ 73 (1088)
.++.|..+|..+|+.. +.+. +.... +..++++. ++.|..+|..+|+++.+..... .+.+
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--------~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~~--- 139 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDERLSGGVGAD--------GGLVFVGTEKGEVIALDAEDGKELWRAKLSS--EVLS--- 139 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCCCcccceEEc--------CCEEEEEcCCCEEEEEECCCCcEeeeeccCc--eeec---
Confidence 4567888888887721 1221 22222 34566655 7999999999999988766422 1221
Q ss_pred cccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE-----EEEEEecccCCCC
Q 001391 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-----FDVCFLKVCNGNR 148 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I-----~~v~f~p~~~d~~ 148 (1088)
+|. ..++ .+++..+++.+..||.+++. .+-........+ .+..+ . + .
T Consensus 140 ~p~----v~~~----~v~v~~~~g~l~a~d~~tG~---------------~~W~~~~~~~~~~~~~~~sp~~-~---~-~ 191 (377)
T TIGR03300 140 PPL----VANG----LVVVRTNDGRLTALDAATGE---------------RLWTYSRVTPALTLRGSASPVI-A---D-G 191 (377)
T ss_pred CCE----EECC----EEEEECCCCeEEEEEcCCCc---------------eeeEEccCCCceeecCCCCCEE-E---C-C
Confidence 111 0232 66666778999999987543 111111111100 01111 1 3 4
Q ss_pred EEEEEEcCCcEEEEEcCCCceEEEecc--CCce-e---EEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCC
Q 001391 149 SLAIGCSDNSIRVWDISNSSIILEVHS--PERC-L---LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 149 ~lasgs~Dg~V~iWd~~~~~~~~~~~~--~~~~-~---~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
.++.+..++.+..+|..+++.+.+... +... . ...... .....+..++.++.+|.+..+|..
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~-~p~~~~~~vy~~~~~g~l~a~d~~----------- 259 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG-DPVVDGGQVYAVSYQGRVAALDLR----------- 259 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCC-ccEEECCEEEEEEcCCEEEEEECC-----------
Confidence 677788889999999999987654321 1100 0 000000 000124577778889999999987
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
+++.+..... ...... ...+..++.++.||.+..+|..+++. +-..
T Consensus 260 ----------------------tG~~~W~~~~--~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~--------~W~~ 305 (377)
T TIGR03300 260 ----------------------SGRVLWKRDA--SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSE--------LWKN 305 (377)
T ss_pred ----------------------CCcEEEeecc--CCccCc--eEeCCEEEEECCCCeEEEEECCCCcE--------EEcc
Confidence 3333332221 111111 12467788888999999999988642 1100
Q ss_pred eeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 001391 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iw 375 (1088)
...+ .....+....++.+++++.+|.++++|. +|+.+..+..+.. +++.--...++ .|+.++.||.|..+
T Consensus 306 ~~~~-~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 306 DELK-YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred cccc-CCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEEECC-EEEEEeCCceEEEe
Confidence 0111 1112222334789999999999999999 7999988876654 34332222233 48888999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00015 Score=82.50 Aligned_cols=295 Identities=11% Similarity=0.095 Sum_probs=157.7
Q ss_pred EEEEECC----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC----CCcEEEEcCC---C
Q 001391 271 LVSVSDD----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE----DCTCRVWGSD---G 337 (1088)
Q Consensus 271 l~s~s~D----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~----Dg~i~vWd~~---~ 337 (1088)
++.|+.+ +.|..|+++.... ....+. . .........++++ +.+|++..+ ++.|..|++. +
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g----~l~~~~--~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETG----TLTLVQ--T-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG 74 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTT----EEEEEE--E-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCC----CceEee--e-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc
Confidence 4455555 6888888833211 012222 1 1122334456675 678888777 5789999882 3
Q ss_pred ce--eEEEcccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcCCC-CCCcccCCccccccCCCcceEEe--eeCCCccc
Q 001391 338 KQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSI--KIPNFSEQ 411 (1088)
Q Consensus 338 ~~--~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 411 (1088)
+. +..... .+.....++++|++++|+++.. +|.|.++++... .+... ...+.. ..++.
T Consensus 75 ~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~------------~~~~~~~g~g~~~--- 138 (345)
T PF10282_consen 75 TLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV------------VQTVRHEGSGPNP--- 138 (345)
T ss_dssp EEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE------------EEEEESEEEESST---
T ss_pred eeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccccee------------eeecccCCCCCcc---
Confidence 32 233332 2334668999999999988875 899999999531 11000 000000 00110
Q ss_pred eeeccCCCCceEEEEeccCCeEEEEec--CCeEEEEEeccCCc-ceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEE
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDS-VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVA 488 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~t~--~g~i~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la 488 (1088)
.........++.++|+++++..+. .+.|+.+++..... .........+.+..-.-+.+++++ ....+
T Consensus 139 ---~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg-------~~~Yv 208 (345)
T PF10282_consen 139 ---DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG-------KYAYV 208 (345)
T ss_dssp ---TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS-------SEEEE
T ss_pred ---cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc-------CEEEE
Confidence 011234578899999997766654 34577776644331 111111222333333444454432 23445
Q ss_pred EecCCCCEEEEEEc--CCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEEC-CCCeEEEEecCCCCCcccccCCc
Q 001391 489 LGDGKGNMTIVRVV--GDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD-PKGRLKLWQLCDPFSSVCYESSK 565 (1088)
Q Consensus 489 ~g~~dg~I~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~-~dg~i~vwd~~~~~~~~~~~~~~ 565 (1088)
+.-.++.|.+|++. ++......... .............-.+++|||++|+++. ..+.|.+|+++... .
T Consensus 209 ~~e~s~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--g------ 279 (345)
T PF10282_consen 209 VNELSNTVSVFDYDPSDGSLTEIQTIS-TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--G------ 279 (345)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEE-SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--T------
T ss_pred ecCCCCcEEEEeecccCCceeEEEEee-eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--C------
Confidence 56668899999998 33221111111 1111111111233356899999988654 56789999995321 0
Q ss_pred ccceeeeeeeccccCceEEEEEeeeCCCEEEEEc-CCCcEEEEeCC
Q 001391 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD-LRGNLVLFPLL 610 (1088)
Q Consensus 566 ~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs-~dg~I~Iw~~~ 610 (1088)
.+.....+. .....-..++++|+|++|+++. .++.|.+|+++
T Consensus 280 --~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 280 --TLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp --TEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --ceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 122222222 1233467899999999999887 45689999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0003 Score=79.97 Aligned_cols=284 Identities=15% Similarity=0.168 Sum_probs=166.4
Q ss_pred CCCceEEec--CCCce--------eeeeEEEEEeccCCCCCCCCEEEEEe-----CCeEEEEECCC--Cee--EEEEeee
Q 001391 3 KKDLSEWRL--DVGQY--------LGEISALCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEA--GTL--IRPFQVF 63 (1088)
Q Consensus 3 d~~i~iWdl--~~g~~--------~~~V~~v~fs~~pd~~~~~~~laag~-----d~~I~vwd~~t--g~~--~~~~~~~ 63 (1088)
.+.|.++++ .+++. ...-+.|+++ |+ +++|.+.. .+.|..|.+.. |++ +.+...
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~--~~----~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~- 84 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS--PD----GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS- 84 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE---TT----SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEE--eC----CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-
Confidence 366888888 55551 1224578888 88 78888864 26899999875 433 333332
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeec----------cCCC
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL----------PRLS 132 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l----------~~h~ 132 (1088)
.+.....++++ |+++ .++++ +++++|.++++..... .......+ ..-.
T Consensus 85 ~g~~p~~i~~~-------~~g~---~l~vany~~g~v~v~~l~~~g~-----------l~~~~~~~~~~g~g~~~~rq~~ 143 (345)
T PF10282_consen 85 GGSSPCHIAVD-------PDGR---FLYVANYGGGSVSVFPLDDDGS-----------LGEVVQTVRHEGSGPNPDRQEG 143 (345)
T ss_dssp SSSCEEEEEEC-------TTSS---EEEEEETTTTEEEEEEECTTSE-----------EEEEEEEEESEEEESSTTTTSS
T ss_pred CCCCcEEEEEe-------cCCC---EEEEEEccCCeEEEEEccCCcc-----------cceeeeecccCCCCCccccccc
Confidence 34456778888 7773 44444 4699999999986420 01111111 1223
Q ss_pred CcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCCc--e--EEEeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSS--I--ILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEII 206 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~~--~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~ 206 (1088)
...+++.|+| ++++|++.. ....|.+|++.... . ...+..+..+.-..+.| ++++.+++. ...+++|.
T Consensus 144 ~h~H~v~~~p---dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f---~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 144 PHPHQVVFSP---DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF---SPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TCEEEEEE-T---TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE----TTSSEEEEEETTTTEEE
T ss_pred ccceeEEECC---CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE---cCCcCEEEEecCCCCcEE
Confidence 5678999999 999877753 34579999997654 3 23334444444555665 467776655 45678899
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe----C--CCCCEEEEEEcCCCCEEEEEE-CCCc
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----G--HEGSIFRIEWSSCGSKLVSVS-DDRS 279 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----g--h~~~V~~v~~sp~g~~l~s~s-~Dg~ 279 (1088)
++++.... + ....+.... + .......|+++|||++|.++. ...+
T Consensus 218 v~~~~~~~--------------------g---------~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 218 VFDYDPSD--------------------G---------SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp EEEEETTT--------------------T---------EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred EEeecccC--------------------C---------ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 99887111 0 111222221 1 123688999999999876654 5678
Q ss_pred EEEEEcCCC-cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-CCCcEEEEcC---CCceeEEEcccCCCCeE
Q 001391 280 ARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 280 v~iWd~~~~-~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~---~~~~~~~~~~h~~~~V~ 352 (1088)
|.+|++... .. .+.+. .........+.++++ +++|+++. .++.|.+|++ +|.+...-.........
T Consensus 269 I~vf~~d~~~g~-----l~~~~--~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 269 ISVFDLDPATGT-----LTLVQ--TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EEEEEECTTTTT-----EEEEE--EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EEEEEEecCCCc-----eEEEE--EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 999999432 11 23443 222233447888886 67777666 5678999987 34433332222222355
Q ss_pred EEEE
Q 001391 353 RCLY 356 (1088)
Q Consensus 353 ~l~~ 356 (1088)
||.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=115.88 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=137.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
...|.++.-+ |. ..+-++|+ ||.|++|.+..++.+..++.....+|..+.|+ ..|+ ..-++-|
T Consensus 2208 v~~v~r~~sH--p~----~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~-------~qGn---k~~i~d~ 2271 (2439)
T KOG1064|consen 2208 VENVRRMTSH--PS----DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN-------HQGN---KFGIVDG 2271 (2439)
T ss_pred cCceeeecCC--CC----CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc-------ccCC---ceeeecc
Confidence 3446666666 65 66777776 79999999999999888886555689999998 6663 5566677
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE---cCCcEEEEEcCCC---ce
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNS---SI 169 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs---~Dg~V~iWd~~~~---~~ 169 (1088)
||.+.+|.... +.....+.|...-.+.+|.. ..+++++ .++.+.+||..-. ..
T Consensus 2272 dg~l~l~q~~p----------------k~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2272 DGDLSLWQASP----------------KPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred CCceeecccCC----------------cceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccce
Confidence 99999999872 45566678888888898853 6677765 4778999997432 22
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
+. .+|... ...+++ -|...++++|+.+|.|++||++ ..+.+
T Consensus 2331 v~--~~H~~g-aT~l~~---~P~~qllisggr~G~v~l~D~r---------------------------------qrql~ 2371 (2439)
T KOG1064|consen 2331 VH--TCHDGG-ATVLAY---APKHQLLISGGRKGEVCLFDIR---------------------------------QRQLR 2371 (2439)
T ss_pred ee--eecCCC-ceEEEE---cCcceEEEecCCcCcEEEeehH---------------------------------HHHHH
Confidence 33 223221 223333 4788999999999999999998 44455
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
+.++. +. ...++++++..|.++||++.....
T Consensus 2372 h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2372 HTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred HHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence 44443 34 567899999999999999988543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-05 Score=86.20 Aligned_cols=275 Identities=11% Similarity=0.144 Sum_probs=161.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE----
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL---- 93 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~---- 93 (1088)
.+....++| ++ |+++|.+.+..++|++..++..+.+... . ++..+.||| -+ ..|.+
T Consensus 35 ~~~~v~~~S--~~----G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP-------~g----~yL~T~e~~ 94 (566)
T KOG2315|consen 35 RPCNVFAYS--NN----GRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFSP-------KG----NYLLTWEPW 94 (566)
T ss_pred CcceeEEEc--CC----CcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeecc-------cc----ccccccccc
Confidence 345667788 77 8999999999999999999865444443 2 689999995 43 33333
Q ss_pred --ECC-----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 94 --FGE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 94 --~gd-----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.++ ..+.+|++++.. ....-..+-..+ |+..|++ |..+ +.--..+.+.+|+..+
T Consensus 95 ~i~~~~~~~~pn~~v~~vet~~-------------~~s~~q~k~Q~~--W~~qfs~---dEsl-~arlv~nev~f~~~~~ 155 (566)
T KOG2315|consen 95 AIYGPKNASNPNVLVYNVETGV-------------QRSQIQKKMQNG--WVPQFSI---DESL-AARLVSNEVQFYDLGS 155 (566)
T ss_pred ccccCCCCCCCceeeeeeccce-------------ehhheehhhhcC--ccccccc---chhh-hhhhhcceEEEEecCC
Confidence 333 346799988621 111111112223 5888987 5543 2233356799999987
Q ss_pred CceEE-EeccCCceeEEEEeeecCCCCCcEEEE-----EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEec
Q 001391 167 SSIIL-EVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1088)
Q Consensus 167 ~~~~~-~~~~~~~~~~~s~~~~~~s~~~~~l~s-----g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 240 (1088)
.+.+. .++. .+...+.+. ..|....||+ ++.-+.++||.+.......
T Consensus 156 f~~~~~kl~~-~~i~~f~lS---pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~----------------------- 208 (566)
T KOG2315|consen 156 FKTIQHKLSV-SGITMLSLS---PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ----------------------- 208 (566)
T ss_pred ccceeeeeec-cceeeEEec---CCCCCceEEEEccCCCCCCcEEEEeccccccccc-----------------------
Confidence 54432 2321 121122221 1223344444 4566778888875111100
Q ss_pred ccccceeeeEEEeCCCCCEEEEEEcCCCCEE---EEEEC---------CCcEEEEEcCCCcccCCCCceeeeceeeeccC
Q 001391 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL---VSVSD---------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1088)
Q Consensus 241 ~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l---~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~ 308 (1088)
....+.| ....=..+.|++-|.-| ++... ..++++.++..... . .-....
T Consensus 209 -----~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--------~---V~L~k~ 270 (566)
T KOG2315|consen 209 -----PVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--------S---VPLLKE 270 (566)
T ss_pred -----hhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE--------E---EecCCC
Confidence 0000001 01112234555555421 22222 34677777663221 1 223346
Q ss_pred cceEEEEEC--CC--EEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC---CCEEEEEcCC
Q 001391 309 ARVWDCCLT--DS--FIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD---SAIKVHQFQA 379 (1088)
Q Consensus 309 ~~I~~v~~~--~~--~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D---g~I~iwd~~~ 379 (1088)
++|.++.|+ +. -++-|-.=.++.|+|+.++++..+.. + +=.++-|+|.|++|+.+|.+ |.+-+||...
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--g-pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--G-PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--C-CccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 899999998 32 34455667889999999999888743 3 44688999999999998865 7999999843
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.3e-06 Score=97.52 Aligned_cols=190 Identities=15% Similarity=0.093 Sum_probs=120.0
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcC---CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEec
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (1088)
+.+..+...+.+.+|+| ||++|+.+..+ ..|++||+.+++........ ....+..+ ++++..|+ +.+.
T Consensus 183 ~~l~~~~~~~~~p~~Sp---dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~--~~~~~~~~---spDg~~l~~~~~~ 254 (417)
T TIGR02800 183 QTITRSREPILSPAWSP---DGQKLAYVSFESGKPEIYVQDLATGQREKVASFP--GMNGAPAF---SPDGSKLAVSLSK 254 (417)
T ss_pred EEeecCCCceecccCCC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC--CCccceEE---CCCCCEEEEEECC
Confidence 33445667789999999 99998877643 47999999887654332211 12233444 67887665 4444
Q ss_pred CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-C
Q 001391 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R 278 (1088)
Q Consensus 202 dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D-g 278 (1088)
++ .|.+|++. ++ ....+..+........|+|+|++|+.++.. +
T Consensus 255 ~~~~~i~~~d~~---------------------------------~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 255 DGNPDIYVMDLD---------------------------------GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred CCCccEEEEECC---------------------------------CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 44 47777876 22 123334444455567899999988776653 3
Q ss_pred --cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcccCCCCe
Q 001391 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 279 --~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~h~~~~V 351 (1088)
.|.++|+.+++. + .+..+...+....|+ +.+++..+.++ .|.+||+.+.....+.... ..
T Consensus 301 ~~~iy~~d~~~~~~------~-----~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~ 367 (417)
T TIGR02800 301 SPQIYMMDADGGEV------R-----RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LD 367 (417)
T ss_pred CceEEEEECCCCCE------E-----EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CC
Confidence 577777765422 1 233344456677787 56777777665 7888888544444444332 24
Q ss_pred EEEEEcCCCCEEEEEeCCC
Q 001391 352 WRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg 370 (1088)
....|+|+++.|+..+.++
T Consensus 368 ~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCceECCCCCEEEEEEeCC
Confidence 4568999999888777654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-06 Score=95.56 Aligned_cols=143 Identities=14% Similarity=0.163 Sum_probs=112.0
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
|-..++-|...|.|.+|++..++....+. ......+..+.. ..+-.+|.+++.|+.+..|+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~---~~~~~ciyS~~ad~~v~~~~~~------------- 132 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILD---AQRLGCIYSVGADLKVVYILEK------------- 132 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeec---ccccCceEecCCceeEEEEecc-------------
Confidence 44577888899999999999999888776 222222333221 3455689999999999999998
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
....++..++....+.+++.+||++.+++++. +|++||++++ +.+. .+
T Consensus 133 --------------------~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~k--------evv~--~f 180 (541)
T KOG4547|consen 133 --------------------EKVIIRIWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETK--------EVVI--TF 180 (541)
T ss_pred --------------------cceeeeeeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCc--------eEEE--Ee
Confidence 67788888888999999999999999999875 8999999995 4454 89
Q ss_pred eccCcceEEEEEC-------CCEE-EEEeCCCcEEEEcCC
Q 001391 305 YGHNARVWDCCLT-------DSFI-ITAGEDCTCRVWGSD 336 (1088)
Q Consensus 305 ~~h~~~I~~v~~~-------~~~l-~sg~~Dg~i~vWd~~ 336 (1088)
.||.++|.++.|. +.++ .+...+.-+.+|-..
T Consensus 181 tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 181 TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999999985 3444 445566678888773
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-07 Score=97.10 Aligned_cols=162 Identities=18% Similarity=0.212 Sum_probs=108.2
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce----EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~----~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
...+..+| .+++||++..+....++++..... +.....+.+.. ++.+...+......-..+....+.+|..
T Consensus 65 ~~~~~~s~---~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~--ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSD---SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT--AISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCC---CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc--eeeeeeccceEEEEeecCCceeeeeecc
Confidence 34455566 888999998888877777654332 22222232221 2222222222222222333444445544
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
. . .....+-||-..+..|+++||+++++++..|..||+-.....
T Consensus 140 ~---------------------------------~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-- 183 (390)
T KOG3914|consen 140 D---------------------------------S-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-- 183 (390)
T ss_pred c---------------------------------c-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--
Confidence 3 2 233345699999999999999999999999999999877652
Q ss_pred cCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
-.+.. -..||...|..++.. +..|+++|.|+++++||+ +|+.+.++.
T Consensus 184 ------f~Ies-fclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 184 ------FVIES-FCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ------cchhh-hccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 23332 567999999999998 567899999999999999 888886654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-05 Score=94.48 Aligned_cols=222 Identities=12% Similarity=0.061 Sum_probs=129.7
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC----CCEEEEEEeccCCCCCCCCCCccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g----d~~v~iw~l~~~~~~~~~~~~~~~ 119 (1088)
..|.++|...+. ...+..+.. .+...+|+ ||| ..++... ...|.+|++....
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~-~~~~p~~S-------pdg----~~la~~~~~~~~~~i~v~d~~~g~----------- 225 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSRE-PILSPAWS-------PDG----QKLAYVSFESGKPEIYVQDLATGQ----------- 225 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCC-ceecccCC-------CCC----CEEEEEEcCCCCcEEEEEECCCCC-----------
Confidence 468899975443 344444333 58888899 888 3444322 2579999987532
Q ss_pred cccceeeeccCCCCcEEEEEEecccCCCCEEEE-EEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 120 ~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las-gs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
.+. +..+...+.+++|+| |++.|+. .+.++ .|.+||+.++..... ..+.. ......+ ++++..|
T Consensus 226 --~~~---~~~~~~~~~~~~~sp---Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~-~~~~~~~---s~dg~~l 292 (417)
T TIGR02800 226 --REK---VASFPGMNGAPAFSP---DGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TNGPG-IDTEPSW---SPDGKSI 292 (417)
T ss_pred --EEE---eecCCCCccceEECC---CCCEEEEEECCCCCccEEEEECCCCCEEEC-CCCCC-CCCCEEE---CCCCCEE
Confidence 222 223445667799999 9987654 44444 588899887754332 22211 1112233 5678777
Q ss_pred EEEec-CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE
Q 001391 197 ASGTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1088)
Q Consensus 197 ~sg~~-dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s 273 (1088)
+..+. .+ .|.++++. .+. ...+..+...+....|+|+|++++.
T Consensus 293 ~~~s~~~g~~~iy~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDAD---------------------------------GGE-VRRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred EEEECCCCCceEEEEECC---------------------------------CCC-EEEeecCCCCccCeEECCCCCEEEE
Confidence 65543 34 46666655 222 2334445566778899999999998
Q ss_pred EECCC---cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcc
Q 001391 274 VSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKE 345 (1088)
Q Consensus 274 ~s~Dg---~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~ 345 (1088)
++.++ .|.+||+.++.. +.+ ... .......|+ +..|+..+.++ .+.+.+.+++....+..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~------~~l-----~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE------RVL-----TDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred EEccCCceEEEEEeCCCCCe------EEc-----cCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 88776 788888877432 111 111 112334566 56666665543 35555556666665554
Q ss_pred cCC
Q 001391 346 HIG 348 (1088)
Q Consensus 346 h~~ 348 (1088)
+.+
T Consensus 407 ~~g 409 (417)
T TIGR02800 407 GNG 409 (417)
T ss_pred CCC
Confidence 433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-06 Score=94.94 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=141.5
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccC------CceeEEEEee-------------ecCCCCCcEEEEEecCCeEE
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSP------ERCLLYSMKL-------------WGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~------~~~~~~s~~~-------------~~~s~~~~~l~sg~~dg~I~ 206 (1088)
...++|....||.+|+|+...++....+... ..+..|.+.. ..-+.+...++-|+..|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 5678999999999999999988876665421 1222232211 00123456788899999999
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+++.. .++.-..+. +|.+.|.++.++.+-..|.|++.|..+..|+
T Consensus 84 ~ys~~---------------------------------~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 84 LYSVA---------------------------------GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL 130 (541)
T ss_pred EEEec---------------------------------CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEe
Confidence 99998 555555554 7999999999999999999999999999999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC--
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-- 359 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d-- 359 (1088)
....+ .+. ...+-+..+.++++++ ..+++|+ +.|++||+ +++.+.+|.+|.+ +|.++.|-.+
T Consensus 131 ~~~~~--------~~~--~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 131 EKEKV--------IIR--IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLID 197 (541)
T ss_pred cccce--------eee--eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEecc
Confidence 98853 333 5666677788999985 4777665 68999999 7888999999999 8999999765
Q ss_pred ---CCE-EEEEeCCCCEEEEEcCC
Q 001391 360 ---SSL-LVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 360 ---g~~-l~tg~~Dg~I~iwd~~~ 379 (1088)
|.+ |.+...+.-+.+|-...
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccceeeeccccccceeEEEEEc
Confidence 454 44555667788887743
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=90.14 Aligned_cols=236 Identities=15% Similarity=0.189 Sum_probs=141.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-----eEEEEeeeC-----------CcceEEEEeccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINC 78 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-----~~~~~~~~~-----------~~~V~~i~~s~~~~ 78 (1088)
...-|++|.|. .. |.||++|. +|.|.+|.-.... -...|+.|+ ..+|..|.|.
T Consensus 25 ead~ItaVefd--~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~---- 94 (460)
T COG5170 25 EADKITAVEFD--ET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF---- 94 (460)
T ss_pred ccceeeEEEec--cc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee----
Confidence 34569999999 66 89999999 7999999865432 122344443 1457778876
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCC--------C---CCC-----CC------c----ccc-ccceeeec-cC
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSP--------N---SQY-----QP------E----TCV-NLSLVQSL-PR 130 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~--------~---~~~-----~~------~----~~~-~~~~~~~l-~~ 130 (1088)
.+++ +...|++..|++|++|.+...... . .+. ++ . ..+ ..++-+.+ ..
T Consensus 95 ---~~t~-r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 95 ---DDTG-RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred ---cCCC-cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 2221 236677778999999998744200 0 000 00 0 000 11112222 56
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---EEEeccCC----ceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~---~~~~~~~~----~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
|.-.|.++.|+. |.+.++++ .|-.|.+|+++--.. +.-++.+. ..++.+..|++. ....+.-.+..|
T Consensus 171 H~yhiNSiS~Ns---D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG 244 (460)
T COG5170 171 HPYHINSISFNS---DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKG 244 (460)
T ss_pred ceeEeeeeeecC---chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh--HcceEEEecCCC
Confidence 888899999988 88888776 478899999864332 22222222 234556666432 344566677889
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
+|++-|++...+-.. .-.++.....+...--+.+-...|..+.|+++|+++++-+. -+|+||
T Consensus 245 ~Ikl~DlRq~alcdn-----------------~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiw 306 (460)
T COG5170 245 EIKLNDLRQSALCDN-----------------SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIW 306 (460)
T ss_pred cEEehhhhhhhhccC-----------------chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEE
Confidence 999999982221110 00000000011111223344567889999999999988755 589999
Q ss_pred EcCCCc
Q 001391 284 EVRAEY 289 (1088)
Q Consensus 284 d~~~~~ 289 (1088)
|++..+
T Consensus 307 Dvnm~k 312 (460)
T COG5170 307 DVNMAK 312 (460)
T ss_pred eccccc
Confidence 998764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00034 Score=74.72 Aligned_cols=277 Identities=11% Similarity=0.130 Sum_probs=163.5
Q ss_pred eEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc---CCcEEEE
Q 001391 89 FEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVW 162 (1088)
Q Consensus 89 ~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~---Dg~V~iW 162 (1088)
.++.+.. ++-|.+|++.+.. + .... ..+..+.+.++-++|+| ++++|.++-. +|.|--|
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~--g---------~l~~-~~~v~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay 69 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKT--G---------ELSL-LQLVAELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAY 69 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcc--c---------ccch-hhhccccCCCceEEECC---CCCEEEEEEecCCcCcEEEE
Confidence 3444544 6789999998543 1 0111 12234667789999999 9999988754 5777777
Q ss_pred EcCC--CceEEE--eccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 163 DISN--SSIILE--VHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 163 d~~~--~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
.++. |+.... ...+..... .+++ ++++.+|+++. ..|.|.++.++....
T Consensus 70 ~iD~~~G~Lt~ln~~~~~g~~p~-yvsv---d~~g~~vf~AnY~~g~v~v~p~~~dG~---------------------- 123 (346)
T COG2706 70 RIDPDDGRLTFLNRQTLPGSPPC-YVSV---DEDGRFVFVANYHSGSVSVYPLQADGS---------------------- 123 (346)
T ss_pred EEcCCCCeEEEeeccccCCCCCe-EEEE---CCCCCEEEEEEccCceEEEEEcccCCc----------------------
Confidence 7764 544322 111111112 2222 67888877765 458899999872110
Q ss_pred EecccccceeeeEEEeCCCCC----------EEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 238 KLQDQQHTAVNLFRLVGHEGS----------IFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~gh~~~----------V~~v~~sp~g~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
......+..|.+. +....+.|++++|+++. .| .|.+|++..++. ....+ ...
T Consensus 124 --------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L------~~~~~-~~v 187 (346)
T COG2706 124 --------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKL------TPADP-AEV 187 (346)
T ss_pred --------cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcc------ccccc-ccc
Confidence 0111111223333 78899999999998874 35 699999997654 22221 222
Q ss_pred ccCcceEEEEEC--CCEEEE-EeCCCcEEEEcCCC--ceeEEEccc-------CC-CCeEEEEEcCCCCEEEEEeC-CCC
Q 001391 306 GHNARVWDCCLT--DSFIIT-AGEDCTCRVWGSDG--KQLKMIKEH-------IG-RGIWRCLYDSLSSLLVTAGF-DSA 371 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~s-g~~Dg~i~vWd~~~--~~~~~~~~h-------~~-~~V~~l~~~~dg~~l~tg~~-Dg~ 371 (1088)
........+.|+ +.+.+. .--+++|-+|..++ ..+..++.+ .+ ...-.|.+++||++|.++.+ ...
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds 267 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS 267 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence 445567889998 344444 44689999999943 333333221 11 24667889999999988764 346
Q ss_pred EEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCC--eEEEEEe
Q 001391 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG--YLYHTKL 447 (1088)
Q Consensus 372 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g--~i~~~~~ 447 (1088)
|.++.+... .. .+.+ ...+..+....|.+.+++.+++|++.++. .+..+.+
T Consensus 268 I~~f~V~~~----------------~g-~L~~--------~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 268 IAVFSVDPD----------------GG-KLEL--------VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEEEcCC----------------CC-EEEE--------EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 777766321 00 0110 11112223347899999999877776443 2544443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00023 Score=77.70 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=139.3
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE-EecccCCCCEEEEEEcCCcEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC-FLKVCNGNRSLAIGCSDNSIR 160 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~-f~p~~~d~~~lasgs~Dg~V~ 160 (1088)
.|| ..++....|.|.++|.+++....-... .....-......-....-+. |++ .+|.+++..+ -|...
T Consensus 276 sDG----krIvFq~~GdIylydP~td~lekldI~----lpl~rk~k~~k~~~pskyledfa~--~~Gd~ia~VS-RGkaF 344 (668)
T COG4946 276 SDG----KRIVFQNAGDIYLYDPETDSLEKLDIG----LPLDRKKKQPKFVNPSKYLEDFAV--VNGDYIALVS-RGKAF 344 (668)
T ss_pred CCC----cEEEEecCCcEEEeCCCcCcceeeecC----CccccccccccccCHHHhhhhhcc--CCCcEEEEEe-cCcEE
Confidence 677 688888889999999886542111000 00000000111111111122 344 2678888876 46677
Q ss_pred EEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC-eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 161 iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg-~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
|.+...+-.++. ..+.+ +-|. ....+..-++.|+.|| .+-|+|..
T Consensus 345 i~~~~~~~~iqv-~~~~~-VrY~----r~~~~~e~~vigt~dgD~l~iyd~~---------------------------- 390 (668)
T COG4946 345 IMRPWDGYSIQV-GKKGG-VRYR----RIQVDPEGDVIGTNDGDKLGIYDKD---------------------------- 390 (668)
T ss_pred EECCCCCeeEEc-CCCCc-eEEE----EEccCCcceEEeccCCceEEEEecC----------------------------
Confidence 766655543332 11111 2222 1234556788899999 89999987
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
+..+.++.+.-+.|.++..+|+|++++.+.+...+.+.|+.++.. +.+ -....+-|+...|+
T Consensus 391 ------~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv------~~i----dkS~~~lItdf~~~~n 454 (668)
T COG4946 391 ------GGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV------RLI----DKSEYGLITDFDWHPN 454 (668)
T ss_pred ------CceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe------eEe----cccccceeEEEEEcCC
Confidence 334566777789999999999999999999989999999999754 222 23344568888888
Q ss_pred CCEEEEEeCCC----cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 318 DSFIITAGEDC----TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 318 ~~~l~sg~~Dg----~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
...++-+--+| .|+++|+.+..+.......+ .=.+-+|.||+++|.--+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 35666555444 68999996654444433333 235778999999876554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.2e-07 Score=111.56 Aligned_cols=189 Identities=13% Similarity=0.167 Sum_probs=135.2
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
+-..|.++.=+| ...+-+||+.||.|++|....++.+........+.+..+.| +.+|+.+..+..||.+.+|..
T Consensus 2207 ~v~~v~r~~sHp---~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f---~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP---SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF---NHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ccCceeeecCCC---CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh---cccCCceeeeccCCceeeccc
Confidence 346677888788 77788899999999999999888877766443344444444 567889999999999999998
Q ss_pred ccCccccC-------CC---CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 211 DWEHVAPL-------LN---SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 211 ~~~~~~~~-------~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.-....+. .+ -.......|...+++++.+|+.-.....-..-..|.+.++++++.|..+.++||+.+|.|
T Consensus 2281 ~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred CCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence 72111100 00 112233445556889999998654443333338999999999999999999999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
++||++..+. + |.-.. +. ...++++|+..|.++||++ .-..+.++
T Consensus 2361 ~l~D~rqrql--------~-------h~~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2361 CLFDIRQRQL--------R-------HTFQA--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEeehHHHHH--------H-------HHhhh--hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 9999988533 1 11111 11 3578999999999999999 44455554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-05 Score=85.75 Aligned_cols=282 Identities=15% Similarity=0.199 Sum_probs=169.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe------------CCeEEEEECCCCeeEEEEeeeCCcc-eE-EEEecccccccCCCc
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS------------GSQVLLYDLEAGTLIRPFQVFHGIR-LH-GISCNFINCTEGSVS 84 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~------------d~~I~vwd~~tg~~~~~~~~~~~~~-V~-~i~~s~~~~~~~~d~ 84 (1088)
.|.-+.|| |. -+||++=+ +..|+|||+.||.+.+.|..+.+.. ++ -..|| .|+
T Consensus 251 ~Vq~idfS--P~----EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-------~Dd 317 (698)
T KOG2314|consen 251 GVQFIDFS--PN----EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-------HDD 317 (698)
T ss_pred CceeeecC--Cc----cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-------cCC
Confidence 37789999 99 89999822 2589999999999999998854322 22 34566 675
Q ss_pred cceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-----CCcE
Q 001391 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSI 159 (1088)
Q Consensus 85 ~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-----Dg~V 159 (1088)
.++|.-..++|.||+... +.++-.-.---..|....|+| .+++||-=.. -..+
T Consensus 318 ----Ky~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~FswsP---~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 318 ----KYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWSP---TSNLLAYWTPETNNIPARV 375 (698)
T ss_pred ----ceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccCC---CcceEEEEcccccCCcceE
Confidence 788888889999998663 111111111225688888999 7776654221 2235
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE----------ecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG----------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg----------~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
.+-.+.+++.+.+..... +..+.+++. .+|.+|+.- +....+-|+.++
T Consensus 376 tL~evPs~~~iRt~nlfn---VsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrir------------------ 433 (698)
T KOG2314|consen 376 TLMEVPSKREIRTKNLFN---VSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR------------------ 433 (698)
T ss_pred EEEecCccceeeecccee---eeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEee------------------
Confidence 555555555544432111 112333333 345555432 112223333333
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
...-++... .-...|...+|-|.|..+++-+. ..++.+|.+.+... ....+. .+.
T Consensus 434 --------------eKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~----~~~lVk--~~d- 491 (698)
T KOG2314|consen 434 --------------EKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK----KPSLVK--ELD- 491 (698)
T ss_pred --------------ccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC----chhhhh--hhc-
Confidence 122222222 24577899999999988766443 35788888874211 022222 111
Q ss_pred cCcceEEEEEC--CCEEEEE---eCCCcEEEEcCCC-cee-EEEcccCCCCeEEEEEcCCCCEEEEEeC------CCCEE
Q 001391 307 HNARVWDCCLT--DSFIITA---GEDCTCRVWGSDG-KQL-KMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIK 373 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg---~~Dg~i~vWd~~~-~~~-~~~~~h~~~~V~~l~~~~dg~~l~tg~~------Dg~I~ 373 (1088)
......+.|+ |.+++.+ |..|.+..+|.+. ... .....|.. .+.+.|.|.|+|++|++. |...+
T Consensus 492 -k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~--at~veWDPtGRYvvT~ss~wrhk~d~GYr 568 (698)
T KOG2314|consen 492 -KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA--ATEVEWDPTGRYVVTSSSSWRHKVDNGYR 568 (698)
T ss_pred -ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc--cccceECCCCCEEEEeeehhhhccccceE
Confidence 1345677787 5666554 4678999999853 222 12234543 678999999999999874 66788
Q ss_pred EEEcCCCCC
Q 001391 374 VHQFQAFLP 382 (1088)
Q Consensus 374 iwd~~~~~~ 382 (1088)
+|++++..+
T Consensus 569 i~tfqGrll 577 (698)
T KOG2314|consen 569 IFTFQGRLL 577 (698)
T ss_pred EEEeecHHH
Confidence 999877544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-05 Score=83.58 Aligned_cols=272 Identities=13% Similarity=0.115 Sum_probs=168.6
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
.-++..+++| |. |++|++..-..|.+|+-..+..+..+.. . .|.-+.|| |.+ .+|+++.+
T Consensus 32 ~~p~~~~~~S--P~----G~~l~~~~~~~V~~~~g~~~~~l~~~~~--~-~V~~~~fS-------P~~----kYL~tw~~ 91 (561)
T COG5354 32 NWPVAYVSES--PL----GTYLFSEHAAGVECWGGPSKAKLVRFRH--P-DVKYLDFS-------PNE----KYLVTWSR 91 (561)
T ss_pred Ccchhheeec--Cc----chheehhhccceEEccccchhheeeeec--C-CceecccC-------ccc----ceeeeecc
Confidence 3468899999 98 9999998888899999888776666663 2 48999999 666 67777763
Q ss_pred C----------------EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc--EE-EEEEecccCCCCEEEEEEcCC
Q 001391 97 K----------------RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW--VF-DVCFLKVCNGNRSLAIGCSDN 157 (1088)
Q Consensus 97 ~----------------~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~--I~-~v~f~p~~~d~~~lasgs~Dg 157 (1088)
. .+.+||+.. ...+..+.+-... .+ -+.|+- +..++|=- ...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~s---------------g~iv~sf~~~~q~~~~Wp~~k~s~---~D~y~ARv-v~~ 152 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIAS---------------GMIVFSFNGISQPYLGWPVLKFSI---DDKYVARV-VGS 152 (561)
T ss_pred CCccChhhccCCccccCceeEEeccC---------------ceeEeeccccCCcccccceeeeee---cchhhhhh-ccC
Confidence 2 467888775 3455666555544 55 677877 66655433 245
Q ss_pred cEEEEEcCCCceE----EEeccCCceeEEEEeeecCCCCCcEEEE-----EecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 158 SIRVWDISNSSII----LEVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 158 ~V~iWd~~~~~~~----~~~~~~~~~~~~s~~~~~~s~~~~~l~s-----g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
.+.|+++ ++... ..+. +.+-.-++ +.+. .++..||. ++..+++++|.+.
T Consensus 153 sl~i~e~-t~n~~~~p~~~lr-~~gi~dFs--isP~-~n~~~la~~tPEk~~kpa~~~i~sIp----------------- 210 (561)
T COG5354 153 SLYIHEI-TDNIEEHPFKNLR-PVGILDFS--ISPE-GNHDELAYWTPEKLNKPAMVRILSIP----------------- 210 (561)
T ss_pred eEEEEec-CCccccCchhhcc-ccceeeEE--ecCC-CCCceEEEEccccCCCCcEEEEEEcc-----------------
Confidence 6999996 33221 1111 11111122 1111 12222332 3455666666665
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-----------CCCcEEEEEcCCCcccCCCCce
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-----------DDRSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-----------~Dg~v~iWd~~~~~~~~~~~~~ 297 (1088)
.+..+..-.--+-.=..+.|.+.|++++.-- ....+.|+++.....
T Consensus 211 ----------------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i------- 267 (561)
T COG5354 211 ----------------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI------- 267 (561)
T ss_pred ----------------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-------
Confidence 2222222111122235677888888765321 124567777765322
Q ss_pred eeeceeeeccCcceEEEEEC--CC--EEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC---C
Q 001391 298 EVGSSVLYGHNARVWDCCLT--DS--FIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD---S 370 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~--~~--~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D---g 370 (1088)
. ...+-.++|...+|. .+ -+++|-.+.++.++|+.++....+.... =..+.|+|.+++++.+|.| |
T Consensus 268 --~--V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~---rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 268 --P--VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK---RNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred --c--eeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc---cccccccCcccEEEEecCCcccc
Confidence 1 222567889999996 22 3566678999999999888555544332 3467899999999998876 6
Q ss_pred CEEEEEcCC
Q 001391 371 AIKVHQFQA 379 (1088)
Q Consensus 371 ~I~iwd~~~ 379 (1088)
.|-+|+..+
T Consensus 341 ni~i~~~~~ 349 (561)
T COG5354 341 NIEIFDPAG 349 (561)
T ss_pred ceEEeccCC
Confidence 788888754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0039 Score=68.42 Aligned_cols=231 Identities=12% Similarity=0.035 Sum_probs=134.2
Q ss_pred EEeCCCcEEEEc--CCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcce
Q 001391 323 TAGEDCTCRVWG--SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1088)
Q Consensus 323 sg~~Dg~i~vWd--~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1088)
....||.=.+|. ++|+-++.....+. -.+-..+.||+.++- +.-|.|.++|..+..+..++-.
T Consensus 241 lsD~eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~------------ 305 (668)
T COG4946 241 LSDHEGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIG------------ 305 (668)
T ss_pred EecccCccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecC------------
Confidence 344555444444 46766554433332 233345678887665 4567899999976544433211
Q ss_pred EEeeeCCCc-cceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCC
Q 001391 401 FSIKIPNFS-EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479 (1088)
Q Consensus 401 ~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 479 (1088)
.|-.. ......-.........+.. +|.+++..+.|+.+..+.|.... .+..+...+.-..+.
T Consensus 306 ----lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGkaFi~~~~~~~~------iqv~~~~~VrY~r~~------ 368 (668)
T COG4946 306 ----LPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGKAFIMRPWDGYS------IQVGKKGGVRYRRIQ------ 368 (668)
T ss_pred ----CccccccccccccCHHHhhhhhccC-CCcEEEEEecCcEEEECCCCCee------EEcCCCCceEEEEEc------
Confidence 11110 0000000000111112222 56788888888888766666533 222222223333332
Q ss_pred cCCCCCeEEEecCCC-CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 480 PCGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 480 s~~~~~~la~g~~dg-~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
.+.+-++.|..|| .+-+|+..++.... ....-+++.. ...+++|++++.+.....+.+.|++++..
T Consensus 369 --~~~e~~vigt~dgD~l~iyd~~~~e~kr--------~e~~lg~I~a--v~vs~dGK~~vvaNdr~el~vididngnv- 435 (668)
T COG4946 369 --VDPEGDVIGTNDGDKLGIYDKDGGEVKR--------IEKDLGNIEA--VKVSPDGKKVVVANDRFELWVIDIDNGNV- 435 (668)
T ss_pred --cCCcceEEeccCCceEEEEecCCceEEE--------eeCCccceEE--EEEcCCCcEEEEEcCceEEEEEEecCCCe-
Confidence 2335788999999 89999998765321 1112222332 45789999999999999999999986631
Q ss_pred ccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCC----cEEEEeCCcc
Q 001391 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRG----NLVLFPLLRD 612 (1088)
Q Consensus 559 ~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg----~I~Iw~~~~~ 612 (1088)
.+. .....+-|+.++|+|++++||-|--+| .|++||+..+
T Consensus 436 -----------~~i---dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 436 -----------RLI---DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred -----------eEe---cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 111 123356699999999999999988877 5889998764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-07 Score=104.22 Aligned_cols=227 Identities=15% Similarity=0.192 Sum_probs=150.7
Q ss_pred ceEEecCCCc----------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-eeEEEEeeeCCcceEEEEe
Q 001391 6 LSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 6 i~iWdl~~g~----------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~ 73 (1088)
..+|++.... |...|+.+.|. |. ....|++++ |..+..||+.+. ..+..+..-+. +...++|
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~--~q---~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkw 166 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFN--PQ---HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKW 166 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccC--CC---CCcceeeccccccceeeeccCCCcceeeeecccc-cCceeee
Confidence 4567766543 56678899998 64 235677777 899999999876 34555544333 5678888
Q ss_pred cccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
+- .++ ..+|.+-.+.|++||+..+. ..+..+++|...|+.++|+.. .-..+.+.
T Consensus 167 ny------k~p----~vlasshg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~--~~s~~~s~ 220 (1081)
T KOG0309|consen 167 NY------KDP----NVLASSHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRF--KYSEIMSS 220 (1081)
T ss_pred cc------cCc----chhhhccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhh--hhhhhccc
Confidence 73 454 68888889999999998654 677888899999999999762 33468899
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
+.|++|+.||.+....-..........++-.++.++. +|.++.---.++.+.+.+.+..
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n~-------------------- 279 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCENS-------------------- 279 (1081)
T ss_pred CCCCceeeecccccccccceeccccCcceeccccccC-ceeEeccccCCeeeeeccccch--------------------
Confidence 9999999999875433322222333344544444432 2322221111224445544410
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC----------EEEEEECCCcEEEEEcCCC
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS----------KLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~----------~l~s~s~Dg~v~iWd~~~~ 288 (1088)
...|......+++++|.||.+.|....|-..+. .|+|=|.|.++|+|-+.+.
T Consensus 280 ---d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 280 ---DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ---hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 011222225678999999999998877643221 5899999999999998763
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00053 Score=73.30 Aligned_cols=264 Identities=16% Similarity=0.141 Sum_probs=159.4
Q ss_pred CCCCceEEecCCCc----------eeeeeEEEEEeccCCCCCCCCEEEEEe----CCeEEEEECCC--CeeE--EEEeee
Q 001391 2 GKKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS----GSQVLLYDLEA--GTLI--RPFQVF 63 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~----------~~~~V~~v~fs~~pd~~~~~~~laag~----d~~I~vwd~~t--g~~~--~~~~~~ 63 (1088)
+++-|++|++.+.. ..+..+-|+|+ |+ ++.|.++. .+.|--|.+.. |++. .....
T Consensus 14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~--~~----~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~- 86 (346)
T COG2706 14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN--PD----QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL- 86 (346)
T ss_pred CCCceEEEEEeCcccccchhhhccccCCCceEEEC--CC----CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-
Confidence 35669999988543 45678899999 98 77888765 27777777764 6542 22222
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc--------
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW-------- 134 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-------- 134 (1088)
.+..-.-++++ ++++ .++++ ...+.|.++.+..... .........|.+.
T Consensus 87 ~g~~p~yvsvd-------~~g~---~vf~AnY~~g~v~v~p~~~dG~------------l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 87 PGSPPCYVSVD-------EDGR---FVFVANYHSGSVSVYPLQADGS------------LQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred CCCCCeEEEEC-------CCCC---EEEEEEccCceEEEEEcccCCc------------cccceeeeecCCCCCCccccC
Confidence 23334667777 7762 33333 4589999999975431 1111112223333
Q ss_pred --EEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEe--ccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEE
Q 001391 135 --VFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEV--HSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVW 208 (1088)
Q Consensus 135 --I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~--~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vw 208 (1088)
+....|.| ++++|++..- --.|.+|++..++....- .-..++--..+.| .|++.+.+.-+ -+++|.+|
T Consensus 145 ~h~H~a~~tP---~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F---Hpn~k~aY~v~EL~stV~v~ 218 (346)
T COG2706 145 PHVHSANFTP---DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF---HPNGKYAYLVNELNSTVDVL 218 (346)
T ss_pred CccceeeeCC---CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE---cCCCcEEEEEeccCCEEEEE
Confidence 88899999 9998888632 235999999977653221 1122333334555 36777766544 58999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe------CCCCCEEEEEEcCCCCEEEEEEC-CCcEE
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV------GHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~------gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~ 281 (1088)
...... + ..+.++.+. ....+..+|..+|||++|..+-+ ...|.
T Consensus 219 ~y~~~~--g---------------------------~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 219 EYNPAV--G---------------------------KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred EEcCCC--c---------------------------eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 988210 0 111222211 13456778999999999987754 34788
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC-CcEEEEcC
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D-g~i~vWd~ 335 (1088)
++.+..... ....+. ....+........+. +.+|+.+.++ ..|.+|..
T Consensus 270 ~f~V~~~~g----~L~~~~--~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 270 VFSVDPDGG----KLELVG--ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEcCCCC----EEEEEE--EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 887765421 012222 222233334555565 6777777765 57888887
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-05 Score=77.60 Aligned_cols=265 Identities=9% Similarity=-0.024 Sum_probs=157.3
Q ss_pred CceEEecCCCc--eeeeeEEEEEeccCCCC-CCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccccc
Q 001391 5 DLSEWRLDVGQ--YLGEISALCFVHLPSHL-SSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 5 ~i~iWdl~~g~--~~~~V~~v~fs~~pd~~-~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
.+.+|++-+.. -..--+.|.|- |..+ ....+||+|+ -|...+|.+.+.+.+..+-..+ +.++.+....| .
T Consensus 53 sv~i~~~y~N~~~iv~~y~g~~F~--p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~s---nn~v~~~~r~c-d 126 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFYTGMTFT--PGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVS---NNDVTLVKRYC-D 126 (344)
T ss_pred eeEeccccCCchhhEEeeeccccc--chHhhccccEEEeccccceeeeecccCcccceeeeccc---ccchhhhhhhc-c
Confidence 46677776655 11112567777 6411 2246788876 5999999999866544333212 23333321111 1
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEE
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~ 160 (1088)
..- .++.++-|.++++.+++.+. .+...+... -.+.++++++ |++++++.+....|-
T Consensus 127 ~~~-----~~~i~sndht~k~~~~~~~s-------------~~~~~h~~~--~~~ns~~~sn---d~~~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 127 LKF-----PLNIASNDHTGKTMVVSGDS-------------NKFAVHNQN--LTQNSLHYSN---DPSWGSSVGDSRRVF 183 (344)
T ss_pred ccc-----ceeeccCCcceeEEEEecCc-------------ccceeeccc--cceeeeEEcC---CCceEEEecCCCcce
Confidence 121 67778889999999998543 122222111 2288999999 999999999999999
Q ss_pred EEEcCCC-ceEEE-eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 161 VWDISNS-SIILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 161 iWd~~~~-~~~~~-~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
.|.+... +.+.. ...+....-++..+ +.....+|+++.||++.|||++.....
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~---s~~~~~FAv~~Qdg~~~I~DVR~~~tp---------------------- 238 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSF---SENDLQFAVVFQDGTCAIYDVRNMATP---------------------- 238 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeee---ccCcceEEEEecCCcEEEEEecccccc----------------------
Confidence 9998653 33322 23333323344443 567789999999999999999821110
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCCCC--EEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccCc-ceEE
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS--KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA-RVWD 313 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~-~I~~ 313 (1088)
.......-..|.+.+..+.|++.|. +|...-.-+.+.+-|+++... .+.+.+ -....|.. .|..
T Consensus 239 ------m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-----~q~I~i~~d~~~~~~tq~ifg 307 (344)
T KOG4532|consen 239 ------MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-----HQVIVIPDDVERKHNTQHIFG 307 (344)
T ss_pred ------hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-----eeEEecCcccccccccccccc
Confidence 0111112235999999999998764 444444556899999998754 233321 12223333 3777
Q ss_pred EEEC--CCEEEEEeCCCcEEEEcC
Q 001391 314 CCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 314 v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
..|. +..+.+..++ .+.-|++
T Consensus 308 t~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 308 TNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred ccccCCCcccccccch-hhheeec
Confidence 7776 3444444443 2333444
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-06 Score=85.24 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=61.4
Q ss_pred CEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEE
Q 001391 258 SIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 258 ~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vW 333 (1088)
.|.+++-+|..+ .+++|++||.+-+||.+... .+.. .+..|.+.||-+.|+ |..|+++++||.+..|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S--~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVS--LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHH--HHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 388899888654 56778899999999998852 2232 678899999999998 6899999999999999
Q ss_pred cCCCceeE
Q 001391 334 GSDGKQLK 341 (1088)
Q Consensus 334 d~~~~~~~ 341 (1088)
|.+++.+.
T Consensus 252 das~~~l~ 259 (319)
T KOG4714|consen 252 DASTTFLS 259 (319)
T ss_pred cCCCceEE
Confidence 99765544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-05 Score=88.00 Aligned_cols=242 Identities=11% Similarity=0.030 Sum_probs=132.2
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC--EEEEEEeccCCCCCCCCCCcccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK--RVKLFELNFELSPNSQYQPETCVNL 122 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~--~v~iw~l~~~~~~~~~~~~~~~~~~ 122 (1088)
.|.+.|...+.. ..+..... .+..-+|| |||+......++..++ .|.+.++..+. .
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~-~~~sP~wS-------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~-------------~ 223 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHS-LSITPTWM-------HIGSGFPYLYVSYKLGVPKIFLGSLENPA-------------G 223 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCC-CcccceEc-------cCCCceEEEEEEccCCCceEEEEECCCCC-------------c
Confidence 677888765443 33433222 45667888 8874111112333343 45666665432 3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-----CCcEEEEEcCCC--ceEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-----Dg~V~iWd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
+.+..+.+ .....+|+| ||+.|+..+. |-.+.+|++..+ .....+.........+..+ +|||..
T Consensus 224 ~~lt~~~g---~~~~p~wSP---DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w---SPDG~~ 294 (428)
T PRK01029 224 KKILALQG---NQLMPTFSP---RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF---SPDGTR 294 (428)
T ss_pred eEeecCCC---CccceEECC---CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE---CCCCCE
Confidence 34444444 345689999 9988876542 334555777653 1222222111111223333 689987
Q ss_pred EEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE
Q 001391 196 IASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1088)
Q Consensus 196 l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~ 274 (1088)
|+..+ .+|...+|.+... ..+.....+..+...+....|+|||++|+..
T Consensus 295 Laf~s~~~g~~~ly~~~~~------------------------------~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQID------------------------------PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred EEEEECCCCCceEEEEECc------------------------------ccccceEEeccCCCCccceeECCCCCEEEEE
Confidence 76554 5676666654300 0112233444555667788999999998876
Q ss_pred ECC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEE-EEeC--CCcEEEEcCCCceeEEEccc
Q 001391 275 SDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII-TAGE--DCTCRVWGSDGKQLKMIKEH 346 (1088)
Q Consensus 275 s~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~-sg~~--Dg~i~vWd~~~~~~~~~~~h 346 (1088)
+.+ ..|.+||+.+++. + .+......+....|+ +..|+ ++.. ...|.++++++.....+...
T Consensus 345 ~~~~g~~~I~v~dl~~g~~------~-----~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRD------Y-----QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred EcCCCCcEEEEEECCCCCe------E-----EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 653 4689999987643 1 222222345667787 45555 3333 34688888855444444433
Q ss_pred CCCCeEEEEEcCC
Q 001391 347 IGRGIWRCLYDSL 359 (1088)
Q Consensus 347 ~~~~V~~l~~~~d 359 (1088)
.+ .+...+|+|-
T Consensus 414 ~g-~~~~p~Ws~~ 425 (428)
T PRK01029 414 SG-EKRFPSWGAF 425 (428)
T ss_pred CC-cccCceecCC
Confidence 34 3556667664
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=96.52 Aligned_cols=252 Identities=16% Similarity=0.158 Sum_probs=156.3
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
+..|.+|.. +|..++--. ... ..+.++.|++|++|.++.+.. ..-...+..++..|...|.
T Consensus 728 L~nf~GH~~-~iRai~Aid------NEN----SFiSASkDKTVKLWSik~EgD--------~~~tsaCQfTY~aHkk~i~ 788 (1034)
T KOG4190|consen 728 LCNFTGHQE-KIRAIAAID------NEN----SFISASKDKTVKLWSIKPEGD--------EIGTSACQFTYQAHKKPIH 788 (1034)
T ss_pred eecccCcHH-HhHHHHhcc------ccc----ceeeccCCceEEEEEeccccC--------ccccceeeeEhhhccCccc
Confidence 345555544 566665431 222 567777899999999986541 1112346778899999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc-CC---ceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEec
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS-PE---RCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVD 211 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~-~~---~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~ 211 (1088)
++.|.. +.++++++ |+-|.+||.--++.+.++.. +. ...+..+ .+.+...+ +.++...+|+++|.+
T Consensus 789 ~igfL~---~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl----~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 789 DIGFLA---DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL----ENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred ceeeee---ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEec----ccCcchheeeeccchhhheeeecc
Confidence 999998 88888765 89999999988777664431 11 1222222 12234444 445889999999988
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
..+-. ..-.+....+.++.+.+++..|.|.+++.+-..|.|.+.|.++++.
T Consensus 860 sce~~----------------------------~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v- 910 (1034)
T KOG4190|consen 860 SCEWT----------------------------CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV- 910 (1034)
T ss_pred cccce----------------------------eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-
Confidence 11100 0111222245667799999999999999999999999999999753
Q ss_pred CCCCceeeeceeeeccCcceEEEE-ECCCEEEEEeCCCcEEE-EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCC-LTDSFIITAGEDCTCRV-WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~-~~~~~l~sg~~Dg~i~v-Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
+. ....-......++ -+++.++....|.++.| |.. +|....+.+.... +..- +..-|.-|++...
T Consensus 911 -------IN--swrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppe-pahf--lqsvgpSLV~a~~ 978 (1034)
T KOG4190|consen 911 -------IN--SWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE-PAHF--LQSVGPSLVTAQN 978 (1034)
T ss_pred -------ec--cCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc-chhh--hhccCceeEEecc
Confidence 21 1111111111122 23567888888999998 987 6655544443322 1110 1122445777776
Q ss_pred CCCEEEEEc
Q 001391 369 DSAIKVHQF 377 (1088)
Q Consensus 369 Dg~I~iwd~ 377 (1088)
...+.+|.-
T Consensus 979 Gn~lgVYad 987 (1034)
T KOG4190|consen 979 GNILGVYAD 987 (1034)
T ss_pred CcEEEEEec
Confidence 667777754
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-05 Score=89.54 Aligned_cols=199 Identities=13% Similarity=0.045 Sum_probs=117.0
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcC---CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEec
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (1088)
+.+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++........ .......+ +|++..|+ +...
T Consensus 192 ~~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--g~~~~~~~---SpDG~~la~~~~~ 263 (430)
T PRK00178 192 VTLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--GLNGAPAW---SPDGSKLAFVLSK 263 (430)
T ss_pred eEEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--CCcCCeEE---CCCCCEEEEEEcc
Confidence 33445677899999999 99988776543 36889999887654322111 11112333 68888776 4444
Q ss_pred CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CC
Q 001391 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR 278 (1088)
Q Consensus 202 dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg 278 (1088)
+| .|.+||+. ++. ...+..+........|+|||+.++..+. ++
T Consensus 264 ~g~~~Iy~~d~~---------------------------------~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 264 DGNPEIYVMDLA---------------------------------SRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred CCCceEEEEECC---------------------------------CCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 55 57777876 222 2334445555667889999998876654 33
Q ss_pred --cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-CC--cEEEEcCCCceeEEEcccCCCCe
Q 001391 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 279 --~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg--~i~vWd~~~~~~~~~~~h~~~~V 351 (1088)
.|.++++.+++. +.+ ...+ .......|+ +..|+..+. ++ .|.+||+.+.....+..- . ..
T Consensus 310 ~~~iy~~d~~~g~~------~~l---t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~-~~ 376 (430)
T PRK00178 310 KPQIYKVNVNGGRA------ERV---TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-S-LD 376 (430)
T ss_pred CceEEEEECCCCCE------EEe---ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-C-CC
Confidence 566677766432 111 2112 222345666 566665553 33 478888844334444321 1 12
Q ss_pred EEEEEcCCCCEEEEEeCC-CC--EEEEEcCC
Q 001391 352 WRCLYDSLSSLLVTAGFD-SA--IKVHQFQA 379 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~D-g~--I~iwd~~~ 379 (1088)
....|+|||+.++..+.+ |. +.+.++.+
T Consensus 377 ~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 356899999988766543 33 44555543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.9e-05 Score=87.66 Aligned_cols=198 Identities=12% Similarity=0.073 Sum_probs=113.2
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEc-CC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE-EecCC
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYN 203 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg 203 (1088)
+..+...+.+..|+| ||+.|+..+. ++ .|.+||+.+++.......+. ......+ +||+..|+. .+.+|
T Consensus 213 l~~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g--~~~~~~w---SPDG~~La~~~~~~g 284 (448)
T PRK04792 213 LLRSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG--INGAPRF---SPDGKKLALVLSKDG 284 (448)
T ss_pred eecCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC--CcCCeeE---CCCCCEEEEEEeCCC
Confidence 345567889999999 9998877653 22 58889998876532221111 1122333 688887764 56666
Q ss_pred e--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CC--
Q 001391 204 E--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR-- 278 (1088)
Q Consensus 204 ~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg-- 278 (1088)
. |.++|+. ++. ...+..+.......+|+|||++++..+. ++
T Consensus 285 ~~~Iy~~dl~---------------------------------tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~ 330 (448)
T PRK04792 285 QPEIYVVDIA---------------------------------TKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKP 330 (448)
T ss_pred CeEEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence 5 6666665 222 2334445556677899999998876654 34
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-CCc--EEEEcCCCceeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCT--CRVWGSDGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg~--i~vWd~~~~~~~~~~~h~~~~V~~ 353 (1088)
.|.++|+.+++. +.+ +..++ .....+|+ +..|+..+. ++. |.++|+.+.....+.... ....
T Consensus 331 ~Iy~~dl~~g~~------~~L---t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ 397 (448)
T PRK04792 331 QIYRVNLASGKV------SRL---TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDES 397 (448)
T ss_pred eEEEEECCCCCE------EEE---ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCCC
Confidence 455566665432 111 22222 23345676 556655443 444 445666444444443322 1234
Q ss_pred EEEcCCCCEEEEEeC-CCC--EEEEEcCCC
Q 001391 354 CLYDSLSSLLVTAGF-DSA--IKVHQFQAF 380 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~-Dg~--I~iwd~~~~ 380 (1088)
..|+|||+.|+.... +|. +.+++.++.
T Consensus 398 ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 398 PSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 579999997766554 443 555565543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00029 Score=81.84 Aligned_cols=271 Identities=10% Similarity=-0.000 Sum_probs=144.7
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEE----EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGI----SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP 110 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i----~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~ 110 (1088)
..|.++. ++.|.-+|.++|+.+.+...........- .++.. +...++ .+++...++.+.-+|.+++.
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~v~~~----~v~v~~~~g~l~ald~~tG~-- 141 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG--VTVAGG----KVYIGSEKGQVYALNAEDGE-- 141 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccc--cEEECC----EEEEEcCCCEEEEEECCCCC--
Confidence 3444444 68999999999999887764321111110 01100 000122 56666668899999987643
Q ss_pred CCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE----EEEee
Q 001391 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKL 186 (1088)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~----~s~~~ 186 (1088)
.+-+.... +.+.+--.. .+..++.+..++.+.-+|..+|+.+-+......... .+...
T Consensus 142 -------------~~W~~~~~-~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v 203 (394)
T PRK11138 142 -------------VAWQTKVA-GEALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT 203 (394)
T ss_pred -------------CcccccCC-CceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE
Confidence 11111111 122221111 234566777899999999999998877653311100 01111
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC-CCEEEEEEc
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWS 265 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~v~~s 265 (1088)
.+..++.++.+|.+...|..+++.. |..... .+. ..+. .....+..+
T Consensus 204 -----~~~~v~~~~~~g~v~a~d~~~G~~~-----------------------W~~~~~-~~~---~~~~~~~~~~~~~s 251 (394)
T PRK11138 204 -----AFGGAIVGGDNGRVSAVLMEQGQLI-----------------------WQQRIS-QPT---GATEIDRLVDVDTT 251 (394)
T ss_pred -----ECCEEEEEcCCCEEEEEEccCChhh-----------------------heeccc-cCC---CccchhcccccCCC
Confidence 1235666778898888887732211 110000 000 0000 000011112
Q ss_pred C--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEE
Q 001391 266 S--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKM 342 (1088)
Q Consensus 266 p--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~ 342 (1088)
| .+..++.++.++.+...|..+++. +-. ...+ ....+...+..++.++.+|.+..+|. +|+.+..
T Consensus 252 P~v~~~~vy~~~~~g~l~ald~~tG~~--------~W~-~~~~---~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 252 PVVVGGVVYALAYNGNLVALDLRSGQI--------VWK-REYG---SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred cEEECCEEEEEEcCCeEEEEECCCCCE--------EEe-ecCC---CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 2 245677777889999999988642 110 1111 11223445778888899999999999 7776654
Q ss_pred EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 343 ~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..........+..+ .+.+|+.++.||.+.+.|..
T Consensus 320 ~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 320 QSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred ccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence 43222211222222 24568888999999998874
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0014 Score=73.05 Aligned_cols=261 Identities=11% Similarity=0.110 Sum_probs=146.1
Q ss_pred CCceEEecCCCceeeeeEE-----EEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeCC--
Q 001391 4 KDLSEWRLDVGQYLGEISA-----LCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHG-- 65 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~~-----v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~~-- 65 (1088)
++|.+-|..+++..+.|.. ..+| || ++.|.++. +..|.|||.++++.++.+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~s--pD----g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVA--SD----GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeEC--CC----CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 7899999999886555441 2388 88 55555432 38999999999999999886332
Q ss_pred ----cceEEEEecccccccCCCccceeeEEEEE--C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 66 ----IRLHGISCNFINCTEGSVSTRVTFEVALF--G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 66 ----~~V~~i~~s~~~~~~~~d~~~~~~~la~~--g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
..-..++++ ||| ..+.++ . +..|.+.|+.... .+..+.- .+...-.
T Consensus 101 ~~~~~~~~~~~ls-------~dg----k~l~V~n~~p~~~V~VvD~~~~k---------------vv~ei~v-p~~~~vy 153 (352)
T TIGR02658 101 FLVGTYPWMTSLT-------PDN----KTLLFYQFSPSPAVGVVDLEGKA---------------FVRMMDV-PDCYHIF 153 (352)
T ss_pred hhccCccceEEEC-------CCC----CEEEEecCCCCCEEEEEECCCCc---------------EEEEEeC-CCCcEEE
Confidence 123477888 888 444443 3 7999999998643 3333221 1111111
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCC-CceE-EE--eccCCceeEEEE-eeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISN-SSII-LE--VHSPERCLLYSM-KLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~~~-~~--~~~~~~~~~~s~-~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
..+ +...+ +-+.||......+.. ++.. .. +.......++.- .+ ...++.++..... |+|.+-|+...
T Consensus 154 ~t~----e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~--~~~dg~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 154 PTA----NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAY--SNKSGRLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred Eec----CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCce--EcCCCcEEEEecC-CeEEEEecCCC
Confidence 111 11111 112344444433322 1111 11 000101111110 11 0226767766655 99999997521
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-------CCCCCEEEEEEcCCCCEEEEEE----------C
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVS----------D 276 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s~s----------~ 276 (1088)
... ....+..+. -..+.+.-++++|+++++.... .
T Consensus 226 ~~~----------------------------~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 226 DAK----------------------------FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred cce----------------------------ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 111 111111111 0223344599999999887743 1
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEe-CCCcEEEEcC-CCceeEEEc
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~-~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
.+.|.++|..+.+ .+. .... ..+++.++++ +. +|++.. .++.|.+.|. +++.+..+.
T Consensus 278 ~~~V~ViD~~t~k--------vi~-~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 278 SRFLFVVDAKTGK--------RLR-KIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCEEEEEECCCCe--------EEE-EEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 2579999988853 333 1222 3478999998 45 666555 6789999999 788888873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.6e-05 Score=87.51 Aligned_cols=231 Identities=10% Similarity=-0.015 Sum_probs=129.3
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.++|...+. ...+..+.. .+....|+ |||+ .++.++. ...|.+|++....
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~-~~~~p~wS-------pDG~---~la~~s~~~~~~~l~~~~l~~g~------------- 234 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSRE-PILSPRWS-------PDGK---RIAYVSFEQKRPRIFVQNLDTGR------------- 234 (430)
T ss_pred EEEEECCCCCC-ceEEecCCC-ceeeeeEC-------CCCC---EEEEEEcCCCCCEEEEEECCCCC-------------
Confidence 58888877544 344444333 68899999 8883 3433332 2468888887543
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+.+.... +.+...+|+| ||+.|+ +...++ .|.+||+.+++... +..+. ....+..+ ++++..|+.
T Consensus 235 ~~~l~~~~---g~~~~~~~Sp---DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~-~~~~~~~~---spDg~~i~f 303 (430)
T PRK00178 235 REQITNFE---GLNGAPAWSP---DGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP-AIDTEPFW---GKDGRTLYF 303 (430)
T ss_pred EEEccCCC---CCcCCeEECC---CCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC-CCcCCeEE---CCCCCEEEE
Confidence 22333233 3455789999 998776 444454 58888998876533 32221 12223333 578877665
Q ss_pred Ee-cCC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 199 GT-IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 199 g~-~dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
.+ .+| .|.++++. .+.. ..+...........|+|+|++++..+
T Consensus 304 ~s~~~g~~~iy~~d~~---------------------------------~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 304 TSDRGGKPQIYKVNVN---------------------------------GGRA-ERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCceEEEEECC---------------------------------CCCE-EEeecCCCCccceEECCCCCEEEEEE
Confidence 44 344 45555654 1211 11111112234578999999988776
Q ss_pred CC-C--cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-CC--cEEEEcCCCceeEEEcccC
Q 001391 276 DD-R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHI 347 (1088)
Q Consensus 276 ~D-g--~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg--~i~vWd~~~~~~~~~~~h~ 347 (1088)
.+ + .|.+||+.++.. +.+. .. .......|+ +..++..+. ++ .+.+++.+|.....+..+.
T Consensus 350 ~~~~~~~l~~~dl~tg~~------~~lt---~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSV------RILT---DT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred ccCCceEEEEEECCCCCE------EEcc---CC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 53 3 578888877532 2221 11 111234566 455555443 33 4666677776666665554
Q ss_pred CCCeEEEEEcC
Q 001391 348 GRGIWRCLYDS 358 (1088)
Q Consensus 348 ~~~V~~l~~~~ 358 (1088)
+ .+...+|+|
T Consensus 418 g-~~~~p~ws~ 427 (430)
T PRK00178 418 G-EVREPSWSP 427 (430)
T ss_pred C-CcCCCccCC
Confidence 4 366666665
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7e-06 Score=82.77 Aligned_cols=250 Identities=12% Similarity=0.166 Sum_probs=134.9
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeC-CcceEEEEecccccccCCCcc----ceeeEEEE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVST----RVTFEVAL 93 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~-~~~V~~i~~s~~~~~~~~d~~----~~~~~la~ 93 (1088)
|+.+.|+ -+ ..|+.+. ++.+.....-++.++...+.-. -.+-+..+.+.. |+.. ..+..+++
T Consensus 39 ~~~~~~v--~~-----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~se-----p~p~~~~s~~~t~V~~ 106 (319)
T KOG4714|consen 39 LSKVSLS--AE-----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSE-----IDPNDACTMTDNRVCI 106 (319)
T ss_pred EEEeech--hh-----heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCC-----CCCcccccccCCceEe
Confidence 6777777 33 3455555 6777777777666655443211 123444444322 2111 01134555
Q ss_pred EC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-----cCCcEEEEEcCCC
Q 001391 94 FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-----SDNSIRVWDISNS 167 (1088)
Q Consensus 94 ~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-----~Dg~V~iWd~~~~ 167 (1088)
.+ |+.+.+.+.+.. ++..+....-...-.+.+... .++.+.+++ .-+..+.|+++..
T Consensus 107 ~~~dg~~~v~s~~~~--------------~~~~~~i~~~~~~~as~~~~~---~~~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKD--------------LALMSRIPSIHSGSASRKICR---HGNSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred cCCCceEEEEechHH--------------Hhhhhhcccccccccccceee---cccEEecCCcceEeeccceeeeccccc
Confidence 44 899999987741 122222221111111222222 334444332 1223455665443
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
+....-+..... +.+++.+ .....+++.|+.||.+.+||++. ..-
T Consensus 170 ~t~~~~~~~~~~-v~~l~~h--p~qq~~v~cgt~dg~~~l~d~rn--------------------------------~~~ 214 (319)
T KOG4714|consen 170 KTLIPSKKALDA-VTALCSH--PAQQHLVCCGTDDGIVGLWDARN--------------------------------VAM 214 (319)
T ss_pred cccccccccccc-chhhhCC--cccccEEEEecCCCeEEEEEccc--------------------------------ccc
Confidence 322111111111 3333332 33456888999999999999981 122
Q ss_pred eeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCccc------------CCCCcee---eeceeeeccCcce
Q 001391 248 NLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWK------------DSDSIEE---VGSSVLYGHNARV 311 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~------------~~~~~~~---i~~~~~~~h~~~I 311 (1088)
+...++.|+..|..|-|+| ++..|.++++||.+.-||..+.-.. ..+..+. +.+ .+......|
T Consensus 215 p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~-ll~~~~~Si 293 (319)
T KOG4714|consen 215 PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITS-LLPSRSLSI 293 (319)
T ss_pred hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeec-cccccceee
Confidence 3445678999999999999 5678999999999999998753211 1111111 110 112223345
Q ss_pred EEEEECCCEEEEEeCCCcEEEEc
Q 001391 312 WDCCLTDSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 312 ~~v~~~~~~l~sg~~Dg~i~vWd 334 (1088)
.++...+..|++|+.-+.|++.+
T Consensus 294 nsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 294 NSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeeeccCceEEeccccceEEEec
Confidence 55556688888888888887764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-06 Score=94.31 Aligned_cols=299 Identities=13% Similarity=0.156 Sum_probs=172.2
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeC
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGE 326 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~ 326 (1088)
-.+..+.||...|..++-..+...+++++.|++|++|.++..... ....-..++...|..+|.++.|-...-..++.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---IGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---cccceeeeEhhhccCcccceeeeeccceeeec
Confidence 456678899999999988888888999999999999999764220 01111125888999999999998444344566
Q ss_pred CCcEEEEcC-CCceeEEEcc-cCCCCeEEEEEcC--CCCEEEEE-eCCCCEEEEEcCCCCCCcccCCccccccCCCcceE
Q 001391 327 DCTCRVWGS-DGKQLKMIKE-HIGRGIWRCLYDS--LSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~-h~~~~V~~l~~~~--dg~~l~tg-~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1088)
||.|.+||. .|+++.++.. .....+..+...+ +..+++.| +...+|+++|.+.-. +-. -+
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce------------~~~---E~ 867 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE------------WTC---EL 867 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc------------cee---eE
Confidence 999999998 7777764321 1111233444333 44444444 788999999985311 001 11
Q ss_pred EeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEecCCeEEEEEeccCCcce-eEEeeeecCCcceEEEecCCCCCCC
Q 001391 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVN-WNKILQVSEGMPIICMDLLSNEPKY 479 (1088)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~ 479 (1088)
.++ + ..+.+..+|+++..+.|. +.++-++|.+...+..+..... |+.. +... ..+
T Consensus 868 kVc--n-------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-----ecdl---------lql 924 (1034)
T KOG4190|consen 868 KVC--N-------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-----ECDL---------LQL 924 (1034)
T ss_pred Eec--c-------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-----cchh---------hhh
Confidence 111 0 012235689999999774 4455678887754443333221 4322 1111 112
Q ss_pred cCCCCCeEEEecCCCCEEE-EEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 480 PCGIDDWVALGDGKGNMTI-VRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 480 s~~~~~~la~g~~dg~I~i-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
..+.++.++....|..+-+ |...++....+ .+-+.++.+ . ...-|.-|++......+.+|.-.....
T Consensus 925 aapsdq~L~~saldHslaVnWhaldgimh~q----~kpppepah-f------lqsvgpSLV~a~~Gn~lgVYad~a~~h- 992 (1034)
T KOG4190|consen 925 AAPSDQALAQSALDHSLAVNWHALDGIMHLQ----DKPPPEPAH-F------LQSVGPSLVTAQNGNILGVYADSAELH- 992 (1034)
T ss_pred cCchhHHHHhhcccceeEeeehhcCCeeeec----cCCCCcchh-h------hhccCceeEEeccCcEEEEEecchhhh-
Confidence 2345567777777777777 75544322110 000011111 0 112345677776777788885321110
Q ss_pred ccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEE
Q 001391 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (1088)
Q Consensus 559 ~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~I 606 (1088)
.+ ...+---+. ...+..|+++.-|-+.-...|.+.|.|.+
T Consensus 993 -a~---stitKiR~d----~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 993 -AE---STITKIRPD----EFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred -hh---hhhcccccc----ccCCccceeeeccccchhhccCCCCceee
Confidence 00 000000111 23556788888887777778999998876
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00032 Score=90.44 Aligned_cols=221 Identities=8% Similarity=-0.048 Sum_probs=126.6
Q ss_pred cEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCCceEEEeccC-C---------------ceeEEEEeeecCCC-CCcE
Q 001391 134 WVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSP-E---------------RCLLYSMKLWGDNL-EALR 195 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~-~---------------~~~~~s~~~~~~s~-~~~~ 195 (1088)
....+++.+ +++.|+++. ..+.|+++|+.++.. .++.+. . ...-+.+++ ++ ++.+
T Consensus 625 ~P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~---dp~~g~L 697 (1057)
T PLN02919 625 RPQGLAYNA---KKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF---EPVNEKV 697 (1057)
T ss_pred CCcEEEEeC---CCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEE---ecCCCeE
Confidence 468899998 888766664 356799999877643 222110 0 001123444 34 5667
Q ss_pred EEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEE
Q 001391 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSV 274 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~ 274 (1088)
+++.+.++.|++||..+..... +..++... .. .+.. .....-....+|+++|+++ .+++-
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~-------~~G~G~~~------~~----~g~~--~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRV-------FSGDGYER------NL----NGSS--GTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEE-------EecCCccc------cC----CCCc--cccccccCccEEEEeCCCCEEEEEE
Confidence 7777788999999986321110 00000000 00 0000 0001123467899999998 45666
Q ss_pred ECCCcEEEEEcCCCcccC---CCCceeeeceeee--------ccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeE
Q 001391 275 SDDRSARIWEVRAEYWKD---SDSIEEVGSSVLY--------GHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK 341 (1088)
Q Consensus 275 s~Dg~v~iWd~~~~~~~~---~~~~~~i~~~~~~--------~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~ 341 (1088)
+.++.|++||+.++.... ...........+. ..-.....++++ +.++++-..++.|++||..+..+.
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 778999999998653200 0000000000000 001123567776 567888888999999999554444
Q ss_pred EEcccC-------------CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 342 MIKEHI-------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 342 ~~~~h~-------------~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
.+.+.. ......++++++|+++++-+.++.|++||+.+.
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 433211 013568999999999999899999999999653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00016 Score=85.10 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=125.9
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CC--CEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE--KRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd--~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.++|...... +.+.... ..+....|| |||+ .++.++ .+ ..|.+||+....
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~-~~~~~p~wS-------PDG~---~La~~s~~~g~~~L~~~dl~tg~------------- 253 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSP-EPLMSPAWS-------PDGR---KLAYVSFENRKAEIFVQDIYTQV------------- 253 (448)
T ss_pred EEEEEeCCCCCc-eEeecCC-CcccCceEC-------CCCC---EEEEEEecCCCcEEEEEECCCCC-------------
Confidence 677788655433 3333323 368889999 8883 333333 23 357777776432
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEE-EEcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~las-gs~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+.+..+.+ .....+|+| ||+.|+. ...++. |.++|+.+++... +..+. .......+ ++|+..|+.
T Consensus 254 ~~~lt~~~g---~~~~~~wSP---DG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~-~~~~~p~w---SpDG~~I~f 322 (448)
T PRK04792 254 REKVTSFPG---INGAPRFSP---DGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR-AIDTEPSW---HPDGKSLIF 322 (448)
T ss_pred eEEecCCCC---CcCCeeECC---CCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC-CCccceEE---CCCCCEEEE
Confidence 233333333 334689999 9997764 455665 7777887776433 22221 12223333 578877665
Q ss_pred Ee-cCCe--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 199 GT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 199 g~-~dg~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
.+ .++. |.++|+. +++ ...+..+.......+|+|||++++..+
T Consensus 323 ~s~~~g~~~Iy~~dl~---------------------------------~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 323 TSERGGKPQIYRVNLA---------------------------------SGK-VSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCCceEEEEECC---------------------------------CCC-EEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 44 3444 4444554 222 112221222234578999999987765
Q ss_pred C-CCc--EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE-EeCCCc--EEEEcCCCceeEEEcccC
Q 001391 276 D-DRS--ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT-AGEDCT--CRVWGSDGKQLKMIKEHI 347 (1088)
Q Consensus 276 ~-Dg~--v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s-g~~Dg~--i~vWd~~~~~~~~~~~h~ 347 (1088)
. ++. |.++|+.++.. +.+ ... .......|+ +..|+. ...++. +.+++.+|+....+..+.
T Consensus 369 ~~~g~~~I~~~dl~~g~~------~~l-----t~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 369 RTNGKFNIARQDLETGAM------QVL-----TST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred ecCCceEEEEEECCCCCe------EEc-----cCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 5 343 44566666432 111 111 111123566 455544 444443 667777888777776665
Q ss_pred CCCeEEEEEcC
Q 001391 348 GRGIWRCLYDS 358 (1088)
Q Consensus 348 ~~~V~~l~~~~ 358 (1088)
+ .+...+|+|
T Consensus 437 g-~~~~p~Wsp 446 (448)
T PRK04792 437 G-EVKSPAWSP 446 (448)
T ss_pred C-CcCCCccCC
Confidence 5 366777776
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-05 Score=85.56 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=66.2
Q ss_pred ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEE
Q 001391 576 SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655 (1088)
Q Consensus 576 ~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l 655 (1088)
..+|-..++.+++|||+++|+++++|..|+|=.++.... + -..+.||. ..|+.++.. ++ ..|
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~----------I--esfclGH~--eFVS~isl~---~~-~~L 208 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV----------I--ESFCLGHK--EFVSTISLT---DN-YLL 208 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc----------h--hhhccccH--hheeeeeec---cC-cee
Confidence 458999999999999999999999999999988774211 1 12345565 689999888 33 568
Q ss_pred EEecCCCeEEEEEeecCCcc
Q 001391 656 RSTGGDGCICYLEYDKDRES 675 (1088)
Q Consensus 656 ~t~g~Dg~i~iw~~~~~~~~ 675 (1088)
+|+|+|+++++|++..+.+.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eecCCCCcEEEEecccCCcc
Confidence 99999999999999887654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00024 Score=79.05 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=76.3
Q ss_pred EEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~ 148 (1088)
.-+.|| |-| .+|++.--.-|.+|--+. +..++.+ .|+ .|.-+.||| ..+
T Consensus 214 tyv~wS-------P~G----TYL~t~Hk~GI~lWGG~~---------------f~r~~RF-~Hp-~Vq~idfSP---~Ek 262 (698)
T KOG2314|consen 214 TYVRWS-------PKG----TYLVTFHKQGIALWGGES---------------FDRIQRF-YHP-GVQFIDFSP---NEK 262 (698)
T ss_pred eeEEec-------CCc----eEEEEEeccceeeecCcc---------------HHHHHhc-cCC-CceeeecCC---ccc
Confidence 456778 777 789999889999996442 3333333 254 488999999 999
Q ss_pred EEEEEEc-----------CCcEEEEEcCCCceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 149 SLAIGCS-----------DNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 149 ~lasgs~-----------Dg~V~iWd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+|+|=+. ...++|||+.+|.....+.... ....|.+- ..+-|+.++|--+. ..|.|++..
T Consensus 263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~f--rWS~DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 263 YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIF--RWSHDDKYFARMTG-NSISIYETP 334 (698)
T ss_pred eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceE--EeccCCceeEEecc-ceEEEEecC
Confidence 9999653 2579999999999888776532 22333332 23567888887655 678888865
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0028 Score=65.97 Aligned_cols=234 Identities=10% Similarity=0.054 Sum_probs=124.0
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
.+| .+||+-.|..|.|=..+.+- . .+..++ +..+.-.-.=.-++|+| |+.+||.+...|+|++
T Consensus 7 ~~G----k~lAi~qd~~iEiRsa~Ddf------~---si~~kc-qVpkD~~PQWRkl~WSp---D~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 7 SDG----KLLAILQDQCIEIRSAKDDF------S---SIIGKC-QVPKDPNPQWRKLAWSP---DCTLLAYAESTGTIRV 69 (282)
T ss_pred CCC----cEEEEEeccEEEEEeccCCc------h---heeEEE-ecCCCCCchheEEEECC---CCcEEEEEcCCCeEEE
Confidence 677 78888888887776554321 0 011111 11111112346799999 9999999999999999
Q ss_pred EEcCCCceEEEeccCC------ceeEEEEeeecCCCC---CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 162 WDISNSSIILEVHSPE------RCLLYSMKLWGDNLE---ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~------~~~~~s~~~~~~s~~---~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
+|+... .+..+.... ...+-.+.|.....+ ...|+.-+.+|.++-+-+..+...+
T Consensus 70 fdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~--------------- 133 (282)
T PF15492_consen 70 FDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG--------------- 133 (282)
T ss_pred Eecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc---------------
Confidence 999653 333433211 122333333322111 1134444556666666553111000
Q ss_pred CCceeEecccccceeeeEEEeC-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
........+.. +...|.++.++|..+.|+.|+.... +++. -..-...+
T Consensus 134 -----------y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--------------s~a~~~GL 182 (282)
T PF15492_consen 134 -----------YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--------------SKASSCGL 182 (282)
T ss_pred -----------ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--------------ccccccCc
Confidence 11222333333 4778999999999988877665322 1100 00001111
Q ss_pred EEEEEC---CCEE-EEEeCCCc------EEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 312 WDCCLT---DSFI-ITAGEDCT------CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 312 ~~v~~~---~~~l-~sg~~Dg~------i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
++=..- +.+. ++..+|+. ..+|.+..-.+...++...+.|..|.++|||..||+...+|.|.+|++..
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 111111 1111 22222222 12333311111122233334799999999999999999999999999954
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00038 Score=81.30 Aligned_cols=204 Identities=11% Similarity=-0.046 Sum_probs=112.4
Q ss_pred CCCCcEEEEEEecccCCCCEE---EEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-cCC
Q 001391 130 RLSHWVFDVCFLKVCNGNRSL---AIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYN 203 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~l---asgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg 203 (1088)
.....+.+=+|+| ||+.+ ++...++ .|.+.++.+++.......+. ......+ +|||..|+... .+|
T Consensus 182 ~~~~~~~sP~wSP---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--~~~~p~w---SPDG~~Laf~s~~~g 253 (428)
T PRK01029 182 QEHSLSITPTWMH---IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--NQLMPTF---SPRKKLLAFISDRYG 253 (428)
T ss_pred cCCCCcccceEcc---CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC--CccceEE---CCCCCEEEEEECCCC
Confidence 3445567789999 98742 2444443 57777887775433222111 1122333 68998777543 223
Q ss_pred ----eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCC
Q 001391 204 ----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDR 278 (1088)
Q Consensus 204 ----~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg 278 (1088)
.+.+|++.... .+.......++.+.....+|+|||+.|+..+ .++
T Consensus 254 ~~di~~~~~~~~~g~------------------------------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 254 NPDLFIQSFSLETGA------------------------------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred CcceeEEEeecccCC------------------------------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 23335554100 1122222223334456789999999887765 466
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h~~~~V~~ 353 (1088)
...+|.+..... ..... .+..+...+....|+ +..|+..+.+ ..|.+||+.+.....+..... .+..
T Consensus 304 ~~~ly~~~~~~~-----g~~~~--~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~-~~~~ 375 (428)
T PRK01029 304 RPRIYIMQIDPE-----GQSPR--LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE-NKES 375 (428)
T ss_pred CceEEEEECccc-----ccceE--EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC-Cccc
Confidence 666665432100 01111 333344456677888 5666655433 368999995444455543333 4678
Q ss_pred EEEcCCCCEEEEEeC---CCCEEEEEcCC
Q 001391 354 CLYDSLSSLLVTAGF---DSAIKVHQFQA 379 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~---Dg~I~iwd~~~ 379 (1088)
..|+|||+.|+.... ...|.++++.+
T Consensus 376 p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 376 PSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 899999997765433 24566677754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.2e-06 Score=60.23 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=36.1
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+++..+.+|.+.|.+|+|+|++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0012 Score=85.27 Aligned_cols=269 Identities=12% Similarity=0.091 Sum_probs=140.9
Q ss_pred EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeee--C-----------CcceEEEEecccccccCCCccce
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF--H-----------GIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~--~-----------~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
.++++ ++ .+++.++-. ++.|++||.. |..+..+... . -...+++++. ++++
T Consensus 572 gvavd--~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-------~~gn-- 636 (1057)
T PLN02919 572 KLAID--LL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-------AKKN-- 636 (1057)
T ss_pred eEEEE--CC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-------CCCC--
Confidence 56777 54 145555555 5899999975 5555444321 0 0135778887 5541
Q ss_pred eeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccCCCC-EEEEEEcCCc
Q 001391 88 TFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNR-SLAIGCSDNS 158 (1088)
Q Consensus 88 ~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~-~lasgs~Dg~ 158 (1088)
.+.++ .+++.|+++|+...... .+... ......+.+ .-..-++++|+| ++. +.++.+.++.
T Consensus 637 -~LYVaDt~n~~Ir~id~~~~~V~--tlag~----G~~g~~~~gg~~~~~~~ln~P~gVa~dp---~~g~LyVad~~~~~ 706 (1057)
T PLN02919 637 -LLYVADTENHALREIDFVNETVR--TLAGN----GTKGSDYQGGKKGTSQVLNSPWDVCFEP---VNEKVYIAMAGQHQ 706 (1057)
T ss_pred -EEEEEeCCCceEEEEecCCCEEE--EEecc----CcccCCCCCChhhhHhhcCCCeEEEEec---CCCeEEEEECCCCe
Confidence 33333 34688999987642200 00000 000000000 012346899998 554 5556667889
Q ss_pred EEEEEcCCCceEEEecc--------CC-----ceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 159 IRVWDISNSSIILEVHS--------PE-----RCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 159 V~iWd~~~~~~~~~~~~--------~~-----~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
|++||..++....-... .. ......+++ ++++. ++++.+.++.|++||+.++.......
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav---spdG~~LYVADs~n~~Irv~D~~tg~~~~~~g---- 779 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL---SPDLKELYIADSESSSIRALDLKTGGSRLLAG---- 779 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE---eCCCCEEEEEECCCCeEEEEECCCCcEEEEEe----
Confidence 99999987754321100 00 001122333 46666 55566677999999987332110000
Q ss_pred ccCCCCCC-CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--
Q 001391 225 NHAHGSSS-DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-- 301 (1088)
Q Consensus 225 ~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~-- 301 (1088)
+... .......... .+... ...-....+++++++|..+++-+.++.|++||..++.. ......
T Consensus 780 ----g~~~~~~~l~~fG~~--dG~g~---~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v-----~tiaG~G~ 845 (1057)
T PLN02919 780 ----GDPTFSDNLFKFGDH--DGVGS---EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV-----TTLAGTGK 845 (1057)
T ss_pred ----cccccCcccccccCC--CCchh---hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE-----EEEeccCC
Confidence 0000 0000000000 00000 00112346899999999999999999999999987543 010000
Q ss_pred ------eeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC
Q 001391 302 ------SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 302 ------~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~ 336 (1088)
....+.-.....++++ +.++++-+.++.|++||+.
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 0011122346677886 6778888889999999993
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0045 Score=63.05 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=70.1
Q ss_pred CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
..+++.+|..+.+.--|..+++. + -..--..+|-+-+.- +++++.|+..|.+++-+. +|.....+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~--------~---We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL--------I---WEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE--------E---eehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 34667788888888888877643 1 111122344443333 888999999999999999 7877777765
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 346 HIGRGIW-RCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 346 h~~~~V~-~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
-.. |- +....+++.++..|+.|++....|...
T Consensus 92 ~~~--vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 92 LET--VKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred hhh--hccceEEcCCCceEEEecCCCcEEEecccc
Confidence 443 32 344678999999999999999988854
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00046 Score=70.26 Aligned_cols=198 Identities=14% Similarity=0.065 Sum_probs=123.9
Q ss_pred EEEEEeccc--CCCCEEEEEEcCCcEEEEEcCCCceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 136 FDVCFLKVC--NGNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 136 ~~v~f~p~~--~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
..+.|-|.+ ....+||.||.-|...+|...+.+....+- .+.+.+...-.+ -....-+..++.|.++++.++.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~---cd~~~~~~i~sndht~k~~~~~- 146 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY---CDLKFPLNIASNDHTGKTMVVS- 146 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh---cccccceeeccCCcceeEEEEe-
Confidence 345565522 133589999999999999998765433322 111111000000 0112245566788889988887
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC--EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS--IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
.... .+.-|... +.++++++|++++++.++.+.|-+|.+.....
T Consensus 147 --------------------------------~~s~--~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se 192 (344)
T KOG4532|consen 147 --------------------------------GDSN--KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE 192 (344)
T ss_pred --------------------------------cCcc--cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc
Confidence 1110 11123333 78899999999999999999999999987532
Q ss_pred cCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC--CCceeEE----EcccCCCCeEEEEEcCCCC-
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKM----IKEHIGRGIWRCLYDSLSS- 361 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~--~~~~~~~----~~~h~~~~V~~l~~~~dg~- 361 (1088)
...+ ......+..=.+..|+ +..++++..||++.|||+ .+.+... -..|.| .+..+.|++.|.
T Consensus 193 ------y~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 193 ------YIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFSLYGLL 264 (344)
T ss_pred ------eeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEecCCCcc
Confidence 1121 1333334444567777 678999999999999999 3333222 233666 799999998664
Q ss_pred -EEEEEeCCCCEEEEEcCC
Q 001391 362 -LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 362 -~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|.-.-.-+.+.+-|++.
T Consensus 265 DLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 265 DLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eEEEEecCcceEEEEEccc
Confidence 444444456788888754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.6e-06 Score=59.73 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=35.9
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
+++..+.+|.+.|++|+|+| ++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 56788999999999999999 999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-05 Score=79.07 Aligned_cols=241 Identities=14% Similarity=0.124 Sum_probs=141.1
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-----eEEEeccCCce-----------eEEEEeeecCCCCCcE
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERC-----------LLYSMKLWGDNLEALR 195 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-----~~~~~~~~~~~-----------~~~s~~~~~~s~~~~~ 195 (1088)
.+.|+++.|.. .|.+|++|...|.|.++.-+... ....+++++.. .+..+.++.. .....
T Consensus 26 ad~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~-t~r~h 101 (460)
T COG5170 26 ADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD-TGRNH 101 (460)
T ss_pred cceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC-CCcce
Confidence 47799999988 99999999888999999765432 12223333211 1122333322 23345
Q ss_pred EEEEecCCeEEEEEeccCccc--cCCC-CCCCccCCCCCC-CCceeEeccccccee-----eeE-EEeCCCCCEEEEEEc
Q 001391 196 IASGTIYNEIIVWKVDWEHVA--PLLN-SPEGNHAHGSSS-DFKCFKLQDQQHTAV-----NLF-RLVGHEGSIFRIEWS 265 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~--~~~~-~~~~~s~~~~~~-~~~~~~~~~~~~~~~-----~~~-~~~gh~~~V~~v~~s 265 (1088)
+...+.|.+|++|.+....+. .+.. .....++-+... ....+.+........ +.+ ....|.-.|.++.|.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 666678999999999844221 1111 111111111111 111122111111111 111 125788899999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-----CcceEEEEECC---CEEEEEeCCCcEEEEcCCC
Q 001391 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-----NARVWDCCLTD---SFIITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 266 p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-----~~~I~~v~~~~---~~l~sg~~Dg~i~vWd~~~ 337 (1088)
.|.+.++++ +|-.|.+|++..... .+......+| ..-|++..|++ .++.-.+..|.|++-|+..
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~-------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDG-------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred Cchheeeec-cceeeeeccccccCC-------ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 999988887 566799999876422 1111123333 34578888983 5777778899999999842
Q ss_pred c-----eeEEE------------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC--CCCCccc
Q 001391 338 K-----QLKMI------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLE 386 (1088)
Q Consensus 338 ~-----~~~~~------------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~--~~~~~~~ 386 (1088)
. ....+ .+-. ..|..+.|+++|+++++-+. -++++||.+. .++.+..
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 1 11111 1111 25788899999999887654 5899999843 4444443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00066 Score=70.53 Aligned_cols=203 Identities=13% Similarity=0.159 Sum_probs=115.5
Q ss_pred EEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeee------CCcceEEEEecccccccCCCccceeeEEEE
Q 001391 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF------HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~------~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
.-|+|| || +.+||.+. .|+|+|||+.. ..+..+... -...|.++.|.+... +.+.-..+++.
T Consensus 47 Rkl~WS--pD----~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~----s~~ws~ELlvi 115 (282)
T PF15492_consen 47 RKLAWS--PD----CTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKK----SAQWSYELLVI 115 (282)
T ss_pred eEEEEC--CC----CcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeecccc----ccccceeEEEE
Confidence 368999 99 88888888 59999999875 333333321 123588888864321 11111256677
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
.-+|.++=|-+..+. ...| .......+. .+...|.++.++| ..++|++||.... +.+.
T Consensus 116 ~Y~G~L~Sy~vs~gt--~q~y------~e~hsfsf~~~yp~Gi~~~vy~p---~h~LLlVgG~~~~------~~~~---- 174 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGT--NQGY------QENHSFSFSSHYPHGINSAVYHP---KHRLLLVGGCEQN------QDGM---- 174 (282)
T ss_pred eccceeeeEEEEccc--CCcc------eeeEEEEecccCCCceeEEEEcC---CCCEEEEeccCCC------CCcc----
Confidence 677888777765322 1111 112222232 3468999999999 8888888875322 0000
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCe------EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNE------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~------I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
.....+.+.+-++....|....+.+ ..|+. -.+|.+- ..
T Consensus 175 -s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~---------------------------------~~ 219 (282)
T PF15492_consen 175 -SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIP---------------------------------SF 219 (282)
T ss_pred -ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeecc---------------------------------ce
Confidence 0011222333333333343333221 11111 1122211 11
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
+.......-.+.|+.|..||||+.|++...+|.|.+|++..-+.
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 11111223467899999999999999999999999999988544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0053 Score=65.78 Aligned_cols=216 Identities=11% Similarity=0.064 Sum_probs=127.9
Q ss_pred CCeEEEEECCCCeeEEEEeeeCC-cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHG-IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~-~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
+++|..||..+|+.+.+...... .......+. .++ .+++..+++.+..||..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-------~~~----~v~~~~~~~~l~~~d~~tG~------------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-------DGG----RVYVASGDGNLYALDAKTGK------------- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-------ETT----EEEEEETTSEEEEEETTTSE-------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-------eCC----EEEEEcCCCEEEEEECCCCC-------------
Confidence 47899999999999998875221 111211221 232 66666789999999987543
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe-ccCC---c-eeEEEEeeecCCCCCcEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPE---R-CLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~-~~~~---~-~~~~s~~~~~~s~~~~~l 196 (1088)
.+..... .+.+.... .. ++..++++..++.+..+|..+|+.+.+. .... . ....... ..+..+
T Consensus 58 --~~W~~~~-~~~~~~~~-~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-----~~~~~~ 125 (238)
T PF13360_consen 58 --VLWRFDL-PGPISGAP-VV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-----VDGDRL 125 (238)
T ss_dssp --EEEEEEC-SSCGGSGE-EE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-----EETTEE
T ss_pred --EEEEeec-ccccccee-ee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCce-----EecCEE
Confidence 2222211 11111111 22 4556677778899999999999998874 3221 1 0111111 136678
Q ss_pred EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC----------EEEEEEcC
Q 001391 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS----------IFRIEWSS 266 (1088)
Q Consensus 197 ~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~----------V~~v~~sp 266 (1088)
+.+..++.|..+|+. +++.+.....+... +.+-....
T Consensus 126 ~~~~~~g~l~~~d~~---------------------------------tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 126 YVGTSSGKLVALDPK---------------------------------TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp EEEETCSEEEEEETT---------------------------------TTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred EEEeccCcEEEEecC---------------------------------CCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 888889999999998 55555555443311 12222223
Q ss_pred CCCEEEEEECCCc-EEEEEcCCCcccCCCCceeeeceeeeccCcceEE-EEECCCEEEEEeCCCcEEEEcC-CCceeE
Q 001391 267 CGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLTDSFIITAGEDCTCRVWGS-DGKQLK 341 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~-v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~-v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~ 341 (1088)
++ .+..++.++. +.+ |+.+++. +- ... ...+.. ....+..++.++.++.+..||+ +|+.+.
T Consensus 173 ~~-~v~~~~~~g~~~~~-d~~tg~~--------~w--~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 173 DG-RVYVSSGDGRVVAV-DLATGEK--------LW--SKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TT-EEEEECCTSSEEEE-ETTTTEE--------EE--EEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CC-EEEEEcCCCeEEEE-ECCCCCE--------EE--Eec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 44 6777777775 555 9888642 11 111 122333 4445788888889999999999 777654
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0031 Score=73.26 Aligned_cols=262 Identities=10% Similarity=0.039 Sum_probs=144.4
Q ss_pred EEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCC
Q 001391 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (1088)
Q Consensus 37 ~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~ 115 (1088)
.|.++. ++.|.-+|.++|+++.+..... .+.+ +|. ..++ .+++..+++.+.-+|.+++.
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~s---sP~----v~~~----~v~v~~~~g~l~ald~~tG~------- 181 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALS---RPV----VSDG----LVLVHTSNGMLQALNESDGA------- 181 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC--ceec---CCE----EECC----EEEEECCCCEEEEEEccCCC-------
Confidence 444554 7999999999999988877532 1221 111 0233 56666678888888887543
Q ss_pred CccccccceeeeccCCCCcEE-EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc--CCcee----EEEEeeec
Q 001391 116 PETCVNLSLVQSLPRLSHWVF-DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERCL----LYSMKLWG 188 (1088)
Q Consensus 116 ~~~~~~~~~~~~l~~h~~~I~-~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~--~~~~~----~~s~~~~~ 188 (1088)
.+-.+......+. ...-+|.- .+..++.++.++.+...|..+++.+.+... +.... .......
T Consensus 182 --------~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s- 251 (394)
T PRK11138 182 --------VKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT- 251 (394)
T ss_pred --------EeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC-
Confidence 1111111000000 00011110 223466677899999999998877654331 11000 0000000
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
.-..+..++.++.+|.+...|.. +++.+....- +....+ ...+
T Consensus 252 P~v~~~~vy~~~~~g~l~ald~~---------------------------------tG~~~W~~~~--~~~~~~--~~~~ 294 (394)
T PRK11138 252 PVVVGGVVYALAYNGNLVALDLR---------------------------------SGQIVWKREY--GSVNDF--AVDG 294 (394)
T ss_pred cEEECCEEEEEEcCCeEEEEECC---------------------------------CCCEEEeecC--CCccCc--EEEC
Confidence 00124466677788999999987 2322222110 111111 1245
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccC
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~ 347 (1088)
..+..++.++.+...|..+++. +-......+ ....+....+..|+.++.||.+.+.|. +|+.+...+...
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~--------~W~~~~~~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~ 365 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVE--------LWSQSDLLH-RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcE--------EEcccccCC-CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 6777788899999999887632 110011111 112223334788899999999999999 888887765443
Q ss_pred CCCeEE-EEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 348 GRGIWR-CLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 348 ~~~V~~-l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
. .+.+ ..+ .+..|+.++.||.+..+++
T Consensus 366 ~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 366 S-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred C-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 2432 222 2346888899998887754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00055 Score=79.60 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=75.6
Q ss_pred EEEeccCCCCCCCCEEEEEe-----CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECC
Q 001391 23 LCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGE 96 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~-----d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd 96 (1088)
..|+ |. ..++|+++ +|.|.||- .+|++-+-..- ...+.+++|+ |.. .+|+. ++-
T Consensus 21 ~SWH--Ps----ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWH-------pe~----~vLa~gwe~ 80 (1416)
T KOG3617|consen 21 SSWH--PS----EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWH-------PEE----FVLAQGWEM 80 (1416)
T ss_pred cccC--CC----CceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccC-------hHH----HHHhhcccc
Confidence 4566 66 67777765 48899986 66765433321 1235678998 542 44444 457
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
+.+.+|.-... +.......|+..|..+.|+| +|..|+|+..-|.|.+|....
T Consensus 81 g~~~v~~~~~~---------------e~htv~~th~a~i~~l~wS~---~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 81 GVSDVQKTNTT---------------ETHTVVETHPAPIQGLDWSH---DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceeEEEecCCc---------------eeeeeccCCCCCceeEEecC---CCCeEEEcCCCceeEEEEeee
Confidence 89999987742 23334457999999999999 999999999999999998863
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.6e-05 Score=81.83 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=113.1
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
++.|.+..|-+-|++++....-. ..+-+++..|+ ..+.++..|...|.|...|+++...
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~---sksDVfAlQf~---~s~nLv~~GcRngeI~~iDLR~rnq--------------- 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ---SKSDVFALQFA---GSDNLVFNGCRNGEIFVIDLRCRNQ--------------- 286 (425)
T ss_pred ecccccceeEEEEeecccccccc---cchhHHHHHhc---ccCCeeEecccCCcEEEEEeeeccc---------------
Confidence 44556777888888887433211 22334444442 3467999999999999999983210
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~ 309 (1088)
..+.+.+.+. |...|+++.... ++++|++.+.+|.|++||.+.-++ ...+. ...||-.
T Consensus 287 -------------G~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----~~~V~--qYeGHvN 345 (425)
T KOG2695|consen 287 -------------GNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----KKSVM--QYEGHVN 345 (425)
T ss_pred -------------CCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-----cccee--eeecccc
Confidence 1233444443 889999998877 889999999999999999987544 22343 7778865
Q ss_pred ceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC---CCeEEEEEc
Q 001391 310 RVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYD 357 (1088)
Q Consensus 310 ~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~---~~V~~l~~~ 357 (1088)
.-.-+-++ ...+++++.|+..|+|.+ .|..+.++..... .-++++++.
T Consensus 346 ~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 346 LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 44444443 578999999999999999 7888877654321 125566653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0026 Score=68.14 Aligned_cols=209 Identities=13% Similarity=0.088 Sum_probs=125.2
Q ss_pred CCCCceEEecCCCcee---------eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEE
Q 001391 2 GKKDLSEWRLDVGQYL---------GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~---------~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i 71 (1088)
.+|+|..||..+|+.. +...+..+ ++ +..+++++ ++.|..||..+|+.+.++..... +...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~---~~----~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~ 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV---PD----GGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGA 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE---EE----TTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE---Ee----CCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccce
Confidence 3688999999999821 11111123 22 45666664 79999999999999998886332 2222
Q ss_pred EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeee-ccCC---CCcEEEEEEecccCCC
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRL---SHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-l~~h---~~~I~~v~f~p~~~d~ 147 (1088)
... .++ .+++...++.+..+|..++. .+.. .... ..-........ ++
T Consensus 72 ~~~-------~~~----~v~v~~~~~~l~~~d~~tG~---------------~~W~~~~~~~~~~~~~~~~~~~~---~~ 122 (238)
T PF13360_consen 72 PVV-------DGG----RVYVGTSDGSLYALDAKTGK---------------VLWSIYLTSSPPAGVRSSSSPAV---DG 122 (238)
T ss_dssp EEE-------ETT----EEEEEETTSEEEEEETTTSC---------------EEEEEEE-SSCTCSTB--SEEEE---ET
T ss_pred eee-------ccc----ccccccceeeeEecccCCcc---------------eeeeeccccccccccccccCceE---ec
Confidence 121 233 66777788889999877543 2222 1111 01122233333 56
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCce---e-------EEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcccc
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERC---L-------LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~---~-------~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~ 217 (1088)
..++.+..++.|..+|..+|+.+......... . ...+.+ .++ .++.++.++.+..+|..
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~~~~~~g~~~~~d~~------ 191 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI----SDG-RVYVSSGDGRVVAVDLA------ 191 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC----CTT-EEEEECCTSSEEEEETT------
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE----ECC-EEEEEcCCCeEEEEECC------
Confidence 77888888999999999999998776543311 0 111211 234 66667777753333887
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
+++.+.... ...+..+ ..+++..++.++.++.+..||+.+++
T Consensus 192 ---------------------------tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 192 ---------------------------TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ---------------------------TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ---------------------------CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 444333222 2222221 34677888888899999999999974
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1e-05 Score=93.65 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=135.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+....+|++|+ -+ .+.|+.|. .|.|++|++.+|.......+|.. .|.-+..+ .||. ..|.++
T Consensus 1100 ~~~~fTc~afs--~~----~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs-------~dgs---~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFS--GG----TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPS-------VDGS---TQLTSS 1162 (1516)
T ss_pred cccceeeEEee--cC----CceEEeeeccceEEEEEccCcccccccccccc-cccccccc-------CCcc---eeeeec
Confidence 34678999999 55 89999999 79999999999999999999777 69999888 6763 555554
Q ss_pred C--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 95 g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
. .--..+|++... +...+++. .-.++.|+. ..+.-+.|.......+||++++..+.+
T Consensus 1163 s~S~PlsaLW~~~s~--------------~~~~Hsf~----ed~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------GGPRHSFD----EDKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccCchHHHhccccc--------------cCcccccc----ccceeehhh---hHHHHHhcccccceEEEecccCcHHHH
Confidence 4 346889998742 23333333 345788876 444344455556789999999988877
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+..+.....|+-.+..++|...+|.-- | .+||++ ....+++|
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIlnd---G--vLWDvR---------------------------------~~~aIh~F 1263 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLILND---G--VLWDVR---------------------------------IPEAIHRF 1263 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEeeC---c--eeeeec---------------------------------cHHHHhhh
Confidence 655554455555556678888777643 3 689998 34555555
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
...+..+. =.|+|.|..++.-++ |||+++-+.
T Consensus 1264 D~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1264 DQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred hhheeccc-ccccCCCceEEeech-----hhhhHHHHH
Confidence 44332222 258999988887654 799988543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00034 Score=82.33 Aligned_cols=179 Identities=11% Similarity=0.152 Sum_probs=130.2
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++..+..|+-...+..+|+.+.+........... +.-++ .++..+.+|...|+|.+-|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR-----~Nnr~lf~G~t~G~V~LrD~~-------------- 205 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMR-----YNNRNLFCGDTRGTVFLRDPN-------------- 205 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEE-----ecCcEEEeecccceEEeecCC--------------
Confidence 3456777888888899999888776665533322 33444 367899999999999999998
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCcccCCCCc
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
+.+.++++..|.+.|..+.. .|..|++|+. |.-|++||++..+. .
T Consensus 206 -------------------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----l 259 (1118)
T KOG1275|consen 206 -------------------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----L 259 (1118)
T ss_pred -------------------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc-----c
Confidence 78899999999999987655 6889999875 66789999998654 2
Q ss_pred eeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC---CCceeEE--EcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 297 EEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKM--IKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~---~~~~~~~--~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.++. ...+ ..-+.|+ ...++.++..|...+-|. ..-+... +..... .+..++++++++.++.|..
T Consensus 260 ~PI~--~~~~----P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 260 SPIQ--FPYG----PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-GISAFDISSNGDALAFGDH 332 (1118)
T ss_pred CCcc--cccC----chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC-cceeEEecCCCceEEEecc
Confidence 2222 1111 1234444 467888899999999884 2222333 222222 4999999999999999999
Q ss_pred CCCEEEEEc
Q 001391 369 DSAIKVHQF 377 (1088)
Q Consensus 369 Dg~I~iwd~ 377 (1088)
+|.|.+|.-
T Consensus 333 ~g~v~~wa~ 341 (1118)
T KOG1275|consen 333 EGHVNLWAD 341 (1118)
T ss_pred cCcEeeecC
Confidence 999999974
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0066 Score=65.28 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=126.2
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCc-EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-----cCCeEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-----IYNEII 206 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~-V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-----~dg~I~ 206 (1088)
.+-..++.+| .....++.+-.-|+ ..+||..+++....+..+..-..|.-.. +++||.+|++.- ..|.|-
T Consensus 5 ~RgH~~a~~p--~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 5 ARGHGVAAHP--TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred ccccceeeCC--CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEE--EcCCCCEEEEeccccCCCcEEEE
Confidence 3445678888 23456677766665 6789999999998888776655554332 268999998854 358899
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-------CCc
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-------DRS 279 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-------Dg~ 279 (1088)
|||.. ...+.+.++..|.-....+.+.|||+.|+.+-. .|.
T Consensus 81 Vyd~~--------------------------------~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 81 VYDAA--------------------------------RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR 128 (305)
T ss_pred EEECc--------------------------------CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc
Confidence 99987 146677888888877888999999988776532 122
Q ss_pred EEEEEcCCCccc----CCCCceeeeceee--eccCcceEEEEEC-CCEEEEEeCC-C-------cEEEEcCCCceeEEEc
Q 001391 280 ARIWEVRAEYWK----DSDSIEEVGSSVL--YGHNARVWDCCLT-DSFIITAGED-C-------TCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 280 v~iWd~~~~~~~----~~~~~~~i~~~~~--~~h~~~I~~v~~~-~~~l~sg~~D-g-------~i~vWd~~~~~~~~~~ 344 (1088)
.++ |+.+.+.. ...+.+.+....+ .-|...|..+++. ...++.|... | .+.+++.. +.+..+.
T Consensus 129 ~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~ 206 (305)
T PF07433_consen 129 AKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG-GALRLLP 206 (305)
T ss_pred eec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC-Ccceecc
Confidence 222 22211110 0111233332234 3366678777776 3333333321 1 13333321 1122221
Q ss_pred -------ccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEcCC
Q 001391 345 -------EHIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 345 -------~h~~~~V~~l~~~~dg~~l-~tg~~Dg~I~iwd~~~ 379 (1088)
...+ .|-+|++++++.++ +|+-.-+.+.+||..+
T Consensus 207 ~p~~~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 207 APEEQWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred CChHHHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 1223 48899999999866 5555788999999854
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0031 Score=72.94 Aligned_cols=211 Identities=12% Similarity=0.140 Sum_probs=120.8
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
|...|.--++.. .+++++.|+.-|.+.+|+-..++....-............+ +++..++|+|+..|.|.++-+
T Consensus 32 ~~~~v~lTc~ds---t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v---s~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 32 FPARVKLTCVDA---TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV---SSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred CcceEEEEEeec---CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe---cchhHhhhhhcCCceEEeehh
Confidence 334454445555 88999999999999999987765543322222222222333 567789999999999999988
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
.. +..+ ....+..+ +.|...|++++|++++..+.+|...|.|.+-.++...
T Consensus 106 ~~-~~p~---------------------------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~ 157 (726)
T KOG3621|consen 106 NK-ELPR---------------------------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ 157 (726)
T ss_pred hc-cCCC---------------------------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhh
Confidence 72 1111 11111111 2378999999999999999999999999998887731
Q ss_pred ccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCC--eEEEEEcCC----C-CE
Q 001391 290 WKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRG--IWRCLYDSL----S-SL 362 (1088)
Q Consensus 290 ~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~--V~~l~~~~d----g-~~ 362 (1088)
. -......+..-...|.-+.+...+|+.+.--. ..+++.+.+.++++.....++ -...+|-|. . .+
T Consensus 158 ~------~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~ 230 (726)
T KOG3621|consen 158 A------FLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQ 230 (726)
T ss_pred h------hccccceeeccCcceEEeecccceehHhhhhh-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCce
Confidence 1 00110133444566777777655554444332 234455333233332111111 234455443 2 24
Q ss_pred EEEEeCCCCEEEEEc--CCCCCCc
Q 001391 363 LVTAGFDSAIKVHQF--QAFLPGS 384 (1088)
Q Consensus 363 l~tg~~Dg~I~iwd~--~~~~~~~ 384 (1088)
|+++ +-| .|+|.. .+..+++
T Consensus 231 Iyca-RPG-~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 231 IYCA-RPG-LRLWEADFAGEVIKT 252 (726)
T ss_pred EEEe-cCC-CceEEeecceeEEEe
Confidence 4444 433 577765 4444433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.062 Score=57.86 Aligned_cols=211 Identities=13% Similarity=0.035 Sum_probs=121.6
Q ss_pred eEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe-cccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 89 FEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL-KVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 89 ~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~-p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.++.+- ..+.|..|+..... .....+.+ ...+++. + ++. |+.+..+ .+.++|..+
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~--------------~~~~~~~~----~~G~~~~~~---~g~-l~v~~~~-~~~~~d~~~ 69 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGE--------------VEVIDLPG----PNGMAFDRP---DGR-LYVADSG-GIAVVDPDT 69 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------------EEEEESSS----EEEEEEECT---TSE-EEEEETT-CEEEEETTT
T ss_pred EEEEEEcCCCEEEEEECCCCe--------------EEEEecCC----CceEEEEcc---CCE-EEEEEcC-ceEEEecCC
Confidence 444444 37888888877432 11122222 7788888 5 544 5555544 456669988
Q ss_pred CceEEEecc---C-CceeEEEEeeecCCCCCcEEEEEecC--------CeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 167 SSIILEVHS---P-ERCLLYSMKLWGDNLEALRIASGTIY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 167 ~~~~~~~~~---~-~~~~~~s~~~~~~s~~~~~l~sg~~d--------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
++....... . .......+++ +++|.+.++.... |.|..++..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~v---d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----------------------- 123 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAV---DPDGNLYVTDSGGGGASGIDPGSVYRIDPD----------------------- 123 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE----TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------------------
T ss_pred CcEEEEeeccCCCcccCCCceEEE---cCCCCEEEEecCCCccccccccceEEECCC-----------------------
Confidence 865433332 1 2333444444 5667655554332 334444432
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCcccCCCCceeeece-eeeccCcceE
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVW 312 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~-~~~~h~~~I~ 312 (1088)
++ +..+...-...+.|+|+|+++.|+ +-+..+.|..+++...... ......+ .+..-....-
T Consensus 124 -----------~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 124 -----------GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE----LSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp -----------SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC----EEEEEEEEE-SSSSCEEE
T ss_pred -----------Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc----eeeeeeEEEcCCCCcCCC
Confidence 11 222223345678999999998765 6677888888888643210 0111100 1222223477
Q ss_pred EEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEc-CCCCEEEE
Q 001391 313 DCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVT 365 (1088)
Q Consensus 313 ~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~-~dg~~l~t 365 (1088)
.+++. +++.++....+.|.+++.+|+.+..+..... .+++++|. ++.+.|+.
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~-~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVP-RPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSS-SEEEEEEESTTSSEEEE
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCC-CEEEEEEECCCCCEEEE
Confidence 78887 6677777788999999999999988876644 59999994 66554443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00048 Score=74.94 Aligned_cols=238 Identities=15% Similarity=0.098 Sum_probs=155.0
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~ 167 (1088)
..+.++-|+.++.|.-..-. -.+.+..+..|...|.+++.+- ++.++.|++. |..++++|+++-
T Consensus 22 fiiqASlDGh~KFWkKs~is------------GvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRIS------------GVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred eEEeeecchhhhhcCCCCcc------------ceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEEEeecc
Confidence 66666779999999866311 1567788889999999999998 9999999777 999999999876
Q ss_pred ceEEEecc---CCc-eeEEEEeeecCCCCC-cEEEE-EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 168 SIILEVHS---PER-CLLYSMKLWGDNLEA-LRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 168 ~~~~~~~~---~~~-~~~~s~~~~~~s~~~-~~l~s-g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
..+..++. |.. +..++ ..+. ..|+. .-.++.|.++|-..
T Consensus 87 DminmiKL~~lPg~a~wv~s------kGd~~s~IAVs~~~sg~i~VvD~~~----------------------------- 131 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTS------KGDKISLIAVSLFKSGKIFVVDGFG----------------------------- 131 (558)
T ss_pred chhhhcccccCCCceEEecC------CCCeeeeEEeecccCCCcEEECCcC-----------------------------
Confidence 65533331 111 11111 1111 23333 34568888988760
Q ss_pred cccce-eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-cccCC-CCc---eeeeceeeeccCcceEEEE
Q 001391 242 QQHTA-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDS-DSI---EEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 242 ~~~~~-~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~-~~~~~-~~~---~~i~~~~~~~h~~~I~~v~ 315 (1088)
.. +....-.-|..+|..+.+.|-+..++|....|.|.-|..... +.... ... .....+..........++.
T Consensus 132 ---d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 132 ---DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE 208 (558)
T ss_pred ---CcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceE
Confidence 22 233333469999999999999999999999999999998741 11000 000 0000011222334567888
Q ss_pred EC--CCEEEEEeCCCcEEEEcC-CCceeEEEc--------------------------------ccCCCCeEEEEEcCCC
Q 001391 316 LT--DSFIITAGEDCTCRVWGS-DGKQLKMIK--------------------------------EHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 316 ~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~--------------------------------~h~~~~V~~l~~~~dg 360 (1088)
|+ +..+.+-+.|..||++.. +|+.++.+. .|....-+.+.|...+
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~ 288 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG 288 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC
Confidence 87 678888899999999998 554333221 1222233466788888
Q ss_pred CEEEEEeCCCCEEEEEcCCC
Q 001391 361 SLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
++|+-|+-=| |++.++.+.
T Consensus 289 ~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 289 NFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred CEEEeeccee-EEEEEeecC
Confidence 8888777655 788888543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.028 Score=60.59 Aligned_cols=207 Identities=10% Similarity=0.131 Sum_probs=120.5
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceE--EEEecccccccCCCccceeeEEEEEC
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH--GISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~--~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
..+++.+ |+ ....++.+- +....+||+.+|+.+..+....+ +-+ .-.|| +||+ .++++-.
T Consensus 7 gH~~a~~--p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs-------~dG~---~LytTEn 70 (305)
T PF07433_consen 7 GHGVAAH--PT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFS-------PDGR---LLYTTEN 70 (305)
T ss_pred ccceeeC--CC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEc-------CCCC---EEEEecc
Confidence 4567788 85 245555565 57999999999999988876443 221 34678 8883 4444422
Q ss_pred -----CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc---------------
Q 001391 96 -----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--------------- 155 (1088)
Q Consensus 96 -----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~--------------- 155 (1088)
.+.|-|||... . .+.+..+..|-=.-..+.+.| |++.|+++-.
T Consensus 71 d~~~g~G~IgVyd~~~-~-------------~~ri~E~~s~GIGPHel~l~p---DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 71 DYETGRGVIGVYDAAR-G-------------YRRIGEFPSHGIGPHELLLMP---DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred ccCCCcEEEEEEECcC-C-------------cEEEeEecCCCcChhhEEEcC---CCCEEEEEcCCCccCcccCceecCh
Confidence 47899999983 2 567777777776677888999 9987777521
Q ss_pred ---CCcEEEEEcCCCceEEEeccCCce---eEEEEeeecCCCCCcEEEEEecCCe-------EEEEEeccCccccCCCCC
Q 001391 156 ---DNSIRVWDISNSSIILEVHSPERC---LLYSMKLWGDNLEALRIASGTIYNE-------IIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 156 ---Dg~V~iWd~~~~~~~~~~~~~~~~---~~~s~~~~~~s~~~~~l~sg~~dg~-------I~vwd~~~~~~~~~~~~~ 222 (1088)
+..+.+-|..+|+.+.+...+..- .+-.+++ ..++..++..-..|. |-+++..
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~---~~~G~V~~a~Q~qg~~~~~~PLva~~~~g----------- 199 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV---DGDGTVAFAMQYQGDPGDAPPLVALHRRG----------- 199 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEe---cCCCcEEEEEecCCCCCccCCeEEEEcCC-----------
Confidence 224555666777766654432211 1222222 233333332211111 1111110
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCcc
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~ 290 (1088)
..++..... ... ...-.+-|-+|++++++..+ +|+-.-+.+.+||..+++.
T Consensus 200 ------------~~~~~~~~p--~~~---~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 200 ------------GALRLLPAP--EEQ---WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred ------------CcceeccCC--hHH---HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 001110000 000 11234678899999999877 5555678999999999754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=76.13 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=100.6
Q ss_pred CCCceEEecCCCc-----eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-----eeEEEEeeeCCcceEEE
Q 001391 3 KKDLSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-----TLIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 3 d~~i~iWdl~~g~-----~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-----~~~~~~~~~~~~~V~~i 71 (1088)
+..|-+=|+++|+ -.++|.++.|. - ++.+|.+|. .|.|.++|+..+ .+.+.+ .++..|.++
T Consensus 233 sqqv~L~nvetg~~qsf~sksDVfAlQf~--~----s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtsl 304 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQQSFQSKSDVFALQFA--G----SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSL 304 (425)
T ss_pred cceeEEEEeecccccccccchhHHHHHhc--c----cCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhh
Confidence 4446677888887 24789999998 4 379999999 799999999764 233333 234468888
Q ss_pred EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
+.... +++ .++++.-++.|++||+..-. ..+-+..+.||-..-.-+-++- ++....++
T Consensus 305 q~Lq~------s~q---~LmaS~M~gkikLyD~R~~K------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~ 362 (425)
T KOG2695|consen 305 QILQF------SQQ---KLMASDMTGKIKLYDLRATK------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIF 362 (425)
T ss_pred hhhcc------ccc---eEeeccCcCceeEeeehhhh------------cccceeeeeccccccccccccc-ccccceEE
Confidence 87631 331 44444559999999998422 1334788888865433333332 11556788
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
++|.|...|||.+..+..+.++..+.
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EccCeeEEEEEecccCceeeccCCCC
Confidence 89999999999999999988876543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.11 Score=53.26 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
..+++.|+-.+.+.--|..+|....+.....+-....+. -++.++.|...|.+++-+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v------vgdfVV~GCy~g~lYfl~~~--------------- 81 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV------VGDFVVLGCYSGGLYFLCVK--------------- 81 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE------ECCEEEEEEccCcEEEEEec---------------
Confidence 357788888888888999998887665443332221221 25679999999999999998
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
++.....+..-+.-=......+++..+..++.|++...-|..+..+
T Consensus 82 ------------------tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 82 ------------------TGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred ------------------chhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence 5555555543322223345678999999999999999999888543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.14 Score=59.11 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=62.5
Q ss_pred ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEE
Q 001391 576 SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655 (1088)
Q Consensus 576 ~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l 655 (1088)
.......|.|.+++|+.+.|+.|+.||+|.+||..++.. ..... . -..+.++|. +++..+
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---------~~~ka-~-------~~P~~iaWH---p~gai~ 314 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---------LLAKA-E-------FIPTLIAWH---PDGAIF 314 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---------eeeee-c-------ccceEEEEc---CCCcEE
Confidence 346778899999999999999999999999999876421 11101 0 247889999 678889
Q ss_pred EEecCCCeEEEEEeecCCcc
Q 001391 656 RSTGGDGCICYLEYDKDRES 675 (1088)
Q Consensus 656 ~t~g~Dg~i~iw~~~~~~~~ 675 (1088)
+.++.-|.+.+||+-.+...
T Consensus 315 ~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCceEEEEEeecCccc
Confidence 99999999999998765443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0023 Score=74.93 Aligned_cols=187 Identities=9% Similarity=0.071 Sum_probs=114.6
Q ss_pred CcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCccc
Q 001391 308 NARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (1088)
Q Consensus 308 ~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~ 386 (1088)
...+.|+++++.+++.|..+|.+++.+..+.+ .+...|.. . ..+|.++++|+.||+|.|-.+-+ ....
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~--~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~--- 107 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSS--S-----ILEGEYVASCSDDGKVVIGSLFTDDEIT--- 107 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-cccccccc--c-----ccCCceEEEecCCCcEEEeeccCCccce---
Confidence 34678888999999999999999999998877 55555654 1 67899999999999999988732 1111
Q ss_pred CCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC------CeEEEEecCCeEEEEEeccCC-cceeEEee
Q 001391 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE------DTLYIATNHGYLYHTKLCDMD-SVNWNKIL 459 (1088)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------~~ll~~t~~g~i~~~~~~~~~-~~~~~~~~ 459 (1088)
.++. ..++.++++.|+ +++++++..| ++.. ..+ -+.|..+.
T Consensus 108 -------------~~df---------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~---er~wlgnk~~v~ 155 (846)
T KOG2066|consen 108 -------------QYDF---------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS---ERNWLGNKDSVV 155 (846)
T ss_pred -------------eEec---------------CCcceeEEeccchhhhhhhheeecCcce-EEEe---hhhhhcCcccee
Confidence 1111 136788888886 3677777777 5532 211 11222332
Q ss_pred eecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEE
Q 001391 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (1088)
Q Consensus 460 ~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~ 539 (1088)
-....++|.++.+. +++||-++. -.|++||....+....+.... ...... ..-...++.++ ..|+
T Consensus 156 l~~~eG~I~~i~W~----------g~lIAWand-~Gv~vyd~~~~~~l~~i~~p~--~~~R~e-~fpphl~W~~~-~~LV 220 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR----------GNLIAWAND-DGVKVYDTPTRQRLTNIPPPS--QSVRPE-LFPPHLHWQDE-DRLV 220 (846)
T ss_pred eecCccceEEEEec----------CcEEEEecC-CCcEEEeccccceeeccCCCC--CCCCcc-cCCCceEecCC-CeEE
Confidence 33345678777652 356666664 468999998765433222211 000000 11111234444 4444
Q ss_pred EECCCCeEEEEecC
Q 001391 540 TADPKGRLKLWQLC 553 (1088)
Q Consensus 540 s~~~dg~i~vwd~~ 553 (1088)
.| ...+|++..+.
T Consensus 221 IG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 221 IG-WGDSVKICSIK 233 (846)
T ss_pred Ee-cCCeEEEEEEe
Confidence 44 56678998887
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.1 Score=56.25 Aligned_cols=217 Identities=9% Similarity=0.068 Sum_probs=125.6
Q ss_pred EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEE
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~ 100 (1088)
++.|. +. .+.++.+.. ++.|..||..+++... +.. . ...++++.. +++ .++++.. +.+.
T Consensus 4 gp~~d--~~---~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~--~~~G~~~~~------~~g----~l~v~~~-~~~~ 63 (246)
T PF08450_consen 4 GPVWD--PR---DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-P--GPNGMAFDR------PDG----RLYVADS-GGIA 63 (246)
T ss_dssp EEEEE--TT---TTEEEEEETTTTEEEEEETTTTEEEE-EES-S--SEEEEEEEC------TTS----EEEEEET-TCEE
T ss_pred ceEEE--CC---CCEEEEEEcCCCEEEEEECCCCeEEE-Eec-C--CCceEEEEc------cCC----EEEEEEc-CceE
Confidence 45666 63 156666654 6999999998876532 332 2 267777762 344 4555554 5555
Q ss_pred EEEeccCCCCCCCCCCccccccceeeecc--C-CCCcEEEEEEecccCCCCEEEEEEcC--------CcEEEEEcCCCce
Q 001391 101 LFELNFELSPNSQYQPETCVNLSLVQSLP--R-LSHWVFDVCFLKVCNGNRSLAIGCSD--------NSIRVWDISNSSI 169 (1088)
Q Consensus 101 iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~-h~~~I~~v~f~p~~~d~~~lasgs~D--------g~V~iWd~~~~~~ 169 (1088)
++|+.... .+.+.... . .....+++++.| +|.+.++-... |.|..++.. ++.
T Consensus 64 ~~d~~~g~-------------~~~~~~~~~~~~~~~~~ND~~vd~---~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 64 VVDPDTGK-------------VTVLADLPDGGVPFNRPNDVAVDP---DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EEETTTTE-------------EEEEEEEETTCSCTEEEEEEEE-T---TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EEecCCCc-------------EEEEeeccCCCcccCCCceEEEcC---CCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 55876543 33344432 2 346789999999 99977665433 446666666 443
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
...... ......+++ ++++..|+ +-+..+.|..+++....... ...+.
T Consensus 127 ~~~~~~--~~~pNGi~~---s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--------------------------~~~~~ 175 (246)
T PF08450_consen 127 TVVADG--LGFPNGIAF---SPDGKTLYVADSFNGRIWRFDLDADGGEL--------------------------SNRRV 175 (246)
T ss_dssp EEEEEE--ESSEEEEEE---ETTSSEEEEEETTTTEEEEEEEETTTCCE--------------------------EEEEE
T ss_pred EEEecC--cccccceEE---CCcchheeecccccceeEEEeccccccce--------------------------eeeee
Confidence 222221 111223333 46776554 66778888888886111000 01223
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~ 317 (1088)
+..+..-.+..-.+++..+|...++....+.|.+++.+. + .+. ...-....+++++|.
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G-~--------~~~--~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG-K--------LLR--EIELPVPRPTNCAFG 233 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS-C--------EEE--EEE-SSSSEEEEEEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc-c--------EEE--EEcCCCCCEEEEEEE
Confidence 333444445588999999999988888889999999873 2 222 222223478999995
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.17 Score=58.44 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=80.5
Q ss_pred CCCCEEEEEEcCC-CCEEEE----EECCCcE----EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE
Q 001391 255 HEGSIFRIEWSSC-GSKLVS----VSDDRSA----RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 255 h~~~V~~v~~sp~-g~~l~s----~s~Dg~v----~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
-+....++.|+-. ...+.| .+.+|.+ .+|+....+. +.+. .+....+..|.+++++ ...++.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvs-vtsipL~s~v~~ca~sp~E~kLvl 276 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVS-VTSIPLPSQVICCARSPSEDKLVL 276 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEE-EEEEecCCcceEEecCcccceEEE
Confidence 3445577778753 333433 2334433 4566655433 4444 3556778889999998 589999
Q ss_pred EeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 324 AGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
|+.||+|.+||...+..... ...- ..+.++|+|+|..+++|+.-|.+.+||+.
T Consensus 277 GC~DgSiiLyD~~~~~t~~~-ka~~-~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGVTLLA-KAEF-IPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCCeEEEEEcCCCeeeee-eecc-cceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 99999999999844333322 2233 46789999999999999999999999984
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.13 Score=57.93 Aligned_cols=185 Identities=11% Similarity=0.114 Sum_probs=120.3
Q ss_pred CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC----CcEEEEEec---------C-CeEEEEEeccCccccCCCCC
Q 001391 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE----ALRIASGTI---------Y-NEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 157 g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~----~~~l~sg~~---------d-g~I~vwd~~~~~~~~~~~~~ 222 (1088)
..|++.|..+.+.+.++.-+....+.+++.+....+ ..+|+.|+. . |.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---~~---- 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---PE---- 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc---cc----
Confidence 358999999998888877777777788777765542 567887764 2 88999998821 00
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
....-+.+.. ...+++|++++-- +.+++.+.. +.|.+|++...+. ... .
T Consensus 75 -------------------~~~~l~~i~~-~~~~g~V~ai~~~--~~~lv~~~g-~~l~v~~l~~~~~-------l~~-~ 123 (321)
T PF03178_consen 75 -------------------NNFKLKLIHS-TEVKGPVTAICSF--NGRLVVAVG-NKLYVYDLDNSKT-------LLK-K 123 (321)
T ss_dssp ----------------------EEEEEEE-EEESS-EEEEEEE--TTEEEEEET-TEEEEEEEETTSS-------EEE-E
T ss_pred -------------------cceEEEEEEE-EeecCcceEhhhh--CCEEEEeec-CEEEEEEccCccc-------chh-h
Confidence 0001122222 2357889998876 334555444 6899999988641 222 1
Q ss_pred eeeccCcceEEEEECCCEEEEEeCCCcEEEEcC--CCceeEEEc-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~--~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
........+.++...+++++.|.....+.++.. .++.+..+. ......++++.+.++++.++.+..+|.+.++....
T Consensus 124 ~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 124 AFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred heecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 333344478888888889999998888887755 455444433 22233588888886667999999999999998853
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.03 Score=65.13 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=86.0
Q ss_pred eeeEEEEEeccCCCCCCCCE-EEE-Ee---CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 18 GEISALCFVHLPSHLSSLPF-LLA-GS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~-laa-g~---d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
+.+..-.|+ || ++. ++. .. ...|.++|+.+|+...... ..+ ......|+ |||+ .++.
T Consensus 188 ~~~~~p~wS--pD----G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g-~~~~~~~S-------PDG~---~la~ 249 (419)
T PRK04043 188 GLNIFPKWA--NK----EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG-MLVVSDVS-------KDGS---KLLL 249 (419)
T ss_pred CCeEeEEEC--CC----CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-cEEeeEEC-------CCCC---EEEE
Confidence 356678999 99 653 443 22 2789999999886544333 333 35667788 8884 4443
Q ss_pred EEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CC--cEEEEEcCC
Q 001391 93 LFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISN 166 (1088)
Q Consensus 93 ~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg--~V~iWd~~~ 166 (1088)
+.. +..|.++++.... .+.+. .+........|+| ||+.|+-.+. .+ .|.+.|+.+
T Consensus 250 ~~~~~g~~~Iy~~dl~~g~-------------~~~LT---~~~~~d~~p~~SP---DG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 250 TMAPKGQPDIYLYDTNTKT-------------LTQIT---NYPGIDVNGNFVE---DDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEccCCCcEEEEEECCCCc-------------EEEcc---cCCCccCccEECC---CCCEEEEEECCCCCceEEEEECCC
Confidence 332 3456666665322 22222 2222233457999 9987766553 23 577788877
Q ss_pred CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC---------CeEEEEEec
Q 001391 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVD 211 (1088)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---------g~I~vwd~~ 211 (1088)
++.......... ...+ +|++..|+..... ..|.+.|+.
T Consensus 311 g~~~rlt~~g~~----~~~~---SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 311 GSVEQVVFHGKN----NSSV---STYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CCeEeCccCCCc----CceE---CCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 765333222211 1122 6888877765433 246666665
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0034 Score=74.36 Aligned_cols=183 Identities=13% Similarity=0.106 Sum_probs=124.8
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.++..|-...+..+|..++++.+......+ .|.-|+-. + +.+.++ ..|+|.+-|.+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~N---------n----r~lf~G~t~G~V~LrD~~s-------- 206 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRYN---------N----RNLFCGDTRGTVFLRDPNS-------- 206 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCC-ceEEEEec---------C----cEEEeecccceEEeecCCc--------
Confidence 444444467888899999998888887554 46666543 2 333333 379999999874
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc---------CCcEEEEEcCCCceEEEeccCCceeEEEEe
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~---------Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~ 185 (1088)
++.++++..|++.|.++.. .|++|+++|. |..|+|||++.-+.+.-+.-+.... -++
T Consensus 207 -------~~~iht~~aHs~siSDfDv-----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~--flr 272 (1118)
T KOG1275|consen 207 -------FETIHTFDAHSGSISDFDV-----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ--FLR 272 (1118)
T ss_pred -------Cceeeeeeccccceeeeec-----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch--hhh
Confidence 7789999999999999887 6788888874 7779999998877665444333221 123
Q ss_pred eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc
Q 001391 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s 265 (1088)
|++. -...++..+..|...+-|..+-. . ....+..+..-...+.++.++
T Consensus 273 f~Ps--l~t~~~V~S~sGq~q~vd~~~ls---------------------------N--P~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 273 FHPS--LTTRLAVTSQSGQFQFVDTATLS---------------------------N--PPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hccc--ccceEEEEecccceeeccccccC---------------------------C--CccceeEEccCCCcceeEEec
Confidence 3221 13466777778888888843100 0 111122222333459999999
Q ss_pred CCCCEEEEEECCCcEEEEEc
Q 001391 266 SCGSKLVSVSDDRSARIWEV 285 (1088)
Q Consensus 266 p~g~~l~s~s~Dg~v~iWd~ 285 (1088)
++++.++.+..+|.|.+|.-
T Consensus 322 sn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCCceEEEecccCcEeeecC
Confidence 99999999999999999983
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.003 Score=74.02 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=124.1
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
.+.+.|++++ ++.++-|.-+|.|++.+..... .+...+... ..+|.++++++.||.|.|-.+.
T Consensus 39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhh-----cceeeeccccceEEEEecCCcc--ccccccccc----------ccCCceEEEecCCCcEEEeecc
Confidence 4678888885 4789999999999999875432 221111111 3579999999999999998877
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-----CCEEEEEECCCcEEEEEcC
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----GSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-----g~~l~s~s~Dg~v~iWd~~ 286 (1088)
+......+. ...++.+|+++|+ .+.+++|+.-| +.++.-+
T Consensus 102 ---------------------------------~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 102 ---------------------------------TDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred ---------------------------------CCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 233332222 3467899999998 46799999988 7776532
Q ss_pred CCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCC-----CeEEEEEcCCC
Q 001391 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLS 360 (1088)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~-----~V~~l~~~~dg 360 (1088)
=-. ......+..-.++|.++.|.+++++=++.+| ++|||. .++.+..+...... --..+.|.++.
T Consensus 147 wlg--------nk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 147 WLG--------NKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED 217 (846)
T ss_pred hhc--------CccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC
Confidence 211 1111245556789999999999999998777 899999 66666655443321 12356666654
Q ss_pred CEEEEEeCCCCEEEEEcC
Q 001391 361 SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|+.|= --+|+|..++
T Consensus 218 -~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 218 -RLVIGW-GDSVKICSIK 233 (846)
T ss_pred -eEEEec-CCeEEEEEEe
Confidence 455544 4478888885
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.038 Score=64.35 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=90.0
Q ss_pred eEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCC
Q 001391 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESH 388 (1088)
Q Consensus 311 I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~ 388 (1088)
.+|+...+.+++.|+.-|.+++|+..+.....++. -.+ .+..+.++++..++|.|+..|.|.++.++......
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~---- 112 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD---- 112 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccc-eEEEEEecchhHhhhhhcCCceEEeehhhccCCCc----
Confidence 35555568999999999999999995544444333 333 45667788888899999999999999885421110
Q ss_pred ccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcce
Q 001391 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPI 467 (1088)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i 467 (1088)
.++.. ..-..|...|++++|++++ +++.+-..|.+....+............-...+.+|
T Consensus 113 ----------~~~~t---------~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 113 ----------LDYVT---------PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred ----------ceeec---------cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 01100 0011256689999999998 778888889988766654111111111112235677
Q ss_pred EEEecCCC
Q 001391 468 ICMDLLSN 475 (1088)
Q Consensus 468 ~~l~~~~~ 475 (1088)
.-+|...+
T Consensus 174 VQlD~~q~ 181 (726)
T KOG3621|consen 174 VQLDYLQS 181 (726)
T ss_pred EEeecccc
Confidence 77777554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.019 Score=62.18 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=80.9
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCE
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSF 320 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~ 320 (1088)
+.+...-+.+|...|..++|+|..+ .+..++.+..|+|.|+.+.. .+. ....| ..+|+++|. .++
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------~vs--sy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------VVS--SYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--------eee--heecc-CCceeeeeccCCcce
Confidence 3344556678889999999999876 68889999999999999853 222 33444 789999998 478
Q ss_pred EEEEeCCCcEEEEcC--CCceeEEEcc-cCCCCeEEEEEc------CCCCEEEEEeCCCCEEEEEc
Q 001391 321 IITAGEDCTCRVWGS--DGKQLKMIKE-HIGRGIWRCLYD------SLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~--~~~~~~~~~~-h~~~~V~~l~~~------~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|+.|-.+|.|.|||+ ...++..+.+ -...+|-.++.- +.+.+|+....+ +..|++
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei 314 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEI 314 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhh
Confidence 999999999999999 2333333322 111245555432 234445444433 556666
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.074 Score=65.68 Aligned_cols=216 Identities=14% Similarity=0.165 Sum_probs=119.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
+.|.++.|. -+ ..-++.+. +|.|.+-|.++... .+-+.-..+|.+++|| ||.. .++.+.++
T Consensus 69 ~~i~s~~fl--~d----~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS-------~Dee---~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFL--AD----TNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWS-------PDEE---LLALITGR 130 (1265)
T ss_pred cceEEEEEe--cc----cceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeec-------CCCc---EEEEEeCC
Confidence 568888888 54 34444444 68888889887643 2222233479999999 7762 45555667
Q ss_pred CEEEEEEeccCCCCC----------CCCCC------ccccc--------cceeeecc--C---CCCcEEEEEEecccCCC
Q 001391 97 KRVKLFELNFELSPN----------SQYQP------ETCVN--------LSLVQSLP--R---LSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~----------~~~~~------~~~~~--------~~~~~~l~--~---h~~~I~~v~f~p~~~d~ 147 (1088)
+++.+-+-....... +++.. ....+ .+.+...+ + -.+.=.+|.|-- ||
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg---Dg 207 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG---DG 207 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc---CC
Confidence 777665432111000 00000 00000 00000000 0 112234588877 99
Q ss_pred CEEEEEE----cC-CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE---ecCCeEEEEEeccCccccCC
Q 001391 148 RSLAIGC----SD-NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 148 ~~lasgs----~D-g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg---~~dg~I~vwd~~~~~~~~~~ 219 (1088)
+++|+.. .+ +.|++||-+ +..- ....+....-.++.+ -|.|.++++- +.|+.|.++.-+..+
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Ln-s~se~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~IvffErNGL~----- 277 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALN-STSEPVEGLQHSLSW---KPSGSLIAAIQCKTSDSDIVFFERNGLR----- 277 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhh-cccCcccccccceee---cCCCCeEeeeeecCCCCcEEEEecCCcc-----
Confidence 9988832 24 789999987 4332 222222222223333 3678888874 345678888765100
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE---EECCCcEEEEEcCCCc
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS---VSDDRSARIWEVRAEY 289 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s---~s~Dg~v~iWd~~~~~ 289 (1088)
.+.....+......|..++|+.++..|+. ......|++|-+.+..
T Consensus 278 -------------------------hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 -------------------------HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred -------------------------ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 12222223333445899999999999887 4455559999998853
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0081 Score=70.33 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=75.9
Q ss_pred EEEcCCCCEEEEEE----CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC
Q 001391 262 IEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 262 v~~sp~g~~l~s~s----~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~ 335 (1088)
..|+|...+++.++ ..|+|.||--... . .+- -..+-.+++++|++ -.|+.|-+-|.+.+|..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGE-P-----qr~------Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGE-P-----QRD------VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCC-C-----Ccc------cccceehhhhccChHHHHHhhccccceeEEEec
Confidence 46788888777665 3577888753321 1 111 11223456799995 46788889999999999
Q ss_pred CCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 336 DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 336 ~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..+...+ ...|.. +|..+.|+++|..++|+..-|.+.+|...
T Consensus 89 ~~~e~htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETHTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeeeeccCCCC-CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5555554 456776 79999999999999999999999999885
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.3 Score=55.99 Aligned_cols=287 Identities=14% Similarity=0.134 Sum_probs=135.6
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
.|+.+.|. ++ ..-|++|. .|.|.||-+...+--. .....+-..+.+.+.... +.
T Consensus 3 ~v~~vs~a--~~----t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~~~~~----------------~~ 57 (395)
T PF08596_consen 3 SVTHVSFA--PE----TLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFRRFSLN----------------NS 57 (395)
T ss_dssp -EEEEEEE--TT----TTEEEEEETTS-EEEEEEEE---------------------S--GG----------------GS
T ss_pred eEEEEEec--CC----CceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCccccccccc----------------CC
Confidence 58899999 87 56777777 6999999886533221 001101112222211111 12
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP- 176 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~- 176 (1088)
.-.|-|+.....+. ..--+.+..-+....+.|++++.+ |-.++|.|..+|.+.|.|++....+.+-.-.
T Consensus 58 ~~~l~di~~r~~~~------~~~gf~P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 58 PGKLTDISDRAPPS------LKEGFLPLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp S-SEEE-GGG--TT-------SEEEEEEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred CcceEEehhhCCcc------cccccCchhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 23345554322111 000134444555568999999997 5678999999999999999888777663211
Q ss_pred ------Cc----eeEEEEeeec-CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 177 ------ER----CLLYSMKLWG-DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 177 ------~~----~~~~s~~~~~-~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
.. ++-|++.-.. +.....++++|+..|.+.+|++. +... + ...
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl-----p~~~--------------g-------~f~ 181 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL-----PSSN--------------G-------RFS 181 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE-----E-GG--------------G--------EE
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe-----cCCC--------------C-------ceE
Confidence 12 2333322222 22234689999999999999886 1000 0 001
Q ss_pred eeeeEEEeCCCCCEEEEE-EcCC-----------------C---CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 246 AVNLFRLVGHEGSIFRIE-WSSC-----------------G---SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~-~sp~-----------------g---~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
.........+.+.|..+. ++.+ + ..++....+..+|++...+.+. .. ..
T Consensus 182 v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~--------~~--K~ 251 (395)
T PF08596_consen 182 VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG--------AH--KS 251 (395)
T ss_dssp EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---E--------EE--EE
T ss_pred EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcc--------cc--ee
Confidence 122222234566666654 3211 0 1233334456899999887532 21 11
Q ss_pred eccCcceEEEEE-------CCCEEEEEeCCCcEEEEcC-CCceeEEEcccCC---CCeEEEEEcCCCCEEEEEeCCCCEE
Q 001391 305 YGHNARVWDCCL-------TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIK 373 (1088)
Q Consensus 305 ~~h~~~I~~v~~-------~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~---~~V~~l~~~~dg~~l~tg~~Dg~I~ 373 (1088)
.........+.+ .+..|++-..+|.++++.+ .-+.+..++-... +.+....++++|..++-.+.. .+.
T Consensus 252 ~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~ 330 (395)
T PF08596_consen 252 FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQ 330 (395)
T ss_dssp -SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEE
T ss_pred eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEE
Confidence 222122222333 1467888889999999999 6666666554321 123455677888766555433 344
Q ss_pred EEEc
Q 001391 374 VHQF 377 (1088)
Q Consensus 374 iwd~ 377 (1088)
++.+
T Consensus 331 l~sv 334 (395)
T PF08596_consen 331 LFSV 334 (395)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0039 Score=68.10 Aligned_cols=215 Identities=15% Similarity=0.146 Sum_probs=128.9
Q ss_pred eccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCC----ceeEEEcccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 001391 305 YGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDG----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1088)
Q Consensus 305 ~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~----~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~ 378 (1088)
+-|...|+.+... -.++++++.||.++.|.-.. +.+..+..|.+ .|.+++.+.++.++.|.+. |..++++|+.
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEee
Confidence 4577778887777 78999999999999999743 33445677877 6999999999999999887 9999999985
Q ss_pred CC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEE
Q 001391 379 AF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1088)
Q Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~ 457 (1088)
.- ++..+. .+..++...-..+.+..+..++.+. ..+|.+..++-...... .-
T Consensus 85 n~DminmiK------------------L~~lPg~a~wv~skGd~~s~IAVs~-------~~sg~i~VvD~~~d~~q--~~ 137 (558)
T KOG0882|consen 85 NFDMINMIK------------------LVDLPGFAEWVTSKGDKISLIAVSL-------FKSGKIFVVDGFGDFCQ--DG 137 (558)
T ss_pred ccchhhhcc------------------cccCCCceEEecCCCCeeeeEEeec-------ccCCCcEEECCcCCcCc--cc
Confidence 42 110000 0111111111112222233333221 23444553322221110 11
Q ss_pred eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccc--------eeeeEEE
Q 001391 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER--------QLLGTYW 529 (1088)
Q Consensus 458 ~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 529 (1088)
...+-+..++.++...+.+ +.+++....|.|.-|.....-+.+...+. |...++. +....-.
T Consensus 138 ~fkklH~sPV~~i~y~qa~--------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~--~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAG--------DSAVSIDISGMVEYWSAEGPFQFPRTNLN--FELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred eecccccCceEEEEeeccc--------cceeeccccceeEeecCCCcccCcccccc--ccccccchhhcccccccCccce
Confidence 2233345677777775543 77888888999999987742111211111 1111111 1112225
Q ss_pred eecCCCeEEEEECCCCeEEEEecCCCCC
Q 001391 530 CKSLGHRFIFTADPKGRLKLWQLCDPFS 557 (1088)
Q Consensus 530 ~~s~dg~~L~s~~~dg~i~vwd~~~~~~ 557 (1088)
+++|++..+.+-+.|..|++++...+..
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchh
Confidence 7899999999999999999999887653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.073 Score=63.37 Aligned_cols=192 Identities=10% Similarity=0.102 Sum_probs=117.5
Q ss_pred CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC-EEEEEEcCCC
Q 001391 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS-IFRIEWSSCG 268 (1088)
Q Consensus 190 s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-V~~v~~sp~g 268 (1088)
++.+..++.|+.+|.|.+.+-. .+.++.++.+... |..+-...+.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------------~~~~~~fqa~~~siv~~L~~~~~~ 77 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------------FQLIRGFQAYEQSIVQFLYILNKQ 77 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------------ceeeehheecchhhhhHhhcccCc
Confidence 4667889999999988887754 3444667777766 4444444444
Q ss_pred CEEEEEECCC-----cEEEEEcCCCcccCCCCceeeeceeeec-----cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-
Q 001391 269 SKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYG-----HNARVWDCCLT--DSFIITAGEDCTCRVWGS- 335 (1088)
Q Consensus 269 ~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~i~~~~~~~-----h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~- 335 (1088)
.+|++.+.|. .+++|+++......+ ++++......+ .+.++.+++.+ -..+|.|-.+|.|..+.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~s--P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCC--cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 6888877775 489999987543211 33331112222 24567778887 478999999999988864
Q ss_pred --CCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccce
Q 001391 336 --DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1088)
Q Consensus 336 --~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1088)
..+-.+. +....+.+|+.+++..++..++-...-..|.+|.+.++. ...
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~----------------------------p~~ 207 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT----------------------------PSL 207 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC----------------------------cce
Confidence 1121222 222223489999999888763333334578999886532 012
Q ss_pred eeccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 413 RLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 413 ~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
...+.++...+|..+++...-++.+....++.+
T Consensus 208 ~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY 240 (933)
T KOG2114|consen 208 KVLDNNGISLNCSSFSDGTYQFICAGSEFLYFY 240 (933)
T ss_pred eeeccCCccceeeecCCCCccEEEecCceEEEE
Confidence 223445556788888876543444445555533
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.49 Score=53.20 Aligned_cols=190 Identities=15% Similarity=0.179 Sum_probs=117.4
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-EC---------C-CEEEEEEeccCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FG---------E-KRVKLFELNFELSPNS 112 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~g---------d-~~v~iw~l~~~~~~~~ 112 (1088)
..|++.|..+.+.+.++.-.....+.+++.... . .+......++++ .+ . |.|.++++....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l--~--~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---- 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKL--K--GDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---- 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEE--T--TS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEE--c--CccccccCEEEEEecccccccccccCcEEEEEEEEccc----
Confidence 468999999999998888777767777776422 0 110000144444 33 1 789999998631
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-eEEEeccCCceeEEEEeeecCCC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNL 191 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~ 191 (1088)
....+++++.... ..+.|++++-.. +. |+.+. .+.|.+|++...+ ....-..+....+.++..
T Consensus 74 ----~~~~~l~~i~~~~-~~g~V~ai~~~~----~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~----- 137 (321)
T PF03178_consen 74 ----ENNFKLKLIHSTE-VKGPVTAICSFN----GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV----- 137 (321)
T ss_dssp --------EEEEEEEEE-ESS-EEEEEEET----TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-----
T ss_pred ----ccceEEEEEEEEe-ecCcceEhhhhC----CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-----
Confidence 1111345554443 468899998763 33 54443 5899999998887 554444333335555554
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
.+.+|+.|+....+.++.++.. ......+. -.....+++++.|.++++.+
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~-----------------------------~~~l~~va-~d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEE-----------------------------NNKLILVA-RDYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETT-----------------------------TE-EEEEE-EESS-BEEEEEEEE-SSSEE
T ss_pred cccEEEEEEcccCEEEEEEEcc-----------------------------CCEEEEEE-ecCCCccEEEEEEecCCcEE
Confidence 2569999999999999877610 00111222 12345678999998776799
Q ss_pred EEEECCCcEEEEEcCC
Q 001391 272 VSVSDDRSARIWEVRA 287 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~ 287 (1088)
+.+..+|.+.++....
T Consensus 188 i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTSEEEEEEE-S
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999998864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0099 Score=64.33 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=68.8
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
++...-+.+|...|.+++|+| ..+ ++..++.+++|+|.|+++...+.+...+ ..+||+++.- .+...|++|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDl--de~h~IYaGl 255 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDL--DERHVIYAGL 255 (463)
T ss_pred cchhhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccceeeeheecc--CCceeeeecc--CCcceeEEec
Confidence 444556778899999999999 555 7888999999999999999888777655 4578887743 3477899999
Q ss_pred cCCeEEEEEec
Q 001391 201 IYNEIIVWKVD 211 (1088)
Q Consensus 201 ~dg~I~vwd~~ 211 (1088)
..|.|.|||++
T Consensus 256 ~nG~VlvyD~R 266 (463)
T KOG1645|consen 256 QNGMVLVYDMR 266 (463)
T ss_pred cCceEEEEEcc
Confidence 99999999998
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.28 Score=57.13 Aligned_cols=189 Identities=9% Similarity=0.099 Sum_probs=105.7
Q ss_pred cEEEEEEecccCCCCE-EEEEEc---CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE-EecC--CeEE
Q 001391 134 WVFDVCFLKVCNGNRS-LAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIY--NEII 206 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~-lasgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~d--g~I~ 206 (1088)
.+..-.|+| ||+. ++..+. +..|.++|+.+++...-...+. ......+ +||+..++. .+.+ ..|.
T Consensus 189 ~~~~p~wSp---DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g--~~~~~~~---SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWAN---KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG--MLVVSDV---SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECC---CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC--cEEeeEE---CCCCCEEEEEEccCCCcEEE
Confidence 678899999 9984 554333 3568899998886544333222 1222333 688876553 3334 4566
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIW 283 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg--~v~iW 283 (1088)
++++. .+. ...+..+.+......|+|||+.|+-.+. .+ .|.+.
T Consensus 261 ~~dl~---------------------------------~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 261 LYDTN---------------------------------TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EEECC---------------------------------CCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 66765 222 2333333333345579999998776654 33 57777
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---------CcEEEEcCCCceeEEEcccCCCCeE
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---------g~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
|+.+++. +.+ +..+.. ...|+ +..|+..... ..|.+.|+.+.....+.... ...
T Consensus 307 dl~~g~~------~rl---t~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~ 371 (419)
T PRK04043 307 KLNSGSV------EQV---VFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQ 371 (419)
T ss_pred ECCCCCe------EeC---ccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcC
Confidence 7766432 111 222221 13566 5555544433 25777787544455554432 233
Q ss_pred EEEEcCCCCEEEEEeCC-CC--EEEEEcCC
Q 001391 353 RCLYDSLSSLLVTAGFD-SA--IKVHQFQA 379 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~D-g~--I~iwd~~~ 379 (1088)
...|+|||+.|+-...+ +. +.+.++++
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 67899999977665543 33 34444443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.64 Score=53.95 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=39.6
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEec
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~ 105 (1088)
.|+||+. +|+++.++.-.. .+|.++.|+ .+. .++++..||.++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt-------~~e----~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWT-------DDE----ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEEC-------CCC----eEEEEEcCCEEEEEeCC
Confidence 5999995 578888877544 489999998 443 89999999999999986
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.18 Score=59.65 Aligned_cols=240 Identities=9% Similarity=-0.049 Sum_probs=125.9
Q ss_pred CCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEec--cc----------ccccCCCccceeeEEEEEC--CC
Q 001391 34 SLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN--FI----------NCTEGSVSTRVTFEVALFG--EK 97 (1088)
Q Consensus 34 ~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s--~~----------~~~~~~d~~~~~~~la~~g--d~ 97 (1088)
.|+||..-. .+.|-..++..-++-..+..+....+|++.|- |. .++..||| ..+.... .+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDG----k~l~~~~ey~~ 215 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDG----KDLDDPKKYRS 215 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCC----CEeecccceeE
Confidence 378888876 36677777776655555555555567877774 22 12333455 2222222 35
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
.+.+.|.++ .+...++.- .+.-.-++++| +++++++.+.+ .+.+..+..+....
T Consensus 216 ~vSvID~et---------------meV~~qV~V-dgnpd~v~~sp---dGk~afvTsyN-------sE~G~tl~em~a~e 269 (635)
T PRK02888 216 LFTAVDAET---------------MEVAWQVMV-DGNLDNVDTDY---DGKYAFSTCYN-------SEEGVTLAEMMAAE 269 (635)
T ss_pred EEEEEECcc---------------ceEEEEEEe-CCCcccceECC---CCCEEEEeccC-------cccCcceeeecccc
Confidence 566666553 222222211 12345677888 88888777531 22222222222211
Q ss_pred ceeEEEEee---ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 178 RCLLYSMKL---WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 178 ~~~~~s~~~---~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
...+....+ ....++|.....+ ++.|.+.|..+.... ....+..+ .
T Consensus 270 ~d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~----------------------------~~~v~~yI-P 318 (635)
T PRK02888 270 RDWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANA----------------------------GSALTRYV-P 318 (635)
T ss_pred CceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccC----------------------------CcceEEEE-E
Confidence 111111100 0112455554442 577899997710000 01223222 2
Q ss_pred CCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCC---CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 255 HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDS---DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~---~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
-.....++.++|||++++.++ .+.+|.+.|+.+.+..-. +....+. ....-.......+|. +....|-.-|.
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv--aevevGlGPLHTaFDg~G~aytslf~ds 396 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV--AEPELGLGPLHTAFDGRGNAYTTLFLDS 396 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE--EeeccCCCcceEEECCCCCEEEeEeecc
Confidence 346678999999999987655 489999999988542100 0001110 001112334566777 56777888899
Q ss_pred cEEEEcCC
Q 001391 329 TCRVWGSD 336 (1088)
Q Consensus 329 ~i~vWd~~ 336 (1088)
.|..|++.
T Consensus 397 qv~kwn~~ 404 (635)
T PRK02888 397 QIVKWNIE 404 (635)
T ss_pred eeEEEehH
Confidence 99999983
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.12 Score=60.09 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=116.3
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
....+.++ |+| +.++++|++.-.|+.... .+... .+.-...+|.+ .
T Consensus 34 ~p~~ls~n-------png----r~v~V~g~geY~iyt~~~---------------~r~k~-----~G~g~~~vw~~---~ 79 (443)
T PF04053_consen 34 YPQSLSHN-------PNG----RFVLVCGDGEYEIYTALA---------------WRNKA-----FGSGLSFVWSS---R 79 (443)
T ss_dssp --SEEEE--------TTS----SEEEEEETTEEEEEETTT---------------TEEEE-----EEE-SEEEE-T---S
T ss_pred CCeeEEEC-------CCC----CEEEEEcCCEEEEEEccC---------------Ccccc-----cCceeEEEEec---C
Confidence 35566666 887 788889999999998321 11111 13345677876 5
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCc-eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++ +|+-...++|.++.--..+....+..+.. ..++. |.+|...+. +.|.+||+.
T Consensus 80 n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---------G~LL~~~~~-~~i~~yDw~-------------- 134 (443)
T PF04053_consen 80 NR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---------GNLLGVKSS-DFICFYDWE-------------- 134 (443)
T ss_dssp SE-EEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----------SSSEEEEET-TEEEEE-TT--------------
T ss_pred cc-EEEEECCCeEEEEEcCccccceEEcCCcccceEEc---------CcEEEEECC-CCEEEEEhh--------------
Confidence 55 66666688899964323333233333321 11211 555555543 489999999
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc--CCCCc-eeeece
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDSI-EEVGSS 302 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~--~~~~~-~~i~~~ 302 (1088)
+++.++++... .|..|.|++++.+++-.+.+ .+.+++....... ..+.. ..+.
T Consensus 135 -------------------~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~-- 190 (443)
T PF04053_consen 135 -------------------TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE-- 190 (443)
T ss_dssp -------------------T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE--
T ss_pred -------------------HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE--
Confidence 67777777643 38999999999999998876 6778776543000 00000 1221
Q ss_pred eeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
....-..+|.+.+|.++.++-.... .++-+ +.|+ ...+..-. +++.-+.+.++.+.+....+|+.+..+.++.
T Consensus 191 ~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl-~~Ge-~~~i~~ld-~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 191 LIHEISERIKSGCWVEDCFIYTTSN-HLKYL-VNGE-TGIIAHLD-KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE-S--SEEEEETTEEEEE-TT-EEEEE-ETTE-EEEEEE-S-S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEEecceeEEEEEEcCEEEEEcCC-eEEEE-EcCC-cceEEEcC-CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2222256788888886655544444 66552 1332 22332222 3688888999888899999999999998753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.77 Score=54.89 Aligned_cols=118 Identities=8% Similarity=-0.040 Sum_probs=59.9
Q ss_pred EEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEE-EEecccccccCCC-ccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSV-STRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 37 ~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~-i~~s~~~~~~~~d-~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
.+..+. ++.|+-.|..+|+++-++.......... ..+.. .... .+ + .+++...++.|.-+|.++..
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~-~~~~----~V~v~~~~g~v~AlD~~TG~----- 131 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAY-WDPR----KVFFGTFDGRLVALDAETGK----- 131 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEE-ccCC----eEEEecCCCeEEEEECCCCC-----
Confidence 344444 7999999999999988776533200000 00000 0000 12 2 56666678999999887643
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE---------cCCcEEEEEcCCCceEEEec
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC---------SDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs---------~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
......+..+...-..+.-+|.- .+..++.++ .++.+.-.|..+++.+-+..
T Consensus 132 --------~~W~~~~~~~~~~~~~i~ssP~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 132 --------QVWKFGNNDQVPPGYTMTGAPTI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred --------EeeeecCCCCcCcceEecCCCEE-ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 11111111110000011111211 223444543 36788999999998877654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.17 Score=60.37 Aligned_cols=183 Identities=15% Similarity=0.219 Sum_probs=112.3
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc-EEEEEEecccCCCCEEEEEEcCC-----cEEEEEcCCC
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW-VFDVCFLKVCNGNRSLAIGCSDN-----SIRVWDISNS 167 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-I~~v~f~p~~~d~~~lasgs~Dg-----~V~iWd~~~~ 167 (1088)
..+|.|.+++-. ++.++.+..+... |..+.... +..+|++-+.|+ .++||+++..
T Consensus 42 t~~G~V~~Ln~s----------------~~~~~~fqa~~~siv~~L~~~~---~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 42 TADGRVVILNSS----------------FQLIRGFQAYEQSIVQFLYILN---KQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred eccccEEEeccc----------------ceeeehheecchhhhhHhhccc---CceEEEEEeecCCCCceEEEEeccccc
Confidence 347777777644 4566777777766 55555443 446788877665 4899999643
Q ss_pred ------ceE-----EEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 168 ------SII-----LEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 168 ------~~~-----~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
.++ ..+..| ......++++ +.+-..+|.|-.+|.|..+.-+-.+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~V---s~~l~~Iv~Gf~nG~V~~~~GDi~R--------------------- 158 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAV---SEDLKTIVCGFTNGLVICYKGDILR--------------------- 158 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEE---EccccEEEEEecCcEEEEEcCcchh---------------------
Confidence 223 111223 2233334444 3457789999999999998643000
Q ss_pred eeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE
Q 001391 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
..+....-....+++|+++++..+++.++-+.....|.+|.+..... .. ..+..|.....|..
T Consensus 159 --------Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p-------~~--~~ld~~G~~lnCss 221 (933)
T KOG2114|consen 159 --------DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP-------SL--KVLDNNGISLNCSS 221 (933)
T ss_pred --------ccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc-------ce--eeeccCCccceeee
Confidence 01122222234567899999999888744444445799999985321 11 25777888899999
Q ss_pred EC-CCE-EEEEeCCCcEEEEcCCC
Q 001391 316 LT-DSF-IITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 316 ~~-~~~-l~sg~~Dg~i~vWd~~~ 337 (1088)
++ +.. ++.++ +..+.+|+.++
T Consensus 222 ~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 222 FSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred cCCCCccEEEec-CceEEEEcCCC
Confidence 98 333 44444 44688999854
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.33 Score=51.60 Aligned_cols=208 Identities=8% Similarity=0.047 Sum_probs=110.5
Q ss_pred eeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
..+.+-.+.+..++|+| +.+ ++++....+.|...+. +|+.+.++.-....-.-.+++. .++.++++.-.++.
T Consensus 15 ~~l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~---g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL---GNGRYVLSEERDQR 87 (248)
T ss_dssp EE-TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE----STTEEEEEETTTTE
T ss_pred eECCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE---CCCEEEEEEcCCCc
Confidence 45667777899999999 755 5566666777877776 5777777653322222234442 45666666667899
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-----eCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
+.++++....... .......+ ..++..+-+++|+|.++.|+.+-+..-
T Consensus 88 L~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P 140 (248)
T PF06977_consen 88 LYIFTIDDDTTSL---------------------------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP 140 (248)
T ss_dssp EEEEEE----TT-----------------------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS
T ss_pred EEEEEEecccccc---------------------------chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC
Confidence 9999985111000 01111111 135567899999999888888877777
Q ss_pred EEEEEcCCCcccCCCCceeeec---eeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccCC-----
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG----- 348 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~---~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~----- 348 (1088)
.+++.+..... ......... .........+.+++++ +.+++...++..+..+|.+|+++..+.-..+
T Consensus 141 ~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~ 218 (248)
T PF06977_consen 141 KRLYEVNGFPG--GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLS 218 (248)
T ss_dssp EEEEEEESTT---SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-S
T ss_pred hhhEEEccccC--ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcc
Confidence 77877764110 000111100 0011233457888887 5688888999999999999988776533221
Q ss_pred ---CCeEEEEEcCCCCEEEEEeCCC
Q 001391 349 ---RGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 349 ---~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
..--.|++.++|++.++ +.-+
T Consensus 219 ~~~~QpEGIa~d~~G~LYIv-sEpN 242 (248)
T PF06977_consen 219 KDIPQPEGIAFDPDGNLYIV-SEPN 242 (248)
T ss_dssp S---SEEEEEE-TT--EEEE-ETTT
T ss_pred cccCCccEEEECCCCCEEEE-cCCc
Confidence 23678999999875544 4433
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.67 Score=57.76 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce--EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEE
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd 209 (1088)
++.|.++.|.. +...++.+..+|.|.+-|.++... +.....+ +.++.+ ++|+.+++-.+..+++.+-+
T Consensus 68 d~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~eivg~vd~G----I~aasw---S~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLA---DTNSICVITALGDIILVDPETLELEIVGNVDNG----ISAASW---SPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEec---ccceEEEEecCCcEEEEcccccceeeeeeccCc----eEEEee---cCCCcEEEEEeCCcEEEEEe
Confidence 36899999998 888888999999999998876543 3333333 223333 68888988888888887765
Q ss_pred ec
Q 001391 210 VD 211 (1088)
Q Consensus 210 ~~ 211 (1088)
..
T Consensus 138 ~~ 139 (1265)
T KOG1920|consen 138 KD 139 (1265)
T ss_pred cc
Confidence 43
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.6 Score=48.00 Aligned_cols=265 Identities=15% Similarity=0.109 Sum_probs=145.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE--E-----CC--CEEEEEEeccCCCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL--F-----GE--KRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~--~-----gd--~~v~iw~l~~~~~~~~~~ 114 (1088)
+.+.|+|..+++.+..+...- ...+..+ ||++ ..+.+. + |+ -.|.+||..+-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~s-------pdgk--~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~------ 78 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALS-------PDGK--TIYVAETFYSRGTRGERTDVVEIWDTQTLS------ 78 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE--------TTSS--EEEEEEEEEEETTEEEEEEEEEEEETTTTE------
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeEC-------CCCC--EEEEEEEEEeccccccceeEEEEEecCcCc------
Confidence 589999999999999888633 3446677 7774 122222 1 12 359999988532
Q ss_pred CCccccccceeeeccC-CC----CcEEEEEEecccCCCCEEEEE--EcCCcEEEEEcCCCceEEEeccCCceeEEEEeee
Q 001391 115 QPETCVNLSLVQSLPR-LS----HWVFDVCFLKVCNGNRSLAIG--CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLW 187 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~-h~----~~I~~v~f~p~~~d~~~lasg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~ 187 (1088)
.+..-.++. |. ......+++. |++++++. +--.+|.|-|+..++.+.++..+....+|-.
T Consensus 79 -------~~~EI~iP~k~R~~~~~~~~~~~ls~---dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~--- 145 (342)
T PF06433_consen 79 -------PTGEIEIPPKPRAQVVPYKNMFALSA---DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS--- 145 (342)
T ss_dssp -------EEEEEEETTS-B--BS--GGGEEE-T---TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE---
T ss_pred -------ccceEecCCcchheecccccceEEcc---CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec---
Confidence 111111111 01 1223457777 88877764 4566799999999999999988776555542
Q ss_pred cCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEE-EEEEcC
Q 001391 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEWSS 266 (1088)
Q Consensus 188 ~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~-~v~~sp 266 (1088)
. ..-+.+-+.||.+.-..+...... ..+....|..-.++++ .-++..
T Consensus 146 ---~-~~~F~~lC~DGsl~~v~Ld~~Gk~----------------------------~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 146 ---G-NRGFSMLCGDGSLLTVTLDADGKE----------------------------AQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp ---E-TTEEEEEETTSCEEEEEETSTSSE----------------------------EEEEEEESSTTTS-B-S--EEET
T ss_pred ---C-CCceEEEecCCceEEEEECCCCCE----------------------------eEeeccccCCCCcccccccceEC
Confidence 1 235778889999998888711000 0000011111122222 223444
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--------cCcceEEEEEC--CCEEEEE---eC-----CC
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--------HNARVWDCCLT--DSFIITA---GE-----DC 328 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--------h~~~I~~v~~~--~~~l~sg---~~-----Dg 328 (1088)
.+..++-.+..|.|+--|+..... +...+..+.. -.+.-.-++++ .+.|+.. +. |+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSA------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSE------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred CCCeEEEEecCCEEEEEeccCCcc------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 555555567777777777766432 1111111100 00111123443 2222221 12 22
Q ss_pred c--EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEE-eCCCCEEEEEcCC
Q 001391 329 T--CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA-GFDSAIKVHQFQA 379 (1088)
Q Consensus 329 ~--i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg-~~Dg~I~iwd~~~ 379 (1088)
. |-++|+ +++.+..+.... ++.+|.++.+.+ +|++. ..++.+.+||..+
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 2 666666 788888876433 588999998876 66554 4589999999843
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=1 Score=53.41 Aligned_cols=104 Identities=11% Similarity=0.000 Sum_probs=64.7
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcCCC-c---
Q 001391 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDG-K--- 338 (1088)
Q Consensus 266 p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~~~-~--- 338 (1088)
++|++... .++.|.+.|..+.... ....+ ....-....+.+.++ +.++ +++..+.++.|.|+.. +
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~---~~~v~---~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANA---GSALT---RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccC---CcceE---EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 45665444 2567888887761100 00111 233344567788888 4554 5556689999999832 2
Q ss_pred ---------eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 339 ---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 339 ---------~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
...+..--. +-...+|.++|+...|-.-|..|..|++..
T Consensus 358 ~~~~~~~~~vvaevevGl--GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGL--GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCC--CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 123333222 345778999999888888999999999853
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.3 Score=52.91 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=26.8
Q ss_pred EEECCCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 314 v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
+...+..|+.++.||.++.+|. +|+.+..++.
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 3455788999999999999999 8998888765
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.49 E-value=3.5 Score=50.69 Aligned_cols=450 Identities=12% Similarity=0.051 Sum_probs=214.0
Q ss_pred EEEeccCCCCCCCCEEEEEe-CCeEEEEECCC------CeeEEEEee-eCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------GTLIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t------g~~~~~~~~-~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+... |. +|++...- +|.+++..+.+ +..+.-|.. ++.-.|..++|.- .+.+. .+++..
T Consensus 119 ~~VD--p~----~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly----~~s~p----t~~vly 184 (1096)
T KOG1897|consen 119 LLVD--PK----GRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLY----GCSDP----TLAVLY 184 (1096)
T ss_pred EEEC--CC----CcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEc----CCCCC----ceEEEE
Confidence 4455 77 77777766 68888887766 444444442 3344588888862 12332 333333
Q ss_pred C---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 95 G---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 95 g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
. ++.++.|+++.....-.+ .. .+.-..+. +.-+..-| .+.+..|+.|. ..|..-+- .....
T Consensus 185 ~Ds~~~Hv~~yelnl~~ke~~~--------~~-w~~~v~~~--a~~li~VP-~~~gGvlV~ge--~~I~Y~~~--~~~~a 248 (1096)
T KOG1897|consen 185 KDSDGRHVKTYELNLRDKEFVK--------GP-WSNNVDNG--ASMLIPVP-SPIGGVLVIGE--EFIVYMSG--DNFVA 248 (1096)
T ss_pred EcCCCcEEEEEEeccchhhccc--------cc-cccccccC--CceeeecC-CCCceEEEEee--eEEEEeeC--CceeE
Confidence 3 578999988854310000 00 00001111 22222223 11555666654 22322222 22222
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec-cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.......+..+. +.-.-..++...+.|+.+|.+...-+. +++... ......
T Consensus 249 i~p~~~~~~t~~-~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s---------------------------~~~lkv 300 (1096)
T KOG1897|consen 249 IAPLTAEQSTIV-CYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVS---------------------------GLDLKV 300 (1096)
T ss_pred ecccccCCceEE-EcccccCCccEEEEecCCCcEEEEEeeccccccc---------------------------ceEEEE
Confidence 111111111111 111124677788889999988776654 111110 000111
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC------CCEEEEE
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------DSFIITA 324 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~------~~~l~sg 324 (1088)
..-|-..-..++.+.++ ..+.+||.-|.=.+-.+.+.... ......+ .....-++|.+++.- ...++|+
T Consensus 301 e~lge~siassi~~L~n-g~lFvGS~~gdSqLi~L~~e~d~-gsy~~il---et~~NLgPI~Dm~Vvd~d~q~q~qivtC 375 (1096)
T KOG1897|consen 301 EYLGETSIASSINYLDN-GVLFVGSRFGDSQLIKLNTEPDV-GSYVVIL---ETFVNLGPIVDMCVVDLDRQGQGQIVTC 375 (1096)
T ss_pred EecCCcchhhhhhcccC-ceEEEeccCCceeeEEccccCCC-Cchhhhh---hhcccccceeeEEEEeccccCCceEEEE
Confidence 12233444455555555 46777887766667666654321 0001111 112234578887764 2456665
Q ss_pred e---CCCcEEEEcC--CCceeE--EEcccCCCCeEEEE--EcCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCcccccc
Q 001391 325 G---EDCTCRVWGS--DGKQLK--MIKEHIGRGIWRCL--YDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEF 394 (1088)
Q Consensus 325 ~---~Dg~i~vWd~--~~~~~~--~~~~h~~~~V~~l~--~~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 394 (1088)
+ .||++|+..- .-..+. .+.+-. ++|.+. ++++- .+|+.+--+ .-++..+..+ .... ...+|
T Consensus 376 sGa~kdgSLRiiRngi~I~e~A~i~l~Gik--g~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e-~ee~----~~~gf 447 (1096)
T KOG1897|consen 376 SGAFKDGSLRIIRNGIGIDELASIDLPGIK--GMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEE-VEET----EDPGF 447 (1096)
T ss_pred eCCCCCCcEEEEecccccceeeEeecCCcc--ceeEeeccccccCCcEEEEEecc-ceEEEEEccc-eEEe----ccccc
Confidence 4 6899999875 112232 345533 589988 43321 255544333 3455555432 1110 01122
Q ss_pred CCCcceEEeeeC----------------CCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEe
Q 001391 395 NGRTEIFSIKIP----------------NFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1088)
Q Consensus 395 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~ 458 (1088)
..+.+.+-...- ...+....|....+.....++....++++++.++.++...+.+.. ...+
T Consensus 448 ~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~ 524 (1096)
T KOG1897|consen 448 STDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREV 524 (1096)
T ss_pred cccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc---eeee
Confidence 222222111111 111233444444443334444434467777776777655554443 2233
Q ss_pred eeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEE-EeecCCCeE
Q 001391 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTY-WCKSLGHRF 537 (1088)
Q Consensus 459 ~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~ 537 (1088)
.+.....++.|+|+.|-+ -.....+++++|.-+..+.+.-....... .............+.+ .++--|..+
T Consensus 525 ~~~~~e~evaCLDisp~~--d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~-----~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 525 SHKEFEYEVACLDISPLG--DAPNKSRLLAVGLWSDISMILTFLPDLIL-----ITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred eeheecceeEEEecccCC--CCCCcceEEEEEeecceEEEEEECCCcce-----eeeeccCCCccchheeeEEeeccceE
Confidence 344456789999998653 00123358898887776655544322111 1111111111112221 345556889
Q ss_pred EEEECCCCeEEEEecC
Q 001391 538 IFTADPKGRLKLWQLC 553 (1088)
Q Consensus 538 L~s~~~dg~i~vwd~~ 553 (1088)
|.++..||.+..+-+.
T Consensus 598 LlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLD 613 (1096)
T ss_pred EEEEcCCceEEEEEEE
Confidence 9999999999776655
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0086 Score=42.09 Aligned_cols=38 Identities=34% Similarity=0.605 Sum_probs=33.7
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
.++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.25 Score=44.69 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=49.3
Q ss_pred EEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 135 VFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 135 I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
|.++++...+.|| ..|++|+.|..||+|+- .+.+.++..... +.++.. .....++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~--v~~L~~----~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDK--VTSLCS----LGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccc--eEEEEE----cCCCEEEEEecCCEEEEEeCc
Confidence 7788888765555 47899999999999974 356666654443 233332 234679999999999999854
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.9 Score=45.88 Aligned_cols=165 Identities=10% Similarity=0.065 Sum_probs=91.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
..+++|+|. |+ ...|+|-.| +.|..++. +|++++++.........+|++. .++ .++++..
T Consensus 22 ~e~SGLTy~--pd----~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-------g~~----~~vl~~E 83 (248)
T PF06977_consen 22 DELSGLTYN--PD----TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-------GNG----RYVLSEE 83 (248)
T ss_dssp S-EEEEEEE--TT----TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--------STT----EEEEEET
T ss_pred CCccccEEc--CC----CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-------CCC----EEEEEEc
Confidence 459999999 98 666666654 88888886 5888888775333358899997 554 5555554
Q ss_pred -CCEEEEEEeccCCCCCCCCCCccccccceee--eccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC---Cce
Q 001391 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQ--SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SSI 169 (1088)
Q Consensus 96 -d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~---~~~ 169 (1088)
++.+.++++......-. ....+.+. ....+...+-.++|.| .++.|+.+-...-..++.+.. ...
T Consensus 84 r~~~L~~~~~~~~~~~~~------~~~~~~~~l~~~~~~N~G~EGla~D~---~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLD------RADVQKISLGFPNKGNKGFEGLAYDP---KTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTTEEEEEEE----TT--------EEEEEEEE---S---SS--EEEEEET---TTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCCcEEEEEEeccccccc------hhhceEEecccccCCCcceEEEEEcC---CCCEEEEEeCCCChhhEEEccccCccc
Confidence 78899999854220000 00001111 1123456689999999 877777777777777777754 222
Q ss_pred EEEec-------cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 170 ILEVH-------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 170 ~~~~~-------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+.... ......+.++.++ ...+.+++-......|..+|..
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~--p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYD--PRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEE--TTTTEEEEEETTTTEEEEE-TT
T ss_pred eeeccccccccccceeccccceEEc--CCCCeEEEEECCCCeEEEECCC
Confidence 21111 0011123344554 3456677777888888888855
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0042 Score=72.96 Aligned_cols=198 Identities=10% Similarity=0.116 Sum_probs=124.1
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
+++.++.+..|+...+|++|+- +.+.|++|+-.|.|+++++.+|.......+|... +.....+.+|.+..+.+
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa----vT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA----VTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred hcccchhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccc----cccccccCCcceeeeec
Confidence 4677888889999999999998 8899999999999999999999877766665432 23334466777666655
Q ss_pred cCCe--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 201 IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 201 ~dg~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
.... ..+|++. ..+.+.+.+.+ -.++.|+....+-+.|..-.
T Consensus 1163 s~S~PlsaLW~~~--------------------------------s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1163 SSSSPLSALWDAS--------------------------------STGGPRHSFDE----DKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred cccCchHHHhccc--------------------------------cccCccccccc----cceeehhhhHHHHHhccccc
Confidence 4433 5678776 13344444432 45677876654444444445
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~ 355 (1088)
.+.+||+.++... ...+. ...+....-.++.|++ .+++ .||. +||. ..+.++.|..... .+ .-.
T Consensus 1207 ~a~~YDvqT~~~l----~tylt--~~~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~-~~-~G~ 1273 (1516)
T KOG1832|consen 1207 DALLYDVQTCSPL----QTYLT--DTVTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTD-YG-GGG 1273 (1516)
T ss_pred ceEEEecccCcHH----HHhcC--cchhhhhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhhee-cc-ccc
Confidence 6889999986431 01111 1111111225566663 3333 2443 6888 3344555543332 11 335
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 356 YDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|+|.|..++.-+ -|||+++
T Consensus 1274 FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1274 FHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred ccCCCceEEeec-----hhhhhHH
Confidence 899999888765 4899865
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.25 E-value=4.7 Score=49.62 Aligned_cols=106 Identities=12% Similarity=0.185 Sum_probs=68.3
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 533 ~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
.+|++||.- ...|++|++...++ +.. ...|...+..+...-.|..+++|+--+++.+-.+...
T Consensus 838 fngkllA~I--n~~vrLye~t~~~e-------------Lr~--e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERE-------------LRI--ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccce-------------ehh--hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 477887754 56789998875421 111 1256778999999999999999999999887766543
Q ss_pred cccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeec
Q 001391 613 LLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
.- .+.. .-+.-++ .-.|++.+. ++ ..++-+-.+|.+.+-..+.
T Consensus 901 eg------~f~e-----vArD~~p-~Wmtaveil---~~-d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 901 EG------NFEE-----VARDYNP-NWMTAVEIL---DD-DTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred CC------ceEE-----eehhhCc-cceeeEEEe---cC-ceEEeecccccEEEEEecC
Confidence 20 0101 1111232 458888888 34 4455666788888777664
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.45 Score=43.07 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=66.6
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
|++|++. .-+..+...|++|+ |..||||+- .+.+..+...+ +|..+.-. ..+ ....+..+|+
T Consensus 2 V~al~~~--d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~--~v~~L~~~-------~~~----~F~Y~l~NGT 64 (111)
T PF14783_consen 2 VTALCLF--DFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD--KVTSLCSL-------GGG----RFAYALANGT 64 (111)
T ss_pred eeEEEEE--ecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc--ceEEEEEc-------CCC----EEEEEecCCE
Confidence 6788887 31112235666666 799999994 36777877533 58888776 443 5555666888
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEE
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIR 160 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~ 160 (1088)
|-+|+-.. ++.+. + -...+.++++...+.|| ..|++|-.+|.|-
T Consensus 65 VGvY~~~~----------------RlWRi-K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDRSQ----------------RLWRI-K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEeCcc----------------eeeee-c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 88887542 12221 1 12337777776644444 3688898888764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.57 Score=57.64 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=82.2
Q ss_pred ceeeeEEEeCCCCC-EEEEEEcC-----CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec-eeeeccCcceEEEEEC
Q 001391 245 TAVNLFRLVGHEGS-IFRIEWSS-----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT 317 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~-V~~v~~sp-----~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~-~~~~~h~~~I~~v~~~ 317 (1088)
.++.+.....|... |..++-.. +......|-.+..+..||.+-... ..+.. ...+.......|++-+
T Consensus 513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~------k~v~~~~k~Y~~~~~Fs~~aTt 586 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN------KLVDSQSKQYSSKNNFSCFATT 586 (794)
T ss_pred CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC------ceeeccccccccCCCceEEEec
Confidence 56667776666543 54443221 123456677778899999986421 11110 1122334456777777
Q ss_pred -CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 318 -DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
..+||.|+.+|.||+||..|+..++ +.+-. .||..|..+.||++|+..+ +..+.+++.
T Consensus 587 ~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG-~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 587 EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLG-DPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCceEEEEeCCCcEEeecccchhhhhcCCCCC-CCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 6899999999999999986655444 44444 4899999999999887666 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0097 Score=41.80 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=33.3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
+....+..|...|.++.|.+ ++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence 44566678899999999999 889999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.69 Score=56.94 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=97.3
Q ss_pred CCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCC
Q 001391 33 SSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP 110 (1088)
Q Consensus 33 ~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~ 110 (1088)
....+|+-.. ...|+-.|+..|+++.....+....|..++-...+ ....+ +..++.-.++.+..||.+...
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~-aqlt~----e~tflGls~n~lfriDpR~~~-- 563 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKF-AQLTN----EQTFLGLSDNSLFRIDPRLSG-- 563 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccc-cccCC----CceEEEECCCceEEeccCCCC--
Confidence 4456766654 37899999999999999998776555555432110 00011 267888889999999988543
Q ss_pred CCCCCCcccccccee----eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEee
Q 001391 111 NSQYQPETCVNLSLV----QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKL 186 (1088)
Q Consensus 111 ~~~~~~~~~~~~~~~----~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~ 186 (1088)
.+++ +.+ .......|++-.. ..+||+|+.+|.||+||- .++.-++.-...+..+..+..
T Consensus 564 -----------~k~v~~~~k~Y-~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDv 626 (794)
T PF08553_consen 564 -----------NKLVDSQSKQY-SSKNNFSCFATTE----DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDV 626 (794)
T ss_pred -----------Cceeecccccc-ccCCCceEEEecC----CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEe
Confidence 1111 111 2334567776653 457999999999999994 333333433344555666665
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEec
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+.||.+|++.+ +..|.+.+..
T Consensus 627 ---t~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 627 ---TADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred ---cCCCcEEEEee-cceEEEEEEe
Confidence 67888877654 5667777754
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.96 Score=51.90 Aligned_cols=176 Identities=11% Similarity=0.088 Sum_probs=94.1
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeC-------CcceEEEEecccccccCCCcccee
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-------GIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~-------~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
.|+|++++.| .- -++|+|+ +|.|.|.|++....+..-...+ ...|.++.|+.... +.|+- -.
T Consensus 86 ~g~vtal~~S--~i-----GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~--~~D~y-SS 155 (395)
T PF08596_consen 86 QGPVTALKNS--DI-----GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL--GGDGY-SS 155 (395)
T ss_dssp S-SEEEEEE---BT-----SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE---TTSSS-EE
T ss_pred CCcEeEEecC--CC-----cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec--CCCcc-cc
Confidence 4889999999 43 5999999 6999999999888887744322 23477888874321 22321 11
Q ss_pred e-EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe-ccc--------------CCC---CE
Q 001391 89 F-EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL-KVC--------------NGN---RS 149 (1088)
Q Consensus 89 ~-~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~-p~~--------------~d~---~~ 149 (1088)
. +++....|.+.+|.+.... ++....+.......+.+.|..+..- ... ..+ .-
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~--------~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSS--------NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-G--------GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred eEEEEEeCCCCEEEEEEecCC--------CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 3 3344557999999987422 0111223333334566777777743 200 000 11
Q ss_pred EEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecC--CCCCcEEEEEecCCeEEEEEec
Q 001391 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD--NLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 150 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~--s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+++...+..+|++...+.+...+.. ........+.+... ...+..|++-..+|.|+++.+-
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 3334447889999998877766554 22122222333211 1246678888899999999987
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.4 Score=49.37 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v 99 (1088)
...+.++ |+ +++++++.+|.-.||.....+-.. .+ .-...+|. +.+ .+++.-..++|
T Consensus 35 p~~ls~n--pn----gr~v~V~g~geY~iyt~~~~r~k~--~G----~g~~~vw~-------~~n----~yAv~~~~~~I 91 (443)
T PF04053_consen 35 PQSLSHN--PN----GRFVLVCGDGEYEIYTALAWRNKA--FG----SGLSFVWS-------SRN----RYAVLESSSTI 91 (443)
T ss_dssp -SEEEE---TT----SSEEEEEETTEEEEEETTTTEEEE--EE----E-SEEEE--------TSS----EEEEE-TTS-E
T ss_pred CeeEEEC--CC----CCEEEEEcCCEEEEEEccCCcccc--cC----ceeEEEEe-------cCc----cEEEEECCCeE
Confidence 5689999 99 999999999999999955444422 22 23556777 543 44444448889
Q ss_pred EEEE-eccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC-
Q 001391 100 KLFE-LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE- 177 (1088)
Q Consensus 100 ~iw~-l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~- 177 (1088)
.|+. ++... ...+... ..+..+- .|.+|...+ ++.|.+||+++++.+.++..+.
T Consensus 92 ~I~kn~~~~~----------------~k~i~~~-~~~~~If------~G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~v 147 (443)
T PF04053_consen 92 KIYKNFKNEV----------------VKSIKLP-FSVEKIF------GGNLLGVKS-SDFICFYDWETGKLIRRIDVSAV 147 (443)
T ss_dssp EEEETTEE-T----------------T-----S-S-EEEEE-------SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-
T ss_pred EEEEcCcccc----------------ceEEcCC-cccceEE------cCcEEEEEC-CCCEEEEEhhHcceeeEEecCCC
Confidence 9973 33211 1111110 1122221 256666665 4489999999999999998663
Q ss_pred ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+.+.| ++++.+++-.+. .++.+++..
T Consensus 148 k~V~W-------s~~g~~val~t~-~~i~il~~~ 173 (443)
T PF04053_consen 148 KYVIW-------SDDGELVALVTK-DSIYILKYN 173 (443)
T ss_dssp EEEEE--------TTSSEEEEE-S--SEEEEEE-
T ss_pred cEEEE-------ECCCCEEEEEeC-CeEEEEEec
Confidence 44444 367888888764 477787765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.60 E-value=5.6 Score=45.32 Aligned_cols=276 Identities=13% Similarity=0.073 Sum_probs=135.7
Q ss_pred CCceEEecCCCce------eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCC------------
Q 001391 4 KDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG------------ 65 (1088)
Q Consensus 4 ~~i~iWdl~~g~~------~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~------------ 65 (1088)
+.+.|+|+.+++. ...+....+| |+ ++++|-..++.|.+++..+++..+--.....
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~s--P~----g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWS--PD----GKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE---SS----STEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred eeEEEEecCCCceEECcCCccccccceee--cC----CCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 4577899999872 2457889999 99 9999999999999999988855432221111
Q ss_pred ----cceEEEEecccccccCCCccceeeEEEE--ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 66 ----IRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 66 ----~~V~~i~~s~~~~~~~~d~~~~~~~la~--~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
.+-.++-|| ||+ ..||. ..+..|+.+.+..-.... . ---.+..+.
T Consensus 97 EEv~~~~~~~~WS-------pd~----~~la~~~~d~~~v~~~~~~~~~~~~-----------~-------~yp~~~~~~ 147 (353)
T PF00930_consen 97 EEVFDRRSAVWWS-------PDS----KYLAFLRFDEREVPEYPLPDYSPPD-----------S-------QYPEVESIR 147 (353)
T ss_dssp HHTSSSSBSEEE--------TTS----SEEEEEEEE-TTS-EEEEEEESSST-----------E-------SS-EEEEEE
T ss_pred ccccccccceEEC-------CCC----CEEEEEEECCcCCceEEeeccCCcc-----------c-------cCCcccccc
Confidence 012455567 887 34444 346666666655221000 0 001344455
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCceEE-Eec---cCCceeEEEEeeecCCCCCc-E-EEEEecCC---eEEEEEe
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL-EVH---SPERCLLYSMKLWGDNLEAL-R-IASGTIYN---EIIVWKV 210 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~-~~~---~~~~~~~~s~~~~~~s~~~~-~-l~sg~~dg---~I~vwd~ 210 (1088)
+-. -|.-.... .+.++|+.+++... ... ......+..+.+. +++. + +..-..+. .+.+.|.
T Consensus 148 YPk---~G~~np~v----~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~---~d~~~l~~~~~nR~q~~~~l~~~d~ 217 (353)
T PF00930_consen 148 YPK---AGDPNPRV----SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS---PDGKRLWVQWLNRDQNRLDLVLCDA 217 (353)
T ss_dssp --B---TTS---EE----EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE---ETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred cCC---CCCcCCce----EEEEEECCCCcEEEeeeccccCCCccCcccceec---CCCcEEEEEEcccCCCEEEEEEEEC
Confidence 422 22222111 36678888776532 211 2334445555542 3444 2 22233332 2344455
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCE---EEEEEc-CCCC-EEEEEECCCcEEEEEc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI---FRIEWS-SCGS-KLVSVSDDRSARIWEV 285 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V---~~v~~s-p~g~-~l~s~s~Dg~v~iWd~ 285 (1088)
.++ ..+.+. .....++| ....|. +++. ++.....||.-+|+-+
T Consensus 218 ~tg-------------------------------~~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 218 STG-------------------------------ETRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp CTT-------------------------------TCEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred CCC-------------------------------ceeEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 411 111111 11222333 244444 5554 4445557776666555
Q ss_pred CCCcccCCCCceeeeceeeeccCcceEE-EEEC---CCEEEEEeCCC----cEEEEcCC-CceeEEEcccCCCCeEEEEE
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLT---DSFIITAGEDC----TCRVWGSD-GKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~~-v~~~---~~~l~sg~~Dg----~i~vWd~~-~~~~~~~~~h~~~~V~~l~~ 356 (1088)
..... ... .+....-.|.. +.+. +.+.+++..+. .+..-++. +..+..+....+. -..+.|
T Consensus 266 ~~~~~-------~~~--~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-~~~~~~ 335 (353)
T PF00930_consen 266 DLDGG-------KPR--QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-HYSASF 335 (353)
T ss_dssp ETTSS-------EEE--ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-TEEEEE
T ss_pred ccccc-------cee--ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-ceEEEE
Confidence 44221 111 23333445544 3344 23455666533 34444456 7778888766653 268999
Q ss_pred cCCCCEEEEE
Q 001391 357 DSLSSLLVTA 366 (1088)
Q Consensus 357 ~~dg~~l~tg 366 (1088)
+|++++++-.
T Consensus 336 Spdg~y~v~~ 345 (353)
T PF00930_consen 336 SPDGKYYVDT 345 (353)
T ss_dssp -TTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999976644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.6 Score=44.87 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=115.6
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~v 207 (1088)
+.|-...|.++.|+| +.+.|++......-.||=..+|+.+.++....-.-.-.+.+ ..++.++++--.++.+.+
T Consensus 81 i~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey---ig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY---IGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE---ecCCEEEEEehhcceEEE
Confidence 345556699999999 88888888878888888778899888875322111112222 245667777778899998
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
+.+.-.... ..... ..-++......+..--+++|.|..+.|..+=+-.-++|+.+..
T Consensus 155 ~~vd~~t~~---------------------~~~~~--~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 155 FTVDADTTV---------------------ISAKV--QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEEcCCccE---------------------Eeccc--eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 887611000 00000 0111111222245567899999999999888888888888774
Q ss_pred CcccCCCCceeeeceeeeccC-------cceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccC
Q 001391 288 EYWKDSDSIEEVGSSVLYGHN-------ARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHI 347 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~-------~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~ 347 (1088)
.... -... ....+. ..|.++.|. +.+++.+.+++.+.-.|..|.++..+.-+.
T Consensus 212 ~~~~-----l~~~--~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~ 274 (316)
T COG3204 212 SPSS-----LSVH--ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK 274 (316)
T ss_pred CCcc-----cccc--cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc
Confidence 3210 0000 111111 235667776 678899999999999999888766654433
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.44 E-value=4.4 Score=43.09 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=73.5
Q ss_pred EEEEEeccCCCCCCCCEEEEEe--C-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 21 SALCFVHLPSHLSSLPFLLAGS--G-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~--d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
-++.|. .+ +.++-+.. + ..|+.+|+.+|+.+.........--.+++.. .|. ....++.++
T Consensus 48 QGL~~~--~~----g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-------~d~----l~qLTWk~~ 110 (264)
T PF05096_consen 48 QGLEFL--DD----GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-------GDK----LYQLTWKEG 110 (264)
T ss_dssp EEEEEE--ET----TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-------TTE----EEEEESSSS
T ss_pred ccEEec--CC----CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-------CCE----EEEEEecCC
Confidence 366674 33 44444433 2 6899999999998887776554334567766 453 778889999
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
...+||.++ ++.+.++.- ...=|.++. |++.|+.......++++|..+.+...++.
T Consensus 111 ~~f~yd~~t---------------l~~~~~~~y-~~EGWGLt~-----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 111 TGFVYDPNT---------------LKKIGTFPY-PGEGWGLTS-----DGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEEEEETTT---------------TEEEEEEE--SSS--EEEE-----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred eEEEEcccc---------------ceEEEEEec-CCcceEEEc-----CCCEEEEECCccceEEECCcccceEEEEE
Confidence 999999874 445554432 233456663 66666666667789999998887766654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.13 E-value=7.7 Score=44.06 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=92.8
Q ss_pred CCCEEEEEe--CCeEEEEECCC----CeeEEEEee---eCC---cceEEEEecccccccCCCccceeeEEEEECC-----
Q 001391 34 SLPFLLAGS--GSQVLLYDLEA----GTLIRPFQV---FHG---IRLHGISCNFINCTEGSVSTRVTFEVALFGE----- 96 (1088)
Q Consensus 34 ~~~~laag~--d~~I~vwd~~t----g~~~~~~~~---~~~---~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd----- 96 (1088)
.+++|++.. .+.|+|.|+.+ .++.+.+.. +.. ..-|.+... |+|. .++.+-||
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl-------p~G~---imIS~lGd~~G~g 155 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL-------PDGR---IMISALGDADGNG 155 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--------SS-----EEEEEEEETTS-S
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec-------CCcc---EEEEeccCCCCCC
Confidence 478888876 48999999874 355555553 111 122333333 6662 44544341
Q ss_pred -CEEEEEEeccCCCCCCCCCCccccccceeeecc---CCCCcEEEEEEecccCCCCEEEEEEc-----------------
Q 001391 97 -KRVKLFELNFELSPNSQYQPETCVNLSLVQSLP---RLSHWVFDVCFLKVCNGNRSLAIGCS----------------- 155 (1088)
Q Consensus 97 -~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~I~~v~f~p~~~d~~~lasgs~----------------- 155 (1088)
+.+.++|-++ ++...... +...--++.-+.| ..+.++|...
T Consensus 156 ~Ggf~llD~~t---------------f~v~g~We~~~~~~~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 156 PGGFVLLDGET---------------FEVKGRWEKDRGPQPFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp --EEEEE-TTT-----------------EEEE--SB-TT------EEEET---TTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCcEEEEcCcc---------------ccccceeccCCCCCCCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHhhc
Confidence 3455655442 11222111 1123345666777 6666666431
Q ss_pred ---CCcEEEEEcCCCceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 156 ---DNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 156 ---Dg~V~iWd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
..++.+||+.+.+.++++.-++ ..+...+++..+.....-++.+.-.++|..|--..
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~------------------- 278 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD------------------- 278 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-------------------
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-------------------
Confidence 4579999999999999998654 44566788766544444455444555666554320
Q ss_pred CCCceeEecccccceeeeEEEeC-----------------CCCCEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCcc
Q 001391 232 SDFKCFKLQDQQHTAVNLFRLVG-----------------HEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~g-----------------h~~~V~~v~~sp~g~~l~-s~s~Dg~v~iWd~~~~~~ 290 (1088)
++. | ..+.+..+.. -..-|+.|..|.|.++|. ++-.+|.||.||+.....
T Consensus 279 --~g~---W----~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 279 --DGE---W----AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --TTE---E----EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred --CCC---e----eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 000 0 1111111111 134578999999999885 455689999999998644
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.12 E-value=6.7 Score=43.28 Aligned_cols=278 Identities=13% Similarity=0.166 Sum_probs=130.3
Q ss_pred CCceEEecCCCceeeeeE-----EEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeCCcc
Q 001391 4 KDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHGIR 67 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~-----~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~~~~ 67 (1088)
+.+.|.|..+++..|-|. -+..+ || ++.+.+.+ ...|.+||.+|-.....+..+.+.+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~s--pd----gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALS--PD----GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE---TT----SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred ceEEEEECCCCcEEEEeecccCCceeEC--CC----CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 368899999999777765 46778 88 77777532 1479999999999888887754322
Q ss_pred eEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
...+... .......|+ +.+.+.. ..+|.|.|+... +.+..+.- .+ |.-.-|.
T Consensus 91 ~~~~~~~-~~~~ls~dg----k~~~V~N~TPa~SVtVVDl~~~---------------kvv~ei~~-PG---C~~iyP~- 145 (342)
T PF06433_consen 91 AQVVPYK-NMFALSADG----KFLYVQNFTPATSVTVVDLAAK---------------KVVGEIDT-PG---CWLIYPS- 145 (342)
T ss_dssp --BS--G-GGEEE-TTS----SEEEEEEESSSEEEEEEETTTT---------------EEEEEEEG-TS---EEEEEEE-
T ss_pred heecccc-cceEEccCC----cEEEEEccCCCCeEEEEECCCC---------------ceeeeecC-CC---EEEEEec-
Confidence 2221111 000001343 2222222 344555554421 22222211 11 2222341
Q ss_pred CCCCEEEEEEcCCcEEEEEcC-CCceEEEe---ccCCceeEEE-EeeecCCCCCcEEEEEecCCeEEEEEeccCccccCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDIS-NSSIILEV---HSPERCLLYS-MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~-~~~~~~~~---~~~~~~~~~s-~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
..+.+.+-+.||.+.-..+. .|+...+. ..+....++. -.+ ...+..++--+..|.|+--|+........
T Consensus 146 -~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~---~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~- 220 (342)
T PF06433_consen 146 -GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY---SRDGGRLYFVSYEGNVYSADLSGDSAKFG- 220 (342)
T ss_dssp -ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE---ETTTTEEEEEBTTSEEEEEEETTSSEEEE-
T ss_pred -CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce---ECCCCeEEEEecCCEEEEEeccCCccccc-
Confidence 22346677889999999987 45544221 1222222221 111 12233344456778888888762111000
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE---C-----C--CcEEEEEcCCCc
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---D-----D--RSARIWEVRAEY 289 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s---~-----D--g~v~iWd~~~~~ 289 (1088)
..+.+.... ....-.+ .+.-.-+++++..+.|..-- . | ..|.++|+.++
T Consensus 221 ---------------~~~~~~t~~-e~~~~Wr----PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~- 279 (342)
T PF06433_consen 221 ---------------KPWSLLTDA-EKADGWR----PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH- 279 (342)
T ss_dssp ---------------EEEESS-HH-HHHTTEE----E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-
T ss_pred ---------------CcccccCcc-ccccCcC----CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-
Confidence 000000000 0000000 01112244554443333211 1 2 14667777775
Q ss_pred ccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEE-eCCCcEEEEcC-CCceeEEEcccCC
Q 001391 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 290 ~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg-~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
+.+....+ ...+.++..+ ..+|+.. ..++.+.+||. +|+.+..+..-..
T Consensus 280 -------krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 280 -------KRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp -------EEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred -------eEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 33331122 2346788887 3466544 56899999999 8999888875443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.05 Score=41.06 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=28.7
Q ss_pred CceEEEEEeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 580 ~~~It~l~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
..+|.+++|||...+||+|+.+|.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.011 Score=67.57 Aligned_cols=203 Identities=17% Similarity=0.236 Sum_probs=120.7
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE-EEeccCCceeEEEEeeecCCCCCcEEEEEe----cCCeEEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIV 207 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~----~dg~I~v 207 (1088)
..+.|++..-. .+...++.|..+|.|-+-.+....-. .++..+....+.++++. +-|...||+|- .|..+.|
T Consensus 57 qy~kcva~~y~-~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwn--eLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 57 QYVKCVASFYG-NDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWN--ELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCceeehhhcC-CchhhhhhccccCceEEeecCCcccccceecccccccccccccc--cccHHHHHhhhhhhcccCCccc
Confidence 45677776651 13457899999999999887655433 33333333344455543 34667788874 4678999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
||+.+.-..|. ...... .+-......++|..+.+.+++|...+.+.++|++.
T Consensus 134 wdi~s~ltvPk---------------------------e~~~fs-~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 134 WDINSLLTVPK---------------------------ESPLFS-SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred eecccccCCCc---------------------------cccccc-cccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 99983211111 111110 01334455888888889999999999999999984
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEE---CCCEEEEEeCCCcEEEEcC---CCceeEEEcccCC---CCeEEEEEcC
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCL---TDSFIITAGEDCTCRVWGS---DGKQLKMIKEHIG---RGIWRCLYDS 358 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~---~~~~l~sg~~Dg~i~vWd~---~~~~~~~~~~h~~---~~V~~l~~~~ 358 (1088)
... ....+ .+..+..+.. .++++++-. ||.|.+||. -..++..+..... +.+..++|.|
T Consensus 186 s~~----~~~sv-------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 186 SLD----SVSSV-------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhh----hhhhh-------hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 211 01111 1122333333 467877766 999999994 1223332221111 1388999998
Q ss_pred CCC-EEEEEeCC-CCEEEEEcC
Q 001391 359 LSS-LLVTAGFD-SAIKVHQFQ 378 (1088)
Q Consensus 359 dg~-~l~tg~~D-g~I~iwd~~ 378 (1088)
... ++++..+| ++|+++++.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 643 45555554 789999884
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.51 E-value=4.8 Score=49.83 Aligned_cols=121 Identities=23% Similarity=0.268 Sum_probs=77.1
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEe--e--------------------eCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQ--V--------------------FHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~--~--------------------~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+-|+++.|+.+.+||-..... .+.. . +-...|+.|.++ |+| .+++.
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n-------~~g----~~lal 101 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLN-------PTG----SLLAL 101 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEEC-------CCC----CEEEE
Confidence 678888889999999654322 1111 0 112346777777 888 79999
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCc-ccccccee--e---eccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPE-TCVNLSLV--Q---SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~-~~~~~~~~--~---~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
+|...|.|-.+.........|... ..+..+.. . ....+...|..+.|+|.+.++..|++-..|+++|+||+...
T Consensus 102 ~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 102 VGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 999999999886432111112110 01111111 0 11234568999999997666788999999999999999754
Q ss_pred c
Q 001391 168 S 168 (1088)
Q Consensus 168 ~ 168 (1088)
.
T Consensus 182 ~ 182 (717)
T PF10168_consen 182 Q 182 (717)
T ss_pred C
Confidence 3
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.40 E-value=12 Score=42.74 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=42.1
Q ss_pred CCEEEEE----------eCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEe
Q 001391 35 LPFLLAG----------SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFEL 104 (1088)
Q Consensus 35 ~~~laag----------~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l 104 (1088)
+++++.. ..+.+.|||+.+++....... ...+....|| |+| ..++...++.|.++++
T Consensus 4 ~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~s-------P~g----~~~~~v~~~nly~~~~ 70 (353)
T PF00930_consen 4 GKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWS-------PDG----KYIAFVRDNNLYLRDL 70 (353)
T ss_dssp SSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE--------SSS----TEEEEEETTEEEEESS
T ss_pred CCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceee-------cCC----CeeEEEecCceEEEEC
Confidence 7777763 236899999999866543333 2368899999 888 6777777899999987
Q ss_pred cc
Q 001391 105 NF 106 (1088)
Q Consensus 105 ~~ 106 (1088)
..
T Consensus 71 ~~ 72 (353)
T PF00930_consen 71 AT 72 (353)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.9 Score=50.79 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=35.8
Q ss_pred CCCEEEEEECC------CcEEEEEcCC-CcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC--cEEEEcC
Q 001391 267 CGSKLVSVSDD------RSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC--TCRVWGS 335 (1088)
Q Consensus 267 ~g~~l~s~s~D------g~v~iWd~~~-~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg--~i~vWd~ 335 (1088)
+++..+.|+.+ ..+..||..+ .+. ..+. .+.........+.+.+.+.++||.|+ ++-.||.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W------~~~~--~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW------ELIT--TTESRLSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCe------eEcc--ccCcccccceeEEECCEEEEEeeecceeehhhcCc
Confidence 45555666543 2467788887 444 2222 22223333445555688889999888 5666666
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.9 Score=49.22 Aligned_cols=122 Identities=9% Similarity=0.003 Sum_probs=81.5
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCCE-------EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC----cceEE
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGSK-------LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----ARVWD 313 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~~-------l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~----~~I~~ 313 (1088)
.++.+...+-|.. |.-+.+.|+.+. -+.|-.|..|.-||.+-... ..+. ...+|. ....|
T Consensus 365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------~kl~--~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------NKLA--VVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------ceee--eeeccccccccccce
Confidence 5666666665555 777777776532 23455677888899875322 1221 333332 23455
Q ss_pred EEEC-CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 314 CCLT-DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 314 v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.+-. ..+|+.|+.+|.||+||..++..++ +.+... +|..+..+.+|++|+..+ +..+.+-+.
T Consensus 436 ~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeecCCceEEEeecCCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 5554 6899999999999999996665555 555544 899999999999877655 556777765
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=3 Score=50.62 Aligned_cols=220 Identities=12% Similarity=0.035 Sum_probs=113.8
Q ss_pred CCEEEEEe-C------CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-C------CEEE
Q 001391 35 LPFLLAGS-G------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E------KRVK 100 (1088)
Q Consensus 35 ~~~laag~-d------~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d------~~v~ 100 (1088)
+.+++.|+ . ..+..||..+++......-.....-+++++. .+ .+.+++| + +++-
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-------~~-----~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-------NG-----KLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-------CC-----EEEEEccccCCCcccceEE
Confidence 45666654 3 4788999988754433332233235666665 33 5666666 4 3455
Q ss_pred EEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCc-----EEEEEcCCCceEEEecc
Q 001391 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS-----IRVWDISNSSIILEVHS 175 (1088)
Q Consensus 101 iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~-----V~iWd~~~~~~~~~~~~ 175 (1088)
.||..... +..+..+...........+ +|.+-|+||.||. |..||..+.+.-.....
T Consensus 353 ~YD~~~~~-------------W~~~a~M~~~R~~~~v~~l-----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 353 RYDPRTNQ-------------WTPVAPMNTKRSDFGVAVL-----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred EecCCCCc-------------eeccCCccCccccceeEEE-----CCEEEEEeccccccccccEEEecCCCCcccccCCC
Confidence 56655432 3334444433333333333 7788899998874 77788876654332221
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCC------eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYN------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg------~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
...-....++. -++.+.+.|+.++ ++..||..++. |.. ..++
T Consensus 415 ~~~r~~~gv~~----~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------------------------W~~---~~~M 462 (571)
T KOG4441|consen 415 LTRRSGHGVAV----LGGKLYIIGGGDGSSNCLNSVECYDPETNT-------------------------WTL---IAPM 462 (571)
T ss_pred CcceeeeEEEE----ECCEEEEEcCcCCCccccceEEEEcCCCCc-------------------------eee---cCCc
Confidence 21111122221 3577777777554 35566665221 110 0111
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEE
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA 324 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg 324 (1088)
..-+.+-+ ++. -++...+.|+.|+ +|..+|..+.+. ..+. .+......+..+...+...+.|
T Consensus 463 ~~~R~~~g----~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W------~~v~--~m~~~rs~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 463 NTRRSGFG----VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW------TMVA--PMTSPRSAVGVVVLGGKLYAVG 529 (571)
T ss_pred ccccccce----EEE-ECCEEEEECCccCCCccceEEEEcCCCCce------eEcc--cCccccccccEEEECCEEEEEe
Confidence 11111111 221 2456667777665 367788877654 2221 2333344455566667888888
Q ss_pred eCCCc
Q 001391 325 GEDCT 329 (1088)
Q Consensus 325 ~~Dg~ 329 (1088)
+.||.
T Consensus 530 G~~~~ 534 (571)
T KOG4441|consen 530 GFDGN 534 (571)
T ss_pred cccCc
Confidence 87764
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.5 Score=51.35 Aligned_cols=63 Identities=3% Similarity=0.089 Sum_probs=34.1
Q ss_pred EEECCCEEEEEeCCC------cEEEEcCCC-ceeE---EEcccCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEEcCC
Q 001391 314 CCLTDSFIITAGEDC------TCRVWGSDG-KQLK---MIKEHIGRGIWRCLYDSLSSLLVTAGFDS--AIKVHQFQA 379 (1088)
Q Consensus 314 v~~~~~~l~sg~~Dg------~i~vWd~~~-~~~~---~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg--~I~iwd~~~ 379 (1088)
+.+.+...+.||.++ .+..||... ..-. .+..... ..+++. -++.+.++||.|| .+..||..+
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTIL-HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEE-ECCEEEEEeeecceeehhhcCccc
Confidence 344566677777542 356788743 2222 2222221 122222 2678889999888 566666643
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.76 E-value=17 Score=42.28 Aligned_cols=67 Identities=9% Similarity=0.059 Sum_probs=40.7
Q ss_pred cceEEEEEC--CCEEEEEeCCCcEEEEcCC-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 309 ARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 309 ~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++..++++ +++++.-..+|.+.+...+ .+.+..+..........+.|.-+...++.- ...+.+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~ 286 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP 286 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence 568888888 6788888999999988873 234444443322245677776654332222 334555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=93.71 E-value=21 Score=43.09 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=25.6
Q ss_pred CCCEEEEEeCCCcEEEEcC-CCceeEEEcccC
Q 001391 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1088)
Q Consensus 317 ~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~ 347 (1088)
.+.+++.+..||.++.+|. +|+++..++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 3667888888999999999 899998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.37 E-value=14 Score=40.20 Aligned_cols=147 Identities=11% Similarity=-0.023 Sum_probs=84.5
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
.+..|+.|+.+| +.+++... ........ +...|..+...|+-+.+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~--------------------------------~~~~~~i~--~~~~I~ql~vl~~~~~l 50 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSD--------------------------------PSKPTRIL--KLSSITQLSVLPELNLL 50 (275)
T ss_pred CCCEEEEEECCC-EEEEEecC--------------------------------CccceeEe--ecceEEEEEEecccCEE
Confidence 467888999998 88888830 11111111 22339999999988887
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeec----eeeeccCcceEEEE----ECCCEEEEEeCCCcEEEEcCCC------
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGS----SVLYGHNARVWDCC----LTDSFIITAGEDCTCRVWGSDG------ 337 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~----~~~~~h~~~I~~v~----~~~~~l~sg~~Dg~i~vWd~~~------ 337 (1088)
+.-++ +.+.++++..-............. .........+...+ ..+...+......+|.+|....
T Consensus 51 lvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 51 LVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS 129 (275)
T ss_pred EEEcC-CccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc
Confidence 77654 999999998754311100000000 00112223344444 1133444444455888888722
Q ss_pred ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 338 ~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..+.+.-.. .+.+++|. ++.|+.|..+ .+.+.|+.+
T Consensus 130 ~~~ke~~lp~--~~~~i~~~--~~~i~v~~~~-~f~~idl~~ 166 (275)
T PF00780_consen 130 KLLKEISLPD--PPSSIAFL--GNKICVGTSK-GFYLIDLNT 166 (275)
T ss_pred ceeEEEEcCC--CcEEEEEe--CCEEEEEeCC-ceEEEecCC
Confidence 3455555443 58899998 3457776655 478888864
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.22 Score=50.67 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEE-eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~-~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
-+..+++|+.+|.|.+|+....-.... .......+.. .++...++.+..++..+|.|+.|+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~---~Ip~~~~~~~~c~~~~dg~ir~~n~~------------- 132 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL---GIPNGRDSSLGCVGAQDGRIRACNIK------------- 132 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhccccccee---ccccccccceeEEeccCCceeeeccc-------------
Confidence 445788999999999998862211111 1111111111 11123456788999999999999998
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCC-CCEEEEEEcCCCCEEEEE--ECCCcEEEEEcCCC
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAE 288 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~v~~sp~g~~l~s~--s~Dg~v~iWd~~~~ 288 (1088)
..+.+....+|+ .++.....+..+++++++ |.|..++.|++..-
T Consensus 133 --------------------p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 133 --------------------PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred --------------------cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 555666666777 555555556666677776 77777888877653
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.3 Score=56.48 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=60.7
Q ss_pred cceEEEEECC--CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeE-EEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 309 ARVWDCCLTD--SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIW-RCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 309 ~~I~~v~~~~--~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~-~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..|--+.|+| .++|++.++|.+.+..++-+.+.++.-|.. .++ +++|.|||++|+.|-.||+|+++|...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~-~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGE-NVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCC-ccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 4566777875 689999999999999998888999887766 566 999999999999999999999999954
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.08 E-value=6.4 Score=47.12 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=41.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~ 106 (1088)
..|+||++ +|+++.++.-.++ ++-++.|+ .+. .++++..+|++.+|++..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs-------~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWS-------DDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-Ceeeeccc-------CCc----eEEEEeccceEEEeecch
Confidence 67999995 5888888776666 79999998 553 788889999999999874
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.98 E-value=11 Score=41.74 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=26.8
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDIS 165 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~ 165 (1088)
.++.+..|-..-+.|+|+| |++.|+.+-. .+.|.-|++.
T Consensus 154 ~~~l~~~~~~~~NGla~Sp---Dg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSP---DGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EEEeecCcEEecCceEECC---CCCEEEEEeCCCCeEEEEecC
Confidence 3344444445567899999 9988877744 4778887775
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.98 E-value=32 Score=43.13 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=58.5
Q ss_pred CeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCC
Q 001391 485 DWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS 564 (1088)
Q Consensus 485 ~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~ 564 (1088)
+.+.+| ....+++|++...++.++...+. +...+......+..+++|+....+..+..+... +.
T Consensus 946 ~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~---------~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~--n~---- 1009 (1205)
T KOG1898|consen 946 GRVLAG-VGRFLRLYDLGKKKLLRKCELKF---------IPNRISSIQTYGARIVVGDIQESVHFVRYRRED--NQ---- 1009 (1205)
T ss_pred CEEEEe-cccEEEEeeCChHHHHhhhhhcc---------CceEEEEEeecceEEEEeeccceEEEEEEecCC--Ce----
Confidence 444444 44689999998877665544332 111122233456677777766666554433211 00
Q ss_pred cccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 565 KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 565 ~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
+..-....-...|+++.+- |...+|.|++-|++.+-.++..
T Consensus 1010 ------l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1010 ------LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ------EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 1111111223345665444 5567889999999999887754
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=19 Score=39.85 Aligned_cols=118 Identities=10% Similarity=-0.068 Sum_probs=69.5
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEE
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~ 322 (1088)
+.....+.+|-..-++|+||||++.+..+ +..+.|.-|++........ .+... .......+..-.++.. +.+-+
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~--~~~~~-~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG--GRRGF-VDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC--CcceE-EEccCCCCCCCceEEeCCCCEEE
Confidence 44455555556667889999999876655 4457777777763111000 01100 1222233444455555 44544
Q ss_pred EEeCCC-cEEEEcCCCceeEEEcccCCCCeEEEEEc-CCCCEEEEEe
Q 001391 323 TAGEDC-TCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAG 367 (1088)
Q Consensus 323 sg~~Dg-~i~vWd~~~~~~~~~~~h~~~~V~~l~~~-~dg~~l~tg~ 367 (1088)
++..+| .|.+|+.+|+++..+..... .+++++|- ++.+.|...+
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 444443 89999999999999887755 58888884 4555444333
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=10 Score=46.05 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=61.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEc---CCCcccCCCCceeeeceeee-ccCcceEEEEEC-CCEEEEEeCCCc
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEV---RAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLT-DSFIITAGEDCT 329 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~---~~~~~~~~~~~~~i~~~~~~-~h~~~I~~v~~~-~~~l~sg~~Dg~ 329 (1088)
..+.|..+.|+|||.+++... ++.|.+=-+ ..+. .+...+..+. +-...+.++.|. +..|+.+..++.
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~------~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~ 518 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ------YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE 518 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc------eeecccEEeecccCCccccceEecCCEEEEEecCCC
Confidence 356799999999999987766 467766333 2221 1111111121 222335778887 555667666666
Q ss_pred EEEEcC--CCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 330 CRVWGS--DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 330 i~vWd~--~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
-.+|.+ +|.....+.. ... ++.+++-+++ .++....+|.
T Consensus 519 ~~v~~v~vDG~~~~~~~~~n~~~-~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 519 HPVWYVNLDGSNSDALPSRNLSA-PVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred CceEEEecCCccccccCCCCccC-ceEEEecCCc--eEEEEcCCce
Confidence 666665 6655443332 133 5778877763 3555566663
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.7 Score=53.61 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=55.4
Q ss_pred CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEE-EEEEcCCC
Q 001391 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEWSSCG 268 (1088)
Q Consensus 190 s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~-~v~~sp~g 268 (1088)
+|.-.++|.++.+|.|.+..+. -+.+..+.-|...++ +++|.|||
T Consensus 29 nP~~dLiA~~t~~gelli~R~n----------------------------------~qRlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 29 NPKMDLIATRTEKGELLIHRLN----------------------------------WQRLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cCccchhheeccCCcEEEEEec----------------------------------cceeEeccCCCCccceeeeecCCC
Confidence 5777899999999999998876 344556665666666 99999999
Q ss_pred CEEEEEECCCcEEEEEcCCCc
Q 001391 269 SKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
+.++.|-.||+|++.|+.++.
T Consensus 75 kllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred CEEEEEecCCeEEEEEccCCC
Confidence 999999999999999999864
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.37 E-value=23 Score=39.93 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=41.6
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEE
Q 001391 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (1088)
Q Consensus 533 ~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~ 605 (1088)
..|.++++.-..+.|....++.... ..-...+......+++.+++.|||.+.++-+.+|.|+
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGS-----------VTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEE-----------EEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCC-----------ccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3677888777777888777753321 1111222234566899999999999999999999875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.25 E-value=24 Score=39.88 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=45.7
Q ss_pred CEEEEEe-C--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~-d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
++|.++. + ..+.+.|+.+++...--.+ .+....+...+ |+++ .++-+..+++++-.|+++..
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg-~g~~~~g~~~s-------~~~~---~~~Yv~~~~~l~~vdL~T~e---- 113 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDG-PGDNTFGGFLS-------PDDR---ALYYVKNGRSLRRVDLDTLE---- 113 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---S-S-B-TTT-EE--------TTSS---EEEEEETTTEEEEEETTT------
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccC-CCCCccceEEe-------cCCC---eEEEEECCCeEEEEECCcCc----
Confidence 5555555 3 6899999999876544333 33335566777 5541 44455667888888887532
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
....+....+++-...+... .|+..++
T Consensus 114 -----------~~~vy~~p~~~~g~gt~v~n-~d~t~~~ 140 (386)
T PF14583_consen 114 -----------ERVVYEVPDDWKGYGTWVAN-SDCTKLV 140 (386)
T ss_dssp -----------EEEEEE--TTEEEEEEEEE--TTSSEEE
T ss_pred -----------EEEEEECCcccccccceeeC-CCccEEE
Confidence 22334445677766777542 2555543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.049 Score=62.57 Aligned_cols=181 Identities=13% Similarity=0.136 Sum_probs=108.5
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE----cCCcEEEEEcCCCce-
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC----SDNSIRVWDISNSSI- 169 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs----~Dg~V~iWd~~~~~~- 169 (1088)
.+|.|.+-.+..... .-.-..++|....++++|++. |...||.|- .|-.+.|||+.++-.
T Consensus 78 atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltv 142 (783)
T KOG1008|consen 78 ATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTV 142 (783)
T ss_pred ccCceEEeecCCccc-------------ccceecccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCC
Confidence 378888888775431 111233577888999999984 556777763 366799999987722
Q ss_pred ---EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 170 ---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 170 ---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
...+.........++++ ..+..+|.+|.....+.++|++.
T Consensus 143 Pke~~~fs~~~l~gqns~cw---lrd~klvlaGm~sr~~~ifdlRq---------------------------------- 185 (783)
T KOG1008|consen 143 PKESPLFSSSTLDGQNSVCW---LRDTKLVLAGMTSRSVHIFDLRQ---------------------------------- 185 (783)
T ss_pred CccccccccccccCcccccc---ccCcchhhcccccchhhhhhhhh----------------------------------
Confidence 11111111111113333 25677888888888999999871
Q ss_pred eeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEc-CCCcccCCCCceeeece--eeeccCcceEEEEEC---CC
Q 001391 247 VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEVGSS--VLYGHNARVWDCCLT---DS 319 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~i~~~--~~~~h~~~I~~v~~~---~~ 319 (1088)
.......-.+..+.++...| .+.++++-+ |+.|-+||. .+-+ .++... .......++..++|. ..
T Consensus 186 s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-------npl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 186 SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-------NPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc-------cHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 00111111234566788888 667777766 899999994 2211 111100 111112357888887 46
Q ss_pred EEEEEeCC-CcEEEEcC
Q 001391 320 FIITAGED-CTCRVWGS 335 (1088)
Q Consensus 320 ~l~sg~~D-g~i~vWd~ 335 (1088)
++++...| ++|+.+++
T Consensus 258 lla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDI 274 (783)
T ss_pred hhhhhccCcceEEEecc
Confidence 67777665 78999997
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.78 E-value=8.7 Score=46.68 Aligned_cols=215 Identities=14% Similarity=0.170 Sum_probs=107.3
Q ss_pred eEEEEEC-C------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC-----
Q 001391 89 FEVALFG-E------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----- 156 (1088)
Q Consensus 89 ~~la~~g-d------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D----- 156 (1088)
.+++++| . ..+..+|..... ......+.. ...-.++++. ++...++||.|
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~-------------w~~~a~m~~-~r~~~~~~~~----~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNE-------------WSSLAPMPS-PRCRVGVAVL----NGKLYVVGGYDSGSDR 347 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCc-------------EeecCCCCc-ccccccEEEE----CCEEEEEccccCCCcc
Confidence 5666665 2 457777776542 333333332 2224455554 56788889888
Q ss_pred -CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe-----EEEEEeccCccccCCCCCCCccCCCC
Q 001391 157 -NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE-----IIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 157 -g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~-----I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
.++..||..+.+......-...-...+++. -++.+.|.|+.||. +-.||..+++
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~---------------- 407 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNK---------------- 407 (571)
T ss_pred cceEEEecCCCCceeccCCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCc----------------
Confidence 357788887776544222222111222222 35778888888865 4455554111
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEE-cCCCCEEEEEECCC------cEEEEEcCCCcccCCCCceeeecee
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW-SSCGSKLVSVSDDR------SARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~-sp~g~~l~s~s~Dg------~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
|.. +..+. ....+.+. .-+|...+.|+.++ ++..||..++.. ..+. .
T Consensus 408 ---------W~~------va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W------~~~~--~ 461 (571)
T KOG4441|consen 408 ---------WTP------VAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW------TLIA--P 461 (571)
T ss_pred ---------ccc------cCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce------eecC--C
Confidence 111 11111 11111111 12566677777553 567788887655 2221 1
Q ss_pred eeccCcceEEEEECCCEEEEEeCCCc-----EEEEcCCCceeEEEc---ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 304 LYGHNARVWDCCLTDSFIITAGEDCT-----CRVWGSDGKQLKMIK---EHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~~~~l~sg~~Dg~-----i~vWd~~~~~~~~~~---~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+..-......+.+.+.+.+.||.|+. +..+|.....-..+. .... .+ .++. -++.+.+.||.||
T Consensus 462 M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs-~~-g~~~-~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 462 MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS-AV-GVVV-LGGKLYAVGGFDG 533 (571)
T ss_pred cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc-cc-cEEE-ECCEEEEEecccC
Confidence 11111222244445778888888873 566777433333222 1221 12 2222 2456677888775
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.31 E-value=34 Score=39.85 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=79.1
Q ss_pred eEEecCCCce---eeeeEEEEEeccCCCCCCCCEEEEEe--C----CeEEEEECCCCeeEEEEeeeCCcceEEEEecccc
Q 001391 7 SEWRLDVGQY---LGEISALCFVHLPSHLSSLPFLLAGS--G----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77 (1088)
Q Consensus 7 ~iWdl~~g~~---~~~V~~v~fs~~pd~~~~~~~laag~--d----~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~ 77 (1088)
.|.|+..... .-.+...++| || +++||-+. + ..|+|+|+++|+.+...- ....-..+.|.
T Consensus 110 vllD~n~l~~~~~~~~~~~~~~S--pd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~--- 178 (414)
T PF02897_consen 110 VLLDPNELAKDGGYVSLGGFSVS--PD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWS--- 178 (414)
T ss_dssp EEEEGGGGSTTSS-EEEEEEEET--TT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEEC---
T ss_pred EEEcchHhhccCceEEeeeeeEC--CC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEe---
Confidence 4556554432 2244567889 99 88888764 2 469999999998765321 11112338888
Q ss_pred cccCCCccceeeEEEEE-CC----------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 78 CTEGSVSTRVTFEVALF-GE----------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 78 ~~~~~d~~~~~~~la~~-gd----------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
+|++ .++.+. .+ ..|..|++.+... .-.++.......-+...+..++ |
T Consensus 179 ----~d~~---~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-----------~d~lvfe~~~~~~~~~~~~~s~---d 237 (414)
T PF02897_consen 179 ----DDGK---GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-----------EDELVFEEPDEPFWFVSVSRSK---D 237 (414)
T ss_dssp ----TTSS---EEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-----------G-EEEEC-TTCTTSEEEEEE-T---T
T ss_pred ----CCCC---EEEEEEeCcccccccCCCCcEEEEEECCCChH-----------hCeeEEeecCCCcEEEEEEecC---c
Confidence 6763 444443 22 2356666654320 0123333333333467888888 9
Q ss_pred CCEEEEEEc---C-CcEEEEEcCCC----ceEEEeccCCceeEEEEe
Q 001391 147 NRSLAIGCS---D-NSIRVWDISNS----SIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 147 ~~~lasgs~---D-g~V~iWd~~~~----~~~~~~~~~~~~~~~s~~ 185 (1088)
+++|+.... + ..+.+.++..+ .....+..+.....+.+.
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 998766433 2 34777787764 234444444444444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.14 E-value=32 Score=39.58 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=116.2
Q ss_pred EEEEeccCCCCCCCCEEEE--EeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC--CC
Q 001391 22 ALCFVHLPSHLSSLPFLLA--GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EK 97 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laa--g~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g--d~ 97 (1088)
.++++ ++ +..+.+ ..+..|.+.|..+.+.++...... .-++++++ ++++ ..+++-.+ ++
T Consensus 78 ~i~v~--~~----~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~-------~~~~--~vYV~n~~~~~~ 140 (381)
T COG3391 78 GVAVN--PA----GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVD-------PDGK--YVYVANAGNGNN 140 (381)
T ss_pred ceeeC--CC----CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEEC-------CCCC--EEEEEecccCCc
Confidence 56666 66 443333 335999999988888888877644 46889998 6663 13333342 56
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEE-E---
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIIL-E--- 172 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~-~--- 172 (1088)
++.+.|-.+. +.......-..+ ..+++.| +++.+++. ..++.|.+.|........ .
T Consensus 141 ~vsvid~~t~---------------~~~~~~~vG~~P-~~~a~~p---~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~ 201 (381)
T COG3391 141 TVSVIDAATN---------------KVTATIPVGNTP-TGVAVDP---DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGS 201 (381)
T ss_pred eEEEEeCCCC---------------eEEEEEecCCCc-ceEEECC---CCCeEEEEecCCCeEEEEeCCCcceecccccc
Confidence 7777766542 233332222233 8899999 99866655 478999999977665553 1
Q ss_pred -eccCCceeEEEEeeecCCCCCcEEEEEecC---CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 173 -VHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 173 -~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
...... -+.+.+ ++++..+...... +.+...|.. ....
T Consensus 202 ~~~~~~~--P~~i~v---~~~g~~~yV~~~~~~~~~v~~id~~---------------------------------~~~v 243 (381)
T COG3391 202 LVGVGTG--PAGIAV---DPDGNRVYVANDGSGSNNVLKIDTA---------------------------------TGNV 243 (381)
T ss_pred ccccCCC--CceEEE---CCCCCEEEEEeccCCCceEEEEeCC---------------------------------CceE
Confidence 111111 111222 4677755554333 477777766 2222
Q ss_pred eEE--EeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCc
Q 001391 249 LFR--LVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEY 289 (1088)
Q Consensus 249 ~~~--~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~ 289 (1088)
... ..+-. ....+..+|+|+.+.... ..+.+.+-|..+..
T Consensus 244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 244 TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 222 11222 567789999999887764 44788888877743
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=90.90 E-value=27 Score=37.95 Aligned_cols=253 Identities=12% Similarity=0.105 Sum_probs=120.9
Q ss_pred CCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
+..|+.|++ | |.+|+.+.......... ...|..+... ++- ..+++-.|+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl-------~~~----~~llvLsd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVL-------PEL----NLLLVLSDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEe-------ccc----CEEEEEcCCccEEEEchhhcccccc
Confidence 678888885 6 99999943332222222 1248999988 443 3444445699999999853311100
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-----ceEEEeccCCceeEEEEeeec
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-----~~~~~~~~~~~~~~~s~~~~~ 188 (1088)
... .................+...+..........|+++ ..+.|.+|..... +...++..+. ...++.+.
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~--~~~~i~~~- 147 (275)
T PF00780_consen 73 APL-AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPD--PPSSIAFL- 147 (275)
T ss_pred ccc-cccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCC--CcEEEEEe-
Confidence 000 000000000011122334444411111133455554 4568998887653 3455555553 34455553
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
+..++.|.. ....+.|+.+....... ........+........++..+.. +++
T Consensus 148 ----~~~i~v~~~-~~f~~idl~~~~~~~l~---------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (275)
T PF00780_consen 148 ----GNKICVGTS-KGFYLIDLNTGSPSELL---------------------DPSDSSSSFKSRNSSSKPLGIFQL-SDN 200 (275)
T ss_pred ----CCEEEEEeC-CceEEEecCCCCceEEe---------------------CccCCcchhhhcccCCCceEEEEe-CCc
Confidence 456666654 34667777632211100 000000000001111222333333 345
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEccc
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h 346 (1088)
.+|++. |..-.+-|...... + . ....-...+.++++...+|+..+.+ .|-||++ +++.++.+...
T Consensus 201 e~Ll~~--~~~g~fv~~~G~~~------r--~--~~i~W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 201 EFLLCY--DNIGVFVNKNGEPS------R--K--STIQWSSAPQSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred eEEEEe--cceEEEEcCCCCcC------c--c--cEEEcCCchhEEEEECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 666543 33344445443211 1 1 1111223566777777777777665 4999999 88888887654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.76 Score=34.73 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
...|.+++|+| ..++||.|..||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP---TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC---CCCEEEEEECCCeEEEEEC-CCc
Confidence 35699999999 9999999999999999998 443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.92 E-value=20 Score=38.11 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=75.9
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCc-EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-----CCeEEE
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIV 207 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~-V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-----dg~I~v 207 (1088)
+-..|+|+|. ....++.+-.-|+ ..++|....+....+...+.-..|.--. +++||.+|++.-. .|.|-|
T Consensus 69 R~Hgi~~~p~--~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGv--fs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 69 RGHGIAFHPA--LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGV--FSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred ccCCeecCCC--CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccc--cCCCCcEEEeecCCCCCCCceEEE
Confidence 3456888882 3345666666665 5689999888877776665544544322 3688998887543 377889
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
||.+ ...+.+.++..|.-....+.+.+||+.++.+..
T Consensus 145 Yd~r--------------------------------~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 145 YDAR--------------------------------EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred Eecc--------------------------------cccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 9987 245667788888888899999999999887643
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.90 E-value=1 Score=46.06 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=65.9
Q ss_pred CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
+..++.|+.+|.|.+|+...... ... ....-...|.++-.. +.+..+++.||.||.|+. .++.+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~-------~~d--~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA-------HSD--RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccch-------HHH--hhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 46789999999999998873211 000 111111223332222 358899999999999999 66777666
Q ss_pred cccCCCCeEEEEEcCCCCEEEEE--eCCCCEEEEEcC
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQ 378 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg--~~Dg~I~iwd~~ 378 (1088)
..|...++..+..+..+..|+.. +.|..++.|++.
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 66764456666666666666666 777777777773
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.2 Score=51.38 Aligned_cols=100 Identities=18% Similarity=0.288 Sum_probs=66.2
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
++++++.+.+-..|+... +.+...-..-..+|.+++|+. +|..++.|-.+|.|.+||+..++.
T Consensus 102 ivi~Ts~ghvl~~d~~~n--------------L~~~~~ne~v~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGN--------------LGPLHQNERVQGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred EEEEcCchhhhhhhhhcc--------------cchhhcCCccCCcceeeEecC---CCceeccccCCCcEEEEEccCCcc
Confidence 334444577777776631 111122223347899999999 999999999999999999999888
Q ss_pred EEEecc---CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 170 ILEVHS---PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 170 ~~~~~~---~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
++.+.. +...++..... .++..+.++..-|. +|.+..
T Consensus 165 l~~i~e~~ap~t~vi~v~~t----~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 165 LKVITEHGAPVTGVIFVGRT----SQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eeeeeecCCccceEEEEEEe----CCCcEEEEccCCCc--eEEEEe
Confidence 776653 33444443332 33447888777776 777653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.5 Score=54.13 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=56.1
Q ss_pred ccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeE-EEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 306 ~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~-~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.....+.+.+.-...++.|+..|.+...|.++..-. .-..+...+|++++|+.+|.+++.|-.+|.|.+||...
T Consensus 87 ~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 87 DIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred CCCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 344556666666778899999999999998664221 11223334899999999999999999999999999954
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.69 E-value=20 Score=39.40 Aligned_cols=155 Identities=9% Similarity=0.036 Sum_probs=77.6
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
.+.+..+..+ +| +++|+++.. ....-||.-...- ....-....+|..|.|+ |++ .+.....
T Consensus 144 ~gs~~~~~r~--~d----G~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~-------~~~----~lw~~~~ 205 (302)
T PF14870_consen 144 SGSINDITRS--SD----GRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFS-------PDG----NLWMLAR 205 (302)
T ss_dssp ---EEEEEE---TT----S-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE--------TTS-----EEEEET
T ss_pred cceeEeEEEC--CC----CcEEEEECcccEEEEecCCCccc-eEEccCccceehhceec-------CCC----CEEEEeC
Confidence 4678888888 88 899999995 5556787542211 11222234589999999 776 5666667
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
++.|+.=+..... +.+ .+.+..+..-.-.+.++++.+ ++...|+|+ .|+ .+...+.|+.-.+...
T Consensus 206 Gg~~~~s~~~~~~---~~w-------~~~~~~~~~~~~~~ld~a~~~---~~~~wa~gg-~G~-l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 206 GGQIQFSDDPDDG---ETW-------SEPIIPIKTNGYGILDLAYRP---PNEIWAVGG-SGT-LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp TTEEEEEE-TTEE---EEE----------B-TTSS--S-EEEEEESS---SS-EEEEES-TT--EEEESSTTSS-EE-GG
T ss_pred CcEEEEccCCCCc---ccc-------ccccCCcccCceeeEEEEecC---CCCEEEEeC-Ccc-EEEeCCCCccceECcc
Confidence 8888887722110 000 011111112223489999998 877777665 443 3445566666555543
Q ss_pred --CCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 176 --PERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 176 --~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
+....+|.+.|.. ...-.+-+.+|.|.-|
T Consensus 271 ~~~~~~n~~~i~f~~----~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 271 GENVPSNLYRIVFVN----PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp GTTSSS---EEEEEE----TTEEEEE-STTEEEEE
T ss_pred ccCCCCceEEEEEcC----CCceEEECCCcEEEEe
Confidence 4455678887742 2333444567777655
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.21 E-value=50 Score=38.46 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=97.2
Q ss_pred EEEEEEcCCCCEEEEE-ECCC----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE-EEEeCC---
Q 001391 259 IFRIEWSSCGSKLVSV-SDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGED--- 327 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~-s~Dg----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~D--- 327 (1088)
+....++|+|++++-+ +..| .+++.|+.+++. +.. .+.. .....+.|. +..| .+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--------l~d-~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--------LPD-GIEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--------EEE-EEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--------cCC-cccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 4467899999988754 3333 599999999643 210 1111 112238887 3444 443322
Q ss_pred -------CcEEEEcC-CCce--eEEEcccCCCC-eEEEEEcCCCCEEEEEeCC-CC---EEEEEcCCCCCCcccCCcccc
Q 001391 328 -------CTCRVWGS-DGKQ--LKMIKEHIGRG-IWRCLYDSLSSLLVTAGFD-SA---IKVHQFQAFLPGSLESHPEAK 392 (1088)
Q Consensus 328 -------g~i~vWd~-~~~~--~~~~~~h~~~~-V~~l~~~~dg~~l~tg~~D-g~---I~iwd~~~~~~~~~~~~~~~~ 392 (1088)
..|+.|.+ ++.. ...+....... ...+..++|+++|+..... .. +.+.++.....
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~---------- 264 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS---------- 264 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT----------
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC----------
Confidence 23777777 3322 23444444422 5678889999987654433 22 44445532100
Q ss_pred ccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecC----CeEEEEEeccCCcceeEEeeeecC-Ccce
Q 001391 393 EFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH----GYLYHTKLCDMDSVNWNKILQVSE-GMPI 467 (1088)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~----g~i~~~~~~~~~~~~~~~~~~~~~-~~~i 467 (1088)
. ......+......+....-..++.+++.|+. +.|+.+++.+.....|..++-.+. ...+
T Consensus 265 ---~------------~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 265 ---P------------DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp ---S------------S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred ---C------------cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 0 0001111111112222222225577777654 457777776665555654433332 3355
Q ss_pred EEEecCCCCCCCcCCCCCeEEEecCCC--CEEEEEEc
Q 001391 468 ICMDLLSNEPKYPCGIDDWVALGDGKG--NMTIVRVV 502 (1088)
Q Consensus 468 ~~l~~~~~~~~~s~~~~~~la~g~~dg--~I~iw~~~ 502 (1088)
..+.+.. +.+++....++ .|+++++.
T Consensus 330 ~~~~~~~---------~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 330 EDVSLFK---------DYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEET---------TEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEEC---------CEEEEEEEECCccEEEEEECC
Confidence 5555532 24666666666 45666665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=89.04 E-value=50 Score=38.20 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=89.1
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc---C-
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS---S- 266 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s---p- 266 (1088)
.+...|+.|+..|.++|++....+..+ ...+. -..-+.+|..|..- +
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~----------------------------~~lll-E~~l~~PILqv~~G~F~s~ 85 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQP----------------------------EDLLL-ETQLKDPILQVECGKFVSG 85 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCC----------------------------ccEEE-EEecCCcEEEEEeccccCC
Confidence 345789999999999999986221111 11111 12234667766543 2
Q ss_pred CCCEEEEEECCCcEEEEEcCCCccc-CCCCceeeeceeeeccCcc--eEEEEE---C----CCEEEEEeCCCcEEEEcCC
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWK-DSDSIEEVGSSVLYGHNAR--VWDCCL---T----DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~-~~~~~~~i~~~~~~~h~~~--I~~v~~---~----~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.....+..=.-+.+.+|.+...... .....-.+. ..+.|.-. ...++. . ..+|..=+.||.+.+++-+
T Consensus 86 ~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~--~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe 163 (418)
T PF14727_consen 86 SEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLE--LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE 163 (418)
T ss_pred CCcceEEEecCCEEEEEEEEecCCCcccCcEEEEE--EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence 1222333345677888887432210 000011222 34444332 223332 2 2678889999999999986
Q ss_pred CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 337 GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 337 ~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.-....+-...- ---.++|.+....+++++.+..+..|...
T Consensus 164 ~~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 164 SFAFSRFLPDFL-LPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cEEEEEEcCCCC-CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 555433322211 12357788888889999999999999873
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.76 E-value=3.5 Score=47.08 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=77.7
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCC--E-----EEEEEcCCcEEEEEcCCC-c-eEEEeccCC--ceeEEEEeeecCC
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR--S-----LAIGCSDNSIRVWDISNS-S-IILEVHSPE--RCLLYSMKLWGDN 190 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~--~-----lasgs~Dg~V~iWd~~~~-~-~~~~~~~~~--~~~~~s~~~~~~s 190 (1088)
++.+....-|.+ |.-+.+.| +.+ . -+.|-.|+.|.-||.+-. . .+.-.+.+. +..-+++.. .
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~---d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a---T 438 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITP---DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA---T 438 (644)
T ss_pred ceeeeEeeccCC-cceeeccC---CcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceee---e
Confidence 556666666665 88888887 432 2 235777999999998632 2 222222221 111122111 1
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
...-+|++|+.+|.|++||-- ....-..+.+-..+|..|..+.+|++
T Consensus 439 T~sG~IvvgS~~GdIRLYdri---------------------------------~~~AKTAlPgLG~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 439 TESGYIVVGSLKGDIRLYDRI---------------------------------GRRAKTALPGLGDAIKHVDVTADGKW 485 (644)
T ss_pred cCCceEEEeecCCcEEeehhh---------------------------------hhhhhhcccccCCceeeEEeeccCcE
Confidence 234589999999999999964 22233346778899999999999999
Q ss_pred EEEEECCCcEEEEEcC
Q 001391 271 LVSVSDDRSARIWEVR 286 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~ 286 (1088)
++..+.. .+.+-++.
T Consensus 486 il~Tc~t-yLlLi~t~ 500 (644)
T KOG2395|consen 486 ILATCKT-YLLLIDTL 500 (644)
T ss_pred EEEeccc-EEEEEEEe
Confidence 8776654 56665543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=88.41 E-value=34 Score=40.29 Aligned_cols=121 Identities=16% Similarity=0.303 Sum_probs=65.9
Q ss_pred CcEEEEEEecccCCC--CEEEEEEcCCcEEEEEcC-----CCceEEEeccCCc---eeEEEEeeecCCCCCcEEEEEecC
Q 001391 133 HWVFDVCFLKVCNGN--RSLAIGCSDNSIRVWDIS-----NSSIILEVHSPER---CLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~--~~lasgs~Dg~V~iWd~~-----~~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
..|..+.|.|....+ .+||+ .-...|.+|.+. ..+.+....+..+ .++-.-+.| .|....|+.-+..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVW--HPk~~iL~VLT~~ 133 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVW--HPKKAILTVLTAR 133 (671)
T ss_pred ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccc--cCCCceEEEEecC
Confidence 458999999953322 25554 457889999985 2222222111111 011111122 2445555555554
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~ 281 (1088)
..-.+.++... ..+....+ ...+-|.|.+|.+||++|+.+-. .=.-+
T Consensus 134 dvSV~~sV~~d-------------------------------~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSy 181 (671)
T PF15390_consen 134 DVSVLPSVHCD-------------------------------SSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSY 181 (671)
T ss_pred ceeEeeeeeeC-------------------------------CceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEE
Confidence 44455565510 12222233 45688999999999998876533 34567
Q ss_pred EEEcCCC
Q 001391 282 IWEVRAE 288 (1088)
Q Consensus 282 iWd~~~~ 288 (1088)
+||-..+
T Consensus 182 iWd~~qK 188 (671)
T PF15390_consen 182 IWDSAQK 188 (671)
T ss_pred EecCchh
Confidence 8886553
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.91 E-value=7.2 Score=47.46 Aligned_cols=124 Identities=10% Similarity=0.094 Sum_probs=76.3
Q ss_pred CCeEEEEECCCCeEEEEecCCCCC----c-ccccCCcccceeeeeeeccccCceEEEEEee--eCCCEEEEEcCCCcEEE
Q 001391 534 GHRFIFTADPKGRLKLWQLCDPFS----S-VCYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVL 606 (1088)
Q Consensus 534 dg~~L~s~~~dg~i~vwd~~~~~~----~-~~~~~~~~~~~~l~~~~~~~h~~~It~l~~s--pdg~~LatGs~dg~I~I 606 (1088)
+...|+.+..||.|.+|.++.-.. . ...... .........|...-...+..+|+. ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-cccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 567888999999999997642110 0 000000 000111112333345578899998 88899999999999999
Q ss_pred EeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCc---eEEEEecCCCeEEEEEee
Q 001391 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEYD 670 (1088)
Q Consensus 607 w~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~---~~l~t~g~Dg~i~iw~~~ 670 (1088)
|-+..... +........ |. ..|-+|+|.....+. ..|+.++-.|.+-+|++.
T Consensus 192 Faf~l~~~---------r~~~~~s~~--~~-hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 192 FAFALVDE---------RFYHVPSHQ--HS-HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecccc---------ccccccccc--cc-cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 87764210 000000111 22 469999999765332 378889999999998884
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=87.51 E-value=44 Score=35.76 Aligned_cols=184 Identities=11% Similarity=0.067 Sum_probs=99.5
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
.....+.|.. ++.++-+.|.-| .|+.+|+.+++...+..-+..-..-.++.+ ++.+..-.=.++...+||.
T Consensus 45 aFTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEET
T ss_pred ccCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEcc
Confidence 4566788867 888888877766 799999999998877665544333333332 1222222335678888888
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
. +.+.+.++. ..+.=++++ .+++.|+.+.....++++|..+-+.
T Consensus 118 ~---------------------------------tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 118 N---------------------------------TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp T---------------------------------TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred c---------------------------------cceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 7 455555554 223445565 4666777776677899999876433
Q ss_pred cCCCCceeeeceeeeccCc---ceEEEEECCC-EEEEEeCCCcEEEEcC-CCceeEEEcc------------c--CCCCe
Q 001391 291 KDSDSIEEVGSSVLYGHNA---RVWDCCLTDS-FIITAGEDCTCRVWGS-DGKQLKMIKE------------H--IGRGI 351 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~---~I~~v~~~~~-~l~sg~~Dg~i~vWd~-~~~~~~~~~~------------h--~~~~V 351 (1088)
...+. ...... .+.-+.+-+. ..+=.-....|..-|. +|+....+.- + ...-.
T Consensus 162 -----~~~i~---V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 162 -----VRTIQ---VTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp -----EEEEE----EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred -----EEEEE---EEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 22222 222222 2344555433 3333334445555566 6665554311 0 12247
Q ss_pred EEEEEcCCCCEEEEEe
Q 001391 352 WRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~ 367 (1088)
..||+.|..+.|...|
T Consensus 234 NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EeEeEeCCCCEEEEEe
Confidence 8999998776555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=34 Score=38.53 Aligned_cols=157 Identities=9% Similarity=-0.052 Sum_probs=85.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
.+.+.++.+. |+ +.++++|..|.+..-.-..++.-..........+.++.+. +++ .+++++..
T Consensus 172 ~g~~~~i~~~--~~----g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~-------~~g----~~~~vg~~ 234 (334)
T PRK13684 172 AGVVRNLRRS--PD----GKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ-------PDG----NLWMLARG 234 (334)
T ss_pred cceEEEEEEC--CC----CeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEc-------CCC----CEEEEecC
Confidence 4678899999 88 7899888877665421122232222333344578999998 665 56666666
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeec-cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
+.+++=.-+... . .+.+..- ..-...+.++.+.| ++..+++ +.+|.+. .....++.-.....
T Consensus 235 G~~~~~s~d~G~----s--------W~~~~~~~~~~~~~l~~v~~~~---~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~ 297 (334)
T PRK13684 235 GQIRFNDPDDLE----S--------WSKPIIPEITNGYGYLDLAYRT---PGEIWAG-GGNGTLL-VSKDGGKTWEKDPV 297 (334)
T ss_pred CEEEEccCCCCC----c--------cccccCCccccccceeeEEEcC---CCCEEEE-cCCCeEE-EeCCCCCCCeECCc
Confidence 665422122111 1 1111110 11123578899988 7776554 4567554 34455554444332
Q ss_pred --CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 176 --PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 176 --~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
......+.+.+. ++......+..|.|..|+-.
T Consensus 298 ~~~~~~~~~~~~~~----~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 298 GEEVPSNFYKIVFL----DPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCCCCcceEEEEEe----CCCceEEECCCceEEEecCC
Confidence 222345666553 22344556678888877643
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=87.02 E-value=50 Score=35.85 Aligned_cols=249 Identities=14% Similarity=0.140 Sum_probs=126.1
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-----CCCcEEEEEEe
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-----LSHWVFDVCFL 141 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~I~~v~f~ 141 (1088)
.-++|+++ |.+. ..++..+.+...+||......++.. ..++-.+.. -....+.+.|+
T Consensus 24 N~WGia~~-------p~~~---~WVadngT~~~TlYdg~~~~~~g~~--------~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 24 NAWGLSYR-------PGGP---FWVANTGTGTATLYVGNPDTQPLVQ--------DPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred ccceeEec-------CCCC---EEEecCCcceEEeecCCcccccCCc--------cceEEEecCCCCCCCCCCccEEEEe
Confidence 35899999 5542 5555566799999998743322211 223333332 22457777776
Q ss_pred ccc-----CCC----CEEEEEEcCCcEEEEEcCCCce-----EEEeccCCceeEE-EEeeecCCCCCcEEEE-EecCCeE
Q 001391 142 KVC-----NGN----RSLAIGCSDNSIRVWDISNSSI-----ILEVHSPERCLLY-SMKLWGDNLEALRIAS-GTIYNEI 205 (1088)
Q Consensus 142 p~~-----~d~----~~lasgs~Dg~V~iWd~~~~~~-----~~~~~~~~~~~~~-s~~~~~~s~~~~~l~s-g~~dg~I 205 (1088)
..+ ..+ ..++.+++||+|.=|...-... ...+.......+| .+++... ..+.+|+. --..++|
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~-~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPT-GGGDYLYAANFRQGRI 164 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeec-CCCceEEEeccCCCce
Confidence 411 011 1356678999999998643322 1222222222333 3444322 22344444 3456888
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~ 285 (1088)
-|+|-...+..-. .. +.-..-.....-.. ++.+.+ .--|+-..-.+++..=+.+..-|.|-++|.
T Consensus 165 DVFd~~f~~~~~~--g~--F~DP~iPagyAPFn----------Iqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~ 229 (336)
T TIGR03118 165 DVFKGSFRPPPLP--GS--FIDPALPAGYAPFN----------VQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTL 229 (336)
T ss_pred EEecCccccccCC--CC--ccCCCCCCCCCCcc----------eEEECC-eEEEEEEecCCcccccccCCCcceEEEEcC
Confidence 8888663221100 00 00000000000111 111110 000111111333333344555678888888
Q ss_pred CCCcccCCCCceeeeceeeeccCcceEEEEEC--------CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC-----CCe
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-----RGI 351 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--------~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~-----~~V 351 (1088)
... .++.+...+.-...|.++.. +.+|+----||+|..+|. +|+.+..+....+ +++
T Consensus 230 ~G~---------l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GL 300 (336)
T TIGR03118 230 NGQ---------LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGL 300 (336)
T ss_pred CCc---------EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCe
Confidence 763 22212233444456777653 567777677999999998 7887777766544 257
Q ss_pred EEEEEcC
Q 001391 352 WRCLYDS 358 (1088)
Q Consensus 352 ~~l~~~~ 358 (1088)
|.|+|..
T Consensus 301 WgL~fGn 307 (336)
T TIGR03118 301 WSLTFGN 307 (336)
T ss_pred EEeeeCC
Confidence 8898865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=24 Score=42.80 Aligned_cols=104 Identities=9% Similarity=0.001 Sum_probs=48.8
Q ss_pred CCCEEEEEECC------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC--------cEEE
Q 001391 267 CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC--------TCRV 332 (1088)
Q Consensus 267 ~g~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg--------~i~v 332 (1088)
+++..+.|+.+ +.+..||..+.+. ..+. .+.........+...+..++.||.+. .+.+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKW------SKGS--PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCee------eecC--CCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 45566666632 4578888887654 1111 11101111123333456666676432 3778
Q ss_pred EcCCCceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEcCC
Q 001391 333 WGSDGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFD-----SAIKVHQFQA 379 (1088)
Q Consensus 333 Wd~~~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~D-----g~I~iwd~~~ 379 (1088)
||.....-..+.... .+.-.+++. -++.+++.||.+ ..+.+||...
T Consensus 461 yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 461 YNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 887433222221110 001112222 266677777765 3566777644
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.75 E-value=21 Score=43.64 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=91.6
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEE------EEee-e--------------CCcceEEEEecccccccCCCccceeeEEEE
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIR------PFQV-F--------------HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~------~~~~-~--------------~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+.+|..+.++.|.||+...-..+. .+.. . ....|.-|.+.- .+. .+.++++
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~----lg~----~EVLl~c 120 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGD----LGG----EEVLLLC 120 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecc----cCC----eeEEEEE
Confidence 568888899999999986422211 1100 0 001133333221 111 2477888
Q ss_pred ECCCEEEEEEeccC-----CC--CCCCCCCccccccceeeeccCCCCcEEEEEEe--cccCCCCEEEEEEcCCcEEEEEc
Q 001391 94 FGEKRVKLFELNFE-----LS--PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL--KVCNGNRSLAIGCSDNSIRVWDI 164 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~-----~~--~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~--p~~~d~~~lasgs~Dg~V~iWd~ 164 (1088)
.+||.|.+|..+.- .. ...... .....++...+. -....|+++++ . ..++||+++....|.||-+
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~--~r~~i~P~f~~~-v~~SaWGLdIh~~~---~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIERFSEDNDSGF--SRLKIKPFFHLR-VGASAWGLDIHDYK---KSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHhhcccccccc--ccccCCCCeEee-cCCceeEEEEEecC---cceEEEEecCCceEEEEEE
Confidence 88999999987520 00 000000 001112222222 23478999998 6 7789999988888988876
Q ss_pred CCCce-EEEe-ccCCceeEEEEeeecCCCCCc---EEEEEecCCeEEEEEec
Q 001391 165 SNSSI-ILEV-HSPERCLLYSMKLWGDNLEAL---RIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 165 ~~~~~-~~~~-~~~~~~~~~s~~~~~~s~~~~---~l~sg~~dg~I~vwd~~ 211 (1088)
..... .... .......+-++.|.....++. .|++++..|++.+|++.
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 54211 1110 111223355677776654433 88899999999999984
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.61 E-value=0.25 Score=59.18 Aligned_cols=106 Identities=16% Similarity=0.284 Sum_probs=52.7
Q ss_pred EEEEEE-CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE---ECCCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 270 KLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC---LTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 270 ~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~---~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
++++++ ..+.+++|.-...++........+. ....|...|.... |.-..+++-+.+++|.+|.- .........
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~--iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~ 383 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ--IVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSR 383 (1283)
T ss_pred EEEecccCCcceeEeeccchhhhhhhcccceE--eecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhh
Confidence 345544 4567999998776652111112222 2335655554422 22345667778899999875 222222233
Q ss_pred ccCCCCeEEEEE--cC---CCCEEEEEeC-CCCEEEEEc
Q 001391 345 EHIGRGIWRCLY--DS---LSSLLVTAGF-DSAIKVHQF 377 (1088)
Q Consensus 345 ~h~~~~V~~l~~--~~---dg~~l~tg~~-Dg~I~iwd~ 377 (1088)
.|.+-+|.+-.+ +| +...+.+|+. +..+++|-.
T Consensus 384 ~~~~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s 422 (1283)
T KOG1916|consen 384 PHDGHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVS 422 (1283)
T ss_pred hhhcceeccccccccCCCccccccccCCcchhhhhhhhh
Confidence 344334544322 22 2224455543 445666655
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.49 E-value=76 Score=36.53 Aligned_cols=261 Identities=12% Similarity=0.080 Sum_probs=145.3
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~ 123 (1088)
..+.+++..+.+....+..+. ...++... +++. ..+++-.+...+...+... . .
T Consensus 11 ~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~-------~~g~--~~~v~~~~~~~~~~~~~~~-n--------------~ 64 (381)
T COG3391 11 ADVSVINTGTNKVTAAISLGR--GPGGVAVN-------PDGT--QVYVANSGSNDVSVIDATS-N--------------T 64 (381)
T ss_pred CceEEEeecccEEEEEeecCC--CCceeEEc-------CccC--EEEEEeecCceeeeccccc-c--------------e
Confidence 347788877777766666533 36777777 5552 1233333333343333331 1 1
Q ss_pred eeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI- 201 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~- 201 (1088)
.......-...-..+++++ .+. ..++...++.|.+.|..+.+.......... -..+.+ ++++..+..+..
T Consensus 65 ~~~~~~~g~~~p~~i~v~~---~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~--P~~~~~---~~~~~~vYV~n~~ 136 (381)
T COG3391 65 VTQSLSVGGVYPAGVAVNP---AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG--PVGLAV---DPDGKYVYVANAG 136 (381)
T ss_pred eeeeccCCCccccceeeCC---CCCeEEEecCCCCeEEEEcCcccceeeEeeeccC--CceEEE---CCCCCEEEEEecc
Confidence 1111111113345677877 776 445555578999999887777766654332 223333 466766655544
Q ss_pred --CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE-ECCC
Q 001391 202 --YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDDR 278 (1088)
Q Consensus 202 --dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~-s~Dg 278 (1088)
++.+.+.|.. +...+.....-..+ ..++++|+|.++..+ ..++
T Consensus 137 ~~~~~vsvid~~---------------------------------t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 137 NGNNTVSVIDAA---------------------------------TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred cCCceEEEEeCC---------------------------------CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCC
Confidence 5777777776 44445444433334 899999999976555 4788
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcC-CCceeEE-EcccCCCCe
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKM-IKEHIGRGI 351 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~-~~~~~~~-~~~h~~~~V 351 (1088)
.|.+.|...... .+... ....+-......+.+. +..+...... +.+.+.|. .+..... ...-.. .-
T Consensus 183 ~v~vi~~~~~~v-----~~~~~-~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~ 255 (381)
T COG3391 183 TVSVIDTSGNSV-----VRGSV-GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-AP 255 (381)
T ss_pred eEEEEeCCCcce-----ecccc-ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CC
Confidence 999999766432 00000 0011112233455554 5544443333 58888888 4444333 222221 24
Q ss_pred EEEEEcCCCCEEEEEeC-CCCEEEEEcCC
Q 001391 352 WRCLYDSLSSLLVTAGF-DSAIKVHQFQA 379 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~-Dg~I~iwd~~~ 379 (1088)
..+.+.|+|..+..... .+.+.+-|...
T Consensus 256 ~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 256 RGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 57889999998877744 47777777643
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.08 E-value=26 Score=35.56 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=58.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~ 123 (1088)
..|++||+.+|+.+.+-..... .+++--+... .|. ....++.++....+|.++ ++
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~-~~FgEGit~~-----gd~----~y~LTw~egvaf~~d~~t---------------~~ 122 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPD-TVFGEGITKL-----GDY----FYQLTWKEGVAFKYDADT---------------LE 122 (262)
T ss_pred ceeEEEeccCceEEEEeecCCc-cccccceeec-----cce----EEEEEeccceeEEEChHH---------------hh
Confidence 7899999999999887765422 3443333211 343 788889999999999874 23
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
.+..+. ..+.=|.++- |+..|..+....+++.-|.++....
T Consensus 123 ~lg~~~-y~GeGWgLt~-----d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 123 ELGRFS-YEGEGWGLTS-----DDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred hhcccc-cCCcceeeec-----CCcceEeeCCceEEEecCHHHhhhc
Confidence 333222 1222344443 5555666655667777777654433
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=84.68 E-value=3.1 Score=30.59 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=26.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAG 54 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg 54 (1088)
|.|.+++|| |+.. ...+|+...+ +.|.|+|+.++
T Consensus 1 GAvR~~kFs--P~~~-~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFS--PEPG-GNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeC--CCCC-cccEEEEEccCCeEEEEEcccC
Confidence 568999999 8611 1268888886 99999999853
|
It contains a characteristic DLL sequence motif. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.95 E-value=65 Score=34.47 Aligned_cols=101 Identities=9% Similarity=0.086 Sum_probs=66.4
Q ss_pred EEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceE-EEEecccccccCCCccceeeEEEEE-C-
Q 001391 21 SALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALF-G- 95 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~-~i~~s~~~~~~~~d~~~~~~~la~~-g- 95 (1088)
..++|+ |. ..+-++.+- +..-.++|..+.+.+.++...++---+ .=.|| ||| .+|-.. +
T Consensus 71 Hgi~~~--p~---~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-------~dG----~~LYATEnd 134 (366)
T COG3490 71 HGIAFH--PA---LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-------PDG----RLLYATEND 134 (366)
T ss_pred CCeecC--CC---CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-------CCC----cEEEeecCC
Confidence 357777 75 234444443 567889999888776665543221111 12477 888 455443 2
Q ss_pred ----CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 96 ----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 96 ----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+.|-|||.... ++.+..+..|.=.-..+.+.+ ||++|+.+.
T Consensus 135 fd~~rGViGvYd~r~~--------------fqrvgE~~t~GiGpHev~lm~---DGrtlvvan 180 (366)
T COG3490 135 FDPNRGVIGVYDAREG--------------FQRVGEFSTHGIGPHEVTLMA---DGRTLVVAN 180 (366)
T ss_pred CCCCCceEEEEecccc--------------cceecccccCCcCcceeEEec---CCcEEEEeC
Confidence 267999998832 567777888887778899999 999988763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=83.93 E-value=5.6 Score=46.96 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=71.7
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.-++++.-+|.|+.+++++.||+|++|+....+. ..+ .....+-..+.|.+.-++++..|..+.-|.-+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q------ski-----~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ------SKI-----CEEAKPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch------hhh-----hhhcCCccceeeeccceEEEeccchhheeecc
Confidence 4467788889999999999999999999987543 111 11222334455666668888889999999887
Q ss_pred CceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 337 GKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 337 ~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|-..+++.. ...+...++.+.|..+. +.|.--|-|.-+|.
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaqn-vvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQN-VVGTLCGGVEQFDC 125 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhhh-hhhhhccceeeehH
Confidence 765555432 22334667777776543 33444455555554
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.34 E-value=1.5e+02 Score=38.21 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=105.2
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCC------CCCcEEEEEec---------CCeEEEEEeccCccccCCCCC
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDN------LEALRIASGTI---------YNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s------~~~~~l~sg~~---------dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
.|.+.+..+++.+-.+.-++...+.++++..-. ....+|++|+. .|.+.|+|+- +..|...
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diI--eVVPepg-- 1080 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDII--EVVPEPG-- 1080 (1366)
T ss_pred eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEE--EecCCCC--
Confidence 466666666666666655555555555543211 11347888763 4889999976 1111111
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEE--eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
+. .+...++.+ +.-++.|..++=- +| +|+++.. ..|.+|+++... ..++
T Consensus 1081 --------kP-----------~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~G-qKI~v~~l~r~~-------~lig 1131 (1366)
T KOG1896|consen 1081 --------KP-----------FTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQG-QKIIVRKLDRDS-------ELIG 1131 (1366)
T ss_pred --------CC-----------cccceeeeeehhhcccceEEEEEe-cc-EEEEccC-cEEEEEEeccCC-------ccee
Confidence 00 011122222 2345667666532 33 4555433 479999995532 2333
Q ss_pred ceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC--CCceeEEEcc-cCCCCeEEEEEcCCCC--EEEEEeCCCCEEEE
Q 001391 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIKE-HIGRGIWRCLYDSLSS--LLVTAGFDSAIKVH 375 (1088)
Q Consensus 301 ~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~-h~~~~V~~l~~~~dg~--~l~tg~~Dg~I~iw 375 (1088)
..+..-.-.+.++..-.++|+.|.--..|.+... ....+..+.. ...-.+.++.|.-||. .++++..|++|+++
T Consensus 1132 -VaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1132 -VAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred -eEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 2333333444444444678888777666666555 4444444322 2222488888877775 67888999999999
Q ss_pred EcCCC
Q 001391 376 QFQAF 380 (1088)
Q Consensus 376 d~~~~ 380 (1088)
-..-.
T Consensus 1211 ~Y~Pe 1215 (1366)
T KOG1896|consen 1211 MYAPE 1215 (1366)
T ss_pred EeCCC
Confidence 87543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=83.07 E-value=19 Score=43.57 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=69.3
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
++..++-+ ..++.|||...+.+...-.-.+...|.+++|... ||++ .+++++-.+.|.++.--.-. ...
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst-----~d~q---siLaVGf~~~v~l~~Q~R~d--y~~ 110 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST-----PDGQ---SILAVGFPHHVLLYTQLRYD--YTN 110 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec-----CCCC---EEEEEEcCcEEEEEEccchh--hhc
Confidence 45555544 4799999999887544333223447999999865 8885 77888889999999653111 000
Q ss_pred CCCccccccceeee--ccCCC-CcEEEEEEecccCCCCEEEEEEcCCcEEEEEc
Q 001391 114 YQPETCVNLSLVQS--LPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~--l~~h~-~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~ 164 (1088)
..| ....++. +..|+ ++|.+..|.+ +|.+++.+ ++.+.|+|-
T Consensus 111 ~~p----~w~~i~~i~i~~~T~h~Igds~Wl~---~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGP----SWAPIRKIDISSHTPHPIGDSIWLK---DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCc----ccceeEEEEeecCCCCCccceeEec---CCeEEEEe--CCEEEEECC
Confidence 011 1122222 23454 6799999998 88755433 466777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.82 E-value=35 Score=39.72 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=84.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC-CEEEEEEeccCCCCCCCCCCcccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE-KRVKLFELNFELSPNSQYQPETCVNL 122 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd-~~v~iw~l~~~~~~~~~~~~~~~~~~ 122 (1088)
..+.+=|.. |.-...+.. ....+..-+|+ |+++....+....+. ..+.+++++... .
T Consensus 173 ~~l~~~D~d-g~~~~~l~~-~~~~~~~p~ws-------~~~~~~~y~~f~~~~~~~i~~~~l~~g~-------------~ 230 (425)
T COG0823 173 YELALGDYD-GYNQQKLTD-SGSLILTPAWS-------PDGKKLAYVSFELGGCPRIYYLDLNTGK-------------R 230 (425)
T ss_pred ceEEEEccC-CcceeEecc-cCcceeccccC-------cCCCceEEEEEecCCCceEEEEeccCCc-------------c
Confidence 344444443 433333332 22345556676 666311111111223 468888988654 3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
..+..+.++. ..-+|+| ||+.|+-. ..|+. |.+.|+..+.... +..... ....-. .+|||..|+-.
T Consensus 231 ~~i~~~~g~~---~~P~fsp---DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-i~~~Ps---~spdG~~ivf~ 299 (425)
T COG0823 231 PVILNFNGNN---GAPAFSP---DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-INTSPS---WSPDGSKIVFT 299 (425)
T ss_pred ceeeccCCcc---CCccCCC---CCCEEEEEECCCCCccEEEEcCCCCccee-cccCCc-cccCcc---CCCCCCEEEEE
Confidence 3444445444 3467899 98866554 55665 5556666665333 332211 111222 26888877654
Q ss_pred -ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 200 -TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 200 -~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
+..|.-.||-... .+....++.-..+.=..-.|+|||++++..+.
T Consensus 300 Sdr~G~p~I~~~~~--------------------------------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 300 SDRGGRPQIYLYDL--------------------------------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred eCCCCCcceEEECC--------------------------------CCCceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 4455555554440 11112222222222226778999999988774
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=38 Score=41.07 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=17.0
Q ss_pred CCCEEEEEEcC-----CcEEEEEcCCCceE
Q 001391 146 GNRSLAIGCSD-----NSIRVWDISNSSII 170 (1088)
Q Consensus 146 d~~~lasgs~D-----g~V~iWd~~~~~~~ 170 (1088)
++...+.||.+ ..+..||..+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 66777778765 34777888766543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=82.37 E-value=1e+02 Score=35.49 Aligned_cols=228 Identities=14% Similarity=0.150 Sum_probs=91.3
Q ss_pred CeeEEEEeeeC-CcceEEEEecccccccCC--CccceeeEEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeec
Q 001391 54 GTLIRPFQVFH-GIRLHGISCNFINCTEGS--VSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1088)
Q Consensus 54 g~~~~~~~~~~-~~~V~~i~~s~~~~~~~~--d~~~~~~~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l 128 (1088)
+++++.+.... +...|..-|+. |+..+ +....+++|++-+ ...|.|.|+.+.. .. .++.+.+
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNa--CSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dP-----r~------P~l~KvI 118 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNA--CSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDP-----RK------PRLHKVI 118 (461)
T ss_dssp TSEEEEEE-SSS---B---EES----GGSTT--TT--S-EEEEEBTTT--EEEEE--S-T-----TS-------EEEEEE
T ss_pred ccEEEEEeCCCCCCccccccCcc--cccccCCCCcccCCcEEeeeeccCcEEEEECCCCC-----CC------CceEeee
Confidence 57888776533 34567666651 22222 1111236666666 7889999988533 11 2333333
Q ss_pred cC---CC----CcEEEEEEecccCCCCEEEEEE--c----CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 129 PR---LS----HWVFDVCFLKVCNGNRSLAIGC--S----DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 129 ~~---h~----~~I~~v~f~p~~~d~~~lasgs--~----Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
.. +. ..-..+...| +|+.++|+- . -|-+.+.|-++.+.......+.....+.-.||.. |..+.
T Consensus 119 e~~ev~~k~g~s~PHT~Hclp---~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~q-pr~nv 194 (461)
T PF05694_consen 119 EPEEVFEKTGLSRPHTVHCLP---DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQ-PRHNV 194 (461)
T ss_dssp -HHHHHHHH-EEEEEEEEE-S---S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEE-TTTTE
T ss_pred CHHHHHhhcCCCCCceeeecC---CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEc-CCCCE
Confidence 21 11 2233444556 888887752 2 2357788888887777766544434444444443 33444
Q ss_pred EEEEe--------------------cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 196 IASGT--------------------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 196 l~sg~--------------------~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
++|.. .-..+.+||+. +.+.++++.-.
T Consensus 195 MiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~---------------------------------~r~~~Q~idLg 241 (461)
T PF05694_consen 195 MISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS---------------------------------TRKLLQTIDLG 241 (461)
T ss_dssp EEE-B---HHHHTT---TTTHHHH-S--EEEEEETT---------------------------------TTEEEEEEES-
T ss_pred EEEeccCChhhcccCCChhHhhcccccCeEEEEECC---------------------------------CCcEeeEEecC
Confidence 55432 12567777777 66666666533
Q ss_pred C--CCEEEEEEcC--CCCE-EEEEECCCcEEEEEc-CCCcccCCCCceee-e--ceeeec------------cCcceEEE
Q 001391 256 E--GSIFRIEWSS--CGSK-LVSVSDDRSARIWEV-RAEYWKDSDSIEEV-G--SSVLYG------------HNARVWDC 314 (1088)
Q Consensus 256 ~--~~V~~v~~sp--~g~~-l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~i-~--~~~~~~------------h~~~I~~v 314 (1088)
+ ..+..|.|.. +..+ ++.+.-..+|..|-- ..+... .+.+ . .....+ -..-|+++
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~----a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA----AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE----EEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee----eeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 2 2356777754 3433 333334445544433 333221 1111 1 000000 13457888
Q ss_pred EEC--CCEE-EEEeCCCcEEEEcC
Q 001391 315 CLT--DSFI-ITAGEDCTCRVWGS 335 (1088)
Q Consensus 315 ~~~--~~~l-~sg~~Dg~i~vWd~ 335 (1088)
..+ +.+| ++.-.+|.+|.||+
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEccCCCEEEEEcccCCcEEEEec
Confidence 887 4544 56668999999999
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.25 E-value=25 Score=40.89 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=72.7
Q ss_pred CceEEecCCCce------eeeeEEEEEeccCCCCCCCCEEEEEe--C--CeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 5 DLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 5 ~i~iWdl~~g~~------~~~V~~v~fs~~pd~~~~~~~laag~--d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.+.++|+.+++. .+.-.+-+|+ || ++.|+-.. + ..|.++|+.++... .+....+... .=.|+
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fs--pD----G~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~-~Ps~s 290 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFS--PD----GSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINT-SPSWS 290 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCC--CC----CCEEEEEECCCCCccEEEEcCCCCcce-ecccCCcccc-CccCC
Confidence 488899999883 3445577899 99 66666654 3 57888898877633 3443333211 33444
Q ss_pred ccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
|||+ .++.+++ .+.=.||-...+. .....+......=..-.++| ||++|+..
T Consensus 291 -------pdG~---~ivf~Sdr~G~p~I~~~~~~g--------------~~~~riT~~~~~~~~p~~Sp---dG~~i~~~ 343 (425)
T COG0823 291 -------PDGS---KIVFTSDRGGRPQIYLYDLEG--------------SQVTRLTFSGGGNSNPVWSP---DGDKIVFE 343 (425)
T ss_pred -------CCCC---EEEEEeCCCCCcceEEECCCC--------------CceeEeeccCCCCcCccCCC---CCCEEEEE
Confidence 8883 4444443 4555666555332 11111111111111666788 99988877
Q ss_pred Ec-CCc--EEEEEcCCCc
Q 001391 154 CS-DNS--IRVWDISNSS 168 (1088)
Q Consensus 154 s~-Dg~--V~iWd~~~~~ 168 (1088)
+. +|. |.+.|+.++.
T Consensus 344 ~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 344 SSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eccCCceeeEEeccCCCC
Confidence 64 343 5566665554
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.99 E-value=54 Score=41.21 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=66.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEE--EEcCCCcee
Q 001391 263 EWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR--VWGSDGKQL 340 (1088)
Q Consensus 263 ~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~--vWd~~~~~~ 340 (1088)
+..|-..++++|- .+.+++|++..++. ++...+.--+..|..+++....++.|...-.+. .|+..++.+
T Consensus 940 Ai~~f~~~~Lagv-G~~l~~YdlG~K~l--------LRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 940 AICPFQGRVLAGV-GRFLRLYDLGKKKL--------LRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred EEeccCCEEEEec-ccEEEEeeCChHHH--------HhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE
Confidence 4456566655553 45899999988644 211122224677899999887787776555554 455566666
Q ss_pred EEEcccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 341 KMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 341 ~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..+.... .+.|+.+.+.. ...++.+.+-|.+.+-.+.
T Consensus 1011 ~~fadD~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELLD-YDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEeCCCccceeeEEEEec-CCceeeccccCcEEEEECC
Confidence 6664322 23466666553 3457888887888777663
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=81.71 E-value=1e+02 Score=38.44 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=59.3
Q ss_pred CceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc-c----ccccccccccccCcce-eecccccccceeEEEEEeccCCce
Q 001391 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD-L----LNDKSVALHVEVSPLN-YFKGAHGISTVSTLSVAKLRSNQT 653 (1088)
Q Consensus 580 ~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~-~----~~~~~~~~~~~l~~~~-~~~g~hg~~~Vtsv~~~~~~~~~~ 653 (1088)
.-.|..+.++|+|++||..+..|- .|-.+... . +..+......+..++. .+...+....|.++.|.+.+.++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 346899999999999999888654 44445431 1 1111111112222222 222222236799999998876667
Q ss_pred EEEEecCCCeEEEEEeecCCc
Q 001391 654 EIRSTGGDGCICYLEYDKDRE 674 (1088)
Q Consensus 654 ~l~t~g~Dg~i~iw~~~~~~~ 674 (1088)
+|+.=..|+++|+|++.....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred eEEEEecCCEEEEEecCCCCC
Confidence 888888899999999975443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=81.70 E-value=1.2e+02 Score=35.97 Aligned_cols=162 Identities=11% Similarity=0.113 Sum_probs=89.2
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
.||.+++|. .. ...+++.- +|.+++=| .+.+..|.. |+++.|.|......| .+||+-
T Consensus 20 HPvhGlaWT--DG----kqVvLT~L~l~~gE~kfGd---s~viGqFEh-----V~GlsW~P~~~~~~p------aLLAVQ 79 (671)
T PF15390_consen 20 HPVHGLAWT--DG----KQVVLTDLQLHNGEPKFGD---SKVIGQFEH-----VHGLSWAPPCTADTP------ALLAVQ 79 (671)
T ss_pred ccccceEec--CC----CEEEEEeeeeeCCccccCC---ccEeeccce-----eeeeeecCcccCCCC------ceEEEe
Confidence 578888887 32 34444432 46655533 356677764 999999976433333 689999
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
-.+.|.||.+........+. .......+. ...---..+.|+| ....|++-..+..-.+.++.......+.
T Consensus 80 HkkhVtVWqL~~s~~e~~K~------l~sQtcEi~e~~pvLpQGCVWHP---k~~iL~VLT~~dvSV~~sV~~d~srVka 150 (671)
T PF15390_consen 80 HKKHVTVWQLCPSTTERNKL------LMSQTCEIREPFPVLPQGCVWHP---KKAILTVLTARDVSVLPSVHCDSSRVKA 150 (671)
T ss_pred ccceEEEEEeccCccccccc------eeeeeeeccCCcccCCCcccccC---CCceEEEEecCceeEeeeeeeCCceEEE
Confidence 99999999998433111110 001111110 0011124577899 8888877666555556666543333333
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEE-ecCCeEEEEEec
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~I~vwd~~ 211 (1088)
.-.....+.+.++ ..||..|+.+ +..=.-++||-.
T Consensus 151 Di~~~G~IhCACW---T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 151 DIKTSGLIHCACW---TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eccCCceEEEEEe---cCcCCEEEEEeCCeEEEEEecCc
Confidence 3233445555555 3466655443 222234577754
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.62 E-value=50 Score=39.42 Aligned_cols=100 Identities=11% Similarity=0.121 Sum_probs=46.5
Q ss_pred CCCEEEEEECC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEE
Q 001391 267 CGSKLVSVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMI 343 (1088)
Q Consensus 267 ~g~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~ 343 (1088)
+|+..+.|+.+ ..+..||..+.+. ..+. .+.........+.+.+.+.+.|+ .+.+||.....-..+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W------~~~~--~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQW------QFGP--STYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLI 430 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEE------EeCC--CCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEc
Confidence 45666666654 3467788877544 1111 11111111222334455555553 467788743322222
Q ss_pred ccc-CCCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEcC
Q 001391 344 KEH-IGRGIWRCLYDSLSSLLVTAGFD-----SAIKVHQFQ 378 (1088)
Q Consensus 344 ~~h-~~~~V~~l~~~~dg~~l~tg~~D-----g~I~iwd~~ 378 (1088)
... ..+.-.+++. -++++.+.||.+ .++..||..
T Consensus 431 ~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 431 DDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred CCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECC
Confidence 111 1111112232 356777888765 245566654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=81.25 E-value=35 Score=41.40 Aligned_cols=114 Identities=11% Similarity=0.176 Sum_probs=64.3
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEee--eCCCEEEEEcCCCcEEEEeCC
Q 001391 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 533 ~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~s--pdg~~LatGs~dg~I~Iw~~~ 610 (1088)
.-++..++-+....+.|||..... ++....| .....|..++|. ||++.+.+-+-...|.+|.-.
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~------------lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGV------------LEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcE------------EEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 355665555566799999998542 2222333 347789999986 788877777788888888643
Q ss_pred cccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEE
Q 001391 611 RDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (1088)
Q Consensus 611 ~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~ 668 (1088)
+.......+ .+..+..+.. . .|....|....|. .++..++.+| ..+.+++
T Consensus 105 R~dy~~~~p-~w~~i~~i~i-~-~~T~h~Igds~Wl---~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 105 RYDYTNKGP-SWAPIRKIDI-S-SHTPHPIGDSIWL---KDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred chhhhcCCc-ccceeEEEEe-e-cCCCCCccceeEe---cCCeEEEEeC--CEEEEEC
Confidence 311100001 1112211211 1 2223568888998 5544443333 4455554
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=80.97 E-value=94 Score=35.87 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~ 335 (1088)
+....+..++++.+++.+..-..++-||-..... +. ........+.++.+. +..++..+..|.+..=+-
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W------~~----~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d 308 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW------QP----HNRASARRIQNMGWRADGGLWLLTRGGGLYVSKG 308 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcce------EE----ecCCCccceeeeeEcCCCCEEEEeCCceEEEecC
Confidence 4456677788887777665544444455332100 11 222334567788886 445555667787655444
Q ss_pred CCc-----eeEEEccc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCc
Q 001391 336 DGK-----QLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (1088)
Q Consensus 336 ~~~-----~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1088)
.++ ........ ....+.++.+.+++.. +.+|.+|.+....-.++. |....
T Consensus 309 ~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~D~G~t-------------------W~~~~---- 364 (398)
T PLN00033 309 TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRSTDGGKS-------------------WKRDK---- 364 (398)
T ss_pred CCCcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeCCCCcc-------------------eeEcc----
Confidence 553 23333222 2225889999888765 455667766655433221 11100
Q ss_pred cceeeccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 410 EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 410 ~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
....-......+.|.++++.++.+.+|.|+++
T Consensus 365 ----~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 365 ----GADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ----ccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 00011134668888888899999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1088 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-07 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 7e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 5e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 6e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 6e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.98 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.98 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.98 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.98 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.93 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.92 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.91 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.91 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.91 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.91 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.9 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.87 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.85 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.83 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.81 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.76 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.75 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.75 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.75 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.74 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.73 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.73 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.7 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.7 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.7 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.69 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.68 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.68 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.65 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.63 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.63 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.62 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.61 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.6 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.6 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.6 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.59 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.59 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.56 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.49 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.48 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.48 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.47 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.47 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.46 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.45 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.45 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.41 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.41 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.4 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.35 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.33 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.32 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.31 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.29 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.29 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.28 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.28 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.27 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.26 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.23 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.23 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.22 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.21 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.2 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.15 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.12 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.11 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.11 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.1 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.09 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.09 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.08 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.08 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.02 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.02 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.01 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.98 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.96 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.96 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.9 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.89 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.88 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.88 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.84 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.84 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.84 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.83 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.82 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.81 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.77 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.77 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.76 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.75 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.72 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.7 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.7 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.67 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.66 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.65 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.63 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.63 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.61 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.6 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.57 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.57 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.47 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.47 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.45 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.38 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.38 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.38 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.37 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.36 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.26 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.2 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.18 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.15 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.15 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.09 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.08 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.04 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.03 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.01 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.0 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.95 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.92 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.84 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.83 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.76 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.76 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.72 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.69 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.63 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.62 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.59 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.51 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.49 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.46 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.33 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.29 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.27 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.23 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.23 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.21 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.15 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.08 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.03 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.9 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.82 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.7 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.69 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.61 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.58 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.57 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.55 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.51 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.46 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.44 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.42 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.16 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.1 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.02 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.83 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.8 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.64 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.51 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.42 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.37 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.35 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.29 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.27 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.26 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.08 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.71 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.41 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 94.39 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 94.33 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.33 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.29 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 93.93 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 93.88 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 93.87 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.84 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.49 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.36 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 93.33 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 92.99 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 92.95 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 92.78 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.6 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 91.63 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 91.1 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 90.88 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 90.79 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 90.49 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 90.3 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 88.52 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 88.1 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 86.68 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 85.69 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 84.89 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 83.97 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 82.52 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=528.10 Aligned_cols=559 Identities=17% Similarity=0.274 Sum_probs=441.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|+||+|+ || +++||+|+ |++|+||| .++++++++.+|.+ .|.+++|+ ||++ .+++++
T Consensus 15 H~~~V~~~a~s--pd----g~~las~~~d~~v~iWd-~~~~~~~~l~gh~~-~V~~l~fs-------pdg~---~las~~ 76 (577)
T 2ymu_A 15 HSSSVRGVAFS--PD----GQTIASASDDKTVKLWN-RNGQLLQTLTGHSS-SVWGVAFS-------PDGQ---TIASAS 76 (577)
T ss_dssp CSSCEEEEEEC--TT----SSCEEEEETTSEEEEEC-TTSCEEEEEECCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCC-CEEEEEEC-------CCCC---EEEEEe
Confidence 67899999999 99 99999988 69999999 47899999999776 79999999 8873 444445
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|++|+|||+. .+.+..+.+|.+.|.+++|+| ++++|++++.|+.+++|+...... ....
T Consensus 77 ~d~~i~vWd~~----------------~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~d~~~~~~~~~~~~~-~~~~ 136 (577)
T 2ymu_A 77 DDKTVKLWNRN----------------GQLLQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRNGQLL-QTLT 136 (577)
T ss_dssp TTSCEEEEETT----------------SCEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTCCEE-EEEC
T ss_pred CCCEEEEEECC----------------CCEEEEEECCCCCEEEEEECC---CCCEEEEEcCCCceeeccccccee-eecc
Confidence 69999999965 356788899999999999999 999999999999999999765443 3333
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+. ..++.+.+ .+++..+++++.++.+++|+.. .........
T Consensus 137 ~~~-~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~ 178 (577)
T 2ymu_A 137 GHS-SSVWGVAF---SPDGQTIASASDDKTVKLWNRN----------------------------------GQLLQTLTG 178 (577)
T ss_dssp CCS-SCEEEEEE---CTTSSCEEEEETTSEEEEECTT----------------------------------SCEEEEEEC
T ss_pred CCC-Cceeeeee---ecCCccceecccccceeccccc----------------------------------eeeeeeccC
Confidence 332 33445554 6788899999999999999865 344556778
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|...|.++.|+|+++++++++.|+.|++||... +.+. .+.+|...|.+++|+ +.+|++++.|+.|++
T Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~---------~~~~--~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~ 247 (577)
T 2ymu_A 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------QLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---------CEEE--EEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC---------cEEE--EEecCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999999999999999999999999999999654 3333 778999999999998 578999999999999
Q ss_pred EcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccce
Q 001391 333 WGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1088)
Q Consensus 333 Wd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1088)
|+.+++.+..+.+|.. +|.+++|+|++++|++++.|+.|++|+..++.++
T Consensus 248 w~~~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~----------------------------- 297 (577)
T 2ymu_A 248 WNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ----------------------------- 297 (577)
T ss_dssp ECTTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-----------------------------
T ss_pred EeCCCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEE-----------------------------
Confidence 9999999999999988 7999999999999999999999999997543222
Q ss_pred eeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEec
Q 001391 413 RLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (1088)
Q Consensus 413 ~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~ 491 (1088)
.+.+|...|.+++|+|++.+++ ++.++.+..|++. .... ....++ ..++.++++.++ +..+++|+
T Consensus 298 -~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~---~~~~-~~~~~~-~~~v~~~~~s~~--------g~~l~~~~ 363 (577)
T 2ymu_A 298 -TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQHL-QTLTGH-SSSVWGVAFSPD--------GQTIASAS 363 (577)
T ss_dssp -EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEE-EEECCC-SSCEEEEEECTT--------SSEEEEEE
T ss_pred -EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC---CCee-EEEeCC-CCCEEEEEECCC--------CCEEEEEe
Confidence 2334567899999999986554 5677888865542 2221 222333 567888888554 48999999
Q ss_pred CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceee
Q 001391 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL 571 (1088)
Q Consensus 492 ~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l 571 (1088)
.||.|++|+... .... ... .+...+.. .+++|++++|++++.|+.|++|+.... +
T Consensus 364 ~dg~v~~~~~~~-~~~~----~~~---~~~~~v~~--~~~s~dg~~l~~~~~d~~v~~~~~~~~---------------~ 418 (577)
T 2ymu_A 364 DDKTVKLWNRNG-QLLQ----TLT---GHSSSVRG--VAFSPDGQTIASASDDKTVKLWNRNGQ---------------L 418 (577)
T ss_dssp TTSEEEEEETTC-CEEE----EEE---CCSSCEEE--EEECTTSSCEEEEETTSEEEEECTTCC---------------E
T ss_pred CCCEEEEEcCCC-CEEE----Eec---CCCCCeEE--EEECCCCCEEEEEeCCCEEEEEeCCCC---------------E
Confidence 999999999543 2111 111 22223333 468999999999999999999996421 1
Q ss_pred eeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCC
Q 001391 572 VAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSN 651 (1088)
Q Consensus 572 ~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~ 651 (1088)
... ..+|...|++++|+||+++|++++.|++|++|+.+.. ....+.+|. ..|++++|+ ++
T Consensus 419 ~~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--------------~~~~~~~~~--~~v~~~~~s---pd 478 (577)
T 2ymu_A 419 LQT-LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--------------LLQTLTGHS--SSVRGVAFS---PD 478 (577)
T ss_dssp EEE-EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--------------EEEEEECCS--SCEEEEEEC---TT
T ss_pred EEE-ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC--------------EEEEEcCCC--CCEEEEEEc---CC
Confidence 122 2368999999999999999999999999999997532 123344454 579999998 67
Q ss_pred ceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEe
Q 001391 652 QTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIP 731 (1088)
Q Consensus 652 ~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~ 731 (1088)
+.+|++++.|+.|++|+.+.. .++
T Consensus 479 ~~~las~~~d~~i~iw~~~~~----------~~~---------------------------------------------- 502 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRNGQ----------LLQ---------------------------------------------- 502 (577)
T ss_dssp SCEEEEEETTSEEEEEETTSC----------EEE----------------------------------------------
T ss_pred CCEEEEEeCCCEEEEEcCCCC----------EEE----------------------------------------------
Confidence 899999999999999984210 000
Q ss_pred eCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccCC
Q 001391 732 CGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALN 811 (1088)
Q Consensus 732 cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~ 811 (1088)
...+|...|++|+|+++
T Consensus 503 -------------------------------------------------~~~~h~~~v~~l~~s~d-------------- 519 (577)
T 2ymu_A 503 -------------------------------------------------TLTGHSSSVRGVAFSPD-------------- 519 (577)
T ss_dssp -------------------------------------------------EEECCSSCEEEEEECTT--------------
T ss_pred -------------------------------------------------EEeCCCCCEEEEEEcCC--------------
Confidence 00167889999999965
Q ss_pred CceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEEE
Q 001391 812 KSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLL 891 (1088)
Q Consensus 812 ~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 891 (1088)
+++||||++|++||||+++. ....++.+|. ..|++++|. .|+.+|
T Consensus 520 -g~~l~s~~~dg~v~lwd~~~-----~~~~~~~~h~--~~v~~~~fs---------------------------~dg~~l 564 (577)
T 2ymu_A 520 -GQTIASASDDKTVKLWNRNG-----QLLQTLTGHS--SSVWGVAFS---------------------------PDGQTI 564 (577)
T ss_dssp -SSCEEEEETTSEEEEECTTS-----CEEEEEECCS--SCEEEEEEC---------------------------TTSSCE
T ss_pred -CCEEEEEECcCEEEEEeCCC-----CEEEEEcCCC--CCEEEEEEc---------------------------CCCCEE
Confidence 68999999999999999642 4567889999 999999993 234567
Q ss_pred EEecceeEEEEEE
Q 001391 892 ISVGAKRVLTSWL 904 (1088)
Q Consensus 892 ~s~g~d~~i~~W~ 904 (1088)
+|+|.|++|++|.
T Consensus 565 ~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 565 ASASSDKTVKLWN 577 (577)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEeCCCEEEEeC
Confidence 8999999999993
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-53 Score=522.68 Aligned_cols=586 Identities=13% Similarity=0.118 Sum_probs=437.1
Q ss_pred EEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccce
Q 001391 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 8 iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
+|-.....+.+.+.+|+|+ || +++||++.++.|+|||+.+++.+..+.+|.. .|.+++|+ |+|
T Consensus 9 ~~~~~~~~~~g~~~~~~~s--pd----g~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~-~v~~~~~s-------pdg--- 71 (611)
T 1nr0_A 9 LFPSLPRTARGTAVVLGNT--PA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-QTTVAKTS-------PSG--- 71 (611)
T ss_dssp EECCCCCCCTTCCCCCEEC--TT----SSEEEEEETTEEEEEETTCSSCCEEECCCSS-CEEEEEEC-------TTS---
T ss_pred EECCCCCcccCceeEEeeC--CC----CCEEEeCCCCEEEEecCCCcccCeEecCCCC-ceEEEEEC-------CCC---
Confidence 3333333356788999999 99 9999999999999999999999999998777 69999999 888
Q ss_pred eeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC----CcEEEE
Q 001391 88 TFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRVW 162 (1088)
Q Consensus 88 ~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D----g~V~iW 162 (1088)
.+|+++ .|++|+|||+.... ......+.+|.+.|.+++|+| ++++|++++.+ +.|++|
T Consensus 72 -~~lasg~~d~~v~lWd~~~~~-------------~~~~~~~~~~~~~v~~v~fs~---dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 72 -YYCASGDVHGNVRIWDTTQTT-------------HILKTTIPVFSGPVKDISWDS---ESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp -SEEEEEETTSEEEEEESSSTT-------------CCEEEEEECSSSCEEEEEECT---TSCEEEEEECCSSCSEEEEET
T ss_pred -cEEEEEeCCCCEEEeECCCCc-------------ceeeEeecccCCceEEEEECC---CCCEEEEEECCCCceeEEEEe
Confidence 556555 59999999987432 344567789999999999999 99999998865 367777
Q ss_pred EcCCCceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 163 DISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
| .++....+.+|.. .+.+++| +|++. .|++|+.|++|++||..
T Consensus 135 d--~~~~~~~l~gh~~-~v~~v~f---~p~~~~~l~s~s~D~~v~lwd~~------------------------------ 178 (611)
T 1nr0_A 135 D--TGTSNGNLTGQAR-AMNSVDF---KPSRPFRIISGSDDNTVAIFEGP------------------------------ 178 (611)
T ss_dssp T--TCCBCBCCCCCSS-CEEEEEE---CSSSSCEEEEEETTSCEEEEETT------------------------------
T ss_pred e--CCCCcceecCCCC-CceEEEE---CCCCCeEEEEEeCCCeEEEEECC------------------------------
Confidence 6 4555555665544 4677777 56665 69999999999999987
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccCcceEEEEEC--
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~~I~~v~~~-- 317 (1088)
..+....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++. ...+.. ....+|...|.+++|+
T Consensus 179 ---~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-----~~~~~~~~~~~~~h~~~V~~v~~spd 250 (611)
T 1nr0_A 179 ---PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----TGVFEDDSLKNVAHSGSVFGLTWSPD 250 (611)
T ss_dssp ---TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred ---CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-----eeeeccccccccccCCCEEEEEECCC
Confidence 6677888999999999999999999999999999999999987543 111100 0112899999999998
Q ss_pred CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC--CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCcccccc
Q 001391 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEF 394 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~--~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 394 (1088)
+.+|++++.|++|++||+ +++.+..+..+.. ..+..+.+ ++..+++++.|+.+++|+.....
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~------------- 315 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGS------------- 315 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTE-------------
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCC-------------
Confidence 679999999999999999 6788777754321 13556666 67789999999999999984320
Q ss_pred CCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecC
Q 001391 395 NGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLL 473 (1088)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 473 (1088)
....+.+|...|++++|+|++++++ ++.++.+..|++.. ..........+...+.++++.
T Consensus 316 ----------------~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~---~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 316 ----------------IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST---GISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp ----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEECSSCSCSSCEEEEEEC
T ss_pred ----------------cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---CceeeecccCCcceEEEEEEC
Confidence 1223346778899999999986554 56788888665543 332233323346678888775
Q ss_pred CCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecC
Q 001391 474 SNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (1088)
Q Consensus 474 ~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~ 553 (1088)
+. ..+++++.|+.+++|++................ .... ..+++++++.++++ .++.+++|+..
T Consensus 377 ~~---------~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~----~~~~--~~~~s~dg~~~~~~-~~~~v~~~~~~ 440 (611)
T 1nr0_A 377 SK---------GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS----SQPL--GLAVSADGDIAVAA-CYKHIAIYSHG 440 (611)
T ss_dssp TT---------SCEEEEETTTEEEEECSSSSSSCTTSCCEEECS----SCEE--EEEECTTSSCEEEE-ESSEEEEEETT
T ss_pred CC---------CcEEEEEcCCceEEeecCCccccccceeeeecC----CCCc--EEEEeCCCcEEEEE-eCceEEEEeCC
Confidence 32 578899999999999987654332111111111 1122 24678999887776 56789999822
Q ss_pred CCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecc
Q 001391 554 DPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKG 633 (1088)
Q Consensus 554 ~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g 633 (1088)
. ... ..|...+.+++|+|||++||+|+.|++|++|++.... +..... .+
T Consensus 441 ----------------~-~~~--~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-----------~~~~~~-~~ 489 (611)
T 1nr0_A 441 ----------------K-LTE--VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-----------VSEVKT-IV 489 (611)
T ss_dssp ----------------E-EEE--EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-----------EEEEEE-EE
T ss_pred ----------------c-eee--eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-----------eeeeec-cC
Confidence 0 111 1367789999999999999999999999999987531 111122 33
Q ss_pred cccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeec
Q 001391 634 AHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFAS 713 (1088)
Q Consensus 634 ~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~ 713 (1088)
|. ..|++|+|+ +++.+|++++.|++|++|++..... .. .
T Consensus 490 h~--~~v~~v~fs---pdg~~las~s~d~~v~~w~~~~~~~---~~-----~---------------------------- 528 (611)
T 1nr0_A 490 HP--AEITSVAFS---NNGAFLVATDQSRKVIPYSVANNFE---LA-----H---------------------------- 528 (611)
T ss_dssp CS--SCEEEEEEC---TTSSEEEEEETTSCEEEEEGGGTTE---ES-----C----------------------------
T ss_pred CC--CceEEEEEC---CCCCEEEEEcCCCCEEEEEcCCCCc---ee-----e----------------------------
Confidence 44 579999999 7889999999999999999854210 00 0
Q ss_pred ccEEEEeCCcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEE
Q 001391 714 TDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLC 793 (1088)
Q Consensus 714 ~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~ 793 (1088)
....++|...|++|+
T Consensus 529 -----------------------------------------------------------------~~~~~~H~~~V~~v~ 543 (611)
T 1nr0_A 529 -----------------------------------------------------------------TNSWTFHTAKVACVS 543 (611)
T ss_dssp -----------------------------------------------------------------CCCCCCCSSCEEEEE
T ss_pred -----------------------------------------------------------------eeeeeecccceeEEE
Confidence 001135899999999
Q ss_pred EeccccccccccccccCCCceEEEeccCCceEEEEEecCCCcccccccccccc-cCCceeeeEEEeeeeeeccccccCcc
Q 001391 794 FVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEH-VGGSAVRSICFVSEINQISAVVDNVS 872 (1088)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H-~~gs~v~~~~f~~~~~~~~~~~~~~~ 872 (1088)
|+|+ +++|||||.|++||||++....+ .....+.+| . ..|++++|.+
T Consensus 544 fspd---------------g~~lasgs~D~~v~lW~~~~~~~--~~~~~~~~h~~--~~v~~v~fs~------------- 591 (611)
T 1nr0_A 544 WSPD---------------NVRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAM--SSVNSVIWLN------------- 591 (611)
T ss_dssp ECTT---------------SSEEEEEETTSCEEEEETTCTTS--CCEEETTSSTT--SCEEEEEEEE-------------
T ss_pred ECCC---------------CCEEEEEECCCcEEEEECCCccc--ccchhhccCcc--cCeeEEEEcC-------------
Confidence 9966 78999999999999999975322 112568899 8 8999999941
Q ss_pred ccccccCccccCCCCcEEEEEecceeEEEEEEE
Q 001391 873 EEINRQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1088)
Q Consensus 873 ~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~ 905 (1088)
+.. |+|+|.|++|++|.+
T Consensus 592 --------------d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 592 --------------ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp --------------TTE-EEEEETTSCEEEEEC
T ss_pred --------------CCE-EEEecCCCCEEEEec
Confidence 244 999999999999986
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-53 Score=517.84 Aligned_cols=506 Identities=15% Similarity=0.145 Sum_probs=380.0
Q ss_pred CCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--eeEEEEeeeCCcceEEEE
Q 001391 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 3 d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~~~~~~~~~~~~~V~~i~ 72 (1088)
+++|++|++.+++ |.++|++++|+ |+ +++||+|+ |++|+|||+.++ .....+..|.+ .|.+++
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~s--pd----g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~-~v~~v~ 110 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS--PS----GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-PVKDIS 110 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-CEEEEE
T ss_pred CCEEEEecCCCcccCeEecCCCCceEEEEEC--CC----CcEEEEEeCCCCEEEeECCCCcceeeEeecccCC-ceEEEE
Confidence 4679999998765 67889999999 99 99999998 799999999754 34556777666 799999
Q ss_pred ecccccccCCCccceeeEEEEEC-C----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 73 CNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~g-d----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
|+ |++ ..|++.+ + +.|++||.. +....+.+|.+.|++++|+| ++
T Consensus 111 fs-------~dg----~~l~~~~~~~~~~~~v~~wd~~-----------------~~~~~l~gh~~~v~~v~f~p---~~ 159 (611)
T 1nr0_A 111 WD-------SES----KRIAAVGEGRERFGHVFLFDTG-----------------TSNGNLTGQARAMNSVDFKP---SR 159 (611)
T ss_dssp EC-------TTS----CEEEEEECCSSCSEEEEETTTC-----------------CBCBCCCCCSSCEEEEEECS---SS
T ss_pred EC-------CCC----CEEEEEECCCCceeEEEEeeCC-----------------CCcceecCCCCCceEEEECC---CC
Confidence 99 887 4555544 3 367777632 34456789999999999999 87
Q ss_pred C-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 148 R-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 148 ~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
. .|++|+.|++|++||..+++....+..|.. .+++++| +|++.+|++|+.|++|++||+.
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~f---spdg~~las~s~D~~i~lwd~~--------------- 220 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRY---NPDGSLFASTGGDGTIVLYNGV--------------- 220 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------
T ss_pred CeEEEEEeCCCeEEEEECCCCeEeeeeccccC-ceEEEEE---CCCCCEEEEEECCCcEEEEECC---------------
Confidence 6 699999999999999999888888877654 4677777 6889999999999999999987
Q ss_pred CCCCCCCCceeEecccccceeeeEEEe-------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.+++. ...+
T Consensus 221 ------------------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-----~~~~ 277 (611)
T 1nr0_A 221 ------------------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-----EKTI 277 (611)
T ss_dssp ------------------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEE
T ss_pred ------------------CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----eeee
Confidence 444555553 7999999999999999999999999999999988643 1111
Q ss_pred eceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 300 GSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
. ....+...+..+.|.+..+++++.|+++++|+. .++....+.+|.. .|++++|+|++++|++++.|++|++||+.
T Consensus 278 ~--~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 278 P--VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp E--CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred c--CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 1 112344567788888899999999999999999 6677788899988 79999999999999999999999999995
Q ss_pred CCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEe
Q 001391 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1088)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~ 458 (1088)
...... .....|...|.+++|++++.++.++.++.+..|++.......- ..
T Consensus 355 ~~~~~~----------------------------~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~-~~ 405 (611)
T 1nr0_A 355 TGISNR----------------------------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS-KA 405 (611)
T ss_dssp TCCEEE----------------------------CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT-SC
T ss_pred CCceee----------------------------ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccc-ce
Confidence 421100 0012456789999999999999999999888655433211000 00
Q ss_pred eeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEE
Q 001391 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (1088)
Q Consensus 459 ~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L 538 (1088)
..........++++.+ ++..++++ .++.+++|+ .+. .. .. . +...+. ..+++|+|++|
T Consensus 406 ~~~~~~~~~~~~~~s~--------dg~~~~~~-~~~~v~~~~--~~~-~~----~~--~--~~~~v~--~va~spdg~~l 463 (611)
T 1nr0_A 406 VANKLSSQPLGLAVSA--------DGDIAVAA-CYKHIAIYS--HGK-LT----EV--P--ISYNSS--CVALSNDKQFV 463 (611)
T ss_dssp CEEECSSCEEEEEECT--------TSSCEEEE-ESSEEEEEE--TTE-EE----EE--E--CSSCEE--EEEECTTSCEE
T ss_pred eeeecCCCCcEEEEeC--------CCcEEEEE-eCceEEEEe--CCc-ee----ee--e--cCCCce--EEEEeCCCCEE
Confidence 0001112344555533 33556655 467899997 221 10 11 1 111122 25799999999
Q ss_pred EEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccc
Q 001391 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKS 618 (1088)
Q Consensus 539 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~ 618 (1088)
++|+.|+.|++||+.... +..... .+|...|++++|||||++||+|+.|++|++|++.+...
T Consensus 464 asgs~D~~v~lwd~~~~~------------~~~~~~--~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~---- 525 (611)
T 1nr0_A 464 AVGGQDSKVHVYKLSGAS------------VSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---- 525 (611)
T ss_dssp EEEETTSEEEEEEEETTE------------EEEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE----
T ss_pred EEeCCCCeEEEEEccCCc------------eeeeec--cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc----
Confidence 999999999999987431 111112 46899999999999999999999999999999875211
Q ss_pred cccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeec
Q 001391 619 VALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 619 ~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
+... ...+.|. ..|++|+|+ +++.+|+|++.|++|++|+++.
T Consensus 526 ------~~~~-~~~~~H~-~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 526 ------LAHT-NSWTFHT-AKVACVSWS---PDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp ------ESCC-CCCCCCS-SCEEEEEEC---TTSSEEEEEETTSCEEEEETTC
T ss_pred ------eeee-eeeeecc-cceeEEEEC---CCCCEEEEEECCCcEEEEECCC
Confidence 1000 0123243 589999999 7889999999999999999865
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-51 Score=497.52 Aligned_cols=492 Identities=17% Similarity=0.276 Sum_probs=390.9
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.|++|+|||. +++ |.++|++|+|+ || +++|++|+ |++|+|||. +++++..+..|.. .|.+++
T Consensus 35 ~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fs--pd----g~~las~~~d~~i~vWd~-~~~~~~~~~~~~~-~v~~~~ 105 (577)
T 2ymu_A 35 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS--PD----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVA 105 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECCSSCEEEEEEC--TT----SSEEEEEETTSCEEEEET-TSCEEEEECCCSS-CEEEEE
T ss_pred eCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEEC--CC----CCEEEEEeCCCEEEEEEC-CCCEEEEEECCCC-CEEEEE
Confidence 46899999996 444 67899999999 99 89999988 799999995 6788999998776 799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
|+ |+++ .+++++.|+.+++|+.. ........+|...|.++.++| ++..+++
T Consensus 106 ~s-------~d~~---~l~~~~~d~~~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 156 (577)
T 2ymu_A 106 FS-------PDGQ---TIASASDDKTVKLWNRN----------------GQLLQTLTGHSSSVWGVAFSP---DGQTIAS 156 (577)
T ss_dssp EC-------TTSS---EEEEEETTSCEEEEETT----------------CCEEEEECCCSSCEEEEEECT---TSSCEEE
T ss_pred EC-------CCCC---EEEEEcCCCceeecccc----------------cceeeeccCCCCceeeeeeec---CCcccee
Confidence 99 7773 55555669999999976 244566778999999999999 9999999
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
++.++.+++|+..... ......+. ..++.+.+ ++++.+|++++.|+.|++||..
T Consensus 157 ~~~~~~~~~~~~~~~~-~~~~~~~~-~~v~~~~~---~~~~~~l~~~~~d~~v~~w~~~--------------------- 210 (577)
T 2ymu_A 157 ASDDKTVKLWNRNGQL-LQTLTGHS-SSVWGVAF---SPDGQTIASASDDKTVKLWNRN--------------------- 210 (577)
T ss_dssp EETTSEEEEECTTSCE-EEEEECCS-SCEEEEEE---CTTSSCEEEEETTSEEEEECTT---------------------
T ss_pred cccccceeccccceee-eeeccCCC-cceeeeee---cCCCCEEEEEcCCCEEEEEeCC---------------------
Confidence 9999999999965443 33333333 33455555 6889999999999999999964
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
++.+..+.+|...|.+++|+|++++|++++.|+.|++||... +.+. .+.+|...|.
T Consensus 211 -------------~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~---------~~~~--~~~~~~~~v~ 266 (577)
T 2ymu_A 211 -------------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------QLLQ--TLTGHSSSVN 266 (577)
T ss_dssp -------------SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---------CEEE--EECCCSSCEE
T ss_pred -------------CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC---------CEEE--EEecCCCCEE
Confidence 456778899999999999999999999999999999999654 3343 7789999999
Q ss_pred EEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCcc
Q 001391 313 DCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPE 390 (1088)
Q Consensus 313 ~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~ 390 (1088)
+++|+ +..+++++.|+++++|+.+++.+..+.+|.. .|++++|+|++++|++++.|+.|++|+..+..+.
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~------- 338 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ------- 338 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-------
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-------
Confidence 99998 5799999999999999999999999999998 7999999999999999999999999998643221
Q ss_pred ccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEeccCCcceeEEeeeecCCcceEE
Q 001391 391 AKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIIC 469 (1088)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 469 (1088)
.+..+...+.+++|+|++.+++ ++.+|.+..|+. .. +.......+ ..++.+
T Consensus 339 -----------------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~---~~-~~~~~~~~~-~~~v~~ 390 (577)
T 2ymu_A 339 -----------------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR---NG-QLLQTLTGH-SSSVRG 390 (577)
T ss_dssp -----------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET---TC-CEEEEEECC-SSCEEE
T ss_pred -----------------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC---CC-CEEEEecCC-CCCeEE
Confidence 2234556799999999986655 566777775542 22 212233333 567888
Q ss_pred EecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEE
Q 001391 470 MDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKL 549 (1088)
Q Consensus 470 l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~v 549 (1088)
+++.++ ++++++++.|+.|++|+... +... .. ..+...+.. .+++|++++|++++.|+.|++
T Consensus 391 ~~~s~d--------g~~l~~~~~d~~v~~~~~~~-~~~~----~~---~~~~~~v~~--~~~s~d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 391 VAFSPD--------GQTIASASDDKTVKLWNRNG-QLLQ----TL---TGHSSSVWG--VAFSPDDQTIASASDDKTVKL 452 (577)
T ss_dssp EEECTT--------SSCEEEEETTSEEEEECTTC-CEEE----EE---ECCSSCEEE--EEECTTSSEEEEEETTSEEEE
T ss_pred EEECCC--------CCEEEEEeCCCEEEEEeCCC-CEEE----Ee---cCCCCCeEE--EEECCCCCEEEEEcCCCEEEE
Confidence 888554 48999999999999998532 2111 11 122223333 468999999999999999999
Q ss_pred EecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcce
Q 001391 550 WQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLN 629 (1088)
Q Consensus 550 wd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~ 629 (1088)
|++... +... ..+|...|++++|+|++++||+|+.|++|+||+.+.. ...
T Consensus 453 w~~~~~---------------~~~~-~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~--------------~~~ 502 (577)
T 2ymu_A 453 WNRNGQ---------------LLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------LLQ 502 (577)
T ss_dssp EETTSC---------------EEEE-EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC--------------EEE
T ss_pred EECCCC---------------EEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC--------------EEE
Confidence 996522 1122 2378999999999999999999999999999996531 133
Q ss_pred eecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEe
Q 001391 630 YFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 630 ~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
.+.+|. ..|++|+|+ +++.+|++++.||.|++|++
T Consensus 503 ~~~~h~--~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 503 TLTGHS--SSVRGVAFS---PDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEECCS--SCEEEEEEC---TTSSCEEEEETTSEEEEECT
T ss_pred EEeCCC--CCEEEEEEc---CCCCEEEEEECcCEEEEEeC
Confidence 455555 579999998 67789999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=476.98 Aligned_cols=581 Identities=13% Similarity=0.122 Sum_probs=448.2
Q ss_pred eEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC----eeEEEEeeeCCcc-eEEEEecccccccC
Q 001391 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFHGIR-LHGISCNFINCTEG 81 (1088)
Q Consensus 7 ~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg----~~~~~~~~~~~~~-V~~i~~s~~~~~~~ 81 (1088)
.+|......|.+.|++++|+ |+ +++|+++.++.|+|||+.++ +.+..+.+|.. . |.+++|+
T Consensus 8 ~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~s------- 73 (615)
T 1pgu_A 8 EIIPPQPSTQRNFTTHLSYD--PT----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFS------- 73 (615)
T ss_dssp EEECCCCCCCTTCCCCCEEE--TT----TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEEC-------
T ss_pred hccCCCCCCccCceeEEEEC--CC----CCEEEEecCCeEEEEECCCCCCccccceEEecCCC-ceEEEEEEC-------
Confidence 44555555578899999999 99 89999999999999999999 89999998776 7 9999999
Q ss_pred C--CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC---
Q 001391 82 S--VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--- 156 (1088)
Q Consensus 82 ~--d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D--- 156 (1088)
| +++ .+++++.|++|+||++..... ......+....+.+|...|.+++|+| ++++|++++.+
T Consensus 74 p~~~~~---~l~s~~~dg~v~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~ 140 (615)
T 1pgu_A 74 PIKGSQ---YLCSGDESGKVIVWGWTFDKE-------SNSVEVNVKSEFQVLAGPISDISWDF---EGRRLCVVGEGRDN 140 (615)
T ss_dssp SSTTCC---EEEEEETTSEEEEEEEEEEGG-------GTEEEEEEEEEEECCSSCEEEEEECT---TSSEEEEEECCSSC
T ss_pred cCCCCC---EEEEecCCCEEEEEeCCCCcc-------cccccccccchhhcccccEEEEEEeC---CCCEEEEeccCCCC
Confidence 7 772 444445599999999964310 00001466778889999999999999 99999999987
Q ss_pred -CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 157 -NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 157 -g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
+.|++|| .++.+..+..+.. .+.++.+ ++++. ++++++.|+.|++||+.
T Consensus 141 ~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~----------------------- 191 (615)
T 1pgu_A 141 FGVFISWD--SGNSLGEVSGHSQ-RINACHL---KQSRPMRSMTVGDDGSVVFYQGP----------------------- 191 (615)
T ss_dssp SEEEEETT--TCCEEEECCSCSS-CEEEEEE---CSSSSCEEEEEETTTEEEEEETT-----------------------
T ss_pred ccEEEEEE--CCCcceeeecCCc-cEEEEEE---CCCCCcEEEEEeCCCcEEEEeCC-----------------------
Confidence 6788887 6667777766544 4667776 56676 89999999999999998
Q ss_pred ceeEecccccceeeeEEEeCCCC---CEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee-e---c
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-Y---G 306 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~---~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~---~ 306 (1088)
..+.+..+.+|.. .|.+++|+|+ ++++++++.|+.|++||+.+++ .+. .+ . +
T Consensus 192 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~--~~~~~~~~ 251 (615)
T 1pgu_A 192 ----------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--------FLK--YIEDDQEP 251 (615)
T ss_dssp ----------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--------EEE--ECCBTTBC
T ss_pred ----------CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------EeE--Eecccccc
Confidence 7788888999999 9999999999 9999999999999999998853 332 34 4 8
Q ss_pred cCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccC---CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCC
Q 001391 307 HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI---GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 307 h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~---~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~ 381 (1088)
|...|.+++|+ +.+|++++.|+.|++||+ +++.+..+..+. ...+.++.+. ++.++++++.||.|++||+...
T Consensus 252 ~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~- 329 (615)
T 1pgu_A 252 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD- 329 (615)
T ss_dssp CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE-
T ss_pred cCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC-
Confidence 99999999996 789999999999999999 688888887762 1258888886 8899999999999999998531
Q ss_pred CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeee
Q 001391 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQV 461 (1088)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~ 461 (1088)
..+..+..|...|++++| |+ +++++.+|.+. +|+.. .+. .
T Consensus 330 ----------------------------~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~---~w~~~-----~~~-~ 369 (615)
T 1pgu_A 330 ----------------------------EVLKTISGHNKGITALTV-NP--LISGSYDGRIM---EWSSS-----SMH-Q 369 (615)
T ss_dssp ----------------------------EEEEEECCCSSCEEEEET-TT--TEEEETTSCEE---ETTTT-----EEE-C
T ss_pred ----------------------------cEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEE---EEEch-----hhc-C
Confidence 112234456678999999 87 88889999988 55544 122 4
Q ss_pred cCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEE
Q 001391 462 SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (1088)
Q Consensus 462 ~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~ 541 (1088)
.+...+.++++ + .++.+++++.|+.+++|++....... ... ..++++++.+++++
T Consensus 370 ~~~~~v~~~~~-~--------~~~~l~~~~~d~~i~~~~~~~~~~~~--------------~~~--~~~~s~~~~~~~~~ 424 (615)
T 1pgu_A 370 DHSNLIVSLDN-S--------KAQEYSSISWDDTLKVNGITKHEFGS--------------QPK--VASANNDGFTAVLT 424 (615)
T ss_dssp CCCSCEEEEEC-C--------STTCCEEEETTTEEEETTEEEEECSS--------------CEE--EEEECSSSEEEEEE
T ss_pred cccCceEEEEE-C--------CCcEEEEEeCCCCEEEEEcccCcccC--------------Cce--EEEEcCCCCEEEEe
Confidence 44678888887 2 23689999999999999987654321 111 24688999998887
Q ss_pred CCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcC-CCcEEEEeCCcccccccccc
Q 001391 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL-RGNLVLFPLLRDLLNDKSVA 620 (1088)
Q Consensus 542 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~-dg~I~Iw~~~~~~~~~~~~~ 620 (1088)
.++.+++|++.... ....+ .|...+++++|+ +++|++|+. ||.|++|++.....
T Consensus 425 -~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~------ 479 (615)
T 1pgu_A 425 -NDDDLLILQSFTGD--------------IIKSV--RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEV------ 479 (615)
T ss_dssp -TTSEEEEEETTTCC--------------EEEEE--ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEE------
T ss_pred -CCCceEEEeccCCc--------------eeeec--ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccc------
Confidence 78899999986442 11222 367889999999 899999999 99999999986421
Q ss_pred cccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCcc
Q 001391 621 LHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSI 700 (1088)
Q Consensus 621 ~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~ 700 (1088)
.. ..+.+|. ..|++++|+ +++.+|++++.||.|++|++..... +.
T Consensus 480 -----~~-~~~~~~~--~~v~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~---------~~--------------- 524 (615)
T 1pgu_A 480 -----SF-DLKTPLR--AKPSYISIS---PSETYIAAGDVMGKILLYDLQSREV---------KT--------------- 524 (615)
T ss_dssp -----EE-ECSSCCS--SCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEE---------EE---------------
T ss_pred -----cc-cccCCcc--CceEEEEEC---CCCCEEEEcCCCCeEEEeeCCCCcc---------ee---------------
Confidence 11 2333343 579999998 6789999999999999999864310 00
Q ss_pred CcccceEEEeeecccEEEEeCCcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCccccccc
Q 001391 701 DLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNL 780 (1088)
Q Consensus 701 ~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~ 780 (1088)
.
T Consensus 525 ------------------------------------------------------------------------------~- 525 (615)
T 1pgu_A 525 ------------------------------------------------------------------------------S- 525 (615)
T ss_dssp ------------------------------------------------------------------------------C-
T ss_pred ------------------------------------------------------------------------------E-
Confidence 0
Q ss_pred ccccCcceEEEEEEeccccccccccccccCCCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeee
Q 001391 781 HMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSE 860 (1088)
Q Consensus 781 ~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~ 860 (1088)
..+.|...|++++|++...... ....++++||||++|++|+||++.... .....+.+|. ..|++++|.+
T Consensus 526 ~~~~h~~~v~~~~~sp~~~~~~-----~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~h~--~~v~~l~~s~- 594 (615)
T 1pgu_A 526 RWAFRTSKINAISWKPAEKGAN-----EEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHK--DGVNNLLWET- 594 (615)
T ss_dssp CSCCCSSCEEEEEECCCC-----------CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSST--TCEEEEEEEE-
T ss_pred eecCCCCceeEEEEcCcccccc-----ccccCCCEEEEEcCCCcEEEEECCCCc---eechhhhcCc--cceEEEEEcC-
Confidence 0113889999999986100000 000137899999999999999997632 3567789999 9999999951
Q ss_pred eeeccccccCccccccccCccccCCCCcEEEEEecceeEEEEEEEEe
Q 001391 861 INQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRH 907 (1088)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~~~ 907 (1088)
++. |+|+|.|+.|++|.++.
T Consensus 595 --------------------------~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 --------------------------PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --------------------------TTE-EEEEETTSCEEEEEEC-
T ss_pred --------------------------CCC-eEEecCCceEEEEeeec
Confidence 345 99999999999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=499.37 Aligned_cols=629 Identities=14% Similarity=0.197 Sum_probs=454.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+.|++++|+ |+ +++|++|+ |++|+|||+.+++.+..+..|.+ .|.+++|+ |+++ .+++++
T Consensus 614 h~~~v~~~~~s--~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~s~~ 676 (1249)
T 3sfz_A 614 HTDAVYHACFS--QD----GQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFS-------SDDS---YIATCS 676 (1249)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred ccccEEEEEEC--CC----CCEEEEEeCCCeEEEEECCCCCEEEEeccCCC-CEEEEEEe-------cCCC---EEEEEe
Confidence 67899999999 99 89999988 79999999999999999998776 79999999 7773 455555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|++|+|||+.. .+.+..+.+|...|.+++|+| +.++.++++|+.|+.|++||+.+++.+..+.
T Consensus 677 ~d~~v~vwd~~~---------------~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~ 740 (1249)
T 3sfz_A 677 ADKKVKIWDSAT---------------GKLVHTYDEHSEQVNCCHFTN-KSNHLLLATGSNDFFLKLWDLNQKECRNTMF 740 (1249)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS-SSSCCEEEEEETTSCEEEEETTSSSEEEEEC
T ss_pred CCCeEEEEECCC---------------CceEEEEcCCCCcEEEEEEec-CCCceEEEEEeCCCeEEEEECCCcchhheec
Confidence 699999999985 457788889999999999999 2234589999999999999999999998887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+.. .+.++++ ++++..+++|+.||.|++||+.+.+..... ..... ..........
T Consensus 741 ~h~~-~v~~~~~---sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~------------------~~~~~--~~~~~~~~~~ 796 (1249)
T 3sfz_A 741 GHTN-SVNHCRF---SPDDELLASCSADGTLRLWDVRSANERKSI------------------NVKRF--FLSSEDPPED 796 (1249)
T ss_dssp CCSS-CEEEEEE---CSSTTEEEEEESSSEEEEEEGGGTEEEEEE------------------ECCCC--C--------C
T ss_pred CCCC-CEEEEEE---ecCCCEEEEEECCCeEEEEeCCCCccccee------------------ccccc--ccccCCcccc
Confidence 7655 3566666 678999999999999999999822111000 00000 0000001123
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
+...+.+++|+|+++.+++++ ++.+.+||+.++. .+. ....+|...|.+++|+ +.++++++.||.|++
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~--------~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSG--------LLA-EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCC--------EEE-EEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred ccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCC--------cee-EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence 345788999999999999987 6899999998853 232 1445899999999998 689999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccc
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1088)
|++ ++..+..+.+|.+ .|++++|+|++++|++++.||.|++|++......... ..
T Consensus 867 wd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~-------------~~---------- 922 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI-------------VL---------- 922 (1249)
T ss_dssp EETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS-------------SE----------
T ss_pred EEcCCCceeeecCCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee-------------cc----------
Confidence 999 7888899999998 7999999999999999999999999998431100000 00
Q ss_pred eeeccCCCCceEEEEeccCCeEEEE-ecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEe
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~-t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1088)
.......+.+++..++. ...+.+..+. ...... .......+.++++.+. ++++++|
T Consensus 923 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~i~~~~~sp~--------g~~l~~g 979 (1249)
T 3sfz_A 923 --------KQEIDVVFQENETMVLAVDNIRGLQLIA---GKTGQI----DYLPEAQVSCCCLSPH--------LEYVAFG 979 (1249)
T ss_dssp --------EEEEEEEEETTEEEEEEEESSSSEEEEE---ESSCCE----EEECCSCEEEEEECTT--------SSEEEEE
T ss_pred --------cceeeEEEcCCCcEEEEecCCcceEEEe---cCcceE----EEcccCcEEEEEEcCC--------CCEEEEE
Confidence 01122333333333332 3333333222 112111 1112456778877554 4899999
Q ss_pred cCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCccccee
Q 001391 491 DGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570 (1088)
Q Consensus 491 ~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 570 (1088)
+.+|.|++|++.++..... ...+...+.. .++++++++|++++.||.|++|++....
T Consensus 980 ~~~g~i~i~d~~~~~~~~~-------~~~h~~~v~~--l~~s~dg~~l~s~~~dg~i~vwd~~~~~-------------- 1036 (1249)
T 3sfz_A 980 DEDGAIKIIELPNNRVFSS-------GVGHKKAVRH--IQFTADGKTLISSSEDSVIQVWNWQTGD-------------- 1036 (1249)
T ss_dssp ETTSCCEEEETTTTSCEEE-------CCCCSSCCCC--EEECSSSSCEEEECSSSBEEEEETTTTE--------------
T ss_pred cCCCCEEEEEcCCCceeee-------cccCCCceEE--EEECCCCCEEEEEcCCCEEEEEECCCCc--------------
Confidence 9999999999987653221 1122222333 4689999999999999999999998542
Q ss_pred eeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccC
Q 001391 571 LVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRS 650 (1088)
Q Consensus 571 l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~ 650 (1088)
.. ....|...|.+++++|++ .+++++.||+|++||+.++. ....+.+|. ..|++++|+ +
T Consensus 1037 ~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~-------------~~~~~~~~~--~~v~~~~~s---~ 1095 (1249)
T 3sfz_A 1037 YV--FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR-------------IERDFTCHQ--GTVLSCAIS---S 1095 (1249)
T ss_dssp EE--CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTC-------------CCEEEECCS--SCCCCEEEC---S
T ss_pred eE--EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCc-------------eeEEEcccC--CcEEEEEEC---C
Confidence 11 133688999999999966 56789999999999998642 233455555 479999998 6
Q ss_pred CceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEE
Q 001391 651 NQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQI 730 (1088)
Q Consensus 651 ~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~ 730 (1088)
++.+|++++.||+|++|++..+.....+.. + ...+..+.+.+ ++.+++.|..++.+.+||..+...+...
T Consensus 1096 d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~----h-~~~v~~~~~s~-----dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKG----H-NGCVRCSAFSL-----DGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp SSSSCEEECCSSCCCEECSSSSSCSBCCCC----C-SSCEEEEEECS-----SSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred CCCEEEEEcCCCcEEEEECCCcceeeeecc----C-CCcEEEEEECC-----CCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 778899999999999999976543222111 1 23455555542 4667889999999999998664421110
Q ss_pred eeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccC
Q 001391 731 PCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL 810 (1088)
Q Consensus 731 ~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~ 810 (1088)
. ++ ........|...|++++|+++
T Consensus 1166 ~------~~-------------------------------------~~~~~~~~~~~~v~~l~fs~d------------- 1189 (1249)
T 3sfz_A 1166 A------PI-------------------------------------SVEEGTATHGGWVTDVCFSPD------------- 1189 (1249)
T ss_dssp C------CC-------------------------------------C-------CCSCCCEEEECTT-------------
T ss_pred c------cc-------------------------------------cccccccccCceEEEEEECCC-------------
Confidence 0 00 001112478999999999965
Q ss_pred CCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEE
Q 001391 811 NKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFL 890 (1088)
Q Consensus 811 ~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 890 (1088)
+.+|++++ |+|++|++..+ .....+..|. ..|+++.|. .++.+
T Consensus 1190 --g~~l~s~~--g~v~vwd~~~g----~~~~~~~~~~--~~i~~~~~s---------------------------~dg~~ 1232 (1249)
T 3sfz_A 1190 --SKTLVSAG--GYLKWWNVATG----DSSQTFYTNG--TNLKKIHVS---------------------------PDFRT 1232 (1249)
T ss_dssp --SSCEEEES--SSEEEBCSSSC----BCCCCCCCSS--CCCCCCEEC---------------------------SSSCC
T ss_pred --CCEEEECC--CeEEEEECCCC----ceeeeeeccC--CcccEEEEC---------------------------CCCCE
Confidence 67888886 89999999763 3466778888 889999983 34567
Q ss_pred EEEecceeEEEEEEE
Q 001391 891 LISVGAKRVLTSWLL 905 (1088)
Q Consensus 891 l~s~g~d~~i~~W~~ 905 (1088)
|++++.|+.|.+|.+
T Consensus 1233 l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1233 YVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEEECTTCCEEEECC
T ss_pred EEEecCCcEEEEEee
Confidence 899999999999976
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-46 Score=456.17 Aligned_cols=487 Identities=13% Similarity=0.140 Sum_probs=379.4
Q ss_pred CCCceEEecCCC----c-------eeee-eEEEEEeccC--CCCCCCCEEEEEe-CCeEEEEECCCC--------eeEEE
Q 001391 3 KKDLSEWRLDVG----Q-------YLGE-ISALCFVHLP--SHLSSLPFLLAGS-GSQVLLYDLEAG--------TLIRP 59 (1088)
Q Consensus 3 d~~i~iWdl~~g----~-------~~~~-V~~v~fs~~p--d~~~~~~~laag~-d~~I~vwd~~tg--------~~~~~ 59 (1088)
|+.|++||+.++ + |.++ |++++|+ | + +++|++|+ |+.|+|||+.++ +.+..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~s--p~~~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 111 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS--PIKG----SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 111 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEEC--SSTT----CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEEC--cCCC----CCEEEEecCCCEEEEEeCCCCcccccccccccch
Confidence 678999999988 4 6678 9999999 9 9 89999988 799999999855 67777
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEECC----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I 135 (1088)
+..|.. .|.+++|+ |+++ .+++++.+ +.|.+|+. .+.+..+.+|...|
T Consensus 112 ~~~~~~-~v~~~~~s-------~~~~---~l~~~~~~~~~~~~v~~~d~-----------------~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 112 FQVLAG-PISDISWD-------FEGR---RLCVVGEGRDNFGVFISWDS-----------------GNSLGEVSGHSQRI 163 (615)
T ss_dssp EECCSS-CEEEEEEC-------TTSS---EEEEEECCSSCSEEEEETTT-----------------CCEEEECCSCSSCE
T ss_pred hhcccc-cEEEEEEe-------CCCC---EEEEeccCCCCccEEEEEEC-----------------CCcceeeecCCccE
Confidence 777665 79999999 7773 44444444 57888872 24667788999999
Q ss_pred EEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCce--eEEEEeeecCCCC-CcEEEEEecCCeEEEEEec
Q 001391 136 FDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERC--LLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 136 ~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~--~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~ 211 (1088)
.+++|+| +++ ++++++.|+.|++||+.+++.+..+..+... .+.++++ +++ +.+|++++.||.|++||+.
T Consensus 164 ~~~~~~~---~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 164 NACHLKQ---SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEEECS---SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE---CSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEEECC---CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE---CCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999 887 8999999999999999999998888766541 4667776 678 8999999999999999998
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-e---CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~---gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
+++.+..+ . +|...|.+++|+ +++++++++.|+.|++||+.+
T Consensus 238 ---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 238 ---------------------------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp ---------------------------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred ---------------------------------CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence 66677777 5 899999999999 999999999999999999988
Q ss_pred CcccCCCCceeeeceeeecc----CcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 288 EYWKDSDSIEEVGSSVLYGH----NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h----~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
++ .+. .+..+ ...+.++.+. +.++++++.||.|++||+ .++.+..+.+|.. +|.+++| |+
T Consensus 284 ~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~-~~-- 349 (615)
T 1pgu_A 284 SK--------CVQ--KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK-GITALTV-NP-- 349 (615)
T ss_dssp TE--------EEE--EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSS-CEEEEET-TT--
T ss_pred Cc--------EEE--EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC-CEEEEEe-cC--
Confidence 53 332 33333 4678888886 899999999999999999 6788889999998 7999999 88
Q ss_pred EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCe
Q 001391 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~ 441 (1088)
|++++.||.|++|++. . +. ..|...|.+++|.+++.+++++.++.
T Consensus 350 -l~~~~~dg~i~~w~~~--~------------------------------~~--~~~~~~v~~~~~~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 350 -LISGSYDGRIMEWSSS--S------------------------------MH--QDHSNLIVSLDNSKAQEYSSISWDDT 394 (615)
T ss_dssp -TEEEETTSCEEETTTT--E------------------------------EE--CCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred -cEEECCCCeEEEEEch--h------------------------------hc--CcccCceEEEEECCCcEEEEEeCCCC
Confidence 9999999999999884 0 11 23556899999966778888889998
Q ss_pred EEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeecccc
Q 001391 442 LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIE 521 (1088)
Q Consensus 442 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~ 521 (1088)
+. +|+...... .....++++.++ +.+++++ .++.+.+|++.+++..... . ..
T Consensus 395 i~---~~~~~~~~~--------~~~~~~~~~s~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~------~--~~ 446 (615)
T 1pgu_A 395 LK---VNGITKHEF--------GSQPKVASANND--------GFTAVLT-NDDDLLILQSFTGDIIKSV------R--LN 446 (615)
T ss_dssp EE---ETTEEEEEC--------SSCEEEEEECSS--------SEEEEEE-TTSEEEEEETTTCCEEEEE------E--CS
T ss_pred EE---EEEcccCcc--------cCCceEEEEcCC--------CCEEEEe-CCCceEEEeccCCceeeec------c--cC
Confidence 88 444332211 114555666443 3666666 7889999998665432211 1 11
Q ss_pred ceeeeEEEeecCCCeEEEEECC-CCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcC
Q 001391 522 RQLLGTYWCKSLGHRFIFTADP-KGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (1088)
Q Consensus 522 ~~~~~~~~~~s~dg~~L~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~ 600 (1088)
..+.. .+++ +++|++++. |+.|++||+.... +.......|...|++++|+|++++|++|+.
T Consensus 447 ~~~~~--~~~~--~~~l~~~~~~d~~i~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 447 SPGSA--VSLS--QNYVAVGLEEGNTIQVFKLSDLE--------------VSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp SCEEE--EEEC--SSEEEEEETTTSCEEEEETTEEE--------------EEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCceE--EEEc--CCEEEEeecCCCeEEEEECCCcc--------------ccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 11222 3445 889999999 9999999997431 110113468999999999999999999999
Q ss_pred CCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEecc-------CCceEEEEecCCCeEEEEEeecC
Q 001391 601 RGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 601 dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~-------~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
||.|++|++.+... ...+.+.|. ..|++++|++.. .++.+|++++.||.|++|+++..
T Consensus 509 dg~i~iw~~~~~~~-------------~~~~~~~h~-~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 509 MGKILLYDLQSREV-------------KTSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp TSCEEEEETTTTEE-------------EECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCeEEEeeCCCCcc-------------eeEeecCCC-CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 99999999986421 233444244 689999999310 07789999999999999998653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-46 Score=495.83 Aligned_cols=509 Identities=16% Similarity=0.214 Sum_probs=389.7
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.||+|++||+.+++ |.++|++++|+ |+ +++|++|+ |++|+|||+.+++++..+..|.. .|.+++
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s--~~----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~ 706 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS--SD----DSYIATCSADKKVKIWDSATGKLVHTYDEHSE-QVNCCH 706 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEE
T ss_pred eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEe--cC----CCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEE
Confidence 468999999999987 67889999999 99 89999988 79999999999999999998766 799999
Q ss_pred ecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|+|. .++ .++++ +.|+.|++||+.. .+....+.+|.+.|.+++|+| ++++|+
T Consensus 707 ~~~~-----~~~----~~l~sg~~d~~v~vwd~~~---------------~~~~~~~~~h~~~v~~~~~sp---~~~~l~ 759 (1249)
T 3sfz_A 707 FTNK-----SNH----LLLATGSNDFFLKLWDLNQ---------------KECRNTMFGHTNSVNHCRFSP---DDELLA 759 (1249)
T ss_dssp ECSS-----SSC----CEEEEEETTSCEEEEETTS---------------SSEEEEECCCSSCEEEEEECS---STTEEE
T ss_pred EecC-----CCc----eEEEEEeCCCeEEEEECCC---------------cchhheecCCCCCEEEEEEec---CCCEEE
Confidence 9942 233 45544 4589999999985 456778889999999999999 999999
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccCC------------ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSPE------------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~~------------~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
+|+.||+|++||+.+++....+.... ...+.+++ +++++..+++++ ++.+.+||+.
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~dg~~l~~~~-~~~v~~~d~~-------- 827 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAA-KNKVLLFDIH-------- 827 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC---BCTTSSEEEEEE-TTEEEEEETT--------
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE---ECCCCCEEEEEc-CCcEEEEEec--------
Confidence 99999999999999988776654221 11222333 378899998887 7899999998
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCcee
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 298 (1088)
++..+..+. +|...|.+++|+|+++++++++.|+.|++||+.++ ..
T Consensus 828 -------------------------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~--------~~ 874 (1249)
T 3sfz_A 828 -------------------------TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--------LK 874 (1249)
T ss_dssp -------------------------TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT--------EE
T ss_pred -------------------------CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--------ce
Confidence 444454444 89999999999999999999999999999999885 33
Q ss_pred eeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCC-c-----------------------------eeEEEc--
Q 001391 299 VGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG-K-----------------------------QLKMIK-- 344 (1088)
Q Consensus 299 i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~-~-----------------------------~~~~~~-- 344 (1088)
+. .+.+|...|.+++|+ +.++++++.||++++|++.. . .+....
T Consensus 875 ~~--~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1249)
T 3sfz_A 875 VA--DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952 (1249)
T ss_dssp EE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES
T ss_pred ee--ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC
Confidence 43 778999999999998 67999999999999999621 0 000011
Q ss_pred ------ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCC
Q 001391 345 ------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (1088)
Q Consensus 345 ------~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (1088)
.+.. .+.+++++|+++++++|+.||.|++|++.... .......|
T Consensus 953 ~~~~~~~~~~-~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~-----------------------------~~~~~~~h 1002 (1249)
T 3sfz_A 953 TGQIDYLPEA-QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR-----------------------------VFSSGVGH 1002 (1249)
T ss_dssp SCCEEEECCS-CEEEEEECTTSSEEEEEETTSCCEEEETTTTS-----------------------------CEEECCCC
T ss_pred cceEEEcccC-cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc-----------------------------eeeecccC
Confidence 1223 69999999999999999999999999985321 11223356
Q ss_pred CCceEEEEeccCCeE-EEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEE
Q 001391 419 SEYVRCLHLTSEDTL-YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT 497 (1088)
Q Consensus 419 ~~~V~~l~~s~~~~l-l~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~ 497 (1088)
...|++++|+|++.+ ++++.+|.+..|++.. .... ....+...+.++.+.++ ..+++++.||.|+
T Consensus 1003 ~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~---~~~~--~~~~~~~~v~~~~~~~~---------~~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 1003 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---GDYV--FLQAHQETVKDFRLLQD---------SRLLSWSFDGTVK 1068 (1249)
T ss_dssp SSCCCCEEECSSSSCEEEECSSSBEEEEETTT---TEEE--CCBCCSSCEEEEEECSS---------SEEEEEESSSEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCC---CceE--EEecCCCcEEEEEEcCC---------CcEEEEECCCcEE
Confidence 678999999999864 4556788888665543 3322 22234567888887553 5789999999999
Q ss_pred EEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeecc
Q 001391 498 IVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577 (1088)
Q Consensus 498 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~ 577 (1088)
+|++.++..... +. .+...+.. .+++|++++|++++.||.|++||+..... ... ..
T Consensus 1069 vwd~~~~~~~~~----~~---~~~~~v~~--~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------~~~-l~ 1124 (1249)
T 3sfz_A 1069 VWNVITGRIERD----FT---CHQGTVLS--CAISSDATKFSSTSADKTAKIWSFDLLSP--------------LHE-LK 1124 (1249)
T ss_dssp EEETTTTCCCEE----EE---CCSSCCCC--EEECSSSSSCEEECCSSCCCEECSSSSSC--------------SBC-CC
T ss_pred EEECCCCceeEE----Ec---ccCCcEEE--EEECCCCCEEEEEcCCCcEEEEECCCcce--------------eee-ec
Confidence 999987764322 11 12222333 46899999999999999999999875431 112 23
Q ss_pred ccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcce---eecccccccceeEEEEEeccCCceE
Q 001391 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLN---YFKGAHGISTVSTLSVAKLRSNQTE 654 (1088)
Q Consensus 578 ~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~---~~~g~hg~~~Vtsv~~~~~~~~~~~ 654 (1088)
+|...|++++|+|++++||+|+.||+|++|++.++.. ...+.+.. ...+|. ..|++++|+ +++.+
T Consensus 1125 ~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~--~~v~~l~fs---~dg~~ 1192 (1249)
T 3sfz_A 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL-------LHSCAPISVEEGTATHG--GWVTDVCFS---PDSKT 1192 (1249)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC-------CCCCCCCC-------CC--SCCCEEEEC---TTSSC
T ss_pred cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------EEEeccccccccccccC--ceEEEEEEC---CCCCE
Confidence 6899999999999999999999999999999986532 11111111 112233 579999998 67788
Q ss_pred EEEecCCCeEEEEEeecC
Q 001391 655 IRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 655 l~t~g~Dg~i~iw~~~~~ 672 (1088)
|++++ |.+++|++..+
T Consensus 1193 l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1193 LVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp EEEES--SSEEEBCSSSC
T ss_pred EEECC--CeEEEEECCCC
Confidence 88886 89999998653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=451.00 Aligned_cols=512 Identities=10% Similarity=0.028 Sum_probs=342.3
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
-|.+.|++|+|+ |+ +++||+|+ |++|+|||..+++.+..+. +...|.+++|+ | ++ .++++
T Consensus 15 gh~~~V~~lafs--pd----g~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fs-------p-g~---~L~S~ 75 (902)
T 2oaj_A 15 GMSSKPIAAAFD--FT----QNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFV-------K-GI---YLVVI 75 (902)
T ss_dssp ECSSCEEEEEEE--TT----TTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEE-------T-TT---EEEEE
T ss_pred CCCCCcEEEEEC--CC----CCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEc-------C-CC---EEEEE
Confidence 367889999999 99 89999998 7999999998887765544 33479999999 7 52 46666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE-E
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL-E 172 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~-~ 172 (1088)
+.|++|+|||+... +.+..+. |.+.|++++|+| ++++|++|+.||+|++||+.+++... .
T Consensus 76 s~D~~v~lWd~~~~---------------~~~~~~~-~~~~V~~v~~sp---~g~~l~sgs~dg~V~lwd~~~~~~~~~~ 136 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQ---------------KVLTTVF-VPGKITSIDTDA---SLDWMLIGLQNGSMIVYDIDRDQLSSFK 136 (902)
T ss_dssp ETTCEEEEEETTTC---------------SEEEEEE-CSSCEEEEECCT---TCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ECcCeEEEEECCCC---------------cEEEEEc-CCCCEEEEEECC---CCCEEEEEcCCCcEEEEECCCCccccce
Confidence 67999999999853 3445554 678999999999 99999999999999999999887531 1
Q ss_pred e-------c--cCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 173 V-------H--SPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 173 ~-------~--~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
+ . ......+.++++. | ++..+++|+.||.| +||++
T Consensus 137 i~~~~~~~~~~~~h~~~V~sl~~s---p~~~~~l~~g~~dg~v-lWd~~------------------------------- 181 (902)
T 2oaj_A 137 LDNLQKSSFFPAARLSPIVSIQWN---PRDIGTVLISYEYVTL-TYSLV------------------------------- 181 (902)
T ss_dssp ECCHHHHHTCSSSCCCCCCEEEEE---TTEEEEEEEECSSCEE-EEETT-------------------------------
T ss_pred eccccccccccccCCCCeEEEEEc---cCCCCEEEEEeCCCcE-EEECC-------------------------------
Confidence 1 0 1122345667763 4 35789999999999 99998
Q ss_pred ccceeeeEEEeC------------------CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 243 QHTAVNLFRLVG------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 243 ~~~~~~~~~~~g------------------h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
..+.+..+.+ |...|.+++|+|+|++|++++.|++|++||+.+++. .........
T Consensus 182 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~-----~~~r~l~~~ 254 (902)
T 2oaj_A 182 --ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM-----IMARTVFET 254 (902)
T ss_dssp --TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE-----EEEECSSCS
T ss_pred --CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE-----EEEEeeccc
Confidence 3444444444 467899999999999999999999999999988643 110000000
Q ss_pred e-------------ccCcceEEEEEC----C---CEEEEEeCC-----CcEEEEcCC-------------------Ccee
Q 001391 305 Y-------------GHNARVWDCCLT----D---SFIITAGED-----CTCRVWGSD-------------------GKQL 340 (1088)
Q Consensus 305 ~-------------~h~~~I~~v~~~----~---~~l~sg~~D-----g~i~vWd~~-------------------~~~~ 340 (1088)
. .|...|.+++|+ + .++++|+.| ..+++|++. ++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce
Confidence 1 245579999994 2 467788776 378899841 2234
Q ss_pred EEEc-ccCCCCeEEEEEcC----------CCCEEEEEeCCCCEEEEEcCCC-CC-CcccCCccccccCCCcceEEeeeCC
Q 001391 341 KMIK-EHIGRGIWRCLYDS----------LSSLLVTAGFDSAIKVHQFQAF-LP-GSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 341 ~~~~-~h~~~~V~~l~~~~----------dg~~l~tg~~Dg~I~iwd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
..+. .+.+ .|..+.+.+ +...+++++.||.|++|++... .. .....
T Consensus 335 ~~~~~~~~~-~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~-------------------- 393 (902)
T 2oaj_A 335 KIFPLPTNV-PIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLF-------------------- 393 (902)
T ss_dssp EEECCSSSS-CEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGS--------------------
T ss_pred EEEecCCCC-ceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccC--------------------
Confidence 4443 3444 688888765 3447899999999999998422 11 00000
Q ss_pred CccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccC-----CcceeEEeeeecCCcceEEEecCCCCCCCcCC
Q 001391 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM-----DSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1088)
Q Consensus 408 ~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1088)
...+..+...|+++++++... .+|.. ....| .+.++. ..+..+++ .+
T Consensus 394 ----~~~l~~~~~~v~~~~~s~~~~-------------~~w~~~~~~~~~~~~--~l~G~~-~~v~sv~~--------sp 445 (902)
T 2oaj_A 394 ----PQNLSWLRPLATTSMAASVPN-------------KLWLGALSAAQNKDY--LLKGGV-RTKRQKLP--------AE 445 (902)
T ss_dssp ----CGGGTTBTTBEEEEEEEEEEH-------------HHHHHHHHTTBCCCC--SCCCSB-CCCCCCCC--------CS
T ss_pred ----CCcccccCCCeeEEEEEEcCH-------------HHHHHHHhcccCCCC--cccCCc-CCCCcccc--------cc
Confidence 011223445688888764210 01110 01111 223332 12222222 24
Q ss_pred CCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeee----ccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS----AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
+++++++|+.|++|++||+.++.+.....+..... ..+...+.. .+++|++++||+|+.||+|++|++...+..
T Consensus 446 dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s--vafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 446 YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK--ISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE--EEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE--EEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 56899999999999999998875322111111100 022222333 579999999999999999999999754210
Q ss_pred c--------c--ccC-----C----------------cccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEE
Q 001391 559 V--------C--YES-----S----------------KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLF 607 (1088)
Q Consensus 559 ~--------~--~~~-----~----------------~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw 607 (1088)
. . ... . -...+.+... ..+|...|++++||||| +||+|+.|++|+||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~h~~~V~svafSpdG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA-VHANKGKTSAINNSNIG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE-ECCCSCSEEEEEECBTS-EEEEEETTSEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEE-EEcCCCcEEEEEecCCc-EEEEEeCCCcEEEE
Confidence 0 0 000 0 0000122223 23699999999999999 99999999999999
Q ss_pred eCCcccccccccccccccCcceeec-ccccccceeEEEEE-----eccCCceEEEEecCCCeEEEEEe
Q 001391 608 PLLRDLLNDKSVALHVEVSPLNYFK-GAHGISTVSTLSVA-----KLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~hg~~~Vtsv~~~-----~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
|+..... ..+ ..+..+. +|. ..|++|+|+ +.+.++.+|++++.||+|++|++
T Consensus 602 d~~~~~~-------~~~-~~~~~~~~gh~--~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 602 DRRGPAI-------IYM-ENIREISGAQS--ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp ETTTTEE-------EEE-EEGGGTCSSCC--CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ECCCCeE-------EEE-eehhHhccccc--cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9875321 000 0112232 454 579999999 54444689999999999999999
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=430.03 Aligned_cols=512 Identities=11% Similarity=0.100 Sum_probs=334.0
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
.+|.+.|++++|+| ++++||+|+.||+|++|+..+.+....+. ....+.+++|. + +.+|++++.|++|++|
T Consensus 14 ~gh~~~V~~lafsp---dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fs---p-g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 14 YGMSSKPIAAAFDF---TQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFV---K-GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EECSSCEEEEEEET---TTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEE---T-TTEEEEEETTCEEEEE
T ss_pred cCCCCCcEEEEECC---CCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEc---C-CCEEEEEECcCeEEEE
Confidence 48999999999999 99999999999999999998877666543 23457777773 4 6699999999999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
|+. +++.+..+. |.+.|.+++|+|+++++++|+.||+|++||+.+.
T Consensus 85 d~~---------------------------------~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 85 SLY---------------------------------SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp ETT---------------------------------TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred ECC---------------------------------CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 998 556666665 7789999999999999999999999999999886
Q ss_pred cccCCCCceeeec-------eeeeccCcceEEEEECC---CEEEEEeCCCcEEEEcC-CCceeEEEccc-----------
Q 001391 289 YWKDSDSIEEVGS-------SVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEH----------- 346 (1088)
Q Consensus 289 ~~~~~~~~~~i~~-------~~~~~h~~~I~~v~~~~---~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h----------- 346 (1088)
.. ..... ....+|...|++++|++ ..+++|+.||+| +||+ .++.+..+..|
T Consensus 131 ~~------~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 131 QL------SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS 203 (902)
T ss_dssp EE------EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC
T ss_pred cc------ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc
Confidence 43 11100 13467999999999985 589999999999 9999 67777777765
Q ss_pred -------CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCC--ccc---CCccccccCCCcceEEeeeCCCcccee
Q 001391 347 -------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPG--SLE---SHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1088)
Q Consensus 347 -------~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1088)
.. .|++++|+|+|.+|++|+.||+|++||++. +.+. ++. .|. +.. ....
T Consensus 204 ~~~~~~h~~-~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~----------------~~~-~~~~ 265 (902)
T 2oaj_A 204 EKTNEKRTP-KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINV----------------PQP-DYIR 265 (902)
T ss_dssp CCTTSCBCC-CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTS----------------CCT-TCCC
T ss_pred cccccccCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCC----------------CCC-cCCC
Confidence 34 699999999999999999999999999954 2221 110 111 000 0000
Q ss_pred eccCCCCceEEEEec----cCC-eEEEEe-cC-----CeEEEEEeccCC---------------cceeEEeeeecCCcce
Q 001391 414 LTDSKSEYVRCLHLT----SED-TLYIAT-NH-----GYLYHTKLCDMD---------------SVNWNKILQVSEGMPI 467 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s----~~~-~ll~~t-~~-----g~i~~~~~~~~~---------------~~~~~~~~~~~~~~~i 467 (1088)
....+.+.|.+++|+ |++ .+++++ .+ ..+..+++.... ..+...++.......+
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v 345 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPI 345 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCE
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCce
Confidence 000134579999995 443 455544 22 245544431100 0011223222234556
Q ss_pred EEEecCCCC-CCC-cCCCCCeEEEecCCCCEEEEEEcCCCcCcc-e------------eeeeeee---------------
Q 001391 468 ICMDLLSNE-PKY-PCGIDDWVALGDGKGNMTIVRVVGDVHTPQ-L------------SFTFTWS--------------- 517 (1088)
Q Consensus 468 ~~l~~~~~~-~~~-s~~~~~~la~g~~dg~I~iw~~~~~~~~~~-~------------~~~~~~~--------------- 517 (1088)
..+.+.+.. +.+ ...+...+++++.||.|++|++.++..... . .....+.
T Consensus 346 ~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~ 425 (902)
T 2oaj_A 346 VNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQ 425 (902)
T ss_dssp EEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTB
T ss_pred EEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhccc
Confidence 665554321 100 012345788888999999999865532110 0 0000000
Q ss_pred ------ccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeC
Q 001391 518 ------AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE 591 (1088)
Q Consensus 518 ------~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spd 591 (1088)
..+..... ..+++|++++|++|+.|++|++||+..+..... ......+......+|...|++++|+||
T Consensus 426 ~~~~~l~G~~~~v~--sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~----~~~~~~l~~~~~~~h~~~V~svafspd 499 (902)
T 2oaj_A 426 NKDYLLKGGVRTKR--QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN----ASFEVNLSRTLNKAKELAVDKISFAAE 499 (902)
T ss_dssp CCCCSCCCSBCCCC--CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT----BCEEEEHHHHTTCSSSCCEEEEEEETT
T ss_pred CCCCcccCCcCCCC--cccccccCcEEEEecCCCcEEEEECCCccccCC----ceEEeechhhcCCCCCCceeEEEecCC
Confidence 00000011 125689999999999999999999986531100 000000000111378899999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCcccccc--------c------------------------ccccccccCcceeecccccccc
Q 001391 592 DEVLFCGDLRGNLVLFPLLRDLLND--------K------------------------SVALHVEVSPLNYFKGAHGIST 639 (1088)
Q Consensus 592 g~~LatGs~dg~I~Iw~~~~~~~~~--------~------------------------~~~~~~~l~~~~~~~g~hg~~~ 639 (1088)
+++||+|+.||+|+||++.++.... + .+.....+.+...+.+|. ..
T Consensus 500 g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~--~~ 577 (902)
T 2oaj_A 500 TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK--GK 577 (902)
T ss_dssp TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS--CS
T ss_pred CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC--Cc
Confidence 9999999999999999998652100 0 000001123455666666 48
Q ss_pred eeEEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceee--eeeeeEEEeecCCCc--cC-cccceEEEeeecc
Q 001391 640 VSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQV--KELSLIQSVSAENNS--ID-LASCNYAAGFAST 714 (1088)
Q Consensus 640 Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~ve~~~~~~~~--~~-~~~~~~~~Gf~~~ 714 (1088)
|++|+|+ +++ +|++++.||+|++||++....... ...... .....|..+.|.-.+ +| .++..++.|..++
T Consensus 578 V~svafS---pdG-~lAsgs~D~tv~lwd~~~~~~~~~-~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 578 TSAINNS---NIG-FVGIAYAAGSLMLIDRRGPAIIYM-ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp EEEEEEC---BTS-EEEEEETTSEEEEEETTTTEEEEE-EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred EEEEEec---CCc-EEEEEeCCCcEEEEECCCCeEEEE-eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 9999998 677 999999999999999855321100 001000 012335555554111 12 2346789999999
Q ss_pred cEEEEeC
Q 001391 715 DFIIWNL 721 (1088)
Q Consensus 715 ~~~iwn~ 721 (1088)
.+.+|+.
T Consensus 653 tv~~wd~ 659 (902)
T 2oaj_A 653 EVITYKI 659 (902)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9999997
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=389.31 Aligned_cols=462 Identities=14% Similarity=0.198 Sum_probs=343.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+.|++++|+ |+ +++||+|. +|.|+|||+.+++.+..+..|.+ .|.+++|+ |+++ .+++++
T Consensus 12 h~~~v~~i~~s--p~----~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s-------~~~~---~l~~~~ 74 (814)
T 3mkq_A 12 RSDRVKGIDFH--PT----EPWVLTTLYSGRVEIWNYETQVEVRSIQVTET-PVRAGKFI-------ARKN---WIIVGS 74 (814)
T ss_dssp ECSCEEEEEEC--SS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEE-------GGGT---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEeCCCEEEEEECCCCceEEEEecCCC-cEEEEEEe-------CCCC---EEEEEe
Confidence 67889999999 99 89999988 79999999999999999998766 79999999 7773 455555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceEEEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~~~~ 173 (1088)
.|+.|++|++.. .+.+..+.+|.+.|.+++|+| ++++|++++.|++|++||+.++ .....+
T Consensus 75 ~dg~i~vw~~~~---------------~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 136 (814)
T 3mkq_A 75 DDFRIRVFNYNT---------------GEKVVDFEAHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (814)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred CCCeEEEEECCC---------------CcEEEEEecCCCCEEEEEEeC---CCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence 699999999985 456777889999999999999 9999999999999999999987 444555
Q ss_pred ccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
..+. ..+.++++ +| ++..+++++.||.|++||+. .......+
T Consensus 137 ~~~~-~~v~~~~~---~p~~~~~l~~~~~dg~v~vwd~~---------------------------------~~~~~~~~ 179 (814)
T 3mkq_A 137 EGHE-HFVMCVAF---NPKDPSTFASGCLDRTVKVWSLG---------------------------------QSTPNFTL 179 (814)
T ss_dssp ECCS-SCEEEEEE---ETTEEEEEEEEETTSEEEEEETT---------------------------------CSSCSEEE
T ss_pred cCCC-CcEEEEEE---EcCCCCEEEEEeCCCeEEEEECC---------------------------------CCcceeEE
Confidence 4443 34666666 45 78899999999999999997 44445555
Q ss_pred eCC-CCCEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 253 VGH-EGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 253 ~gh-~~~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
..| ...|..++|+| ++.++++++.|+.|++||+.++ +.+. .+.+|...|.+++|+ +.+|++++.|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------SCVA--TLEGHMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT--------EEEE--EEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------cEEE--EEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 544 48999999999 9999999999999999999875 3343 678899999999998 5799999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCE-EEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL-LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~-l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
|.|++||. +++.+..+..|.. .|++++|+|++.. +++++.|+.+.+|++...
T Consensus 250 g~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 303 (814)
T 3mkq_A 250 GTLKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNGFTVLSLGND------------------------- 303 (814)
T ss_dssp SCEEEEETTTCSEEEEECCSSS-SEEEEEECTTCGGGEEEEEETTEEEEEECSCC-------------------------
T ss_pred CeEEEEECCCCcEEEEeecCCC-cEEEEEEccCCCceEEEEEeCCCEEEEEcCCC-------------------------
Confidence 99999999 7888999998887 6999999999873 244455777889987431
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCC----eEEEEEec------cCCcceeEEeeeecCCcceEEEecCCC
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG----YLYHTKLC------DMDSVNWNKILQVSEGMPIICMDLLSN 475 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g----~i~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~ 475 (1088)
...+.++|++.+++..... .++...+. ..................+.++++.+
T Consensus 304 ----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp- 366 (814)
T 3mkq_A 304 ----------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP- 366 (814)
T ss_dssp ----------------SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-
T ss_pred ----------------CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-
Confidence 1123345555555443211 11111111 00000000011122234455666644
Q ss_pred CCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
++.++++++ +|.+.+|++...... ....+. ..+++|+++++++++.+|.+++|+.-
T Consensus 367 -------dg~~la~~~-~~~~~i~~~~~~~~~------------~~~~i~--~~~~spdg~~la~~~~~g~v~l~~~~-- 422 (814)
T 3mkq_A 367 -------NGRFVTVVG-DGEYVIYTALAWRNK------------AFGKCQ--DFVWGPDSNSYALIDETGQIKYYKNF-- 422 (814)
T ss_dssp -------TSSEEEEEE-TTEEEEEETTTTEEE------------EEEECS--EEEECTTSSCEEEECTTCCEEEEETT--
T ss_pred -------CCCEEEEec-CCEEEEEECcccccc------------CCCceE--EEEEeCCCCeEEEEeCCCcEEEEECC--
Confidence 457888887 899999996432110 011122 25689999999999999999999632
Q ss_pred CCcccccCCcccceeeeeeeccccCceEEEEEeeeCC---CEEEEEcCCCcEEEEeCCcccccccccccccccCcceeec
Q 001391 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED---EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFK 632 (1088)
Q Consensus 556 ~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg---~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~ 632 (1088)
.+|...|.+++|+|++ .+|++++.|++|++||+.++. ....+.
T Consensus 423 ---------------------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-------------~~~~~~ 468 (814)
T 3mkq_A 423 ---------------------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-------------LVRRID 468 (814)
T ss_dssp ---------------------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-------------EEEEES
T ss_pred ---------------------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-------------EEEEEe
Confidence 1456678899999998 688899999999999998642 123333
Q ss_pred ccccccceeEEEEEeccCCceEEEEe------cCCCeEEEEE
Q 001391 633 GAHGISTVSTLSVAKLRSNQTEIRST------GGDGCICYLE 668 (1088)
Q Consensus 633 g~hg~~~Vtsv~~~~~~~~~~~l~t~------g~Dg~i~iw~ 668 (1088)
++. ..+.|+ +++.+|+++ +.|+.+.+|-
T Consensus 469 ~~~-----~~v~~s---~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 469 VNA-----KDVIWS---DNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp SCE-----EEEEEC---TTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred cCC-----CEEEEc---CCCCEEEEEEcCcccCCceEEEEEe
Confidence 222 278888 778899999 7777666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=363.39 Aligned_cols=438 Identities=13% Similarity=0.184 Sum_probs=324.6
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
+..+.+.+|.+ +|.+++|+ |+++ .+++++.++.|+|||+.. .+.+..+.+|...
T Consensus 4 ~~~~~~~~h~~-~v~~i~~s-------p~~~---~la~~~~~g~v~iwd~~~---------------~~~~~~~~~~~~~ 57 (814)
T 3mkq_A 4 DIKKTFSNRSD-RVKGIDFH-------PTEP---WVLTTLYSGRVEIWNYET---------------QVEVRSIQVTETP 57 (814)
T ss_dssp CCEEEEEEECS-CEEEEEEC-------SSSS---EEEEEETTSEEEEEETTT---------------TEEEEEEECCSSC
T ss_pred ccceeeecCCC-ceEEEEEC-------CCCC---EEEEEeCCCEEEEEECCC---------------CceEEEEecCCCc
Confidence 34567888776 79999999 7772 444445599999999874 4577788899999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
|.+++|+| ++++|++|+.||.|++||+.+++.+..+..+.. .+.++++ ++++.+|++++.||.|++||+.
T Consensus 58 v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~v~~~~~---s~~~~~l~~~~~dg~i~vw~~~--- 127 (814)
T 3mkq_A 58 VRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAV---HPTKPYVLSGSDDLTVKLWNWE--- 127 (814)
T ss_dssp EEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSEEEEEEGG---
T ss_pred EEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEEEEEE---eCCCCEEEEEcCCCEEEEEECC---
Confidence 99999999 999999999999999999999999888876654 4667776 6889999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccce-eeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
.. .....+.+|...|.+++|+| ++..+++++.|+.|++||+.++..
T Consensus 128 ------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-- 175 (814)
T 3mkq_A 128 ------------------------------NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-- 175 (814)
T ss_dssp ------------------------------GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--
T ss_pred ------------------------------CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--
Confidence 33 56777889999999999999 889999999999999999987532
Q ss_pred CCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
.. .....|...+.+++|+ +.++++++.||.|++||+ +++.+..+.+|.+ .|.+++|+|++++|++++
T Consensus 176 ------~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 176 ------NF-TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp ------SE-EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEE
T ss_pred ------ee-EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEe
Confidence 11 1233445889999996 579999999999999999 7888889999988 799999999999999999
Q ss_pred CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe--EEEEecCCeEEEE
Q 001391 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT--LYIATNHGYLYHT 445 (1088)
Q Consensus 368 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--ll~~t~~g~i~~~ 445 (1088)
.||.|++||+.... ....+..+...+.+++|+|++. +++++.++.+..+
T Consensus 248 ~dg~v~vwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (814)
T 3mkq_A 248 EDGTLKIWNSSTYK-----------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (814)
T ss_dssp TTSCEEEEETTTCS-----------------------------EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE
T ss_pred CCCeEEEEECCCCc-----------------------------EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEE
Confidence 99999999985321 0112233446799999999985 5777777777655
Q ss_pred EeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCC---EEE------EEEcCCCcCcceeeeeee
Q 001391 446 KLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN---MTI------VRVVGDVHTPQLSFTFTW 516 (1088)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~---I~i------w~~~~~~~~~~~~~~~~~ 516 (1088)
++..... . +.+. +++..+++++.+.. +.. |++..+.........
T Consensus 299 ~~~~~~~--------------~--~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 351 (814)
T 3mkq_A 299 SLGNDEP--------------T--LSLD--------PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE--- 351 (814)
T ss_dssp ECSCCSC--------------C--EEEC--------SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEE---
T ss_pred EcCCCCc--------------e--eEEC--------CCCCEEEECcccccceeeeeeecccccccccCccceeeeec---
Confidence 5432211 1 1111 12345555544432 111 111221111100000
Q ss_pred eccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEE
Q 001391 517 SAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596 (1088)
Q Consensus 517 ~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~La 596 (1088)
.......+. ..+++|+|++|++++ ++.+.+|++... ...+...|++++|+|++++||
T Consensus 352 ~~~~~~~~~--~~~~spdg~~la~~~-~~~~~i~~~~~~--------------------~~~~~~~i~~~~~spdg~~la 408 (814)
T 3mkq_A 352 LGSVDVFPQ--SLAHSPNGRFVTVVG-DGEYVIYTALAW--------------------RNKAFGKCQDFVWGPDSNSYA 408 (814)
T ss_dssp ECCCSSCCS--EEEECTTSSEEEEEE-TTEEEEEETTTT--------------------EEEEEEECSEEEECTTSSCEE
T ss_pred CCCCccCCc--eeEECCCCCEEEEec-CCEEEEEECccc--------------------cccCCCceEEEEEeCCCCeEE
Confidence 001111122 256899999999987 899999997532 112356788999999999999
Q ss_pred EEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCc---eEEEEecCCCeEEEEEeecCC
Q 001391 597 CGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEYDKDR 673 (1088)
Q Consensus 597 tGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~---~~l~t~g~Dg~i~iw~~~~~~ 673 (1088)
+++.+|.|++|+...+ |. ..|.++.|+ +++ ..|++++.||.|++|++..+.
T Consensus 409 ~~~~~g~v~l~~~~~~---------------------~~--~~v~~~~~s---~dg~~~~~l~~~~~d~~v~~~d~~~~~ 462 (814)
T 3mkq_A 409 LIDETGQIKYYKNFKE---------------------VT--SWSVPMHSA---IDRLFSGALLGVKSDGFVYFFDWDNGT 462 (814)
T ss_dssp EECTTCCEEEEETTEE---------------------CT--TCCCCCSSC---CCEEECSSSEEEEETTEEEEECTTTCC
T ss_pred EEeCCCcEEEEECCCC---------------------cc--ceEEcCCcC---ccceecceEEEEecCCEEEEEECCcCc
Confidence 9999999999974321 21 245666666 454 478999999999999997653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=342.42 Aligned_cols=279 Identities=19% Similarity=0.348 Sum_probs=248.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +.+|++|+ |++|+|||+.+++.+.++.+|.+ .|.+++|+ |+++ .+++++
T Consensus 107 h~~~V~~~~~~--p~----~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~-------~~~~---~l~sgs 169 (410)
T 1vyh_C 107 HRSPVTRVIFH--PV----FSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFD-------HSGK---LLASCS 169 (410)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred cCCcEEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-cEEEEEEc-------CCCC---EEEEEe
Confidence 67899999999 99 88999988 79999999999999999998777 79999999 7773 455556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|++|+|||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++..+..+.
T Consensus 170 ~D~~i~iwd~~~---------------~~~~~~~~~h~~~V~~v~~~p---~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 170 ADMTIKLWDFQG---------------FECIRTMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp TTSCCCEEETTS---------------SCEEECCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEeCCC---------------CceeEEEcCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 699999999874 457788899999999999999 99999999999999999999999998887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+... +..+.+ ++++.+|++|+.|+.|++||+. +......+.+
T Consensus 232 ~h~~~-v~~~~~---~~~g~~l~s~s~D~~v~vwd~~---------------------------------~~~~~~~~~~ 274 (410)
T 1vyh_C 232 GHREW-VRMVRP---NQDGTLIASCSNDQTVRVWVVA---------------------------------TKECKAELRE 274 (410)
T ss_dssp CCSSC-EEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCcc-EEEEEE---CCCCCEEEEEcCCCeEEEEECC---------------------------------CCceeeEecC
Confidence 66543 445554 6889999999999999999998 6677788899
Q ss_pred CCCCEEEEEEcCC--------------------CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE
Q 001391 255 HEGSIFRIEWSSC--------------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (1088)
Q Consensus 255 h~~~V~~v~~sp~--------------------g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v 314 (1088)
|...|.+++|+|+ +.++++++.|++|++||+.++ ..+. .+.+|...|.++
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--------~~~~--~~~~h~~~v~~v 344 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--------MCLM--TLVGHDNWVRGV 344 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--------EEEE--EEECCSSCEEEE
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC--------ceEE--EEECCCCcEEEE
Confidence 9999999999996 678999999999999999885 3443 778999999999
Q ss_pred EEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 315 CLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 315 ~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+|+ +.+|++|+.||+|++||+ .++++..+.+|.. .|++++|+|++.+|++|+.||+|++|++
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 998 679999999999999999 7888999999998 7999999999999999999999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=321.34 Aligned_cols=283 Identities=17% Similarity=0.286 Sum_probs=242.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCee--EEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~--~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|.+|+|+ |+....+.+|++|+ |++|+|||+.+++. ...+.+|.. .|.+++|+ +++. .+++
T Consensus 31 H~~~V~~v~~~--~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~-~v~~~~~~-------~~~~---~l~s 97 (321)
T 3ow8_A 31 HDDAIWSVAWG--TNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-GVVSVDIS-------HTLP---IAAS 97 (321)
T ss_dssp SSSCEEEEEEC---------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC-------SSSS---EEEE
T ss_pred CCCcEEEEEEe--cCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC-CEEEEEEC-------CCCC---EEEE
Confidence 67999999999 75222357899988 89999999988754 345677666 79999999 6662 4444
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
++.|++|++||+.. .+.+..+..|...+.+++|+| ++++|++|+.|+.|++||+.+++....
T Consensus 98 ~s~D~~i~lWd~~~---------------~~~~~~~~~~~~~~~~~~~sp---dg~~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 98 SSLDAHIRLWDLEN---------------GKQIKSIDAGPVDAWTLAFSP---DSQYLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EETTSEEEEEETTT---------------TEEEEEEECCTTCCCCEEECT---TSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred EeCCCcEEEEECCC---------------CCEEEEEeCCCccEEEEEECC---CCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence 45599999999985 456777888999999999999 999999999999999999999998887
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+..+.. .+.++++ +|++.+|++|+.||.|++||+. +++.+..+
T Consensus 160 ~~~~~~-~v~~~~~---spdg~~lasg~~dg~i~iwd~~---------------------------------~~~~~~~~ 202 (321)
T 3ow8_A 160 LDTRGK-FILSIAY---SPDGKYLASGAIDGIINIFDIA---------------------------------TGKLLHTL 202 (321)
T ss_dssp EECSSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TTEEEEEE
T ss_pred ecCCCc-eEEEEEE---CCCCCEEEEEcCCCeEEEEECC---------------------------------CCcEEEEE
Confidence 765543 3556666 6899999999999999999998 67788899
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i 330 (1088)
.+|...|.+++|+|++++|++++.|++|++||+.+. ..+. .+.+|...|.+++|+ +.+|++++.|++|
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--------~~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--------NLAG--TLSGHASWVLNVAFCPDDTHFVSSSSDKSV 272 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--------CEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--------ceeE--EEcCCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999875 3333 788999999999998 6799999999999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
++||+ +++++..+.+|.+ .|++++|+|++.+|++++.||.|++||.
T Consensus 273 ~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999 7889999999988 7999999999999999999999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=321.76 Aligned_cols=283 Identities=16% Similarity=0.258 Sum_probs=243.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|.+++|+ |+ +++|++|+ |++|+|||+.+++.+..+..+.. .|.+++|+ |+++ .+++++
T Consensus 54 H~~~v~~~~~s--~d----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s-------~~~~---~l~s~~ 116 (340)
T 1got_B 54 HLAKIYAMHWG--TD----SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYA-------PSGN---YVACGG 116 (340)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEEC-------CCCC---EEEEEe
Confidence 67899999999 99 89999988 79999999999999999988666 79999999 7772 444445
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.|++|++.... ...+....+.+|.+.|.++.|++ ++. +++++.|++|++||+.+++.+..+.
T Consensus 117 ~d~~v~iw~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~---~~~-l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 117 LDNICSIYNLKTRE-----------GNVRVSRELAGHTGYLSCCRFLD---DNQ-IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCEEEEEETTTCS-----------BSCEEEEEEECCSSCEEEEEEEE---TTE-EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECccCC-----------CcceeEEEecCCCccEEEEEECC---CCc-EEEEECCCcEEEEECCCCcEEEEEc
Confidence 59999999997532 01356677889999999999998 765 8899999999999999999998887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+.. .+.++++ +|++.++++|+.|+.|++||++ ++..+..+.+
T Consensus 182 ~h~~-~v~~~~~---~~~~~~l~sg~~d~~v~~wd~~---------------------------------~~~~~~~~~~ 224 (340)
T 1got_B 182 GHTG-DVMSLSL---APDTRLFVSGACDASAKLWDVR---------------------------------EGMCRQTFTG 224 (340)
T ss_dssp CCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCSEEEEECC
T ss_pred CCCC-ceEEEEE---CCCCCEEEEEeCCCcEEEEECC---------------------------------CCeeEEEEcC
Confidence 6654 3667776 6788999999999999999998 6777888999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|...|.+++|+|++++|++++.|++|++||+...+ .+..+....+...|.+++|+ +.+|++|+.|+.|++
T Consensus 225 h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--------EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 99999999999999999999999999999998853 22211222344579999998 689999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
||. .++.+..+.+|.+ +|++++|+|++.+|++|+.||.|++||
T Consensus 297 wd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 297 WDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999 7888899999998 799999999999999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=320.70 Aligned_cols=293 Identities=16% Similarity=0.172 Sum_probs=228.3
Q ss_pred ceEEecCCCc---eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC------------CeeEEEEeeeCCcceEE
Q 001391 6 LSEWRLDVGQ---YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA------------GTLIRPFQVFHGIRLHG 70 (1088)
Q Consensus 6 i~iWdl~~g~---~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t------------g~~~~~~~~~~~~~V~~ 70 (1088)
.+.|++.... +...|.+++|+ || |++|+++++.++++||... +.....+. ++. .|.+
T Consensus 16 ~r~w~~~~~~~~~~~~~v~~~~fs--~d----G~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~ 87 (344)
T 4gqb_B 16 AREWNLPPNAPACMERQLEAARYR--SD----GALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ-TEA-GVAD 87 (344)
T ss_dssp -------CCSCSSCCSEEEEEEEC--TT----SCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEE-ESS-CEEE
T ss_pred ccccCCCCCCcccccCCEEEEEEC--CC----CCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeec-cCC-CEEE
Confidence 5788876654 55779999999 99 8999999998888887321 11112222 233 6999
Q ss_pred EEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE
Q 001391 71 ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1088)
Q Consensus 71 i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l 150 (1088)
++|+ |++ .+++++.|++|+|||++.... .......+.+|.+.|++++|+| ++++|
T Consensus 88 ~~~s-------~d~----~l~~~s~dg~v~lWd~~~~~~-----------~~~~~~~~~~H~~~V~~v~~sp---dg~~l 142 (344)
T 4gqb_B 88 LTWV-------GER----GILVASDSGAVELWELDENET-----------LIVSKFCKYEHDDIVSTVSVLS---SGTQA 142 (344)
T ss_dssp EEEE-------TTT----EEEEEETTSEEEEEEECTTSS-----------CEEEEEEEECCSSCEEEEEECT---TSSEE
T ss_pred EEEe-------CCC----eEEEEECCCEEEEEeccCCCc-----------eeEeeccccCCCCCEEEEEECC---CCCEE
Confidence 9999 775 777788899999999986430 1123344568999999999999 99999
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
++|+.|++|++||+.+++.+..+.+|... ++++.+ ++++ .++++|+.|++|++||++
T Consensus 143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-V~~~~~---~~~~~~~l~s~s~D~~v~iwd~~------------------ 200 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQ-VTCVAA---SPHKDSVFLSCSEDNRILLWDTR------------------ 200 (344)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEE---CSSCTTEEEEEETTSCEEEEETT------------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCcCCc-eEEEEe---cCCCCCceeeecccccccccccc------------------
Confidence 99999999999999999999998877653 566666 4555 578999999999999998
Q ss_pred CCCCCceeEecccccceeeeEEE--eCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
.++....+ ..|...+.+++|+|+ ++++++++.|++|++||+++++ .+. .+.+
T Consensus 201 ---------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--------~~~--~~~~ 255 (344)
T 4gqb_B 201 ---------------CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--------CVL--SSAV 255 (344)
T ss_dssp ---------------SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------CCE--EEEC
T ss_pred ---------------ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--------EEE--EEcC
Confidence 44444444 356678999999995 5688999999999999998853 343 7889
Q ss_pred cCcceEEEEEC--C-CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCC
Q 001391 307 HNARVWDCCLT--D-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 307 h~~~I~~v~~~--~-~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~ 379 (1088)
|...|++++|+ + .+|++|+.|++|++||+....+..+.+|.+ .|++++|+|++. +|+++|.||+|++|++..
T Consensus 256 h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~-~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRD-FVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCC-CEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 99999999998 3 579999999999999995555667889998 799999999986 678999999999999964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.99 Aligned_cols=287 Identities=13% Similarity=0.239 Sum_probs=243.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|.+++|+ |+ +++|++|+ |++|+|||..+++..+.+..+.. .|.+++|+ |++ ..++++
T Consensus 63 H~~~V~~~~~s--~d----~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-~v~~~~~s-------p~g----~~lasg 124 (354)
T 2pbi_B 63 HGNKVLCMDWC--KD----KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAYA-------PSG----CAIACG 124 (354)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCEEEEC-------TTS----SEEEEE
T ss_pred CCCeEEEEEEC--CC----CCEEEEEeCCCeEEEEECCCCCcceEEecCCC-CEEEEEEC-------CCC----CEEEEe
Confidence 67899999999 99 89999988 79999999999999998887665 79999999 787 566666
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+ |+.+++|++....... .......+.+|.+.|.+++|+| ++..|++|+.|++|++||+++++.+..+
T Consensus 125 ~~d~~i~v~~~~~~~~~~---------~~~~~~~~~~h~~~v~~~~~~~---~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNEN---------MAAKKKSVAMHTNYLSACSFTN---SDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp STTSEEEEEECCCCTTCC---------SGGGCEEEEECSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eCCCCEEEEEEecccccc---------ccccceeeeccCCcEEEEEEeC---CCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 5 9999999987543111 1234556778999999999999 9999999999999999999999999888
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
..+... +.++.+. .++++.+|++|+.||.|++||++ +++.+..+.
T Consensus 193 ~~h~~~-v~~~~~~-~~~~g~~l~sgs~Dg~v~~wd~~---------------------------------~~~~~~~~~ 237 (354)
T 2pbi_B 193 HGHGAD-VLCLDLA-PSETGNTFVSGGCDKKAMVWDMR---------------------------------SGQCVQAFE 237 (354)
T ss_dssp ECCSSC-EEEEEEC-CCSSCCEEEEEETTSCEEEEETT---------------------------------TCCEEEEEC
T ss_pred cCCCCC-eEEEEEE-eCCCCCEEEEEeCCCeEEEEECC---------------------------------CCcEEEEec
Confidence 876543 4455543 23467899999999999999998 677788899
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~ 331 (1088)
+|...|.+++|+|++.+|++++.|++|++||+...+. +..+....+...+.+++|+ +.+|++|+.|++|+
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--------~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--------VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--------EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 9999999999999999999999999999999987532 2211222334578999998 68999999999999
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+||+ +++.+..+.+|.+ .|++++|+|++++|++|+.||+|++|+
T Consensus 310 vwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 310 VWDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999 8888999999998 799999999999999999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=308.04 Aligned_cols=279 Identities=18% Similarity=0.303 Sum_probs=234.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ |++|+|||+.+++.+..+..+.. .|.+++|+ |+++ .+++++
T Consensus 12 h~~~V~~~~fs--p~----~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~-------~~~~---~l~s~s 74 (304)
T 2ynn_A 12 RSDRVKGIDFH--PT----EPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFI-------ARKN---WIIVGS 74 (304)
T ss_dssp ECSCEEEEEEC--SS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEE-------GGGT---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEe-------CCCC---EEEEEC
Confidence 67889999999 99 89999988 79999999999999999998766 79999999 6763 555566
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE-EEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~-~~~ 173 (1088)
.|++|++||+.. .+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++... ..+
T Consensus 75 ~d~~i~vwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 75 DDFRIRVFNYNT---------------GEKVVDFEAHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEECCC---------------CcEEEEEeCCCCcEEEEEEcC---CCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 699999999985 456778899999999999999 9999999999999999999987554 445
Q ss_pred ccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-
Q 001391 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR- 251 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~- 251 (1088)
..+. ..+.++++ +| ++..|++|+.|++|++||+. .......
T Consensus 137 ~~h~-~~v~~v~~---~p~~~~~l~sgs~D~~v~iwd~~---------------------------------~~~~~~~~ 179 (304)
T 2ynn_A 137 EGHE-HFVMCVAF---NPKDPSTFASGCLDRTVKVWSLG---------------------------------QSTPNFTL 179 (304)
T ss_dssp CCCC-SCEEEEEE---CTTCTTEEEEEETTSEEEEEETT---------------------------------CSSCSEEE
T ss_pred cccC-CcEEEEEE---CCCCCCEEEEEeCCCeEEEEECC---------------------------------CCCcccee
Confidence 4444 45667776 45 57899999999999999997 3333333
Q ss_pred EeCCCCCEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 252 LVGHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
..+|...|..+.|+| ++.+|++++.|++|++||+.++ +.+. .+.+|...|.+++|+ +.+|++|+.|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~D 249 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------SCVA--TLEGHMSNVSFAVFHPTLPIIISGSED 249 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT--------EEEE--EEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC--------ccce--eeCCCCCCEEEEEECCCCCEEEEEcCC
Confidence 346778899999987 7789999999999999999885 4444 788999999999998 5789999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEEcC
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~--~l~tg~~Dg~I~iwd~~ 378 (1088)
|+|++||. +++.+..+..|.. .+++++++|++. ++++|+.|| +.+|++.
T Consensus 250 g~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 250 GTLKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp SCEEEEETTTCCEEEEECCSSS-SEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred CeEEEEECCCCceeeeccCCCc-cEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 99999999 7889999999887 699999999875 577776555 7788774
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=327.33 Aligned_cols=295 Identities=17% Similarity=0.285 Sum_probs=239.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ |++|+|||+.+++.+..+..|.. .|.+++|+ |++ .+++++
T Consensus 65 H~~~V~~~~~s--p~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-~v~~~~~s-------~~g----~~las~ 126 (380)
T 3iz6_a 65 HSGKVYSLDWT--PE----KNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-WVMECAFA-------PNG----QSVACG 126 (380)
T ss_dssp CSSCEEEEEEC--TT----SSCEEEEETTSEEEEEETTTTEEEEEEECCCT-TCCCCEEC-------TTS----SEEEEC
T ss_pred cccEEEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCccceEEecCCC-CEEEEEEC-------CCC----CEEEEe
Confidence 67899999999 99 88999988 79999999999999999998776 69999999 787 556555
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
+ |+.+++|++........ .......+.+|.+.|.++.|+| + +..|++|+.|++|++||+.+++.+..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~--------~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDG--------NMPVSRVLTGHKGYASSCQYVP---DQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CSSSCCEEEECCCCSSCCC--------SSTTCCBCCCCSSCCCCCBCCS---SSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred eCCCcEEEEECCCCccccC--------CccceeeccCCCcceEEEEEec---CCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 4 99999999975321111 1345567889999999999999 5 45799999999999999999998877
Q ss_pred ec----cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 173 VH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 173 ~~----~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
+. ......+.++.+. ++++.++++|+.|+.|++||++ .....
T Consensus 196 ~~~~~~~~h~~~v~~~~~~--~~~~~~l~sgs~D~~v~~wd~~--------------------------------~~~~~ 241 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSIN--SLNANMFISGSCDTTVRLWDLR--------------------------------ITSRA 241 (380)
T ss_dssp ECCCSSSSCCSCEEEEEEC--SSSCCEEEEEETTSCEEEEETT--------------------------------TTCCC
T ss_pred eecccCCCCccCeEEEEee--cCCCCEEEEEECCCeEEEEECC--------------------------------CCCcc
Confidence 63 1223345566652 3478899999999999999987 13456
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccCcceEEEEEC--CCEEEEE
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+..+.+|.+.|.+++|+|++++|++++.|++|++||+.++.. ...+.. .....+...|.+++|+ +.+|++|
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-----LQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE-----EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE-----EEEecccccccccccCceEEEEECCCCCEEEEE
Confidence 778899999999999999999999999999999999998643 111110 0011223358999998 7899999
Q ss_pred eCCCcEEEEcC-CCceeEEE----cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 325 GEDCTCRVWGS-DGKQLKMI----KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~----~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+.||.|++||. .++.+..+ .+|.+ .|++++|+|++.+|++|+.||+|++|++.+
T Consensus 317 ~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 99999999999 67777776 67887 699999999999999999999999999964
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=319.26 Aligned_cols=296 Identities=14% Similarity=0.156 Sum_probs=223.6
Q ss_pred CCCceEEecCCCc---eeeeeEEEEEeccCCCCCCCCEEEEEe-------CCeEEEEECCCCeeE----EEEeeeCCcce
Q 001391 3 KKDLSEWRLDVGQ---YLGEISALCFVHLPSHLSSLPFLLAGS-------GSQVLLYDLEAGTLI----RPFQVFHGIRL 68 (1088)
Q Consensus 3 d~~i~iWdl~~g~---~~~~V~~v~fs~~pd~~~~~~~laag~-------d~~I~vwd~~tg~~~----~~~~~~~~~~V 68 (1088)
+.....|++.... |.+.|.+|+|| || |++||+|+ |+.|++|+..++... .....|+. .|
T Consensus 25 ~~~~~~w~~p~~~p~~H~~~V~~v~fS--pD----G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~-~V 97 (357)
T 4g56_B 25 SSKGSAWGRPVTAPACMEVQIGAVRYR--RD----GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEA-GV 97 (357)
T ss_dssp ---------------CCCSEEEEEEEC--SS----SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSS-CE
T ss_pred CccccccCCCCCCcccccCCEEEEEEC--CC----CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCC-CE
Confidence 4557888876554 77899999999 99 99999987 467999998877543 23334444 69
Q ss_pred EEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~ 148 (1088)
.+++|+ |++ .+++++.|++|+|||+..... .........+|.+.|++++|+| +++
T Consensus 98 ~~~~~s-------~d~----~~l~~s~dg~v~lWd~~~~~~-----------~~~~~~~~~~h~~~V~~v~~sp---dg~ 152 (357)
T 4g56_B 98 TDVAWV-------SEK----GILVASDSGAVELWEILEKES-----------LLVNKFAKYEHDDIVKTLSVFS---DGT 152 (357)
T ss_dssp EEEEEE-------TTT----EEEEEETTSCEEEC-------------------CCCCEEECCCSSCEEEEEECS---SSS
T ss_pred EEEEEc-------CCC----CEEEEECCCEEEEeeccccce-----------eEEEeeccCCCCCCEEEEEECC---CCC
Confidence 999999 776 788888899999999986430 0112234458999999999999 999
Q ss_pred EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 149 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
+|++|+.|++|++||+.+++.+..+..+.. .+.++++ ++++ .++++++.||.|++||++
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~---s~~~~~~~~s~~~dg~v~~wd~~---------------- 212 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-EVNCVAA---CPGKDTIFLSCGEDGRILLWDTR---------------- 212 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE---CTTCSSCEEEEETTSCEEECCTT----------------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEE---ccCCCceeeeeccCCceEEEECC----------------
Confidence 999999999999999999999998877654 4667766 3444 578999999999999998
Q ss_pred CCCCCCCceeEecccccceeeeE--EEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLF--RLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
+++... .+..|...+.+++|+|++ .+|++++.|+.|++||+.+++ .+. .+
T Consensus 213 -----------------~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--------~~~--~~ 265 (357)
T 4g56_B 213 -----------------KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--------SAQ--TS 265 (357)
T ss_dssp -----------------SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--------GCE--EE
T ss_pred -----------------CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--------EeE--EE
Confidence 222222 234677889999999975 688999999999999998853 333 77
Q ss_pred eccCcceEEEEEC--C-CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcCC
Q 001391 305 YGHNARVWDCCLT--D-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 305 ~~h~~~I~~v~~~--~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+|...|++++|+ + .+|++|+.|++|+|||+ .++.+ ...+|.+ .|++++|+| ++.+|++++.||+|++|++..
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~-~~~~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF-RDLSHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE-EECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe-EECCCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 8999999999998 2 57999999999999999 45554 4457888 799999998 789999999999999999943
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=317.58 Aligned_cols=288 Identities=18% Similarity=0.364 Sum_probs=236.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCC-----------------cceEEEEeccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG-----------------IRLHGISCNFINC 78 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~-----------------~~V~~i~~s~~~~ 78 (1088)
|.+.|.+++|+ || +++||+|.++.++||++.+++.+..+..+.. ..|.+++|+
T Consensus 63 h~~~V~~v~fs--pd----g~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---- 132 (393)
T 1erj_A 63 HTSVVCCVKFS--ND----GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS---- 132 (393)
T ss_dssp CSSCCCEEEEC--TT----SSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC----
T ss_pred CCCEEEEEEEC--CC----CCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC----
Confidence 67889999999 99 8999999999999999999999888765432 138999999
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCc
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS 158 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~ 158 (1088)
|+++ .+++++.|++|+|||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++
T Consensus 133 ---~dg~---~l~s~~~d~~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~s~d~~ 188 (393)
T 1erj_A 133 ---PDGK---FLATGAEDRLIRIWDIEN---------------RKIVMILQGHEQDIYSLDYFP---SGDKLVSGSGDRT 188 (393)
T ss_dssp ---TTSS---EEEEEETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEECT---TSSEEEEEETTSE
T ss_pred ---CCCC---EEEEEcCCCeEEEEECCC---------------CcEEEEEccCCCCEEEEEEcC---CCCEEEEecCCCc
Confidence 7873 444555699999999874 456778899999999999999 9999999999999
Q ss_pred EEEEEcCCCceEEEeccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 159 V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
|++||+.+++....+..+.. +.++++ ++ ++.+|++|+.||.|++||+.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~--v~~~~~---~~~~~~~l~~~s~d~~v~iwd~~-------------------------- 237 (393)
T 1erj_A 189 VRIWDLRTGQCSLTLSIEDG--VTTVAV---SPGDGKYIAAGSLDRAVRVWDSE-------------------------- 237 (393)
T ss_dssp EEEEETTTTEEEEEEECSSC--EEEEEE---CSTTCCEEEEEETTSCEEEEETT--------------------------
T ss_pred EEEEECCCCeeEEEEEcCCC--cEEEEE---ECCCCCEEEEEcCCCcEEEEECC--------------------------
Confidence 99999999988777654432 445555 34 78999999999999999998
Q ss_pred EecccccceeeeEEE-------eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC----CCceeeeceeeec
Q 001391 238 KLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS----DSIEEVGSSVLYG 306 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~-------~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~----~~~~~i~~~~~~~ 306 (1088)
++..+..+ .+|...|.+++|+|++++|++++.|++|++||+.+...... ...... ..+.+
T Consensus 238 -------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~--~~~~~ 308 (393)
T 1erj_A 238 -------TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE--VTYIG 308 (393)
T ss_dssp -------TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE--EEEEC
T ss_pred -------CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcce--EEEec
Confidence 33333333 68999999999999999999999999999999986432100 001122 26789
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcC------CCCEEEEEeCCCCEEEEEc
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS------LSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~------dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|...|.+++|+ +.+|++|+.|++|++||. +++++..+.+|.+ .|.+++|++ ++++|++|+.||+|++|++
T Consensus 309 h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99999999998 689999999999999999 7889999999998 799999976 6789999999999999998
Q ss_pred C
Q 001391 378 Q 378 (1088)
Q Consensus 378 ~ 378 (1088)
.
T Consensus 388 ~ 388 (393)
T 1erj_A 388 K 388 (393)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=299.14 Aligned_cols=288 Identities=15% Similarity=0.238 Sum_probs=235.0
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
+...++.+|.+ .|.+++|+ |+++ .+++++.|++|+|||++. .+.+..+.+|...
T Consensus 4 ~~~~~~~~h~~-~V~~~~fs-------p~~~---~l~s~~~dg~v~lWd~~~---------------~~~~~~~~~~~~~ 57 (304)
T 2ynn_A 4 DIKKTFSNRSD-RVKGIDFH-------PTEP---WVLTTLYSGRVELWNYET---------------QVEVRSIQVTETP 57 (304)
T ss_dssp CCEEEEEEECS-CEEEEEEC-------SSSS---EEEEEETTSEEEEEETTT---------------TEEEEEEECCSSC
T ss_pred eeEEeecCCCC-ceEEEEEC-------CCCC---EEEEEcCCCcEEEEECCC---------------CceeEEeeccCCc
Confidence 34567888777 79999999 7773 555556699999999975 4567788899999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
|.+++|+| ++++|++|+.|++|++||+.+++.+..+..|.. .+.++++ +|++.+|++|+.|++|++||++
T Consensus 58 v~~~~~~~---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~---~~~~~~l~sgs~D~~v~lWd~~--- 127 (304)
T 2ynn_A 58 VRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAV---HPTKPYVLSGSDDLTVKLWNWE--- 127 (304)
T ss_dssp EEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEEGG---
T ss_pred EEEEEEeC---CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC-cEEEEEE---cCCCCEEEEECCCCeEEEEECC---
Confidence 99999999 999999999999999999999999988887654 3667776 6788999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccce-eeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
.. .....+.+|...|.+++|+| ++..|++++.|++|++||+.....
T Consensus 128 ------------------------------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-- 175 (304)
T 2ynn_A 128 ------------------------------NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-- 175 (304)
T ss_dssp ------------------------------GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--
T ss_pred ------------------------------CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--
Confidence 33 45667889999999999999 678999999999999999977532
Q ss_pred CCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
... ...+|...+..+.|. +.+|++|+.|++|++||+ +++++..+.+|.. .|.+++|+|++.+|++|+
T Consensus 176 -----~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 176 -----NFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp -----SEE--EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEE
T ss_pred -----cce--eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEc
Confidence 111 334677789999986 368999999999999999 7888999999998 799999999999999999
Q ss_pred CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe--EEEEecCCeEEEE
Q 001391 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT--LYIATNHGYLYHT 445 (1088)
Q Consensus 368 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--ll~~t~~g~i~~~ 445 (1088)
.||+|++||+.+.. ....+..+.+.+.+++++|++. +++++.++.+..+
T Consensus 248 ~Dg~i~iWd~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 248 EDGTLKIWNSSTYK-----------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp TTSCEEEEETTTCC-----------------------------EEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred CCCeEEEEECCCCc-----------------------------eeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 99999999985421 1122334446789999998773 4555555555544
Q ss_pred Ee
Q 001391 446 KL 447 (1088)
Q Consensus 446 ~~ 447 (1088)
.+
T Consensus 299 ~~ 300 (304)
T 2ynn_A 299 SL 300 (304)
T ss_dssp EC
T ss_pred Ee
Confidence 33
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=305.89 Aligned_cols=295 Identities=17% Similarity=0.253 Sum_probs=231.0
Q ss_pred CceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEE--E-eeeCCcceEEEEecccccccCCCccceee
Q 001391 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP--F-QVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 14 g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~--~-~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
++..+.|.+++|+ |+ +++||+|+ |++|+|||+.+++.+.. + .+|.. .|.+++|+ |+++ .
T Consensus 13 ~h~~~~v~~l~~s--p~----g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~s-------p~g~---~ 75 (345)
T 3fm0_A 13 AHPDSRCWFLAWN--PA----GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWS-------PCGN---Y 75 (345)
T ss_dssp CSTTSCEEEEEEC--TT----SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS-CEEEEEEC-------TTSS---E
T ss_pred CCCCCcEEEEEEC--CC----CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC-cEEEEEEC-------CCCC---E
Confidence 4443489999999 99 89999988 79999999998865433 2 34444 79999999 7773 4
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|++++||++.... .+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++..
T Consensus 76 l~s~s~D~~v~iw~~~~~~-------------~~~~~~~~~h~~~v~~v~~sp---~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 76 LASASFDATTCIWKKNQDD-------------FECVTTLEGHENEVKSVAWAP---SGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp EEEEETTSCEEEEEECCC--------------EEEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEEECTTSC
T ss_pred EEEEECCCcEEEEEccCCC-------------eEEEEEccCCCCCceEEEEeC---CCCEEEEEECCCeEEEEECCCCCC
Confidence 4444569999999988543 467788999999999999999 999999999999999999987643
Q ss_pred ---EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 170 ---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 170 ---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
+..+..+.. .+.++++ +|++.+|++|+.|+.|++||..+. ..
T Consensus 140 ~~~~~~~~~h~~-~v~~~~~---~p~~~~l~s~s~d~~i~~w~~~~~-------------------------------~~ 184 (345)
T 3fm0_A 140 YECVSVLNSHTQ-DVKHVVW---HPSQELLASASYDDTVKLYREEED-------------------------------DW 184 (345)
T ss_dssp EEEEEEECCCCS-CEEEEEE---CSSSSCEEEEETTSCEEEEEEETT-------------------------------EE
T ss_pred eEEEEEecCcCC-CeEEEEE---CCCCCEEEEEeCCCcEEEEEecCC-------------------------------CE
Confidence 344444433 4566666 678999999999999999998710 22
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC-------CCceeeeceeeec-cCcceEEEEEC-
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-------DSIEEVGSSVLYG-HNARVWDCCLT- 317 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~-------~~~~~i~~~~~~~-h~~~I~~v~~~- 317 (1088)
.....+.+|...|.+++|+|++++|++++.|++|++|+......... ....++. .+.+ |...|++++|+
T Consensus 185 ~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~v~~~~ 262 (345)
T 3fm0_A 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC--TLSGFHSRTIYDIAWCQ 262 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE--EECSSCSSCEEEEEECT
T ss_pred EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE--EecCCCCCcEEEEEEec
Confidence 35677899999999999999999999999999999999754321100 0012222 3444 88999999998
Q ss_pred -CCEEEEEeCCCcEEEEcCCCc-----e-----eEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCC
Q 001391 318 -DSFIITAGEDCTCRVWGSDGK-----Q-----LKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~~~~-----~-----~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..|++++.|++|++|+.... + .....+|.. .|++++|+|++ .+|++|+.||+|++|++..
T Consensus 263 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ-DVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS-CEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC-cEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 689999999999999997321 1 122357877 79999999997 4999999999999999954
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=304.98 Aligned_cols=290 Identities=16% Similarity=0.180 Sum_probs=236.2
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
....++|.+ .|.+++|+|.. .+++ ..+++++.|++|+||++.... ......+.+|...|.
T Consensus 25 ~~~~~~H~~-~V~~v~~~~~~---~~~~---~~l~tgs~D~~v~vW~~~~~~-------------~~~~~~l~gh~~~v~ 84 (321)
T 3ow8_A 25 FKQEQAHDD-AIWSVAWGTNK---KENS---ETVVTGSLDDLVKVWKWRDER-------------LDLQWSLEGHQLGVV 84 (321)
T ss_dssp EEETTSSSS-CEEEEEEC-------------CEEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSSCEE
T ss_pred eeecccCCC-cEEEEEEecCC---CCCC---CEEEEEcCCCCEEEEECCCCC-------------eeeeeeeccCCCCEE
Confidence 344456666 79999999421 0123 134444559999999998543 455667899999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+++|+| ++.++++++.|++|++||+.+++.+..+..+... ++++++ +|++.+|++|+.||.|++|++.
T Consensus 85 ~~~~~~---~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-~~~~~~---spdg~~l~~g~~dg~v~i~~~~----- 152 (321)
T 3ow8_A 85 SVDISH---TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-AWTLAF---SPDSQYLATGTHVGKVNIFGVE----- 152 (321)
T ss_dssp EEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-CCCEEE---CTTSSEEEEECTTSEEEEEETT-----
T ss_pred EEEECC---CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-EEEEEE---CCCCCEEEEEcCCCcEEEEEcC-----
Confidence 999999 9999999999999999999999988887655432 344554 6899999999999999999998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
.+.....+..|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 153 ----------------------------~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-------- 196 (321)
T 3ow8_A 153 ----------------------------SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-------- 196 (321)
T ss_dssp ----------------------------TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------
T ss_pred ----------------------------CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC--------
Confidence 66677788899999999999999999999999999999999885
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~ 373 (1088)
+.+. .+.+|...|.+++|+ +.+|++|+.|++|++||+ .++.+..+.+|.. .|.+++|+|++.+|++++.|++|+
T Consensus 197 ~~~~--~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 197 KLLH--TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp EEEE--EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEE--EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEE
Confidence 3443 778999999999998 579999999999999999 7788889999998 699999999999999999999999
Q ss_pred EEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEecCCeEEEEE
Q 001391 374 VHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTK 446 (1088)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t~~g~i~~~~ 446 (1088)
+||+.... .+..+..|...|.+++|+|++. ++.++.+|.+..|+
T Consensus 274 iwd~~~~~-----------------------------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 274 VWDVGTRT-----------------------------CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEETTTTE-----------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEeCCCCE-----------------------------EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 99995321 1223345667899999999885 55556778888554
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=303.49 Aligned_cols=297 Identities=19% Similarity=0.250 Sum_probs=220.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--eeEEEE-eeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPF-QVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~~~~~~-~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|.++|.+++|+ |+ +|++|+ |++|+|||+.++ +.+..+ ...+...|.+++|+ |+++ .++
T Consensus 13 h~~~v~~~~~s--~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-------p~~~---~la 74 (330)
T 2hes_X 13 YKEKIWSFDFS--QG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-------PHTS---LLA 74 (330)
T ss_dssp CSSCEEEEEEE--TT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-------TTSS---EEE
T ss_pred CCCceeeeccC--CC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-------CCCC---EEE
Confidence 66899999999 64 888877 799999999875 455566 33134479999999 7772 444
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC----
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS---- 167 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~---- 167 (1088)
+++.|++|+||++..... .....+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+...
T Consensus 75 s~s~D~~v~iw~~~~~~~--------~~~~~~~~~~~~~h~~~V~~v~~sp---~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESAD--------RTFEMDLLAIIEGHENEVKGVAWSN---DGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEETTSCEEEEEC---------------CCCEEEEEEC----CEEEEEECT---TSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEeCCCcEEEEEcccCcC--------ccccceeEEEEcCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 455699999999864210 0012456778899999999999999 9999999999999999999432
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
+.+..+..+.. .+.++.+ +|++.+|++|+.|++|++||..+ ....
T Consensus 144 ~~~~~~~~h~~-~v~~v~~---~p~~~~l~s~s~D~~i~iW~~~~-------------------------------~~~~ 188 (330)
T 2hes_X 144 ECISVLQEHSQ-DVKHVIW---HPSEALLASSSYDDTVRIWKDYD-------------------------------DDWE 188 (330)
T ss_dssp EEEEEECCCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEEEET-------------------------------TEEE
T ss_pred EEEEEeccCCC-ceEEEEE---CCCCCEEEEEcCCCeEEEEECCC-------------------------------CCee
Confidence 34555655543 4667766 67899999999999999999871 0235
Q ss_pred eeEEEeCCCCCEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec-cCcceEEEEEC-CCEEEE
Q 001391 248 NLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG-HNARVWDCCLT-DSFIIT 323 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~--g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~-h~~~I~~v~~~-~~~l~s 323 (1088)
++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+............... .+.+ |...|++++|+ +.+|++
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~v~~s~~~~l~s 266 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA--ILPDVHKRQVYNVAWGFNGLIAS 266 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE--ECCSCCSSCEEEEEECTTSCEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee--ecccccccceEEEEEcCCCEEEE
Confidence 77889999999999999998 678999999999999999764210000001221 3444 89999999998 678999
Q ss_pred EeCCCcEEEEcC-CCc--eeEE-EcccCCCCeEEEEEcC--CCCEEEEEeCCCCEEEEEcC
Q 001391 324 AGEDCTCRVWGS-DGK--QLKM-IKEHIGRGIWRCLYDS--LSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~Dg~i~vWd~-~~~--~~~~-~~~h~~~~V~~l~~~~--dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
++.||+|++|+. .++ .+.. +.+|....|++++|+| ++++|++|+.||+|++|+++
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 999999999998 442 3333 3567653599999999 68899999999999999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=311.53 Aligned_cols=284 Identities=17% Similarity=0.256 Sum_probs=240.3
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
...+.+|.+ .|.+++|+ |+++ .+++++.|++|+|||+.. .+....+.+|.+.|.
T Consensus 101 ~~~l~gh~~-~V~~~~~~-------p~~~---~l~s~s~Dg~i~vwd~~~---------------~~~~~~l~~h~~~V~ 154 (410)
T 1vyh_C 101 KYALSGHRS-PVTRVIFH-------PVFS---VMVSASEDATIKVWDYET---------------GDFERTLKGHTDSVQ 154 (410)
T ss_dssp SCEEECCSS-CEEEEEEC-------SSSS---EEEEEESSSCEEEEETTT---------------CCCCEEECCCSSCEE
T ss_pred eEeecccCC-cEEEEEEc-------CCCC---EEEEEeCCCeEEEEECCC---------------CcEEEEEeccCCcEE
Confidence 445667666 79999999 7762 555556699999999985 346678889999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+++|+| ++++|++|+.|++|++||+.+++.+..+..+.. .+.++++ +|++.+|++|+.|++|++||+.
T Consensus 155 ~v~~~~---~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~V~~v~~---~p~~~~l~s~s~D~~i~~wd~~----- 222 (410)
T 1vyh_C 155 DISFDH---SGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-NVSSVSI---MPNGDHIVSASRDKTIKMWEVQ----- 222 (410)
T ss_dssp EEEECT---TSSEEEEEETTSCCCEEETTSSCEEECCCCCSS-CEEEEEE---CSSSSEEEEEETTSEEEEEETT-----
T ss_pred EEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC-CEEEEEE---eCCCCEEEEEeCCCeEEEEECC-----
Confidence 999999 999999999999999999999998888876654 4667776 6789999999999999999998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
++..+..+.+|...|.++.|+|++.++++++.|++|++||+.++.
T Consensus 223 ----------------------------~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~------- 267 (410)
T 1vyh_C 223 ----------------------------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------- 267 (410)
T ss_dssp ----------------------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------
T ss_pred ----------------------------CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------
Confidence 677888899999999999999999999999999999999998853
Q ss_pred eeeeceeeeccCcceEEEEECC----------------------CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEE
Q 001391 297 EEVGSSVLYGHNARVWDCCLTD----------------------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~~----------------------~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~ 353 (1088)
... .+.+|...|.+++|++ .+|++|+.|++|++||+ +++++..+.+|.. .|++
T Consensus 268 -~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~ 343 (410)
T 1vyh_C 268 -CKA--ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRG 343 (410)
T ss_dssp -EEE--EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEE
T ss_pred -eee--EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEE
Confidence 332 6788999999999973 47999999999999999 7889999999998 7999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-
Q 001391 354 CLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT- 432 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~- 432 (1088)
++|+|++++|++|+.||+|++||+.... .+..+..|...|.+++|+|++.
T Consensus 344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 344 VLFHSGGKFILSCADDKTLRVWDYKNKR-----------------------------CMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSC-----------------------------CCEEEECCSSCEEEEEECSSSSC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------------eEEEEcCCCCcEEEEEEcCCCCE
Confidence 9999999999999999999999985321 1122345667899999999885
Q ss_pred EEEEecCCeEEEEE
Q 001391 433 LYIATNHGYLYHTK 446 (1088)
Q Consensus 433 ll~~t~~g~i~~~~ 446 (1088)
++.++.+|.|..|+
T Consensus 395 l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 395 VVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEeCCCcEEEEe
Confidence 45556788887543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=296.62 Aligned_cols=280 Identities=15% Similarity=0.286 Sum_probs=236.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ |+.|+|||..+++.+..+..|.. .|.+++|+ |+++ .+++++
T Consensus 22 h~~~v~~~~~s--~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~s~~ 84 (312)
T 4ery_A 22 HTKAVSSVKFS--PN----GEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWS-------SDSN---LLVSAS 84 (312)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred cCCcEEEEEEC--CC----CCEEEEeeCCCeEEEEeCCCcccchhhccCCC-ceEEEEEc-------CCCC---EEEEEC
Confidence 66899999999 99 89999988 79999999999999999988766 79999999 7773 555556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.|++||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.+++.+..+.
T Consensus 85 ~d~~i~vwd~~~---------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 85 DDKTLKIWDVSS---------------GKCLKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCC---------------CcEEEEEcCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 699999999985 356778889999999999999 99999999999999999999999888887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-e
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V 253 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 253 (1088)
.+.. .+.++.+ ++++.++++|+.||.|++||+. .++.+..+ .
T Consensus 147 ~~~~-~v~~~~~---~~~~~~l~~~~~d~~i~~wd~~---------------------------------~~~~~~~~~~ 189 (312)
T 4ery_A 147 AHSD-PVSAVHF---NRDGSLIVSSSYDGLCRIWDTA---------------------------------SGQCLKTLID 189 (312)
T ss_dssp CCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCC-cEEEEEE---cCCCCEEEEEeCCCcEEEEECC---------------------------------CCceeeEEec
Confidence 6654 3556665 6789999999999999999998 45555554 3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE--EEEC---CCEEEEEeCCC
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD--CCLT---DSFIITAGEDC 328 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~--v~~~---~~~l~sg~~Dg 328 (1088)
.|...+..++|+|+++++++++.|+.|++||+.+++ .+. .+.+|...+.+ ..+. +.+|++|+.||
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--------CLK--TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--------EEE--EECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------EEE--EEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 567789999999999999999999999999998853 333 55666554322 2232 67899999999
Q ss_pred cEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEcC
Q 001391 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~--~Dg~I~iwd~~ 378 (1088)
.|++||+ +++.+..+.+|.. .|.+++|+|++++|++++ .|++|++|+.+
T Consensus 260 ~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 260 LVYIWNLQTKEIVQKLQGHTD-VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSS-CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEECCCchhhhhhhccCC-cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999 7888899999988 799999999999999997 69999999863
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=297.69 Aligned_cols=281 Identities=15% Similarity=0.227 Sum_probs=226.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-----CeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-----GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-----g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.++|++|+|+ |+ .+.+|++|+ |++|++||+.+ +..+..+.+|.. .|.+++|+ |+++ .
T Consensus 16 H~~~V~~l~~~--~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s-------~dg~---~ 79 (319)
T 3frx_A 16 HNGWVTSLATS--AG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLT-------ADGA---Y 79 (319)
T ss_dssp CSSCEEEEEEC--SS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEEC-------TTSS---E
T ss_pred ccceEEEEEcc--CC---CccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEEC-------CCCC---E
Confidence 67999999999 86 247888888 79999999864 356778888776 79999999 7773 4
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|++|+|||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||+. ++.
T Consensus 80 l~s~s~D~~v~~wd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~D~~i~vwd~~-~~~ 140 (319)
T 3frx_A 80 ALSASWDKTLRLWDVAT---------------GETYQRFVGHKSDVMSVDIDK---KASMIISGSRDKTIKVWTIK-GQC 140 (319)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSCEEEEEETTSCEEEEETT-SCE
T ss_pred EEEEeCCCEEEEEECCC---------------CCeeEEEccCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECC-CCe
Confidence 55556699999999985 456778899999999999999 99999999999999999996 455
Q ss_pred EEEeccCCceeEEEEeeecCC---CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 170 ILEVHSPERCLLYSMKLWGDN---LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s---~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
+..+..+.. .+.++.+.+.. .++..+++++.|+.|++||+. ..
T Consensus 141 ~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---------------------------------~~ 186 (319)
T 3frx_A 141 LATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---------------------------------QF 186 (319)
T ss_dssp EEEECCCSS-CEEEEEECCC------CCEEEEEETTSCEEEEETT---------------------------------TT
T ss_pred EEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC---------------------------------cc
Confidence 666665543 35566664322 256689999999999999998 66
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
.....+.+|...|.+++|+|++++|++++.|++|++||+.+++ .+. .+. +...|.+++|+ +.+++++
T Consensus 187 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~--------~~~--~~~-~~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--------AMY--TLS-AQDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------EEE--EEE-CCSCEEEEEECSSSSEEEEE
T ss_pred hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------EEE--Eec-CCCcEEEEEEcCCCCEEEEE
Confidence 7778889999999999999999999999999999999998853 332 333 44689999999 4566666
Q ss_pred eCCCcEEEEcCC-CceeEEEcc--------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 325 GEDCTCRVWGSD-GKQLKMIKE--------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 325 ~~Dg~i~vWd~~-~~~~~~~~~--------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+ +..+++|+++ +..+..+.. |.. .+.+++|+|+|++|++|+.||.|++|++.
T Consensus 256 ~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 256 T-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP-HAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp E-TTEEEEEEETTEEEEEEECCCCTTCCGGGCC-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred c-CCCcEEEEeCcCeeeeccCccccccccCcCc-ceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 5 5569999994 444444432 344 69999999999999999999999999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=299.54 Aligned_cols=321 Identities=17% Similarity=0.230 Sum_probs=238.8
Q ss_pred cceeeeccCCCC-cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE--EeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSH-WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~-~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+++..+.+|.+ .|++++|+| ++++||+|+.|++|+|||+.++.... .+.......+.++++ +|++.+|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp---~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~---sp~g~~l~s 78 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW---SPCGNYLAS 78 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECT---TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE---CTTSSEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECC---CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE---CCCCCEEEE
Confidence 567888999998 999999999 99999999999999999998876442 232333445777777 688999999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
|+.|++|++|+.... ....+..+.+|.+.|.+++|+|++++|++++.|+
T Consensus 79 ~s~D~~v~iw~~~~~-------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~ 127 (345)
T 3fm0_A 79 ASFDATTCIWKKNQD-------------------------------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127 (345)
T ss_dssp EETTSCEEEEEECCC--------------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCcEEEEEccCC-------------------------------CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC
Confidence 999999999998710 2356778899999999999999999999999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCc--eeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK--QLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~--~~~~~~~h~~~~V~~ 353 (1088)
+|++||+..... ...+. .+.+|...|.+++|+ +.+|++|+.|++|++|+. .++ +...+.+|.. .|++
T Consensus 128 ~v~iwd~~~~~~-----~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~ 199 (345)
T 3fm0_A 128 SVWVWEVDEEDE-----YECVS--VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWS 199 (345)
T ss_dssp CEEEEEECTTSC-----EEEEE--EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEE
T ss_pred eEEEEECCCCCC-----eEEEE--EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEE
Confidence 999999987533 23343 778999999999998 579999999999999999 443 4567889988 7999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe
Q 001391 354 CLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 432 (1088)
++|+|++++|++|+.|++|++|+.... ..+ .+.+....+...
T Consensus 200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~-------------------------------------~~~~~~~~~~~~ 242 (345)
T 3fm0_A 200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ-------------------------------------GVACSGSDPSWK 242 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEECTTCTT-------------------------------------CCCCC---CEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEeccccCCCCc-------------------------------------cceeeccCCccc
Confidence 999999999999999999999997311 000 000000000000
Q ss_pred EEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcc--e
Q 001391 433 LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ--L 510 (1088)
Q Consensus 433 ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~--~ 510 (1088)
. .....+.+...+.++++.+. +..+++++.|+.|++|+......... .
T Consensus 243 ~----------------------~~~~~~~h~~~v~~v~~~~~--------~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 243 C----------------------ICTLSGFHSRTIYDIAWCQL--------TGALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp E----------------------EEEECSSCSSCEEEEEECTT--------TCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred e----------------------eEEecCCCCCcEEEEEEecC--------CCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 0 01112333556777777544 47899999999999999976543222 2
Q ss_pred eeeeeeeccccceeeeEEEeecCCC-eEEEEECCCCeEEEEecCCCC
Q 001391 511 SFTFTWSAGIERQLLGTYWCKSLGH-RFIFTADPKGRLKLWQLCDPF 556 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~s~dg-~~L~s~~~dg~i~vwd~~~~~ 556 (1088)
.+.......+...+.. .+++|++ .+|++++.||.|++|++...+
T Consensus 293 ~~~~~~~~~h~~~V~~--v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNC--VAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEETTSSSSCEEE--EEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EEEeeecccccCcEeE--eEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 2222222233333433 4688887 599999999999999998653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=309.00 Aligned_cols=348 Identities=17% Similarity=0.167 Sum_probs=260.9
Q ss_pred ceEEecCCCc-------eeeeeEEEEEeccCCCCCCCC-EEEEEe-CCeEEEEEC----CCCe------eEEEEee----
Q 001391 6 LSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDL----EAGT------LIRPFQV---- 62 (1088)
Q Consensus 6 i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~-~laag~-d~~I~vwd~----~tg~------~~~~~~~---- 62 (1088)
+.+|++.... |.++|++++|+ |+ ++ +||+|+ |+.|+|||+ .+++ ....+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIVSSTWN--PL----DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL 100 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEEC--SS----CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC
T ss_pred cccccchhhhhheeeeeccCceEEEEEC--CC----CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc
Confidence 5677776654 45889999999 99 78 999988 699999999 8888 4555543
Q ss_pred e-----CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 63 F-----HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 63 ~-----~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
+ +...|.+++|+ |+++ .+++++.|+.|++|+.. .+.+..+.+|...|.+
T Consensus 101 ~~~~~~~~~~v~~~~~s-------~~~~---~l~~~~~dg~i~i~~~~----------------~~~~~~~~~~~~~v~~ 154 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWS-------HDGN---SIVTGVENGELRLWNKT----------------GALLNVLNFHRAPIVS 154 (425)
T ss_dssp C------CBCEEEEEEC-------TTSS---EEEEEETTSCEEEEETT----------------SCEEEEECCCCSCEEE
T ss_pred cccccCCCCceEEEEEc-------CCCC---EEEEEeCCCeEEEEeCC----------------CCeeeeccCCCccEEE
Confidence 1 34479999999 7773 45555669999999933 4567788899999999
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCcee--------------EEEEeeecCCCCCcEEEEEecCC
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL--------------LYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~--------------~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
++|+| ++++|++++.|+.|++||+.+++.+..+..+.... +.++.+ .++ ..+++++.+|
T Consensus 155 ~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g 227 (425)
T 1r5m_A 155 VKWNK---DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW---VDD-DKFVIPGPKG 227 (425)
T ss_dssp EEECT---TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE---EET-TEEEEECGGG
T ss_pred EEECC---CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE---cCC-CEEEEEcCCC
Confidence 99999 99999999999999999999998888776543320 333444 233 4688999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
.|++||+. ....+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 228 ~i~~~d~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 228 AIFVYQIT---------------------------------EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp CEEEEETT---------------------------------CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eEEEEEcC---------------------------------CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 99999998 566777888999999999999999999999999999999
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
|+.+.+. +. .+.+|...|.+++|+ +.++++++.|+.|++||+ +++.+..+..|.. +|.+++|+|+++
T Consensus 275 d~~~~~~--------~~--~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~ 343 (425)
T 1r5m_A 275 HGGNGNS--------QN--CFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDGQ 343 (425)
T ss_dssp CSSSBSC--------SE--EECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTSS
T ss_pred ECCCCcc--------ce--EecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCCC
Confidence 9988532 32 667899999999998 349999999999999999 7888888988887 799999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCC--CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCC--ceEEEEeccCCeEE-EE
Q 001391 362 LLVTAGFDSAIKVHQFQAFL--PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE--YVRCLHLTSEDTLY-IA 436 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~V~~l~~s~~~~ll-~~ 436 (1088)
+|++++.||.|++|++.... ...+.+.. ...+. +.....+..+..+.. .|.+++|+|++.++ ++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNR--------DGILN---PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC-------------------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCeEEEEECCCCccceeeeeccc--------ccccC---cccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 99999999999999994311 11111110 00000 111123445556654 89999999998655 66
Q ss_pred ecCCeEEEEEe
Q 001391 437 TNHGYLYHTKL 447 (1088)
Q Consensus 437 t~~g~i~~~~~ 447 (1088)
+.+|.+..|++
T Consensus 413 ~~dg~i~iw~~ 423 (425)
T 1r5m_A 413 YSLQEGSVVAI 423 (425)
T ss_dssp ESSSCCEEEEC
T ss_pred ecCceEEEEee
Confidence 78888886654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-31 Score=295.28 Aligned_cols=290 Identities=17% Similarity=0.246 Sum_probs=233.0
Q ss_pred cceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCC-----ceEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~-----~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
+.+..++.+|.++|++++|+| ++ ++|++|+.|++|++|++... ..+..+.+|.. .+.++++ ++++.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~---~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~---s~dg~~ 79 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSA---GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTL---TADGAY 79 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECS---SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEE---CTTSSE
T ss_pred EEEEEEEccccceEEEEEccC---CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEE---CCCCCE
Confidence 567788999999999999998 65 79999999999999998643 23455655554 3556666 688999
Q ss_pred EEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
|++|+.|++|++||+. +++.+..+.+|...|.+++|+|++.++++++
T Consensus 80 l~s~s~D~~v~~wd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 126 (319)
T 3frx_A 80 ALSASWDKTLRLWDVA---------------------------------TGETYQRFVGHKSDVMSVDIDKKASMIISGS 126 (319)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCEEEEEECC---------------------------------CCCeeEEEccCCCcEEEEEEcCCCCEEEEEe
Confidence 9999999999999998 7778889999999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--------CEEEEEeCCCcEEEEcC-CCceeEEEccc
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--------SFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--------~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h 346 (1088)
.|++|++||+... .+. .+.+|...|.++++.+ ..+++++.|++|++||+ .++....+.+|
T Consensus 127 ~D~~i~vwd~~~~---------~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 127 RDKTIKVWTIKGQ---------CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp TTSCEEEEETTSC---------EEE--EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCeEEEEECCCC---------eEE--EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 9999999999753 333 7789999999999973 27999999999999999 67778889999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 347 ~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
.. +|.+++|+|++++|++|+.||.|++||+.... .+..+ . ....|.+++
T Consensus 196 ~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~------------~-~~~~v~~~~ 244 (319)
T 3frx_A 196 NS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKK-----------------AMYTL------------S-AQDEVFSLA 244 (319)
T ss_dssp CS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------------EEEEE------------E-CCSCEEEEE
T ss_pred CC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------EEEEe------------c-CCCcEEEEE
Confidence 88 79999999999999999999999999995421 11111 1 124689999
Q ss_pred eccCCeEEEEecCCeEEEEEeccCCcceeEEeee------ecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ------VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 427 ~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~------~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
|+|++.+++++.++.+..+++..... ...+.. ..+...+.++++.+ ++++|++|+.||.|++|+
T Consensus 245 ~sp~~~~la~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp--------dg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 245 FSPNRYWLAAATATGIKVFSLDPQYL--VDDLRPEFAGYSKAAEPHAVSLAWSA--------DGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ECSSSSEEEEEETTEEEEEEETTEEE--EEEECCCCTTCCGGGCCCEEEEEECT--------TSSEEEEEETTSCEEEEE
T ss_pred EcCCCCEEEEEcCCCcEEEEeCcCee--eeccCccccccccCcCcceeEEEECC--------CCCEEEEeecCceEEEEE
Confidence 99999988888777777665533211 111110 11234577777754 458999999999999999
Q ss_pred EcC
Q 001391 501 VVG 503 (1088)
Q Consensus 501 ~~~ 503 (1088)
+.+
T Consensus 315 ~~t 317 (319)
T 3frx_A 315 VMT 317 (319)
T ss_dssp EEE
T ss_pred Eee
Confidence 875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=296.36 Aligned_cols=282 Identities=14% Similarity=0.212 Sum_probs=220.9
Q ss_pred eeeeeEEEEE-----eccC-CCCCCCCEEEEEe-CCeEEEEECCC-------CeeEEEEeeeCCcceEEEEecccccccC
Q 001391 16 YLGEISALCF-----VHLP-SHLSSLPFLLAGS-GSQVLLYDLEA-------GTLIRPFQVFHGIRLHGISCNFINCTEG 81 (1088)
Q Consensus 16 ~~~~V~~v~f-----s~~p-d~~~~~~~laag~-d~~I~vwd~~t-------g~~~~~~~~~~~~~V~~i~~s~~~~~~~ 81 (1088)
|.++|++++| + | + +++|++|+ |++|+|||+.+ +..+..+.+|.. .|.+++|+
T Consensus 20 H~~~V~~~~~~~s~~~--~~d----~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~~------- 85 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKE--NED----SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLALS------- 85 (343)
T ss_dssp CSSCEEEEEECCCSST--TCC----CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEEC-------
T ss_pred chhhhhheeeEEEeec--CCC----CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEEC-------
Confidence 6789999999 5 5 5 78999988 79999999875 345667777766 79999999
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
|++. .+++++.|++|+|||+.. .+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++
T Consensus 86 ~~~~---~l~s~s~D~~v~lwd~~~---------------~~~~~~~~~h~~~v~~v~~sp---~~~~l~s~~~d~~i~~ 144 (343)
T 2xzm_R 86 QENC---FAISSSWDKTLRLWDLRT---------------GTTYKRFVGHQSEVYSVAFSP---DNRQILSAGAEREIKL 144 (343)
T ss_dssp SSTT---EEEEEETTSEEEEEETTS---------------SCEEEEEECCCSCEEEEEECS---STTEEEEEETTSCEEE
T ss_pred CCCC---EEEEEcCCCcEEEEECCC---------------CcEEEEEcCCCCcEEEEEECC---CCCEEEEEcCCCEEEE
Confidence 7762 445556699999999985 356778889999999999999 9999999999999999
Q ss_pred EEcCCCceEEEec--cCCceeEEEEeeecCC-------CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 162 WDISNSSIILEVH--SPERCLLYSMKLWGDN-------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 162 Wd~~~~~~~~~~~--~~~~~~~~s~~~~~~s-------~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
||+... ...... ......+.++++.+.. +.+.++++++.||.|++||..
T Consensus 145 wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--------------------- 202 (343)
T 2xzm_R 145 WNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--------------------- 202 (343)
T ss_dssp EESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---------------------
T ss_pred EeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---------------------
Confidence 999743 333322 1223345666663321 223789999999999999954
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
......+.+|...|.+++|+|++++|++++.|+.|++||+..... .. ....+...|.
T Consensus 203 -------------~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-------~~---~~~~~~~~v~ 259 (343)
T 2xzm_R 203 -------------FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-------PQ---REFDAGSTIN 259 (343)
T ss_dssp -------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-------CS---EEEECSSCEE
T ss_pred -------------CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-------cc---eeecCCCcEE
Confidence 455677889999999999999999999999999999999954321 11 2234556799
Q ss_pred EEEEC-CCEEEEEeCCCcEEEEcC-CCceeE--EEc-----------ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 313 DCCLT-DSFIITAGEDCTCRVWGS-DGKQLK--MIK-----------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 313 ~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~--~~~-----------~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++|+ +..+++++.|+.+++|++ +++... .+. +|.. .|++++|+|++++|++|+.||.|++|++
T Consensus 260 ~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP-QCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp EEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC-CEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC-ceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 99999 344555677899999998 444322 333 5666 6999999999999999999999999998
Q ss_pred C
Q 001391 378 Q 378 (1088)
Q Consensus 378 ~ 378 (1088)
.
T Consensus 339 ~ 339 (343)
T 2xzm_R 339 E 339 (343)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-30 Score=291.65 Aligned_cols=292 Identities=13% Similarity=0.211 Sum_probs=236.1
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
.+....+.+|.+.|++++|+| ++++|++|+.|++|++||+.+++.+..+..+.. .+.++++ +|++.+|++|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~---s~~~~~l~s~~~ 117 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGT---DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAY---APSGNYVACGGL 117 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEE---CTTSSEEEEEET
T ss_pred chhheeecCCCCceEEEEECC---CCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEE---CCCCCEEEEEeC
Confidence 566788999999999999999 999999999999999999999998888776654 3556666 688999999999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~ 281 (1088)
|+.|++|++.+.+ ........+.+|.+.|.++.|++++. +++++.|++|+
T Consensus 118 d~~v~iw~~~~~~-----------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~ 167 (340)
T 1got_B 118 DNICSIYNLKTRE-----------------------------GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCA 167 (340)
T ss_dssp TCEEEEEETTTCS-----------------------------BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred CCeEEEEECccCC-----------------------------CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEE
Confidence 9999999987211 02245667889999999999998875 89999999999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcC
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
+||+.++ +.+. .+.+|...|.+++|+ +.++++|+.|++|++||+ +++.+..+.+|.. .|.+++|+|
T Consensus 168 ~wd~~~~--------~~~~--~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p 236 (340)
T 1got_B 168 LWDIETG--------QQTT--TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFP 236 (340)
T ss_dssp EEETTTT--------EEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECT
T ss_pred EEECCCC--------cEEE--EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcC
Confidence 9999885 3343 778999999999998 579999999999999999 7888999999998 799999999
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-Ee
Q 001391 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-AT 437 (1088)
Q Consensus 359 dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t 437 (1088)
++++|++|+.||+|++||++... .+.... ...+...|.+++|+|++.+++ ++
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~~-----------------~~~~~~----------~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRADQ-----------------ELMTYS----------HDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE-----------------EEEEEC----------CTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCc-----------------EEEEEc----------cCCcccceEEEEECCCCCEEEEEC
Confidence 99999999999999999995421 011110 011224689999999986554 56
Q ss_pred cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
.+|.+..|++.. ......+.+| ..+|.++++.++ +.+|++|+.||.|++|+
T Consensus 290 ~d~~i~vwd~~~---~~~~~~~~~h-~~~v~~~~~s~d--------g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 290 DDFNCNVWDALK---ADRAGVLAGH-DNRVSCLGVTDD--------GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSEEEEEETTT---CCEEEEEECC-SSCEEEEEECTT--------SSCEEEEETTSCEEEEC
T ss_pred CCCeEEEEEccc---CcEeeEeecC-CCcEEEEEEcCC--------CCEEEEEcCCccEEecC
Confidence 778888665433 3323344555 568999988554 48999999999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=293.02 Aligned_cols=311 Identities=18% Similarity=0.262 Sum_probs=229.0
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC--ceEEEe-ccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEV-HSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~--~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+++..+.+|.+.|++++|+| + +||+|+.|++|++||+..+ .....+ .......+.++++ +|++.+|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~---~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~---sp~~~~las 75 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQ---G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW---RPHTSLLAA 75 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEET---T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEE---CTTSSEEEE
T ss_pred cccceeeccCCCceeeeccCC---C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEE---CCCCCEEEE
Confidence 567888999999999999998 6 9999999999999999875 344555 2324445778877 678999999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
|+.|++|++||+...... ......+..+.+|.+.|.+++|+|++++|++++.|+
T Consensus 76 ~s~D~~v~iw~~~~~~~~--------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~ 129 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADR--------------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK 129 (330)
T ss_dssp EETTSCEEEEEC---------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS
T ss_pred EeCCCcEEEEEcccCcCc--------------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999998611000 002356777899999999999999999999999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CC--ceeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~--~~~~~~~~h~~~~V~~ 353 (1088)
+|++||+..... ..+.+. .+.+|...|.+++|+ +.+|++|+.|++|++||. .+ +++..+.+|.+ .|++
T Consensus 130 ~v~iwd~~~~~~----~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~ 202 (330)
T 2hes_X 130 SVWIWETDESGE----EYECIS--VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWS 202 (330)
T ss_dssp CEEEEECCTTCC----CCEEEE--EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEE
T ss_pred EEEEEeccCCCC----CeEEEE--EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEE
Confidence 999999954211 023343 778999999999998 579999999999999998 44 57788999998 7999
Q ss_pred EEEcCC--CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeecc-CCCCceEEEEeccC
Q 001391 354 CLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD-SKSEYVRCLHLTSE 430 (1088)
Q Consensus 354 l~~~~d--g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~ 430 (1088)
++|+|+ +.+|++|+.|++|++|++...... ....+ .....+. .|...|.+++|+++
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~-------------~~~~~--------~~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED-------------DQQEW--------VCEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTT-------------SCEEE--------EEEEECCSCCSSCEEEEEECTT
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCcc-------------cccee--------EEeeecccccccceEEEEEcCC
Confidence 999998 679999999999999998432100 00000 0111222 26678999999988
Q ss_pred CeEEEEecCCeEEEEEeccCCcceeEEee---eecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 431 DTLYIATNHGYLYHTKLCDMDSVNWNKIL---QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 431 ~~ll~~t~~g~i~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
+.+++++.+|.+..|+.. ...|..+. .+|....+.++++.+. .++.+|++|+.||.|++|++..
T Consensus 262 ~~l~s~~~dg~v~iw~~~---~~~~~~~~~~~~~h~~~~v~~v~~~~~------~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 GLIASVGADGVLAVYEEV---DGEWKVFAKRALCHGVYEINVVKWLEL------NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEETTSCEEEEEEE---TTEEEEEEEESCTTTTSCEEEEEEC-----------CCEEEEETTSEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEEcC---CCceEEEeccccccccceEEEEEEecC------CCceEEEEecCCCcEEEEEecc
Confidence 888888999999866543 33332222 2343337888887652 1347899999999999999763
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=299.35 Aligned_cols=306 Identities=11% Similarity=0.111 Sum_probs=223.4
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccce
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~ 124 (1088)
..+.|++..... ..++. .|.+++|+ ||| .+|++++|+++++||............+ ....
T Consensus 15 ~~r~w~~~~~~~----~~~~~-~v~~~~fs-------~dG----~~l~~~sd~~~r~Wd~~~~~~~~~~~~~----~~~~ 74 (344)
T 4gqb_B 15 AAREWNLPPNAP----ACMER-QLEAARYR-------SDG----ALLLGASSLSGRCWAGSLWLFKDPCAAP----NEGF 74 (344)
T ss_dssp --------CCSC----SSCCS-EEEEEEEC-------TTS----CEEEEEECCSSSCCCEEEEEESSGGGTT----CGGG
T ss_pred cccccCCCCCCc----ccccC-CEEEEEEC-------CCC----CEEEEEeCCceEEeeceeeeeccccccC----Ccce
Confidence 456788765433 22344 59999999 888 6777777888898875421100000000 0112
Q ss_pred eeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec---cCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH---SPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~---~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
......|...|.+++|+| ++ .|++|+.||+|+|||+.+++.+.... ..+...+.+++| ++++.+|++|+.
T Consensus 75 ~~~~~~~~~~v~~~~~s~---d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~---spdg~~l~sgs~ 147 (344)
T 4gqb_B 75 CSAGVQTEAGVADLTWVG---ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV---LSSGTQAVSGSK 147 (344)
T ss_dssp CSEEEEESSCEEEEEEET---TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE---CTTSSEEEEEET
T ss_pred eeeeeccCCCEEEEEEeC---CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE---CCCCCEEEEEeC
Confidence 222334667899999999 75 67899999999999999887654432 123345777777 688999999999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSA 280 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v 280 (1088)
|++|++||+. +++.+..+.+|.+.|.+++|+|++. .+++++.|++|
T Consensus 148 d~~i~iwd~~---------------------------------~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v 194 (344)
T 4gqb_B 148 DICIKVWDLA---------------------------------QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRI 194 (344)
T ss_dssp TSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCeEEEEECC---------------------------------CCcEEEEEcCcCCceEEEEecCCCCCceeeecccccc
Confidence 9999999998 7888999999999999999999884 78999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
++||+++++. ........|...+.+++|+ +.+|++|+.||+|++||+ +++++..+.+|.. .|++++|
T Consensus 195 ~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~f 265 (344)
T 4gqb_B 195 LLWDTRCPKP--------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVF 265 (344)
T ss_dssp EEEETTSSSC--------EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEE
T ss_pred ccccccccce--------eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEE
Confidence 9999998643 2211334566779999998 468999999999999999 7889999999998 7999999
Q ss_pred cCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EE
Q 001391 357 DSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LY 434 (1088)
Q Consensus 357 ~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll 434 (1088)
+|++ ++|++|+.|++|++||+.... +..+.+|.+.|++++|+|++. ++
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~------------------------------~~~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSE------------------------------LFRSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCE------------------------------EEEECCCSSCEEEEEECSSSTTEE
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCc------------------------------EEEEcCCCCCEEEEEEeCCCCeEE
Confidence 9998 589999999999999985421 112346778899999999874 55
Q ss_pred E-EecCCeEEEEEecc
Q 001391 435 I-ATNHGYLYHTKLCD 449 (1088)
Q Consensus 435 ~-~t~~g~i~~~~~~~ 449 (1088)
+ ++.|+.|..|++..
T Consensus 316 as~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 316 TTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEEETTSCEEEEECCC
T ss_pred EEEcCCCeEEEEECCC
Confidence 4 46789998776643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=307.96 Aligned_cols=320 Identities=15% Similarity=0.256 Sum_probs=233.4
Q ss_pred CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCce
Q 001391 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1088)
Q Consensus 157 g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1088)
..+..|+.....+...+.+|.. .++++++ +|++.+|++|+.||+|++||+.
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~-~V~~~~~---sp~~~~l~s~s~D~~v~iWd~~------------------------- 96 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSG-KVYSLDW---TPEKNWIVSASQDGRLIVWNAL------------------------- 96 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSS-CEEEEEE---CTTSSCEEEEETTSEEEEEETT-------------------------
T ss_pred ccccccccceeEEeeccccccc-EEEEEEE---cCCCCEEEEEeCCCeEEEEECC-------------------------
Confidence 3455677667777777877765 4677777 6889999999999999999998
Q ss_pred eEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE
Q 001391 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (1088)
Q Consensus 237 ~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~ 316 (1088)
++.....+.+|...|.+++|+|+++++++++.|+.+++||+....... ...... ..+.+|...|.++.|
T Consensus 97 --------~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~-~~~~~~--~~~~gh~~~v~~~~~ 165 (380)
T 3iz6_a 97 --------TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD-GNMPVS--RVLTGHKGYASSCQY 165 (380)
T ss_dssp --------TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-CSSTTC--CBCCCCSSCCCCCBC
T ss_pred --------CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-CCccce--eeccCCCcceEEEEE
Confidence 677788899999999999999999999999999999999997643200 001112 267899999999999
Q ss_pred C---CCEEEEEeCCCcEEEEcC-CCceeEEE-----cccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcCCCCCCccc
Q 001391 317 T---DSFIITAGEDCTCRVWGS-DGKQLKMI-----KEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQAFLPGSLE 386 (1088)
Q Consensus 317 ~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~-----~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~~~~~~~~~ 386 (1088)
. +..|++|+.|++|++||+ +++.+..+ .+|.. .|.++++++ ++++|++|+.|++|++||++...
T Consensus 166 ~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----- 239 (380)
T 3iz6_a 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLRITS----- 239 (380)
T ss_dssp CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-----
T ss_pred ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-----
Confidence 7 357999999999999999 77887777 56777 699999976 88999999999999999985210
Q ss_pred CCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcc
Q 001391 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMP 466 (1088)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1088)
..+..+.+|...|.+++|+|++
T Consensus 240 -----------------------~~~~~~~~h~~~v~~v~~~p~~----------------------------------- 261 (380)
T 3iz6_a 240 -----------------------RAVRTYHGHEGDINSVKFFPDG----------------------------------- 261 (380)
T ss_dssp -----------------------CCCEEECCCSSCCCEEEECTTS-----------------------------------
T ss_pred -----------------------cceEEECCcCCCeEEEEEecCC-----------------------------------
Confidence 0011222333445555555443
Q ss_pred eEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCe
Q 001391 467 IICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGR 546 (1088)
Q Consensus 467 i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~ 546 (1088)
..+++|+.||.|++||+.++.......... .............+++|+|++|++|+.||.
T Consensus 262 ------------------~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 262 ------------------QRFGTGSDDGTCRLFDMRTGHQLQVYNREP--DRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp ------------------SEEEEECSSSCEEEEETTTTEEEEEECCCC--SSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred ------------------CeEEEEcCCCeEEEEECCCCcEEEEecccc--cccccccCceEEEEECCCCCEEEEEECCCC
Confidence 456666667777777766543221110000 000000001112578999999999999999
Q ss_pred EEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 547 LKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 547 i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
|++||+...... ........+|...|++++|+|||++|++|+.||+|+||++..
T Consensus 322 i~vwd~~~~~~~-----------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 322 CYVWDTLLAEMV-----------LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEETTTCCEE-----------EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEECCCCceE-----------EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999998754311 111122347999999999999999999999999999999874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-30 Score=291.27 Aligned_cols=298 Identities=13% Similarity=0.180 Sum_probs=233.7
Q ss_pred cceeeeccCCCCcEEEEEE-----ecccCCCCEEEEEEcCCcEEEEEcCCC-------ceEEEeccCCceeEEEEeeecC
Q 001391 122 LSLVQSLPRLSHWVFDVCF-----LKVCNGNRSLAIGCSDNSIRVWDISNS-------SIILEVHSPERCLLYSMKLWGD 189 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f-----~p~~~d~~~lasgs~Dg~V~iWd~~~~-------~~~~~~~~~~~~~~~s~~~~~~ 189 (1088)
.++...+.+|.+.|++++| ++ .++++|++|+.|++|++||+.+. .....+.+|.. .+.++++
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~--~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~--- 84 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKEN--EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLAL--- 84 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTT--CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEE---
T ss_pred eeeeeeeccchhhhhheeeEEEeecC--CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEE---
Confidence 5567789999999999999 43 27889999999999999999754 23445555544 4666766
Q ss_pred CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC
Q 001391 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1088)
Q Consensus 190 s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~ 269 (1088)
++++.++++|+.|++|++||+. +++.+..+.+|.+.|.+++|+|+++
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~---------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~ 131 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLR---------------------------------TGTTYKRFVGHQSEVYSVAFSPDNR 131 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETT---------------------------------SSCEEEEEECCCSCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCcEEEEECC---------------------------------CCcEEEEEcCCCCcEEEEEECCCCC
Confidence 6789999999999999999998 6777888999999999999999999
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC------------CEEEEEeCCCcEEEEcCCC
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------------SFIITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~------------~~l~sg~~Dg~i~vWd~~~ 337 (1088)
+|++++.|++|++||+.... ........+|...|.+++|++ .+|++++.|++|++||..+
T Consensus 132 ~l~s~~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 203 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILGEC--------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203 (343)
T ss_dssp EEEEEETTSCEEEEESSSCE--------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCEEEEEeccCCc--------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC
Confidence 99999999999999997531 111012347889999999983 5899999999999999888
Q ss_pred ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccC
Q 001391 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417 (1088)
Q Consensus 338 ~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1088)
+....+.+|.. +|.+++|+|++++|++|+.||.|++||+...... ... + .
T Consensus 204 ~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~----------------~~~------------~-~ 253 (343)
T 2xzm_R 204 QIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP----------------QRE------------F-D 253 (343)
T ss_dssp EEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC----------------SEE------------E-E
T ss_pred ceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCCCccc----------------cee------------e-c
Confidence 88888999988 7999999999999999999999999998321100 000 0 1
Q ss_pred CCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeee---------ecCCcceEEEecCCCCCCCcCCCCCeEE
Q 001391 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ---------VSEGMPIICMDLLSNEPKYPCGIDDWVA 488 (1088)
Q Consensus 418 ~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~---------~~~~~~i~~l~~~~~~~~~s~~~~~~la 488 (1088)
+...|.+++|+|++.+++++.++.+..|++..........+.. ..+...+.++++.++ ++.|+
T Consensus 254 ~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------g~~l~ 325 (343)
T 2xzm_R 254 AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL--------GKKLF 325 (343)
T ss_dssp CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS--------SCCEE
T ss_pred CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC--------CCeEE
Confidence 1235899999999999998888888877665433221101110 023456888888654 48999
Q ss_pred EecCCCCEEEEEEcCC
Q 001391 489 LGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 489 ~g~~dg~I~iw~~~~~ 504 (1088)
+|+.||.|++|++.++
T Consensus 326 sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 326 AGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEETTSEEEEEEEEEE
T ss_pred EecCCceEEEEEEEcc
Confidence 9999999999998753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-30 Score=288.50 Aligned_cols=320 Identities=13% Similarity=0.151 Sum_probs=253.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+.++|.+++|+ || +++++++. ++.+.+|+............|.. .|.+++|+ |++ .+++++
T Consensus 8 ~~~~v~~~~~s--~d----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~----~~l~~~ 69 (337)
T 1gxr_A 8 GSKPAYSFHVT--AD----GQMQPVPFPPDALIGPGIPRHARQINTLNHGE-VVCAVTIS-------NPT----RHVYTG 69 (337)
T ss_dssp EEEECCEEEEC--SS----SCEEECCCCTTSSSSTTCCSEEEEEEEECCSS-CCCEEEEC-------SSS----SEEEEE
T ss_pred cCCceeEEEEC--CC----CCEEEeecCCCcEeccccCCccccceeccCCC-ceEEEEEe-------cCC----cEEEEc
Confidence 56789999999 99 89998877 46666666554444333444444 79999999 777 677777
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeec--cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eE
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--II 170 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~ 170 (1088)
+|+.|++|++..... ...+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.+++ ..
T Consensus 70 ~dg~i~iw~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 70 GKGCVKVWDISHPGN------------KSPVSQLDCLNRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp CBSEEEEEETTSTTC------------CSCSEEEECSCTTSBEEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred CCCeEEEEECCCCCc------------eeeeecccccCCCCcEEEEEEcC---CCCEEEEEcCCCcEEEEECCCCCccee
Confidence 799999999986431 1222223 37899999999999 99999999999999999999887 34
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
..+..+. ..+.++++ ++++.++++++.||.|++||+. +.+.+.
T Consensus 135 ~~~~~~~-~~i~~~~~---~~~~~~l~~~~~dg~v~~~d~~---------------------------------~~~~~~ 177 (337)
T 1gxr_A 135 AELTSSA-PACYALAI---SPDSKVCFSCCSDGNIAVWDLH---------------------------------NQTLVR 177 (337)
T ss_dssp EEEECSS-SCEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TTEEEE
T ss_pred eecccCC-CceEEEEE---CCCCCEEEEEeCCCcEEEEeCC---------------------------------CCceee
Confidence 4444443 33556666 5788999999999999999998 677788
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
.+.+|...|.+++|+|+++++++++.|+.|++||+.+++. + ....|...+.+++|+ +.++++++.|+
T Consensus 178 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 246 (337)
T 1gxr_A 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ--------L---QQHDFTSQIFSLGYCPTGEWLAVGMESS 246 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------E---EEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce--------E---eeecCCCceEEEEECCCCCEEEEEcCCC
Confidence 8899999999999999999999999999999999988532 2 334577889999998 67999999999
Q ss_pred cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCC
Q 001391 329 TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (1088)
Q Consensus 329 ~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1088)
.+++||+.......+..|.. +|.+++|+|++++|++++.||.|++|++..... +..
T Consensus 247 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------------~~~------ 302 (337)
T 1gxr_A 247 NVEVLHVNKPDKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----------------IFQ------ 302 (337)
T ss_dssp CEEEEETTSSCEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------EEE------
T ss_pred cEEEEECCCCCeEEEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeE-----------------EEE------
Confidence 99999996555667888887 799999999999999999999999999854211 111
Q ss_pred ccceeeccCCCCceEEEEeccCCeE-EEEecCCeEEEEEe
Q 001391 409 SEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKL 447 (1088)
Q Consensus 409 ~~~~~~~~~~~~~V~~l~~s~~~~l-l~~t~~g~i~~~~~ 447 (1088)
..+...+.+++|+|++.+ ++++.+|.+..|++
T Consensus 303 -------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 -------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 123457999999998855 45677888886654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-29 Score=289.69 Aligned_cols=295 Identities=14% Similarity=0.185 Sum_probs=235.9
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
.+....+.+|.+.|++++|+| ++++|+||+.|++|++||..+++....+..+.. .+.++++ +|++..+++|+.
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~---d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-~v~~~~~---sp~g~~lasg~~ 126 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCK---DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAY---APSGCAIACGGL 126 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCEEEE---CTTSSEEEEEST
T ss_pred cEEEEEecCCCCeEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCcceEEecCCC-CEEEEEE---CCCCCEEEEeeC
Confidence 456788999999999999999 999999999999999999999988877765543 3445555 689999999999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~ 281 (1088)
|+.+++|++....... .......+.+|.+.|.+++|+|++..|++++.|++|+
T Consensus 127 d~~i~v~~~~~~~~~~---------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~ 179 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNEN---------------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179 (354)
T ss_dssp TSEEEEEECCCCTTCC---------------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCEEEEEEecccccc---------------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEE
Confidence 9999999987221110 1234556778999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
+||+.++ +.+. .+.+|...|.++++. +.+|++|+.||+|++||+ +++++..+..|.. .|.+++|
T Consensus 180 lwd~~~~--------~~~~--~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~ 248 (354)
T 2pbi_B 180 LWDVESG--------QLLQ--SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRY 248 (354)
T ss_dssp EEETTTC--------CEEE--EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEE
T ss_pred EEeCCCC--------eEEE--EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEE
Confidence 9999885 3343 778999999999996 369999999999999999 7888999999998 6999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-
Q 001391 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI- 435 (1088)
Q Consensus 357 ~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~- 435 (1088)
+|++.+|++|+.|++|++||+.... .+.... ...+...+.+++|+|++.+++
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~~-----------------~~~~~~----------~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRADR-----------------EVAIYS----------KESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTE-----------------EEEEEC----------CTTCCSCEEEEEECTTSSEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCc-----------------EEEEEc----------CCCcccceeEEEEeCCCCEEEE
Confidence 9999999999999999999995421 000000 011123588999999986655
Q ss_pred EecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
++.++.+..|++.... ....+.+| ...|.++++.++ +.+|++|+.||.|++|+
T Consensus 302 g~~d~~i~vwd~~~~~---~~~~l~~h-~~~v~~l~~spd--------g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGS---RVSILFGH-ENRVSTLRVSPD--------GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCS---EEEEECCC-SSCEEEEEECTT--------SSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCc---eEEEEECC-CCcEEEEEECCC--------CCEEEEEcCCCCEEecC
Confidence 5678889866654332 22333444 578999998654 48999999999999995
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-29 Score=286.89 Aligned_cols=283 Identities=15% Similarity=0.219 Sum_probs=228.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-----eeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.++|++|+|+ |+ .+++|++|+ |++|+|||+.++ .+...+.+|.. .|.+++|+ |+++ .
T Consensus 37 H~~~V~~v~~s--p~---~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~-~V~~~~~s-------~dg~---~ 100 (340)
T 4aow_A 37 HNGWVTQIATT--PQ---FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH-FVSDVVIS-------SDGQ---F 100 (340)
T ss_dssp CSSCEEEEEEC--TT---CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS-CEEEEEEC-------TTSS---E
T ss_pred ccCCEEEEEEe--CC---CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC-CEEEEEEC-------CCCC---E
Confidence 77999999999 97 247999888 899999998764 35566777665 79999999 7773 4
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|+.|++|+... .........+...+..+.+++ ++.+|++|+.|+.+++||+.....
T Consensus 101 l~s~~~d~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTT---------------GTTTRRFVGHTKDVLSVAFSS---DNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEcccccceEEeecc---------------cceeeeecCCCCceeEEEEee---cCccceeecCCCeEEEEEeCCCce
Confidence 55556699999999874 344555667888999999999 999999999999999999987665
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
...........+..+++.. .....++++++.|+.|++||+. ..+.+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~---------------------------------~~~~~ 208 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSP-NSSNPIIVSCGWDKLVKVWNLA---------------------------------NCKLK 208 (340)
T ss_dssp EEECSSSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETT---------------------------------TTEEE
T ss_pred EEEEeccccCcccceEEcc-CCCCcEEEEEcCCCEEEEEECC---------------------------------CCcee
Confidence 5443333334455555533 3456788999999999999998 67788
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDC 328 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg 328 (1088)
..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+.+ .+ ....+...|.+++|+ +..+++++.|+
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--------~~---~~~~~~~~v~~~~~~~~~~~~~~~~d~ 277 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--------HL---YTLDGGDIINALCFSPNRYWLCAATGP 277 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------EE---EEEECSSCEEEEEECSSSSEEEEEETT
T ss_pred eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--------ee---eeecCCceEEeeecCCCCceeeccCCC
Confidence 8899999999999999999999999999999999998853 33 223345689999998 56788899999
Q ss_pred cEEEEcC-CCceeEEE---------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 329 TCRVWGS-DGKQLKMI---------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~---------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|++||+ .+..+..+ ..|.. .|++++|+|++++|++|+.||.|++||++
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999 44444443 35666 69999999999999999999999999984
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=296.67 Aligned_cols=309 Identities=11% Similarity=0.107 Sum_probs=217.7
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-------CCEEEEEEeccC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-------EKRVKLFELNFE 107 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-------d~~v~iw~l~~~ 107 (1088)
..|+.+..+.....|++....+ ..|++ .|.+++|| ||| .+|++++ |++|++|+....
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~~p----~~H~~-~V~~v~fS-------pDG----~~las~s~d~~~~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVTAP----ACMEV-QIGAVRYR-------RDG----ALLLAASSLSSRTWGGSIWVFKDPEG 80 (357)
T ss_dssp ---------------------------CCCS-EEEEEEEC-------SSS----CEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred ceEEecCCCccccccCCCCCCc----ccccC-CEEEEEEC-------CCC----CEEEEEcCCCCccccCeEEEEECCCC
Confidence 4444444467889999764332 35555 79999999 898 5666654 567888876643
Q ss_pred CCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec---cCCceeEEEE
Q 001391 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH---SPERCLLYSM 184 (1088)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~---~~~~~~~~s~ 184 (1088)
.. ...+.....+|...|.+++|+| ++.+ ++++.||+|+|||+.+++...... ......+.++
T Consensus 81 ~~-----------~~~~~~~~~~~~~~V~~~~~s~---d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v 145 (357)
T 4g56_B 81 AP-----------NESLCTAGVQTEAGVTDVAWVS---EKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145 (357)
T ss_dssp -------------CGGGCSEEEECSSCEEEEEEET---TTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred Cc-----------ceeEecccCCCCCCEEEEEEcC---CCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence 20 1234445567999999999999 8764 567889999999998876543221 1223456777
Q ss_pred eeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEE
Q 001391 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (1088)
Q Consensus 185 ~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~ 264 (1088)
++ +|++.+|++|+.|+.|++||+. +++.+..+.+|...|.+++|
T Consensus 146 ~~---spdg~~l~sgs~dg~v~iwd~~---------------------------------~~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 146 SV---FSDGTQAVSGGKDFSVKVWDLS---------------------------------QKAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp EE---CSSSSEEEEEETTSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEE
T ss_pred EE---CCCCCEEEEEeCCCeEEEEECC---------------------------------CCcEEEEEcCCCCCEEEEEE
Confidence 76 6889999999999999999998 77888899999999999999
Q ss_pred cCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCce
Q 001391 265 SSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQ 339 (1088)
Q Consensus 265 sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~ 339 (1088)
+|++. ++++++.|++|++||+++++. ........|...+.+++|+ +.+|++|+.|+.|++||+ ++++
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~--------~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKP--------ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSC--------BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred ccCCCceeeeeccCCceEEEECCCCce--------eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 99875 789999999999999988643 2112445677889999998 468999999999999999 7888
Q ss_pred eEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCC
Q 001391 340 LKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (1088)
Q Consensus 340 ~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (1088)
+..+.+|.. +|++++|+|++ ++|++|+.|++|+|||++... .+ ...+|
T Consensus 262 ~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~------------------~~------------~~~~H 310 (357)
T 4g56_B 262 AQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSE------------------VF------------RDLSH 310 (357)
T ss_dssp CEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCE------------------EE------------EECCC
T ss_pred eEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc------------------Ee------------EECCC
Confidence 999999988 79999999987 589999999999999985421 11 11246
Q ss_pred CCceEEEEecc-CCeE-EEEecCCeEEEEEecc
Q 001391 419 SEYVRCLHLTS-EDTL-YIATNHGYLYHTKLCD 449 (1088)
Q Consensus 419 ~~~V~~l~~s~-~~~l-l~~t~~g~i~~~~~~~ 449 (1088)
.+.|++++|+| ++.+ +.++.+|.|..|++..
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 67899999998 5654 4567889999777644
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-29 Score=297.49 Aligned_cols=276 Identities=18% Similarity=0.299 Sum_probs=229.5
Q ss_pred eeee-eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGE-ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~-V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|.++ ++++.|+ +.+|++|+ |++|++||+.+++.+..+.+|.+ .|.+++|+ +++ .++++
T Consensus 120 h~~~v~~~~~~~--------~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~~-------~~~----~l~s~ 179 (464)
T 3v7d_B 120 HMTSVITCLQFE--------DNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYA-------HGG----ILVSG 179 (464)
T ss_dssp CSSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC-------STT----EEEEE
T ss_pred CCCCcEEEEEEC--------CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc-CEEEEEEc-------CCC----EEEEE
Confidence 3344 6788877 56888888 79999999999999999998777 79999999 665 66666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE---
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--- 170 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~--- 170 (1088)
+.|++|++||+.. .+.+..+.+|.+.|.+++|++ .+++.+|++|+.|++|++||+.++...
T Consensus 180 s~dg~i~vwd~~~---------------~~~~~~~~~h~~~v~~l~~~~-~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 180 STDRTVRVWDIKK---------------GCCTHVFEGHNSTVRCLDIVE-YKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEEEE-SSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred eCCCCEEEEECCC---------------CcEEEEECCCCCccEEEEEec-CCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 7799999999985 456778889999999999995 127789999999999999999877543
Q ss_pred --------------------EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 171 --------------------LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 171 --------------------~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
..+..+.. .+.++ ++++.++++|+.||.|++||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-----~~~~~~l~~~~~d~~i~vwd~~------------------- 298 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV-----SGHGNIVVSGSYDNTLIVWDVA------------------- 298 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSS-CEEEE-----EEETTEEEEEETTSCEEEEETT-------------------
T ss_pred cccCCcceEeeccCCCeEEEEEccCccc-eEEEE-----cCCCCEEEEEeCCCeEEEEECC-------------------
Confidence 22223322 22333 3578899999999999999998
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
+.+.+..+.+|...|.+++|+|+++++++++.|+.|++||+.++ +.+. .+.+|...
T Consensus 299 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------~~~~--~~~~h~~~ 354 (464)
T 3v7d_B 299 --------------QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--------ELMY--TLQGHTAL 354 (464)
T ss_dssp --------------TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--------EEEE--EECCCSSC
T ss_pred --------------CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------cEEE--EEeCCCCc
Confidence 77888899999999999999999999999999999999999885 3443 77899999
Q ss_pred eEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 311 VWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 311 I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|.+++|++.+|++++.||+|++||+ +++...... +.. .+..+++++++++|++|+ ||.|++||+..
T Consensus 355 v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 355 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTN-LSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTT-CCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred EEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCC-CccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 9999999999999999999999999 555444442 333 578889999999999998 99999999954
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=302.32 Aligned_cols=328 Identities=11% Similarity=0.108 Sum_probs=250.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
..+++++|+ |+ +++|++|+ |+.|++||+.+++....+..+ . .+....|+ ++++ .+++++.|
T Consensus 57 ~~~~~~~~s--~~----g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~-~~~~~~~~-------~~~~---~l~~~~~d 118 (420)
T 3vl1_A 57 DAGKGNTFE--KV----GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-D-YTAVDTAK-------LQMR---RFILGTTE 118 (420)
T ss_dssp BCCTTCEEE--EE----ETTEEEEEETTEEEEEECCSEETTTTSCSC-C-EEEEEEEC-------SSSC---EEEEEETT
T ss_pred ccccceeee--ec----CCeEEEEEcCCcEEEEEecccceeeEEecC-C-ceEEEEEe-------cCCC---EEEEEECC
Confidence 345689999 99 88888887 899999999988776666554 2 34444666 6762 44555569
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.|++||+.. .+....+.+|.+.|.+++|+| ++++|++|+.|++|++||+.+++.+..+..+
T Consensus 119 g~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 119 GDIKVLDSNF---------------NLQREIDQAHVSEITKLKFFP---SGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp SCEEEECTTS---------------CEEEEETTSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred CCEEEEeCCC---------------cceeeecccccCccEEEEECC---CCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 9999999874 356677789999999999999 9999999999999999999999988888765
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC--
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-- 254 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 254 (1088)
.. .+.++++ ++++.+|++++.||.|++||+. +++.+..+..
T Consensus 181 ~~-~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~---------------------------------~~~~~~~~~~~~ 223 (420)
T 3vl1_A 181 RA-TVTDIAI---IDRGRNVLSASLDGTIRLWECG---------------------------------TGTTIHTFNRKE 223 (420)
T ss_dssp SS-CEEEEEE---ETTTTEEEEEETTSCEEEEETT---------------------------------TTEEEEEECBTT
T ss_pred CC-cEEEEEE---cCCCCEEEEEcCCCcEEEeECC---------------------------------CCceeEEeecCC
Confidence 44 4667776 5788999999999999999998 3444444442
Q ss_pred ----------------------CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 255 ----------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 255 ----------------------h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
|...+.+++|+|+++++++++.|+.|++||+.+++. +. ....+|...|.
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--------~~-~~~~~~~~~v~ 294 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ--------TI-QLPSKFTCSCN 294 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE--------EE-EECCTTSSCEE
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce--------eE-EcccccCCCce
Confidence 234555566689999999999999999999988532 22 14456889999
Q ss_pred EEEEC--CC-EEEEEeCCCcEEEEcC-CC-ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccC
Q 001391 313 DCCLT--DS-FIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLES 387 (1088)
Q Consensus 313 ~v~~~--~~-~l~sg~~Dg~i~vWd~-~~-~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~ 387 (1088)
+++|+ +. +|++|+.||.|++||+ ++ .++..+..|...+|.++.+ +++.+|++++.||.|++|++.......
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~--- 370 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESER--- 370 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCS---
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCc---
Confidence 99998 34 9999999999999999 44 4478888766657888855 577899999999999999995421000
Q ss_pred CccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe----EEEEecCCeEEEEEec
Q 001391 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT----LYIATNHGYLYHTKLC 448 (1088)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~----ll~~t~~g~i~~~~~~ 448 (1088)
.+.. .........+.+.|.+++|+|++. +++.+++|.+..|++.
T Consensus 371 -----------~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 371 -----------PAIE------FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp -----------CEEC------TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred -----------ccee------ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 0000 000112335567899999999887 8888899988866653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=282.29 Aligned_cols=279 Identities=13% Similarity=0.189 Sum_probs=233.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeE---EEEee-eCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLI---RPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~---~~~~~-~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|.++|++++|+ |+ +++|+++.++.|+|||+.+++.. ..+.. .+...|.+++|+ |+++ .++
T Consensus 50 h~~~v~~~~~~--~~----~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~---~l~ 113 (337)
T 1gxr_A 50 HGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-------PDGC---TLI 113 (337)
T ss_dssp CSSCCCEEEEC--SS----SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-------TTSS---EEE
T ss_pred CCCceEEEEEe--cC----CcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc-------CCCC---EEE
Confidence 67889999999 99 89999999999999999887533 33331 234479999999 7763 455
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
+++.|+.|++|++.... ......+.+|...|.+++|+| ++++|++++.|+.|++||+.+++.+.
T Consensus 114 ~~~~d~~i~~~d~~~~~-------------~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp EEESSSEEEEEECCCC---------------EEEEEEECSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEcCCCcEEEEECCCCC-------------cceeeecccCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceee
Confidence 55669999999998543 346677888999999999999 99999999999999999999999888
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
.+..+.. .+.++.+ ++++..|++++.||.|++||+. ..+.+..
T Consensus 178 ~~~~~~~-~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~---------------------------------~~~~~~~ 220 (337)
T 1gxr_A 178 QFQGHTD-GASCIDI---SNDGTKLWTGGLDNTVRSWDLR---------------------------------EGRQLQQ 220 (337)
T ss_dssp EECCCSS-CEEEEEE---CTTSSEEEEEETTSEEEEEETT---------------------------------TTEEEEE
T ss_pred eeecccC-ceEEEEE---CCCCCEEEEEecCCcEEEEECC---------------------------------CCceEee
Confidence 8876544 3566666 6788999999999999999998 4555555
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
+ .|...+.+++|+|+++++++++.|+.|++||+.+.+. ..+..|...|.+++|+ +.+|++++.||.
T Consensus 221 ~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 221 H-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred e-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----------EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 4 4788999999999999999999999999999988532 2677899999999998 689999999999
Q ss_pred EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++|++ .++.+.. ..|.. .|.+++|+|++++|++++.||.|++|++
T Consensus 289 i~~~~~~~~~~~~~-~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 289 LNAWRTPYGASIFQ-SKESS-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTTCCEEEE-EECSS-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEECCCCeEEEE-ecCCC-cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999 5665544 34666 6999999999999999999999999996
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=297.41 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=244.4
Q ss_pred CCCCCceEEec----CCCc-----------------------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC
Q 001391 1 MGKKDLSEWRL----DVGQ-----------------------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE 52 (1088)
Q Consensus 1 ~~d~~i~iWdl----~~g~-----------------------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~ 52 (1088)
+.|+.|++||+ .+++ |.++|++++|+ |+ +++|++|+ ++.|+||| .
T Consensus 65 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~l~~~~~dg~i~i~~-~ 137 (425)
T 1r5m_A 65 EKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS--HD----GNSIVTGVENGELRLWN-K 137 (425)
T ss_dssp ETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC--TT----SSEEEEEETTSCEEEEE-T
T ss_pred cCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc--CC----CCEEEEEeCCCeEEEEe-C
Confidence 35889999999 7776 45689999999 99 89999988 79999999 7
Q ss_pred CCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC
Q 001391 53 AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS 132 (1088)
Q Consensus 53 tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 132 (1088)
+++.+..+..|.. .|.+++|+ |+++ .+++++.|+.|++|++.. .+.+..+..|.
T Consensus 138 ~~~~~~~~~~~~~-~v~~~~~~-------~~~~---~l~~~~~d~~i~iwd~~~---------------~~~~~~~~~~~ 191 (425)
T 1r5m_A 138 TGALLNVLNFHRA-PIVSVKWN-------KDGT---HIISMDVENVTILWNVIS---------------GTVMQHFELKE 191 (425)
T ss_dssp TSCEEEEECCCCS-CEEEEEEC-------TTSS---EEEEEETTCCEEEEETTT---------------TEEEEEECCC-
T ss_pred CCCeeeeccCCCc-cEEEEEEC-------CCCC---EEEEEecCCeEEEEECCC---------------CcEEEEeeccc
Confidence 7888888888666 79999999 7763 555666699999999974 34555566666
Q ss_pred Cc---------------EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 133 HW---------------VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 133 ~~---------------I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.. |.+++|+| ++ .+++++.|+.|++||+.+++.+..+..+.. .+.++++ ++++.+|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~---~~~~~~l~ 263 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVD---DD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG-PISVLEF---NDTNKLLL 263 (425)
T ss_dssp --------------CCCBSCCEEEE---TT-EEEEECGGGCEEEEETTCSSCSEEECCCSS-CEEEEEE---ETTTTEEE
T ss_pred cCccceeeccccCCcceeeEEEEcC---CC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC-ceEEEEE---CCCCCEEE
Confidence 55 99999998 65 588899999999999999988887765543 3566666 56788999
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
+++.||.|++||+. ....+..+.+|...|.+++|+|++ ++++++.|
T Consensus 264 ~~~~d~~i~i~d~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 309 (425)
T 1r5m_A 264 SASDDGTLRIWHGG---------------------------------NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMD 309 (425)
T ss_dssp EEETTSCEEEECSS---------------------------------SBSCSEEECCCSSCEEEEEEETTT-EEEEEETT
T ss_pred EEcCCCEEEEEECC---------------------------------CCccceEecCCCccEEEEEECCCC-EEEEEeCC
Confidence 99999999999998 667778888999999999999999 99999999
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCc----------------
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK---------------- 338 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~---------------- 338 (1088)
+.|++||+.++ +.+. .+..|...|.+++|+ +.+|++++.||.|++|++ .++
T Consensus 310 ~~i~i~d~~~~--------~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (425)
T 1r5m_A 310 GSVRLWSLKQN--------TLLA--LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP 379 (425)
T ss_dssp SEEEEEETTTT--------EEEE--EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred CcEEEEECCCC--------cEeE--ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence 99999999885 3343 677899999999998 689999999999999999 556
Q ss_pred ----eeEEEcccCCC-CeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 339 ----QLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 339 ----~~~~~~~h~~~-~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+..+..|... +|.+++|+|++++|++++.||.|++|+++
T Consensus 380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 78888888653 69999999999999999999999999985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=309.23 Aligned_cols=306 Identities=13% Similarity=0.154 Sum_probs=244.2
Q ss_pred CCCCCceEEecCCCc---------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC----CeeEEEEeeeCCc
Q 001391 1 MGKKDLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----GTLIRPFQVFHGI 66 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~---------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t----g~~~~~~~~~~~~ 66 (1088)
+.|+.|++||+.++. |.++|++++|+ |+ +++|++|+ |+.|+|||+.+ .+.+..+..|..
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~- 114 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HN----NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS- 114 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC--SS----SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEEC--CC----CCeEEEEccCCeEEEeecccccccccchhhccCCcc-
Confidence 368899999998774 56789999999 99 88999987 79999999987 357778887666
Q ss_pred ceEEEEecccccccCCC-ccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 67 RLHGISCNFINCTEGSV-STRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d-~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
.|.+++|+ |+ + .++++ +.|+.|++||+.........+ .......+.+|...|.+++|+|
T Consensus 115 ~v~~~~~~-------~~~~----~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~-- 175 (416)
T 2pm9_A 115 SVKTVKFN-------AKQD----NVLASGGNNGEIFIWDMNKCTESPSNY------TPLTPGQSMSSVDEVISLAWNQ-- 175 (416)
T ss_dssp CCCEEEEC-------SSST----TBEEEECSSSCEEBCBTTTTSSCTTTC------CCBCCCCSCCSSCCCCEEEECS--
T ss_pred ceEEEEEc-------CCCC----CEEEEEcCCCeEEEEECCCCccccccc------cccccccccCCCCCeeEEEeCC--
Confidence 79999999 65 4 45555 458999999998643110000 0112234568999999999999
Q ss_pred CC-CCEEEEEEcCCcEEEEEcCCCceEEEeccCC-----ceeEEEEeeecCCCCC-cEEEEEecCC---eEEEEEeccCc
Q 001391 145 NG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPE-----RCLLYSMKLWGDNLEA-LRIASGTIYN---EIIVWKVDWEH 214 (1088)
Q Consensus 145 ~d-~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-----~~~~~s~~~~~~s~~~-~~l~sg~~dg---~I~vwd~~~~~ 214 (1088)
+ +.+|++++.|+.|++||+.+++.+..+..+. ...+.++++ ++++ .++++++.|+ .|++||+++
T Consensus 176 -~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~d~~~~~i~~~d~~~-- 249 (416)
T 2pm9_A 176 -SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW---HPKNSTRVATATGSDNDPSILIWDLRN-- 249 (416)
T ss_dssp -SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE---CSSCTTEEEEEECCSSSCCCCEEETTS--
T ss_pred -CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE---CCCCCCEEEEEECCCCCceEEEEeCCC--
Confidence 7 7899999999999999999999888887653 455777777 5665 6899999998 999999981
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
...++..+. +|...|.+++|+| ++++|++++.|+.|++||+.++
T Consensus 250 ------------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---- 295 (416)
T 2pm9_A 250 ------------------------------ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---- 295 (416)
T ss_dssp ------------------------------TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC----
T ss_pred ------------------------------CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC----
Confidence 124455666 8999999999999 9999999999999999999885
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--C-CEEEEEeCCCcEEEEcC-CCceeEEE-------------------------
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--D-SFIITAGEDCTCRVWGS-DGKQLKMI------------------------- 343 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~-~~l~sg~~Dg~i~vWd~-~~~~~~~~------------------------- 343 (1088)
+.+. .+.+|...|.+++|+ + .+|++++.|+.|++|++ .++.....
T Consensus 296 ----~~~~--~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 296 ----EQLS--QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp ----CEEE--EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred ----ccce--eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence 3443 778899999999998 3 79999999999999999 33221111
Q ss_pred ----------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 344 ----------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 344 ----------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..|.. ++.+++|+|+|++|++++.|+.|++|++..
T Consensus 370 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGE-PSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCSSCCCCCSTTCC-CSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCccccC-CccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 01344 688999999999999999999999999853
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=295.22 Aligned_cols=299 Identities=11% Similarity=0.085 Sum_probs=241.5
Q ss_pred CCCCceEEecCCCce------eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 2 GKKDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~------~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.|+.|++||+.+++. ...+....|+ |+ +++|++|+ ++.|+|||+.+++++..+..|.+ .|.+++|+
T Consensus 76 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~ 148 (420)
T 3vl1_A 76 LDGHDFLFNTIIRDGSKMLKRADYTAVDTAK--LQ----MRRFILGTTEGDIKVLDSNFNLQREIDQAHVS-EITKLKFF 148 (420)
T ss_dssp ETTEEEEEECCSEETTTTSCSCCEEEEEEEC--SS----SCEEEEEETTSCEEEECTTSCEEEEETTSSSS-CEEEEEEC
T ss_pred cCCcEEEEEecccceeeEEecCCceEEEEEe--cC----CCEEEEEECCCCEEEEeCCCcceeeecccccC-ccEEEEEC
Confidence 588999999998762 1334455678 88 88999988 79999999999998887777666 79999999
Q ss_pred ccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
|+++ .+++++.|++|++||+.. .+.+..+.+|...|.+++|+| ++++|++|+
T Consensus 149 -------~~~~---~l~s~s~d~~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~ 200 (420)
T 3vl1_A 149 -------PSGE---ALISSSQDMQLKIWSVKD---------------GSNPRTLIGHRATVTDIAIID---RGRNVLSAS 200 (420)
T ss_dssp -------TTSS---EEEEEETTSEEEEEETTT---------------CCCCEEEECCSSCEEEEEEET---TTTEEEEEE
T ss_pred -------CCCC---EEEEEeCCCeEEEEeCCC---------------CcCceEEcCCCCcEEEEEEcC---CCCEEEEEc
Confidence 7763 555556699999999985 345667789999999999999 999999999
Q ss_pred cCCcEEEEEcCCCceEEEeccCC--ceeEEEEee------------------ecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 155 SDNSIRVWDISNSSIILEVHSPE--RCLLYSMKL------------------WGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~s~~~------------------~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
.|++|++||+.+++.+..+..+. ...+.++.+ ..+++++.+|++|+.||.|++||+.
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--- 277 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF--- 277 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT---
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC---
Confidence 99999999999999888876432 223444443 2246789999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
....+..+ .+|...|.+++|+|+++ ++++++.|+.|++||+.+++.
T Consensus 278 ------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-- 325 (420)
T 3vl1_A 278 ------------------------------SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-- 325 (420)
T ss_dssp ------------------------------TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--
T ss_pred ------------------------------CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--
Confidence 44444444 46899999999999998 999999999999999988532
Q ss_pred CCCceeeeceeeec-cCcceEEEEEC-CCEEEEEeCCCcEEEEcCCC----------ceeEEEcccCCCCeEEEEEcCCC
Q 001391 293 SDSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGSDG----------KQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~-h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~----------~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
.+. .+.+ |...|.++.+. +.+|++++.|++|++|++.. .....+..|.+ .|.+++|+|++
T Consensus 326 -----~~~--~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~ 397 (420)
T 3vl1_A 326 -----PVG--EFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD-AVSQFCYVSDD 397 (420)
T ss_dssp -----CSE--EEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC-CCCEEEEECCS
T ss_pred -----chh--hhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc-ceEEEEEccCC
Confidence 222 4444 77789999887 67999999999999999832 22334566777 69999999999
Q ss_pred C---EEEEEeCCCCEEEEEcC
Q 001391 361 S---LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 361 ~---~l~tg~~Dg~I~iwd~~ 378 (1088)
. .|++.+.+|.+.+|+++
T Consensus 398 ~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 398 ESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SSSCEEEEEETTTEEEEEESC
T ss_pred CCcceEEEEcCCceEEEEecc
Confidence 9 78888899999999985
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=294.36 Aligned_cols=286 Identities=19% Similarity=0.349 Sum_probs=247.2
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.||+|++||+.+++ |.++|.+++|+ +.+|++|+ |++|++||+.+++.+..+..|.. .|.+++
T Consensus 136 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~ 206 (445)
T 2ovr_B 136 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--------DNIIISGSTDRTLKVWNAETGECIHTLYGHTS-TVRCMH 206 (445)
T ss_dssp ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEE
T ss_pred ECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--------CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC-cEEEEE
Confidence 468999999999887 67889999999 45888877 79999999999999999998776 799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
++ ++ .+++++.|++|++||+.. .+.+..+.+|...|.+++| +++++++
T Consensus 207 ~~-------~~-----~l~s~s~dg~i~~wd~~~---------------~~~~~~~~~~~~~v~~~~~-----~~~~l~~ 254 (445)
T 2ovr_B 207 LH-------EK-----RVVSGSRDATLRVWDIET---------------GQCLHVLMGHVAAVRCVQY-----DGRRVVS 254 (445)
T ss_dssp EE-------TT-----EEEEEETTSEEEEEESSS---------------CCEEEEEECCSSCEEEEEE-----CSSCEEE
T ss_pred ec-------CC-----EEEEEeCCCEEEEEECCC---------------CcEEEEEcCCcccEEEEEE-----CCCEEEE
Confidence 97 43 677777799999999985 3567778899999999998 5678999
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++..+++|+.||.|++||+.
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~-----~~~~l~~~~~d~~i~i~d~~--------------------- 307 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF-----DGIHVVSGSLDTSIRVWDVE--------------------- 307 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE-----CSSEEEEEETTSCEEEEETT---------------------
T ss_pred EcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE-----CCCEEEEEeCCCeEEEEECC---------------------
Confidence 99999999999999999988876654 4556665 67899999999999999998
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec---cCc
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG---HNA 309 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~---h~~ 309 (1088)
+++.+..+.+|...+.++.++ ++++++++.|+.|++||+.+++ .+. .+.+ |..
T Consensus 308 ------------~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--------~~~--~~~~~~~~~~ 363 (445)
T 2ovr_B 308 ------------TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ--------CLQ--TLQGPNKHQS 363 (445)
T ss_dssp ------------TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC--------EEE--EECSTTSCSS
T ss_pred ------------CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCc--------EEE--EEccCCCCCC
Confidence 677888899999999998874 6799999999999999998753 332 3443 889
Q ss_pred ceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEE-----cccCCCCeEEEEEcCCCCEEEEEeCCCC----EEEEEcCC
Q 001391 310 RVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI-----KEHIGRGIWRCLYDSLSSLLVTAGFDSA----IKVHQFQA 379 (1088)
Q Consensus 310 ~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~-----~~h~~~~V~~l~~~~dg~~l~tg~~Dg~----I~iwd~~~ 379 (1088)
.|.+++|++.+|++|+.||.|++||+ +++.+..+ ..|.+ .|++++|+|++.++++|+.||+ +.+||++.
T Consensus 364 ~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 364 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG-VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC-EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc-eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999999999999999 78888877 45666 7999999999999999999998 99999854
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=303.15 Aligned_cols=349 Identities=16% Similarity=0.241 Sum_probs=255.4
Q ss_pred eeeeeEEEEEeccCCCCCCCC-EEEEE----------e-CCeEEEEECCCCe---eEEEEeeeCCcceEEEEeccccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLP-FLLAG----------S-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~-~laag----------~-d~~I~vwd~~tg~---~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
+..+|.+++|+ |+ ++ +|++| + |+.|+|||+.+++ .+..+. +. ..|.+++|+
T Consensus 11 ~~~~v~~~~~s--p~----g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~-~~v~~~~~s------ 76 (416)
T 2pm9_A 11 EFSRTATFAWS--HD----KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VD-SKFNDLDWS------ 76 (416)
T ss_dssp EEEESCBCCBC--SS----SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CS-SCEEEEEEC------
T ss_pred hhhhcceEeeC--CC----CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cC-CceEEEEEC------
Confidence 35689999999 98 65 89988 5 6899999999875 444443 33 479999999
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V 159 (1088)
|+++ .+++++.|+.|++|++..... ..+.+..+.+|...|.+++|+| + +.+|++++.|+.|
T Consensus 77 -~~~~---~l~~~~~dg~v~vw~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 77 -HNNK---IIAGALDNGSLELYSTNEANN-----------AINSMARFSNHSSSVKTVKFNA---KQDNVLASGGNNGEI 138 (416)
T ss_dssp -SSSS---CEEEEESSSCEEEECCSSTTS-----------CCCEEEECCCSSSCCCEEEECS---SSTTBEEEECSSSCE
T ss_pred -CCCC---eEEEEccCCeEEEeecccccc-----------cccchhhccCCccceEEEEEcC---CCCCEEEEEcCCCeE
Confidence 7773 455556699999999985220 0246778889999999999999 7 8899999999999
Q ss_pred EEEEcCCCc------eEEEe--ccCCceeEEEEeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 160 RVWDISNSS------IILEV--HSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 160 ~iWd~~~~~------~~~~~--~~~~~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
++||+.+++ ....+ .......+.++++ +++ +.++++++.||.|++||+.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~v~iwd~~------------------- 196 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW---NQSLAHVFASAGSSNFASIWDLK------------------- 196 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE---CSSCTTEEEEESSSSCEEEEETT-------------------
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEe---CCCCCcEEEEEcCCCCEEEEECC-------------------
Confidence 999999876 33222 1122334556666 466 7899999999999999998
Q ss_pred CCCCceeEecccccceeeeEEEeCC------CCCEEEEEEcCCC-CEEEEEECCC---cEEEEEcCCCcccCCCCceeee
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCG-SKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh------~~~V~~v~~sp~g-~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
..+.+..+..| ...|.+++|+|++ .++++++.|+ .|++||+.+.. ..+.
T Consensus 197 --------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-------~~~~ 255 (416)
T 2pm9_A 197 --------------AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-------TPLQ 255 (416)
T ss_dssp --------------TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------SCSB
T ss_pred --------------CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------CCcE
Confidence 55666666665 8899999999997 6899999999 99999998852 1222
Q ss_pred ceeee-ccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEE
Q 001391 301 SSVLY-GHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKV 374 (1088)
Q Consensus 301 ~~~~~-~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~i 374 (1088)
.+. +|...|.+++|+ +.+|++++.||+|++||+ +++++..+..|.. .|++++|+|++ .+|++++.||.|++
T Consensus 256 --~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 256 --TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp --CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred --EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEE
Confidence 555 899999999997 579999999999999999 7889999999988 79999999999 89999999999999
Q ss_pred EEcCCCC-CCcccCCccccccCCCcceEEeee-----CC-CccceeeccCCCCceEEEEeccCCeEEEEec-CCeEE
Q 001391 375 HQFQAFL-PGSLESHPEAKEFNGRTEIFSIKI-----PN-FSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLY 443 (1088)
Q Consensus 375 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~-~g~i~ 443 (1088)
|++.... .......... .......++.... +. ..........+...+.+++|+|+|++++.+. ++.+.
T Consensus 333 w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~ 408 (416)
T 2pm9_A 333 QTLQNLTNTLDEQETETK-QQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVS 408 (416)
T ss_dssp EESCCCCCSSCC-----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred EEccCCCCCccccccccc-ccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEE
Confidence 9995432 2211110000 0000000010000 00 0000111122456788999999998888765 56566
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=286.86 Aligned_cols=309 Identities=18% Similarity=0.315 Sum_probs=253.2
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
++|+.++ +++|++|+ |++|+|||+.+++++..+.+|.+ .|.+++|+ ++ .+++++.|++
T Consensus 122 ~~~~~~~--------g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~-------~~-----~l~s~~~dg~ 180 (445)
T 2ovr_B 122 ITCLQFC--------GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQMR-------DN-----IIISGSTDRT 180 (445)
T ss_dssp EEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEECCCCSS-CEEEEEEE-------TT-----EEEEEETTSC
T ss_pred EEEEEEc--------CCEEEEEECCCcEEEEECCCCcEEEEEcCCCC-CEEEEEec-------CC-----EEEEEeCCCe
Confidence 5777766 67899888 79999999999999999998776 79999998 33 6666777999
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~ 178 (1088)
|++||+.. .+.+..+.+|...|.+++|++ +.|++|+.|++|++||+.+++.+..+..+..
T Consensus 181 i~vwd~~~---------------~~~~~~~~~h~~~v~~~~~~~-----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 240 (445)
T 2ovr_B 181 LKVWNAET---------------GECIHTLYGHTSTVRCMHLHE-----KRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240 (445)
T ss_dssp EEEEETTT---------------TEEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred EEEEECCc---------------CcEEEEECCCCCcEEEEEecC-----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence 99999975 456788889999999999954 6799999999999999999999888876654
Q ss_pred eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC
Q 001391 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 258 (1088)
.+.++.+ ++..+++|+.||.|++||+. +...+..+.+|...
T Consensus 241 -~v~~~~~-----~~~~l~~~~~dg~i~iwd~~---------------------------------~~~~~~~~~~~~~~ 281 (445)
T 2ovr_B 241 -AVRCVQY-----DGRRVVSGAYDFMVKVWDPE---------------------------------TETCLHTLQGHTNR 281 (445)
T ss_dssp -CEEEEEE-----CSSCEEEEETTSCEEEEEGG---------------------------------GTEEEEEECCCSSC
T ss_pred -cEEEEEE-----CCCEEEEEcCCCEEEEEECC---------------------------------CCcEeEEecCCCCc
Confidence 3455554 57889999999999999998 67788889999999
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CC
Q 001391 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DG 337 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~ 337 (1088)
|.++.| ++.++++++.|+.|++||+.++ +.+. .+.+|...+.++.+.+.++++|+.||.|++||+ ++
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~--------~~~~--~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETG--------NCIH--TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTC--------CEEE--EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCC--------CEEE--EEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence 999999 8899999999999999999885 3343 678899999999999999999999999999999 78
Q ss_pred ceeEEEcc---cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceee
Q 001391 338 KQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRL 414 (1088)
Q Consensus 338 ~~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1088)
+.+..+.. |.. +|.+++++ +++|++|+.||.|++||+..... +..+... .
T Consensus 350 ~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~-----------------~~~~~~~-------~ 402 (445)
T 2ovr_B 350 QCLQTLQGPNKHQS-AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF-----------------IRNLVTL-------E 402 (445)
T ss_dssp CEEEEECSTTSCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE-----------------EEEEEEC-------T
T ss_pred cEEEEEccCCCCCC-CEEEEEEC--CCEEEEEeCCCeEEEEECCCCce-----------------eeeeecc-------c
Confidence 88888876 666 79999995 57999999999999999953210 1111000 0
Q ss_pred ccCCCCceEEEEeccCCeEEEE-ecCCe----EEEEEe
Q 001391 415 TDSKSEYVRCLHLTSEDTLYIA-TNHGY----LYHTKL 447 (1088)
Q Consensus 415 ~~~~~~~V~~l~~s~~~~ll~~-t~~g~----i~~~~~ 447 (1088)
...+.+.|.+++|+|++.++++ +.+|. +..+++
T Consensus 403 ~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 403 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred cCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 1234568999999999877655 45564 665444
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=283.14 Aligned_cols=280 Identities=16% Similarity=0.180 Sum_probs=236.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ |+.|+|||+.+++.+..+..|.. .|.+++|+ |+++ .+++++
T Consensus 31 h~~~v~~~~~s--~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~s~~ 93 (369)
T 3zwl_B 31 HERPLTQVKYN--KE----GDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-TIWSIDVD-------CFTK---YCVTGS 93 (369)
T ss_dssp CSSCEEEEEEC--TT----SCEEEEEESSSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred eeceEEEEEEc--CC----CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-cEEEEEEc-------CCCC---EEEEEe
Confidence 66889999999 99 89999988 79999999999999999998776 79999999 7763 555556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC-----CcEEEEEcCCCce
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD-----NSIRVWDISNSSI 169 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D-----g~V~iWd~~~~~~ 169 (1088)
.|+.|++||+... +.+..+. |...|.+++|+| ++++|++++.+ +.|++||+.....
T Consensus 94 ~dg~i~iwd~~~~---------------~~~~~~~-~~~~v~~~~~~~---~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 94 ADYSIKLWDVSNG---------------QCVATWK-SPVPVKRVEFSP---CGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp TTTEEEEEETTTC---------------CEEEEEE-CSSCEEEEEECT---TSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred CCCeEEEEECCCC---------------cEEEEee-cCCCeEEEEEcc---CCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 6999999999853 3455555 888999999999 99999999998 9999999976543
Q ss_pred E-----------EEeccCCc-eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 170 I-----------LEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 170 ~-----------~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
. ..+..+.. ..+.++++ ++++..|++++.||.|++||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~i~d~~-------------------------- 205 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGW---STKGKYIIAGHKDGKISKYDVS-------------------------- 205 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEE---CGGGCEEEEEETTSEEEEEETT--------------------------
T ss_pred ceeecccccceeeeccCCcCccceeEEEE---cCCCCEEEEEcCCCEEEEEECC--------------------------
Confidence 1 11221111 14555555 6789999999999999999998
Q ss_pred Eecccccc-eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE
Q 001391 238 KLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (1088)
Q Consensus 238 ~~~~~~~~-~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~ 316 (1088)
. ...+..+.+|...|.+++|+|++++|++++.|+.|++||+.+.+. + ....+...+.+++|
T Consensus 206 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------~---~~~~~~~~~~~~~~ 267 (369)
T 3zwl_B 206 -------NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV--------L---KKYETDCPLNTAVI 267 (369)
T ss_dssp -------TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------E---EEEECSSCEEEEEE
T ss_pred -------CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce--------e---eeecCCCCceeEEe
Confidence 4 577888899999999999999999999999999999999988533 2 22337788999999
Q ss_pred C--CCEEEEEeCCC--------------cEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 317 T--DSFIITAGEDC--------------TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 317 ~--~~~l~sg~~Dg--------------~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ +.++++++.++ .+++||. .++.+..+.+|.. .|.+++|+|++++|++++.||.|++|+++.
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 8 68999999888 8999999 8889999999988 799999999999999999999999999964
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=278.43 Aligned_cols=296 Identities=15% Similarity=0.205 Sum_probs=234.6
Q ss_pred cceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCCCc-----eEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~-----~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
+++..+|+||.+.|++|+|+| + +++|+||+.|++|++||+.+.+ ....+.++.. .+.++.+ ++++.+
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp---~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~-~V~~~~~---s~dg~~ 100 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTP---QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH-FVSDVVI---SSDGQF 100 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECT---TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS-CEEEEEE---CTTSSE
T ss_pred eEEEEEECCccCCEEEEEEeC---CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC-CEEEEEE---CCCCCE
Confidence 667788999999999999999 6 5799999999999999997654 2444555443 4666766 688999
Q ss_pred EEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
|++|+.|+.|++|+.. ..........+...+..+.+++++.++++++
T Consensus 101 l~s~~~d~~i~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 147 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLT---------------------------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147 (340)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEcccccceEEeec---------------------------------ccceeeeecCCCCceeEEEEeecCccceeec
Confidence 9999999999999998 5666777788999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCC
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~ 350 (1088)
.|+.+++||..... ... ....+|...+..++|+ ..++++++.|++|++||+ .++.+..+.+|.+ +
T Consensus 148 ~d~~~~~~d~~~~~--------~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~ 217 (340)
T 4aow_A 148 RDKTIKLWNTLGVC--------KYT-VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-Y 217 (340)
T ss_dssp TTSCEEEECTTSCE--------EEE-ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-C
T ss_pred CCCeEEEEEeCCCc--------eEE-EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-c
Confidence 99999999987642 222 2667899999999997 357899999999999999 7788889999998 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
|.+++|+|++++|++|+.||.|++||+.... .+..+ . +...|.+++|+|+
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-----------------~~~~~------------~-~~~~v~~~~~~~~ 267 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-----------------HLYTL------------D-GGDIINALCFSPN 267 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------------EEEEE------------E-CSSCEEEEEECSS
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEeccCc-----------------eeeee------------c-CCceEEeeecCCC
Confidence 9999999999999999999999999995421 11111 1 1246899999999
Q ss_pred CeEEEEecCCeEEEEEeccCCcce-----eEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 431 DTLYIATNHGYLYHTKLCDMDSVN-----WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 431 ~~ll~~t~~g~i~~~~~~~~~~~~-----~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
+.+++++.++.+..|++....... ........+...|.++++.++ +++|++|+.||.|++|++.++.
T Consensus 268 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--------g~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD--------GQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT--------SSEEEEEETTSCEEEEEEEC--
T ss_pred CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC--------CCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999866654321110 000011123567888888554 4899999999999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=285.80 Aligned_cols=299 Identities=20% Similarity=0.297 Sum_probs=229.3
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc-----------------eeEEEEeeecCCCC
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER-----------------CLLYSMKLWGDNLE 192 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~-----------------~~~~s~~~~~~s~~ 192 (1088)
+|.+.|.+++|+| +|++||+|+ ++++++|++.+++.+..+..+.. ..+.+++| +++
T Consensus 62 ~h~~~V~~v~fsp---dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---s~d 134 (393)
T 1erj_A 62 DHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF---SPD 134 (393)
T ss_dssp ECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE---CTT
T ss_pred CCCCEEEEEEECC---CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE---CCC
Confidence 6999999999999 999999986 78999999999988877754321 12556666 789
Q ss_pred CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEE
Q 001391 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (1088)
Q Consensus 193 ~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~ 272 (1088)
+.+|++|+.|+.|++||+. +.+.+..+.+|...|.+++|+|++++|+
T Consensus 135 g~~l~s~~~d~~i~iwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 181 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIE---------------------------------NRKIVMILQGHEQDIYSLDYFPSGDKLV 181 (393)
T ss_dssp SSEEEEEETTSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEcCCCeEEEEECC---------------------------------CCcEEEEEccCCCCEEEEEEcCCCCEEE
Confidence 9999999999999999998 6777888999999999999999999999
Q ss_pred EEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEE-----
Q 001391 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI----- 343 (1088)
Q Consensus 273 s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~----- 343 (1088)
+++.|++|++||+.+++. . ....+...+.+++|+ +.+|++|+.|++|++||+ +++.+..+
T Consensus 182 s~s~d~~v~iwd~~~~~~--------~---~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~ 250 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTGQC--------S---LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250 (393)
T ss_dssp EEETTSEEEEEETTTTEE--------E---EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred EecCCCcEEEEECCCCee--------E---EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc
Confidence 999999999999988533 2 223456779999997 479999999999999999 67766666
Q ss_pred --cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCc
Q 001391 344 --KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEY 421 (1088)
Q Consensus 344 --~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (1088)
.+|.. .|++++|+|++++|++|+.|++|++||+....... ....+........+.+|...
T Consensus 251 ~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~-----------------~~~~~~~~~~~~~~~~h~~~ 312 (393)
T 1erj_A 251 SGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-----------------DSKTPNSGTCEVTYIGHKDF 312 (393)
T ss_dssp --CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--------------------------------CEEEEEECCSSC
T ss_pred CCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc-----------------cccCCCCCcceEEEecccCc
Confidence 56777 79999999999999999999999999995421100 00001111223345567788
Q ss_pred eEEEEeccCCeEE-EEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 422 VRCLHLTSEDTLY-IATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 422 V~~l~~s~~~~ll-~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
|.+++|++++.++ .++.++.+..|++ ...+....+.+| ...+.++++.+... ..++++++++|+.||.|++|+
T Consensus 313 v~~~~~~~~~~~l~sgs~D~~v~iwd~---~~~~~~~~l~~h-~~~v~~v~~~~~~~--~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 313 VLSVATTQNDEYILSGSKDRGVLFWDK---KSGNPLLMLQGH-RNSVISVAVANGSS--LGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEET---TTCCEEEEEECC-SSCEEEEEECSSCT--TCTTCEEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEC---CCCeEEEEECCC-CCCEEEEEecCCcC--cCCCCCEEEEECCCCcEEECc
Confidence 9999999988654 5567888885554 333333444555 56788888765320 024568999999999999999
Q ss_pred EcC
Q 001391 501 VVG 503 (1088)
Q Consensus 501 ~~~ 503 (1088)
+..
T Consensus 387 ~~~ 389 (393)
T 1erj_A 387 YKK 389 (393)
T ss_dssp EEE
T ss_pred ccc
Confidence 864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-31 Score=312.65 Aligned_cols=305 Identities=11% Similarity=0.031 Sum_probs=216.3
Q ss_pred CCCCCceEEecCCCc-----------eeeeeEEEEEeccCCC-C-CCCCEEEEEe-CCeEEEEECCCCee----------
Q 001391 1 MGKKDLSEWRLDVGQ-----------YLGEISALCFVHLPSH-L-SSLPFLLAGS-GSQVLLYDLEAGTL---------- 56 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-----------~~~~V~~v~fs~~pd~-~-~~~~~laag~-d~~I~vwd~~tg~~---------- 56 (1088)
|.|++|+|||+.+++ |.+.|.+|+|+ |+. . +.+.+||+|+ |++|+|||+.+++.
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~ws--p~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWH--EGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEEC--SSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEEC--CCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 468999999997764 24679999999 851 0 1247899888 79999999987642
Q ss_pred -EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE
Q 001391 57 -IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (1088)
Q Consensus 57 -~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I 135 (1088)
...+.+|.. .|.+++|+ +++ .+++++.|++|++||++... .+...+.+|.+.|
T Consensus 258 p~~~l~~h~~-~v~sv~~s-------~~~----~lasgs~DgtV~lWD~~~~~--------------~~~~~~~~H~~~V 311 (524)
T 2j04_B 258 PSLTLSLADS-LITTFDFL-------SPT----TVVCGFKNGFVAEFDLTDPE--------------VPSFYDQVHDSYI 311 (524)
T ss_dssp CSEEECCTTT-CEEEEEES-------SSS----EEEEEETTSEEEEEETTBCS--------------SCSEEEECSSSCE
T ss_pred ceEEEEcCCC-CEEEEEec-------CCC----eEEEEeCCCEEEEEECCCCC--------------CceEEeecccccE
Confidence 235666555 79999998 554 66666779999999998532 2345577999999
Q ss_pred EEE--EEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEeccCCc-eeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 136 FDV--CFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 136 ~~v--~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
.+| +|+| ++ .+||||+.|++|+|||+.+++....+..+.. ..++++++ +|++..+++++.|++|++||++
T Consensus 312 ~sv~~~~s~---~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f---sp~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 312 LSVSTAYSD---FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY---CPQIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp EEEEEECCT---TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE---ETTTTEEEEECSSSEEEEEETT
T ss_pred EEEEEEcCC---CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe---CCCcCeEEEeCCCCcEEEEECc
Confidence 999 5677 77 8999999999999999998776555443322 12345555 5778899999999999999998
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
....+..+.+|.+.|.+|+|+|++++|++|+.|++|++||+..+..
T Consensus 386 ---------------------------------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~- 431 (524)
T 2j04_B 386 ---------------------------------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL- 431 (524)
T ss_dssp ---------------------------------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-
T ss_pred ---------------------------------ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-
Confidence 5556677889999999999999999999999999999999865311
Q ss_pred CCCCceeeeceeeeccCcceEEEEECC-CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCC---EEEEEe
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS---LLVTAG 367 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~---~l~tg~ 367 (1088)
..........+...|++++|++ ..++....+-.+..|+.++..+..+.+|.. +|++++|+|++. .|++|+
T Consensus 432 -----~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~-~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 432 -----HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI-NITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp -----TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC-SCCCEEECCSTTTTTEEEEEC
T ss_pred -----cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc-eEEEEECCCCCCccHHHHhhc
Confidence 1000000011223578888882 223333333233333345788888999998 799999999964 999999
Q ss_pred CCCCEEEEEcCC
Q 001391 368 FDSAIKVHQFQA 379 (1088)
Q Consensus 368 ~Dg~I~iwd~~~ 379 (1088)
.||.|+||++..
T Consensus 506 ~~g~vrlw~l~~ 517 (524)
T 2j04_B 506 SAGLLTLEYLSL 517 (524)
T ss_dssp TTSEEEEEECSC
T ss_pred cCceEEEEEccc
Confidence 999999999965
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=292.06 Aligned_cols=330 Identities=17% Similarity=0.233 Sum_probs=250.1
Q ss_pred eeeeccCCCCcE-EEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 124 LVQSLPRLSHWV-FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 124 ~~~~l~~h~~~I-~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+..+.. .+.++++ ++++ .+++|+.|
T Consensus 113 ~~~~l~~h~~~v~~~~~~-----~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~---~~~~-~l~s~s~d 182 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKY---AHGG-ILVSGSTD 182 (464)
T ss_dssp EEEEEECCSSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE---CSTT-EEEEEETT
T ss_pred ceEEEcCCCCCcEEEEEE-----CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc-CEEEEEE---cCCC-EEEEEeCC
Confidence 456788999875 66555 557999999999999999999999998886655 4667776 4555 99999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc--CCCCEEEEEECCCcE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRSA 280 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s--p~g~~l~s~s~Dg~v 280 (1088)
|+|++||+. ++..+..+.+|.+.|.+++|+ +++.++++++.|+.|
T Consensus 183 g~i~vwd~~---------------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 183 RTVRVWDIK---------------------------------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CCEEEEECC---------------------------------CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 999999998 677888999999999999998 578899999999999
Q ss_pred EEEEcCCCcccCCCC---------------ceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 281 RIWEVRAEYWKDSDS---------------IEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~---------------~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
++||+.+........ ...+. .+.+|...|.++...+.++++|+.||.|++||+ +++.+..+.
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG--VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEE--EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEE--EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999998764310000 00122 678899999999888999999999999999999 788899999
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEE
Q 001391 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 424 (1088)
+|.. .|.+++|+|++++|++|+.||.|++||+.... .+..+..|
T Consensus 308 ~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-----------------------------~~~~~~~h------ 351 (464)
T 3v7d_B 308 GHTD-RIYSTIYDHERKRCISASMDTTIRIWDLENGE-----------------------------LMYTLQGH------ 351 (464)
T ss_dssp CCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTE-----------------------------EEEEECCC------
T ss_pred CCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------------EEEEEeCC------
Confidence 9988 79999999999999999999999999984310 00000111
Q ss_pred EEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCC
Q 001391 425 LHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 425 l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~ 504 (1088)
...+.++.+. +..+++++.||.|++|++.+.
T Consensus 352 ---------------------------------------~~~v~~~~~~----------~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 352 ---------------------------------------TALVGLLRLS----------DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp ---------------------------------------SSCEEEEEEC----------SSEEEEEETTSEEEEEETTTC
T ss_pred ---------------------------------------CCcEEEEEEc----------CCEEEEEeCCCcEEEEECCCC
Confidence 2234444432 257888888999999988764
Q ss_pred CcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEE
Q 001391 505 VHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It 584 (1088)
... ....... .....++++++++|++++ ||.|++||+..+. +...+...|...|+
T Consensus 383 ~~~------~~~~~~~----~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~--------------~~~~~~~~~~~~v~ 437 (464)
T 3v7d_B 383 SRK------FSYHHTN----LSAITTFYVSDNILVSGS-ENQFNIYNLRSGK--------------LVHANILKDADQIW 437 (464)
T ss_dssp CEE------EEEECTT----CCCEEEEEECSSEEEEEE-TTEEEEEETTTCC--------------EEESCTTTTCSEEE
T ss_pred cee------eeecCCC----CccEEEEEeCCCEEEEec-CCeEEEEECCCCc--------------EEehhhccCCCcEE
Confidence 321 1111111 122356889999999988 8999999998653 22333446889999
Q ss_pred EEEeeeCCCEEEEEcCCCcEEEEeC
Q 001391 585 CLDASFEDEVLFCGDLRGNLVLFPL 609 (1088)
Q Consensus 585 ~l~~spdg~~LatGs~dg~I~Iw~~ 609 (1088)
+++|+ ++.++++++.||.+.+|-+
T Consensus 438 ~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 438 SVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99998 4556667777877666543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=284.16 Aligned_cols=300 Identities=14% Similarity=0.175 Sum_probs=234.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|++++|+ |+ +++|++|+ ++.|+|||+.+++ .+..+..|.. .|.+++|+ |+++ .+++
T Consensus 7 ~~~~i~~~~~s--~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~~ 69 (372)
T 1k8k_C 7 LVEPISCHAWN--KD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWA-------PDSN---RIVT 69 (372)
T ss_dssp CSSCCCEEEEC--TT----SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEE-------TTTT---EEEE
T ss_pred cCCCeEEEEEC--CC----CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEe-------CCCC---EEEE
Confidence 56789999999 99 89999986 7999999999987 8888888766 79999999 7763 5555
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--- 169 (1088)
++.|+.|++|++.... ......+..|...|.+++|+| ++++|++|+.|+.|++||+..+..
T Consensus 70 ~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRT-------------WKPTLVILRINRAARCVRWAP---NEKKFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp EETTSCEEEEEEETTE-------------EEEEEECCCCSSCEEEEEECT---TSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCe-------------eeeeEEeecCCCceeEEEECC---CCCEEEEEeCCCEEEEEEecCCCccee
Confidence 5669999999997532 334455678999999999999 999999999999999999988763
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc-ccceee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ-QHTAVN 248 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ 248 (1088)
...+..+....+.++.+ ++++.+|++|+.||.|++||+.......... ...|.. ...+..
T Consensus 134 ~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDW---HPNSVLLAAGSCDFKCRIFSAYIKEVEERPA----------------PTPWGSKMPFGEL 194 (372)
T ss_dssp EEEECTTCCSCEEEEEE---CTTSSEEEEEETTSCEEEEECCCTTTSCCCC----------------CBTTBSCCCTTCE
T ss_pred eeeeecccCCCeeEEEE---cCCCCEEEEEcCCCCEEEEEccccccccccc----------------ccccccccchhhh
Confidence 34443444556777777 5788999999999999999986322111000 000000 013566
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCC
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGED 327 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~D 327 (1088)
+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++ .+. .+..|...|.+++|+ +..+++++.|
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~--~~~~~~~~v~~~~~~~~~~~l~~~~d 264 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--------AVA--TLASETLPLLAVTFITESSLVAAGHD 264 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--------EEE--EEECSSCCEEEEEEEETTEEEEEETT
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------eeE--EEccCCCCeEEEEEecCCCEEEEEeC
Confidence 77788999999999999999999999999999999998853 343 677899999999998 3444444599
Q ss_pred CcEEEEcC-C--Cc--ee------------------------------------EEE-cccCCCCeEEEEEc-CCC---C
Q 001391 328 CTCRVWGS-D--GK--QL------------------------------------KMI-KEHIGRGIWRCLYD-SLS---S 361 (1088)
Q Consensus 328 g~i~vWd~-~--~~--~~------------------------------------~~~-~~h~~~~V~~l~~~-~dg---~ 361 (1088)
+.|++|++ . ++ .+ ..+ .+|.. +|++++|. ++| .
T Consensus 265 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 265 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCS 343 (372)
T ss_dssp SSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEESTTTSCS
T ss_pred CeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEecCCCccee
Confidence 99999999 4 31 00 223 47887 79999965 676 8
Q ss_pred EEEEEeCCCCEEEEEcC
Q 001391 362 LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~ 378 (1088)
+|++|+.||.|++|++.
T Consensus 344 ~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 344 QFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEEEETTSEEEEEEHH
T ss_pred eEEEecCCCceEEEEec
Confidence 99999999999999984
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=284.52 Aligned_cols=297 Identities=14% Similarity=0.179 Sum_probs=231.1
Q ss_pred eeeeeEEEEEeccCCCCCCCC-EEEEEe----CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHLSSLP-FLLAGS----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~-~laag~----d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
|.++|++++|+ |+ +. ++++|+ |+.|+|||+.+++........+...|.+++|+|.. ++++ .+
T Consensus 17 h~~~v~~~~~~--p~----~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~---~l 83 (357)
T 3i2n_A 17 FNYTVFDCKWV--PC----SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS----LQQR---YL 83 (357)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCC----TTTC---CE
T ss_pred CCCceEEEEEc--CC----CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCC----CCCc---eE
Confidence 67899999999 98 64 555553 79999999999887665553344479999999421 1242 55
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEec---ccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK---VCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p---~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
++++.|+.|++|++.... ..+..+.+|...|.+++|.+ .++++++|++|+.|+.|++||+.++
T Consensus 84 ~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPE--------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp EEEETTSCEEEECTTSCS--------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred EEecCCCeEEEEeCCCCC--------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 666669999999998532 25677889999999996642 1128999999999999999999988
Q ss_pred c-eEEEeccCC---ceeEEEEeeec-CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 168 S-IILEVHSPE---RCLLYSMKLWG-DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 168 ~-~~~~~~~~~---~~~~~s~~~~~-~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
+ .+..+..+. ...++++.+.. .++++.++++++.||.|++||++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------- 198 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR------------------------------- 198 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-------------------------------
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-------------------------------
Confidence 6 566665333 23456665422 46889999999999999999998
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp---~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~- 318 (1088)
.... .....|...|.+++|+| ++.++++++.|+.|++||+.+.+. ...+......+|...|.+++|++
T Consensus 199 --~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~ 270 (357)
T 3i2n_A 199 --NMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP-----TKGFASVSEKAHKSTVWQVRHLPQ 270 (357)
T ss_dssp --TTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET-----TTEEEEEEEECCSSCEEEEEEETT
T ss_pred --cCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc-----ccceeeeccCCCcCCEEEEEECCC
Confidence 4443 33467899999999999 999999999999999999987543 22221124458999999999984
Q ss_pred -C-EEEEEeCCCcEEEEcC-CC-------------------ceeEEEcccCCCCeEEEEEcCCCCEEE-EEeCCCCEEEE
Q 001391 319 -S-FIITAGEDCTCRVWGS-DG-------------------KQLKMIKEHIGRGIWRCLYDSLSSLLV-TAGFDSAIKVH 375 (1088)
Q Consensus 319 -~-~l~sg~~Dg~i~vWd~-~~-------------------~~~~~~~~h~~~~V~~l~~~~dg~~l~-tg~~Dg~I~iw 375 (1088)
. +|++++.||.|++||+ .+ +.+..+..|.. +|++++|+|++++|+ +++.||.|++|
T Consensus 271 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 271 NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence 3 7999999999999998 32 35677888987 799999999999888 89999999999
Q ss_pred EcCC
Q 001391 376 QFQA 379 (1088)
Q Consensus 376 d~~~ 379 (1088)
++..
T Consensus 350 ~~~~ 353 (357)
T 3i2n_A 350 IVTK 353 (357)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9953
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=288.78 Aligned_cols=283 Identities=15% Similarity=0.186 Sum_probs=232.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe------eEEEEeeeCCcceEEEEecccccccCCC----c
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT------LIRPFQVFHGIRLHGISCNFINCTEGSV----S 84 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~------~~~~~~~~~~~~V~~i~~s~~~~~~~~d----~ 84 (1088)
|.++|++++|+ | ++|++|+ |+.|+|||+.+++ .+..+..|.. .|.+++|+ |+ +
T Consensus 15 h~~~i~~~~~~--~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~~~g 78 (397)
T 1sq9_A 15 HDADIFSVSAC--N------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-GLHHVDVL-------QAIERDA 78 (397)
T ss_dssp SSSCEEEEEEC--S------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT-CEEEEEEE-------EEEETTT
T ss_pred hhcCeEEEEec--C------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC-cEEEEEEe-------cccccCC
Confidence 56899999999 5 4777777 7999999999988 7888887666 79999999 55 4
Q ss_pred ---cceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC-----CCcEEEEEEe----cccCCCCE-EE
Q 001391 85 ---TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-----SHWVFDVCFL----KVCNGNRS-LA 151 (1088)
Q Consensus 85 ---~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~I~~v~f~----p~~~d~~~-la 151 (1088)
+ .+++++.|+.|++|++...... .......+.+| ...|.+++|+ | ++++ |+
T Consensus 79 ~~~~---~l~s~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~l~ 142 (397)
T 1sq9_A 79 FELC---LVATTSFSGDLLFYRITREDET----------KKVIFEKLDLLDSDMKKHSFWALKWGASNDR---LLSHRLV 142 (397)
T ss_dssp EEEE---EEEEEETTSCEEEEEEEECTTT----------CCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEE
T ss_pred cccc---EEEEEcCCCCEEEEEccCCccc----------ccccceeecccccccCCCcEEEEEEeeccCC---CCceEEE
Confidence 3 6666677999999999864310 01226677788 5999999999 8 9999 99
Q ss_pred EEEcCCcEEEEEcCC------CceEE-----Eecc------CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 152 IGCSDNSIRVWDISN------SSIIL-----EVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~------~~~~~-----~~~~------~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
+++.|+.|++||+.+ ++.+. .+.. .....+.++++ ++++ ++++|+.||.|++||+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~l~~~~~dg~i~i~d~~--- 215 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI---SERG-LIATGFNNGTVQISELS--- 215 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE---CTTS-EEEEECTTSEEEEEETT---
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE---CCCc-eEEEEeCCCcEEEEECC---
Confidence 999999999999988 55554 5532 22334556666 5778 99999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC---C---CCCEEEEEEcCCCCEEEEEECC---CcEEEEEc
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG---H---EGSIFRIEWSSCGSKLVSVSDD---RSARIWEV 285 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g---h---~~~V~~v~~sp~g~~l~s~s~D---g~v~iWd~ 285 (1088)
..+.+..+.+ | ...|.+++|+|++++|++++.| +.|++||+
T Consensus 216 ------------------------------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 216 ------------------------------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp ------------------------------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred ------------------------------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 6777888888 9 9999999999999999999999 99999999
Q ss_pred CCCcccCCCCceeeeceeeec-------------cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEc-----
Q 001391 286 RAEYWKDSDSIEEVGSSVLYG-------------HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK----- 344 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~-------------h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~----- 344 (1088)
.+++ .+. .+.+ |...|.+++|+ +.+|++++.||.|++||+ +++.+..+.
T Consensus 266 ~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 335 (397)
T 1sq9_A 266 EFGE--------RIG--SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335 (397)
T ss_dssp TTCC--------EEE--EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred CCCc--------ccc--eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCc
Confidence 8853 332 5555 99999999998 689999999999999999 788888888
Q ss_pred -cc---------------CCCCeEEEEEcCCC----------CEEEEEeCCCCEEEEEcC
Q 001391 345 -EH---------------IGRGIWRCLYDSLS----------SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 345 -~h---------------~~~~V~~l~~~~dg----------~~l~tg~~Dg~I~iwd~~ 378 (1088)
.| .. +|++++|+|++ ++|++++.||.|++|++.
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 336 IEIEEDILAVDEHGDSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CSSGGGCCCBCTTSCBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccchhhhhccccccccccCC-ceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 77 66 79999999998 799999999999999984
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-29 Score=309.11 Aligned_cols=282 Identities=15% Similarity=0.224 Sum_probs=224.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-----CeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-----GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-----g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.+.|++|+|+ |+ ...+|++|+ |++|+|||+.+ +.....+.+|.. .|.+++|+ |+++ .
T Consensus 381 H~~~V~~v~~~--~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s-------~~g~---~ 444 (694)
T 3dm0_A 381 HTDMVTAIATP--ID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVLS-------SDGQ---F 444 (694)
T ss_dssp CSSCEEEEECC--TT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEEC-------TTSS---E
T ss_pred CCceeEEEEec--CC---CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEEC-------CCCC---E
Confidence 77899999999 86 246888888 79999999875 345667788766 79999999 7773 4
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|++|+|||+.. .+....+.+|.+.|.+++|+| ++++|++|+.|++|++||......
T Consensus 445 l~sgs~Dg~v~vwd~~~---------------~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAA---------------GVSTRRFVGHTKDVLSVAFSL---DNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEeCCCcEEEEECCC---------------CcceeEEeCCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEECCCCcc
Confidence 44555699999999974 456778889999999999999 999999999999999999865543
Q ss_pred EEEec--cCCceeEEEEeeecCCCCC--cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 170 ILEVH--SPERCLLYSMKLWGDNLEA--LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 170 ~~~~~--~~~~~~~~s~~~~~~s~~~--~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
..... ..+...+.++++ ++++ ..+++|+.|++|++||+. .
T Consensus 507 ~~~~~~~~~h~~~v~~~~~---~~~~~~~~l~s~s~d~~v~vwd~~---------------------------------~ 550 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRF---SPNTLQPTIVSASWDKTVKVWNLS---------------------------------N 550 (694)
T ss_dssp EEECSSTTSCSSCEEEEEE---CSCSSSCEEEEEETTSCEEEEETT---------------------------------T
T ss_pred eeeccCCCCCCCcEEEEEE---eCCCCcceEEEEeCCCeEEEEECC---------------------------------C
Confidence 33322 123344666766 3443 689999999999999998 6
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEE
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITA 324 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg 324 (1088)
.+....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++. +. . ..+...|.+++|+ +..++++
T Consensus 551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~--------~~--~-~~~~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK--------LY--S-LEANSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE--------EE--C-CBCSSCEEEEEECSSSSEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--------EE--E-ecCCCcEEEEEEcCCCcEEEE
Confidence 677788999999999999999999999999999999999988633 22 2 2345679999999 4555556
Q ss_pred eCCCcEEEEcC-CCceeEEEcccCC------------------CCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 325 GEDCTCRVWGS-DGKQLKMIKEHIG------------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~~h~~------------------~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.++.|++||+ +++.+..+..+.. -.+++++|+|++++|++|+.||.|++|++.
T Consensus 620 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 620 ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 66788999999 6666666543221 027889999999999999999999999984
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-28 Score=268.77 Aligned_cols=289 Identities=17% Similarity=0.251 Sum_probs=234.4
Q ss_pred CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 54 g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
.....++.+|.+ .|.+++|+ |+++ .+++++.|+.|++|++.. .+....+.+|..
T Consensus 13 ~~~~~~~~gh~~-~v~~~~~s-------~~~~---~l~s~~~dg~i~iw~~~~---------------~~~~~~~~~h~~ 66 (312)
T 4ery_A 13 YALKFTLAGHTK-AVSSVKFS-------PNGE---WLASSSADKLIKIWGAYD---------------GKFEKTISGHKL 66 (312)
T ss_dssp CEEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEETTSCEEEEETTT---------------CCEEEEECCCSS
T ss_pred ceeEEEEcccCC-cEEEEEEC-------CCCC---EEEEeeCCCeEEEEeCCC---------------cccchhhccCCC
Confidence 355667777666 79999999 7773 445555699999999874 356677889999
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.|.+++|+| ++++|++|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++++.+|++|+.|+.|++||++
T Consensus 67 ~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~l~s~~~d~~i~iwd~~-- 137 (312)
T 4ery_A 67 GISDVAWSS---DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNF---NPQSNLIVSGSFDESVRIWDVK-- 137 (312)
T ss_dssp CEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEETT--
T ss_pred ceEEEEEcC---CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEE---cCCCCEEEEEeCCCcEEEEECC--
Confidence 999999999 999999999999999999999999888876654 3556665 6788999999999999999998
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+.+++
T Consensus 138 -------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---- 182 (312)
T 4ery_A 138 -------------------------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---- 182 (312)
T ss_dssp -------------------------------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----
T ss_pred -------------------------------CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----
Confidence 677788899999999999999999999999999999999998853
Q ss_pred CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCC--CeEEEEEcCCCCEEEEEeC
Q 001391 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 294 ~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~--~V~~l~~~~dg~~l~tg~~ 368 (1088)
.+. .....+...+..++|+ +.+|++++.|+.|++||+ +++.+..+.+|... .+......+++.+|++|+.
T Consensus 183 ----~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 183 ----CLK-TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp ----EEE-EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT
T ss_pred ----eee-EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC
Confidence 232 1334567789999998 679999999999999999 78888888888762 1222333467889999999
Q ss_pred CCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe---cCCeEEEE
Q 001391 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT---NHGYLYHT 445 (1088)
Q Consensus 369 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t---~~g~i~~~ 445 (1088)
||.|++||+.... .+..+.+|...|.+++|+|++.+++++ .++.+..|
T Consensus 258 dg~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 258 DNLVYIWNLQTKE-----------------------------IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp TSCEEEEETTTCC-----------------------------EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCch-----------------------------hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 9999999995421 122344566789999999999877765 47777755
Q ss_pred E
Q 001391 446 K 446 (1088)
Q Consensus 446 ~ 446 (1088)
+
T Consensus 309 ~ 309 (312)
T 4ery_A 309 K 309 (312)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=282.22 Aligned_cols=289 Identities=12% Similarity=0.138 Sum_probs=220.6
Q ss_pred eeeeeEEEEEeccCCCCCCC-CEEEEEe-CCeEEEEECCCCeeEEEEee-eCCcceEEEEecccccccCC-CccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSL-PFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTEGS-VSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~-~~laag~-d~~I~vwd~~tg~~~~~~~~-~~~~~V~~i~~s~~~~~~~~-d~~~~~~~l 91 (1088)
|.+.|++++|+ |+ + ++|++|+ |+.|+|||+.+++....+.. .+...|.+++|+ | +++ .++
T Consensus 72 h~~~v~~~~~~--~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~---~l~ 135 (383)
T 3ei3_B 72 FDRRVTSLEWH--PT----HPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN-------QFNTN---QLF 135 (383)
T ss_dssp CSSCEEEEEEC--SS----CTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE-------TTEEE---EEE
T ss_pred CCCCEEEEEEC--CC----CCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeC-------CCCCC---EEE
Confidence 56889999999 98 6 8999988 79999999999888877763 233479999999 6 441 445
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
+++.|+.|++||+.... ........+|...|.+++|+| ++++|++|+.|+.|++||+ +++.+.
T Consensus 136 s~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~-~~~~~~ 198 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSV-------------IQVFAKTDSWDYWYCCVDVSV---SRQMLATGDSTGRLLLLGL-DGHEIF 198 (383)
T ss_dssp EEETTTEEEEEETTSCE-------------EEEEECCCCSSCCEEEEEEET---TTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred EEeCCCEEEEEECCCCc-------------eEEEeccCCCCCCeEEEEECC---CCCEEEEECCCCCEEEEEC-CCCEEE
Confidence 55569999999998422 333444455668999999999 9999999999999999999 567777
Q ss_pred EeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.+..+.. .+.++++ ++++. ++++|+.|+.|++||+.+.+. ....+.
T Consensus 199 ~~~~h~~-~v~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~~~~ 245 (383)
T 3ei3_B 199 KEKLHKA-KVTHAEF---NPRCDWLMATSSVDATVKLWDLRNIKD-----------------------------KNSYIA 245 (383)
T ss_dssp EEECSSS-CEEEEEE---CSSCTTEEEEEETTSEEEEEEGGGCCS-----------------------------TTCEEE
T ss_pred EeccCCC-cEEEEEE---CCCCCCEEEEEeCCCEEEEEeCCCCCc-----------------------------ccceEE
Confidence 7766554 4667776 57777 999999999999999982110 133444
Q ss_pred EEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccC----------cceEEEEEC
Q 001391 251 RLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHN----------ARVWDCCLT 317 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~----------~~I~~v~~~ 317 (1088)
.+ +|...|.+++|+| ++++|++++.|+.|++||+.+.+. ...+.. .....|. ..+..++|+
T Consensus 246 ~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s 319 (383)
T 3ei3_B 246 EM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK-----PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY 319 (383)
T ss_dssp EE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS-----CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB
T ss_pred Ee-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc-----ccccccccccccccccceEEeccCCCCceEEEec
Confidence 44 7999999999999 999999999999999999988654 111110 0111222 234445554
Q ss_pred -CCEEEEEeCCCcEEEEcC-CCceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 318 -DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+..+ +++.|+.|++||+ +++.+..+.+|. ...+..++|+|++++|++|+ ||.|++|+++
T Consensus 320 ~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 320 PDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred CCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 2223 7789999999999 788999998743 32577779999999999997 9999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=300.46 Aligned_cols=323 Identities=12% Similarity=0.094 Sum_probs=221.8
Q ss_pred CCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc---CCCCEEEEEEcCC
Q 001391 82 SVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC---NGNRSLAIGCSDN 157 (1088)
Q Consensus 82 ~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~---~d~~~lasgs~Dg 157 (1088)
|++ .++++ +.|++|+||++..... .......+.+|.+.|++++|+|.. +++.+||+|+.||
T Consensus 171 ~~~----~~laS~s~D~tI~iWd~~~~~~-----------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg 235 (524)
T 2j04_B 171 EHL----EMFDKEKHSSCIQIFKMNTSTL-----------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG 235 (524)
T ss_dssp ---------------CEEEEEEEEETTTC-----------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS
T ss_pred hhh----hhhccCCCCceEEEEEccCCCC-----------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC
Confidence 666 45554 4599999999975330 012234466788999999999920 1257999999999
Q ss_pred cEEEEEcCCCceE-----------EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 158 SIRVWDISNSSII-----------LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 158 ~V~iWd~~~~~~~-----------~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
+|++||+.++... ..+..+. ..+.++++. ++ ..|++|+.||+|++||+.
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-~~v~sv~~s---~~-~~lasgs~DgtV~lWD~~--------------- 295 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLAD-SLITTFDFL---SP-TTVVCGFKNGFVAEFDLT--------------- 295 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTT-TCEEEEEES---SS-SEEEEEETTSEEEEEETT---------------
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCC-CCEEEEEec---CC-CeEEEEeCCCEEEEEECC---------------
Confidence 9999999876421 2344343 346777773 33 489999999999999998
Q ss_pred CCCCCCCCceeEecccccce-eeeEEEeCCCCCEEEE--EEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 227 AHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRI--EWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~v--~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
++ .+...+.+|.+.|.+| +|+|++ .+|+|+|.|++|+|||+++.+. ..
T Consensus 296 ------------------~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~--------~~-- 347 (524)
T 2j04_B 296 ------------------DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT--------TK-- 347 (524)
T ss_dssp ------------------BCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH--------HC--
T ss_pred ------------------CCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc--------cc--
Confidence 32 3456688999999999 578888 8999999999999999987532 22
Q ss_pred eeeccCc--ceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 303 VLYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 303 ~~~~h~~--~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.+.+|.. .|++++|+ +..+++++.|++|++||+ .+.++..+.+|.+ +|++++|+|++++|++|+.||+|++|++
T Consensus 348 ~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 348 TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 4556653 47899998 468999999999999999 7777888899998 7999999999999999999999999998
Q ss_pred CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEE
Q 001391 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1088)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~ 457 (1088)
....+....... .+ .+...+.+++|+|++..+.....-.+. .+.. ......
T Consensus 427 ~~~~~~~~~~~~------------------------~~-~~~~~v~~v~~sp~g~~~~~~~~~~~~---~~~~-~g~~~~ 477 (524)
T 2j04_B 427 ARRLLHGIKNSS------------------------AT-QKSLRLWKWDYSIKDDKYRIDSSYEVY---PLTV-NDVSKA 477 (524)
T ss_dssp CSSTTTCC-------------------------------CCCCEEEECBCCSSSCEEEECCCCCCC---C----------
T ss_pred hHhhccccccCc------------------------cc-eeeeEEEEeccCCCCCeEEccCCceec---cccc-CCccee
Confidence 654332211000 00 011246688899988755432221111 1110 111112
Q ss_pred eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 458 ~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
.+.++ ...|.++++.++. ....++|+|+.+|.|+||++..
T Consensus 478 ~l~gh-~~~V~~Vafsp~~-----~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 478 KIDAH-GINITCTKWNETS-----AGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ----C-CCSCCCEEECCST-----TTTTEEEEECTTSEEEEEECSC
T ss_pred eecCC-CceEEEEECCCCC-----CccHHHHhhccCceEEEEEccc
Confidence 23344 5678888887764 2346999999999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=289.21 Aligned_cols=347 Identities=12% Similarity=0.112 Sum_probs=240.8
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEE-eeeCCcceEEEEecccccccCC-CccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPF-QVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~-~~~~~~~V~~i~~s~~~~~~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
+..++++. .|+ .+++++..+ .+|.+ .|.+++|+ | +++ .+++++.|++|+|||+.......
T Consensus 39 ~~~~~~~~-----~w~-~~g~~~~~~~~~h~~-~V~~~~~s-------~~~~~---~l~s~s~dg~v~vwd~~~~~~~~- 100 (437)
T 3gre_A 39 QEIVRSPN-----MGN-LRGKLIATLMENEPN-SITSSAVS-------PGETP---YLITGSDQGVIKIWNLKEIIVGE- 100 (437)
T ss_dssp CCCCCCCC-----GGG-CCCCEEEEECTTTTS-CEEEEEEE-------CSSSC---EEEEEETTSEEEEEEHHHHHTTC-
T ss_pred cccccccc-----ccc-ccceEEeeeccCCCC-ceEEEEEC-------CCCCC---EEEEecCCceEEEeECcccccCc-
Confidence 55555544 487 567899999 55444 89999999 7 762 44445569999999997521000
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC---CCceEEEeccC-----------Cc
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS---NSSIILEVHSP-----------ER 178 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~---~~~~~~~~~~~-----------~~ 178 (1088)
..+....+ +|...|.+++|+| ++++|++|+.|++|++||+. +++.......+ ..
T Consensus 101 --------~~~~~~~~-~h~~~v~~~~~~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 168 (437)
T 3gre_A 101 --------VYSSSLTY-DCSSTVTQITMIP---NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168 (437)
T ss_dssp --------CCSCSEEE-ECSSCEEEEEECT---TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSC
T ss_pred --------ccceeeec-cCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccc
Confidence 01122222 5899999999999 99999999999999999995 55554433221 12
Q ss_pred eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC--CC
Q 001391 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG--HE 256 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g--h~ 256 (1088)
..+.++.+. .++++.++++|+.||.|++||++ ..+.+..+.+ |.
T Consensus 169 ~~~~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~---------------------------------~~~~~~~~~~~~h~ 214 (437)
T 3gre_A 169 EYAVRMRAF-VNEEKSLLVALTNLSRVIIFDIR---------------------------------TLERLQIIENSPRH 214 (437)
T ss_dssp CCEEEEEEE-ECSSCEEEEEEETTSEEEEEETT---------------------------------TCCEEEEEECCGGG
T ss_pred cCceEEEEE-EcCCCCEEEEEeCCCeEEEEeCC---------------------------------CCeeeEEEccCCCC
Confidence 222233221 35678999999999999999998 6777888888 89
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee-eccCcceEEEEECC------CEEEEEeCCCc
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLTD------SFIITAGEDCT 329 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~~h~~~I~~v~~~~------~~l~sg~~Dg~ 329 (1088)
+.|.+++|+|++++|++++.|+.|++||++++ +.+. .+ .+|...|.++++++ .+|++|+.||+
T Consensus 215 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------~~~~--~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 215 GAVSSICIDEECCVLILGTTRGIIDIWDIRFN--------VLIR--SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp CCEEEEEECTTSCEEEEEETTSCEEEEETTTT--------EEEE--EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--------cEEE--EEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 99999999999999999999999999999985 3333 33 37888999998763 38999999999
Q ss_pred EEEEcC-CCceeEEEcccC-------------------------CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCC
Q 001391 330 CRVWGS-DGKQLKMIKEHI-------------------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLP 382 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~-------------------------~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~ 382 (1088)
|++||+ +++.+..+.+|. ...|++++|+ ++++|++|+.||.|++||+.. ...
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 999999 688777776542 1258889999 778999999999999999954 323
Q ss_pred CcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec
Q 001391 383 GSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS 462 (1088)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~ 462 (1088)
..+.++. .....+....+++...++... ++............
T Consensus 364 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~- 405 (437)
T 3gre_A 364 KAVISPS---------------------------RFSDVFIPTQVTANLTMLLRK----------MKRTSTHSVDDSLY- 405 (437)
T ss_dssp EEEECC-----------------------------CCCEEEEEEEETTEEEEEEE----------CC-------------
T ss_pred eEEeccc---------------------------ccCceEEEEEeecceEEEEEe----------cccccccccCcccc-
Confidence 3222221 011223444455443333322 00000000011122
Q ss_pred CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 463 EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 463 ~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
+...|.++++.+. ++..+|++|+.||.|++|+
T Consensus 406 h~~~I~~i~~~~~------~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 406 HHDIINSISTCEV------DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEES------SSSEEEEEEETTSCEEEEC
T ss_pred cccceeeEeeecc------CCceEEEEEcCCceEEEeC
Confidence 3567888887654 1347999999999999994
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=284.00 Aligned_cols=325 Identities=12% Similarity=0.158 Sum_probs=236.7
Q ss_pred eeeeeEEEEEeccCCCC-CCCCEEEEEeCCeEEEEECCCCeeEEEEeeeC----CcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHL-SSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH----GIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~-~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~----~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
|.++|++++|+ |+.. +...+++++.++.|+|||+.+++.+..+..+. ...|.+++|+|.. .+++ ..+
T Consensus 17 h~~~v~~i~~~--p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~---~~l 88 (366)
T 3k26_A 17 HNQPLFGVQFN--WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS---NTSH---PLL 88 (366)
T ss_dssp TCSCEEEEEEC--TTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECT---TTCC---EEE
T ss_pred CCCceEEEEEe--cccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCC---CCCC---CEE
Confidence 67899999999 8300 12335555668999999999988888777543 2469999999431 0114 144
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
++++.|+.|++||+.. .+.+..+.+|...|.+++|+| .++.+|++|+.|+.|++||+.+++.+
T Consensus 89 ~~~~~dg~i~v~d~~~---------------~~~~~~~~~~~~~i~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~ 151 (366)
T 3k26_A 89 AVAGSRGIIRIINPIT---------------MQCIKHYVGHGNAINELKFHP--RDPNLLLSVSKDHALRLWNIQTDTLV 151 (366)
T ss_dssp EEEETTCEEEEECTTT---------------CCEEEEEESCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred EEecCCCEEEEEEchh---------------ceEeeeecCCCCcEEEEEECC--CCCCEEEEEeCCCeEEEEEeecCeEE
Confidence 4455699999999874 456777889999999999998 25689999999999999999999988
Q ss_pred EEec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 171 LEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 171 ~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
..+. ......+.++++ ++++.+|++++.||.|++||+.+.+...........++++.......... ....
T Consensus 152 ~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 223 (366)
T 3k26_A 152 AIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI-----HFPD 223 (366)
T ss_dssp EEECSTTSCSSCEEEEEE---CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE-----CCCS
T ss_pred EEecccccccCceeEEEE---CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee-----ccCc
Confidence 8873 233445677777 67889999999999999999985432211100001111111111001110 1123
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc------CCCCceeeeceeeeccCcceEEEEEC----C
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYGHNARVWDCCLT----D 318 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~------~~~~~~~i~~~~~~~h~~~I~~v~~~----~ 318 (1088)
.....+|...|.+++|+ ++++++++.|+.|++||+.+.... .......+. .+.+|...|++++|+ +
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG--RFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE--EEECSSCCSSCCCCEECTTS
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec--cccccCCcEEEEEEcCCCCC
Confidence 34456799999999998 779999999999999999876431 001112233 777899999999887 5
Q ss_pred CEEEEEeCCCcEEEEcC-CCc----eeEEEccc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 319 SFIITAGEDCTCRVWGS-DGK----QLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 319 ~~l~sg~~Dg~i~vWd~-~~~----~~~~~~~h--~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+|++|+.||.|++||+ .++ ....+..| .. +|++++|+|++++|++++.||.|++||+.
T Consensus 300 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGA-AIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCS-CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEecCCcEEEEECCCCCCccccceEEcccccCC-ceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 79999999999999999 443 44577777 45 79999999999999999999999999974
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=279.74 Aligned_cols=277 Identities=14% Similarity=0.229 Sum_probs=221.3
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
...|+|| ++ .+||+|.|++|+|||+.+|+++..+..+ +...|.+++|+ |+|+ .+++++.|++
T Consensus 108 ~~~l~wS--~~-----n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-------pdg~---~lasgs~Dg~ 170 (420)
T 4gga_A 108 LNLVDWS--SG-----NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-------KEGN---YLAVGTSSAE 170 (420)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-------TTSS---EEEEEETTSC
T ss_pred ceeEEEC--CC-----CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-------CCCC---EEEEEECCCe
Confidence 4568888 65 6999999999999999999998888753 34469999999 8873 4445556999
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-EEEeccCC
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE 177 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-~~~~~~~~ 177 (1088)
|+|||++. .+.+..+.+|...|.++++ ++.+|++|+.|+.+++||...... +..+..+.
T Consensus 171 v~iWd~~~---------------~~~~~~~~~h~~~v~~~s~-----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~ 230 (420)
T 4gga_A 171 VQLWDVQQ---------------QKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230 (420)
T ss_dssp EEEEETTT---------------TEEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEEEcCC---------------CcEEEEEeCCCCceEEEee-----CCCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence 99999985 4678888999999999887 457999999999999999986544 45555554
Q ss_pred ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
.. +..+.+ .+++.++++++.|+.|++|+..+.+. ....+.....|.+
T Consensus 231 ~~-~~~~~~---~~~g~~l~s~~~D~~v~i~~~~~~~~-----------------------------~~~~~~~~~~~~~ 277 (420)
T 4gga_A 231 QE-VCGLRW---APDGRHLASGGNDNLVNVWPSAPGEG-----------------------------GWVPLQTFTQHQG 277 (420)
T ss_dssp SC-EEEEEE---CTTSSEEEEEETTSCEEEEESSCCSS-----------------------------CSCCSEEECCCSS
T ss_pred cc-eeeeee---cCCCCeeeeeeccccceEEeeccccc-----------------------------cceeeeeecccCC
Confidence 43 344444 67899999999999999999872211 2234667788999
Q ss_pred CEEEEEEcCCCC-EEEE--EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe--CCCcE
Q 001391 258 SIFRIEWSSCGS-KLVS--VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG--EDCTC 330 (1088)
Q Consensus 258 ~V~~v~~sp~g~-~l~s--~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~--~Dg~i 330 (1088)
.|.+++|+|++. .+++ |+.|++|++||+.+++. +. .+. +...+.++.|. +..+++++ .|+.|
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~--------~~--~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--------LS--AVD-AHSQVCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE--------EE--EEE-CSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc--------ce--eec-cccceeeeeecCCCCeEEEEEecCCCEE
Confidence 999999999765 5554 45799999999998643 32 333 44567788887 56666654 79999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
++||+ +++++..+.+|.+ .|++++|+|+|++|+||+.|++|++||+.
T Consensus 347 ~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 347 VIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999 8899999999998 79999999999999999999999999984
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=278.00 Aligned_cols=291 Identities=12% Similarity=0.087 Sum_probs=213.8
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCC--------eEEEEECCCCee--------EEE--EeeeCCcceEEEEecccccc
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGS--------QVLLYDLEAGTL--------IRP--FQVFHGIRLHGISCNFINCT 79 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~--------~I~vwd~~tg~~--------~~~--~~~~~~~~V~~i~~s~~~~~ 79 (1088)
.||.|++|+ || +++|++|+++ .|++|++..+.. ... +..++ ..|.++++++..+.
T Consensus 15 ~PV~sv~fs--~d----g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~-~~v~s~~~~~~~~~ 87 (365)
T 4h5i_A 15 YPAYGAKFL--NN----DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND-DSPTAIDASKGIIL 87 (365)
T ss_dssp SCEEEEEEE--ET----TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS-CCCCEEEEETTEEE
T ss_pred CCEEEEEEe--CC----CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC-CceEEEEeCCCEEE
Confidence 489999999 99 8999998742 499999876532 111 22223 35777777622110
Q ss_pred cC--CCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceee-----eccCCCCcEEEEEEecccCCCCEEE
Q 001391 80 EG--SVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-----SLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 80 ~~--~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~-----~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
.+ .++ ..++. ..|+.+|+|++..... ..+... ....+.+.+.+++|+| ||++|+
T Consensus 88 ~g~~~~~----~~l~s~~~d~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~fSp---Dg~~la 149 (365)
T 4h5i_A 88 VGCNENS----TKITQGKGNKHLRKFKYDKVND-----------QLEFLTSVDFDASTNADDYTKLVYISR---EGTVAA 149 (365)
T ss_dssp EECCCCH----HHHHHTSCCCCEEEEEEETTTT-----------EEEEEEEECSSCCCCTTCCEEEEEECT---TSSCEE
T ss_pred EEECCCc----cEEEEecCCCcEEEEEecCCCc-----------eEEEeeeeceeecCCcccCEEEEEEcC---CCCEEE
Confidence 00 000 11111 2378899999875430 011111 2234557799999999 999877
Q ss_pred EEE--cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 152 IGC--SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 152 sgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
+++ .|++|+|||+.+++.+..+..+. .+++++| +|++.++++++.+ .+++|+..
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~~~~--~V~~v~f---spdg~~l~s~s~~-~~~~~~~~------------------ 205 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIETRG--EVKDLHF---STDGKVVAYITGS-SLEVISTV------------------ 205 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEECSS--CCCEEEE---CTTSSEEEEECSS-CEEEEETT------------------
T ss_pred EEECCCCCEEEEeECCCCcEEEEeCCCC--ceEEEEE---ccCCceEEeccce-eEEEEEec------------------
Confidence 654 68999999999999988876432 3667776 7899999999855 56666655
Q ss_pred CCCCCceeEecccccceeee--EEEeCCCCCEEEEEEcCCCCEEEEEECCC----cEEEEEcCCCcccCCCCceeeecee
Q 001391 230 SSSDFKCFKLQDQQHTAVNL--FRLVGHEGSIFRIEWSSCGSKLVSVSDDR----SARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~--~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
++..+ ....+|...|.+++|+|+++++++++.|+ .+++|++..... .......
T Consensus 206 ---------------~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~------~~~~~~~ 264 (365)
T 4h5i_A 206 ---------------TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT------SVLRSKQ 264 (365)
T ss_dssp ---------------TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE------EEEEEEE
T ss_pred ---------------cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee------cceeeee
Confidence 22222 23457899999999999999999999887 688899876532 2222236
Q ss_pred eeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+.+|...|++++|+ +.+|++|+.|++|+|||+ +++++..+ .+|.. +|++++|+|||++|++|+.|++|+||++..
T Consensus 265 ~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 265 VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 78899999999998 689999999999999999 78888875 78988 799999999999999999999999999953
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=261.90 Aligned_cols=276 Identities=16% Similarity=0.228 Sum_probs=229.0
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|. . +.+|++|+ |+.|+|||+.+++....+..|.. .|.+++|+ |+++ .+++++
T Consensus 17 h~~~v~~~~~~--~-----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~~---~l~~~~ 78 (313)
T 3odt_A 17 HDQDVRDVVAV--D-----DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG-FLNSVCYD-------SEKE---LLLFGG 78 (313)
T ss_dssp CSSCEEEEEEE--E-----TTEEEEEETTSEEEEEEESSSEEEEEEEECSS-CEEEEEEE-------TTTT---EEEEEE
T ss_pred CCCCcEEEEec--C-----CCEEEEEEcCCcEEEEECCCCEEEEEeecCCc-cEEEEEEC-------CCCC---EEEEec
Confidence 67899999995 3 57788877 79999999999999998888766 79999999 7763 555666
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.|++|++.... ..+.+..+.+|...|.+++|. +++|++++.|+.|++|| .++....+.
T Consensus 79 ~dg~i~~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 79 KDTMINGVPLFATS------------GEDPLYTLIGHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp TTSCEEEEETTCCT------------TSCC-CEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred CCCeEEEEEeeecC------------CCCcccchhhcccCEEEEEec-----CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 69999999998533 235567788999999999994 46899999999999999 566666666
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+.. .+.++.+.+ +++..+++++.||.|++||.. .....+..
T Consensus 140 ~~~~-~v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~-----------------------------------~~~~~~~~ 181 (313)
T 3odt_A 140 AHNA-SVWDAKVVS--FSENKFLTASADKTIKLWQND-----------------------------------KVIKTFSG 181 (313)
T ss_dssp CCSS-CEEEEEEEE--TTTTEEEEEETTSCEEEEETT-----------------------------------EEEEEECS
T ss_pred cCCC-ceeEEEEcc--CCCCEEEEEECCCCEEEEecC-----------------------------------ceEEEEec
Confidence 5543 355555532 368899999999999999954 34555666
Q ss_pred -CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEE
Q 001391 255 -HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 -h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~v 332 (1088)
|...|.+++|+|++. +++++.|+.|++||+.++ +.+. .+.+|...|.+++|+ +..|++++.||.|++
T Consensus 182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~--------~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~i 250 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG--------DVLR--TYEGHESFVYCIKLLPNGDIVSCGEDRTVRI 250 (313)
T ss_dssp SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC--------CEEE--EEECCSSCEEEEEECTTSCEEEEETTSEEEE
T ss_pred cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch--------hhhh--hhhcCCceEEEEEEecCCCEEEEecCCEEEE
Confidence 999999999999998 999999999999999885 3343 677899999999999 348999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
||+ +++.+..+..|.. +|++++|+|+++ +++++.||.|++|+++.
T Consensus 251 wd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 251 WSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred EECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 999 8888999999987 799999999998 66799999999999965
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=264.41 Aligned_cols=277 Identities=14% Similarity=0.212 Sum_probs=221.6
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
..+|+|| ++ .+||+|.|++|+|||+.+|++++.++.+ +...|.+++|+ |+++ .+++++.|++
T Consensus 28 ~~~l~WS--~~-----~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-------~~~~---~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWS--SG-----NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-------KEGN---YLAVGTSSAE 90 (318)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-------TTSS---EEEEEETTSE
T ss_pred ceEEEEC--CC-----CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-------CCCC---EEEEEECCCc
Confidence 4679999 87 4899999999999999999999988753 34469999999 7773 4555566999
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-EEEeccCC
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE 177 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-~~~~~~~~ 177 (1088)
|+||+++. .+.+..+.+|...+.++.+ ++..+++|+.++.+++|+...... +..+..+.
T Consensus 91 v~iw~~~~---------------~~~~~~~~~h~~~~~~~~~-----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (318)
T 4ggc_A 91 VQLWDVQQ---------------QKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150 (318)
T ss_dssp EEEEETTT---------------TEEEEEEECCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEeecCC---------------ceeEEEecCccceEEEeec-----CCCEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence 99999985 4677888899999887766 557999999999999999987654 44444444
Q ss_pred ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
. .+..+.+ .+++.++++++.||.|++||+.+.+. ..........|.+
T Consensus 151 ~-~~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 151 Q-EVCGLRW---APDGRHLASGGNDNLVNVWPSAPGEG-----------------------------GWVPLQTFTQHQG 197 (318)
T ss_dssp S-CEEEEEE---CTTSSEEEEEETTSCEEEEESSCBTT-----------------------------BSCCSEEECCCCS
T ss_pred C-ceEEEEE---cCCCCEEEEEecCcceeEEECCCCcc-----------------------------cccceeeecccCC
Confidence 3 3444444 57789999999999999999983221 2234556678899
Q ss_pred CEEEEEEcCCCCEE---EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE--eCCCcE
Q 001391 258 SIFRIEWSSCGSKL---VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA--GEDCTC 330 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l---~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg--~~Dg~i 330 (1088)
.|.+++++|++..+ ++++.+++|++||...... .....+...+..+.|. +..++++ +.|++|
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 266 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----------cccccceeeeeeeeecccccceEEEEEcCCCEE
Confidence 99999999977543 4567889999999987533 2445667788888887 4566554 489999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
++||+ +++++..+.+|.+ +|++++|+|++++|+||+.||+|++||+.
T Consensus 267 ~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 267 VIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999 8999999999998 79999999999999999999999999984
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=299.40 Aligned_cols=292 Identities=17% Similarity=0.215 Sum_probs=227.4
Q ss_pred cceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCCC-----ceEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~-----~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
.+....+.+|.+.|++++|+| + +++|+||+.|++|++||+.+. .....+.+|.. .+.++++ ++++.+
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~---~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~---s~~g~~ 444 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPI---DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVL---SSDGQF 444 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCT---TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEE---CTTSSE
T ss_pred cchhhhcccCCceeEEEEecC---CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEE---CCCCCE
Confidence 344567889999999999998 5 479999999999999999764 23445555554 3566666 688999
Q ss_pred EEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
|++|+.||+|++||+. ++..+..+.+|.+.|.+++|+|++++|+|++
T Consensus 445 l~sgs~Dg~v~vwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 491 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLA---------------------------------AGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS 491 (694)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEeCCCcEEEEECC---------------------------------CCcceeEEeCCCCCEEEEEEeCCCCEEEEEe
Confidence 9999999999999998 6777888999999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC----CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCC
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~----~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~ 350 (1088)
.|++|++||...... ..+. ....+|...|.+++|++ ..+++++.|++|++||+ .++....+.+|.+ .
T Consensus 492 ~D~~i~iwd~~~~~~------~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~ 563 (694)
T 3dm0_A 492 RDRTIKLWNTLGECK------YTIS-EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-Y 563 (694)
T ss_dssp TTSCEEEECTTSCEE------EEEC-SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-C
T ss_pred CCCEEEEEECCCCcc------eeec-cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-C
Confidence 999999999865321 1111 13357999999999983 47999999999999999 7788888999998 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
|++++|+|++++|++|+.||.|++||+.... .+.. +. +...|.+++|+|+
T Consensus 564 v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~-----------------~~~~------------~~-~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-----------------KLYS------------LE-ANSVIHALCFSPN 613 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSBCEEEETTTTE-----------------EEEC------------CB-CSSCEEEEEECSS
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------------eEEE------------ec-CCCcEEEEEEcCC
Confidence 9999999999999999999999999995321 0111 11 1246899999999
Q ss_pred CeEEEEecCCeEEEEEeccCCcceeEEeeeecC------------------CcceEEEecCCCCCCCcCCCCCeEEEecC
Q 001391 431 DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSE------------------GMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (1088)
Q Consensus 431 ~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~------------------~~~i~~l~~~~~~~~~s~~~~~~la~g~~ 492 (1088)
+.+++++.++.+..|++..... ......+. ...+.+++++ +++.+|++|+.
T Consensus 614 ~~~l~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s--------pdg~~l~sgs~ 682 (694)
T 3dm0_A 614 RYWLCAATEHGIKIWDLESKSI---VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS--------ADGSTLFSGYT 682 (694)
T ss_dssp SSEEEEEETTEEEEEETTTTEE---EEEECCCCC----------------CCCCEEEEEEC--------TTSSEEEEEET
T ss_pred CcEEEEEcCCCEEEEECCCCCC---hhhhccccccccccccccccccCCceeEEeeeEEEc--------CCCCEEEEEcC
Confidence 9999998888888665543221 11111110 0124455554 35689999999
Q ss_pred CCCEEEEEEc
Q 001391 493 KGNMTIVRVV 502 (1088)
Q Consensus 493 dg~I~iw~~~ 502 (1088)
||.|++|++.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999975
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=288.63 Aligned_cols=301 Identities=12% Similarity=0.079 Sum_probs=220.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
.++|++++|+ |+ +++|++|+ |+.|+|||+.++ +++..+..|.. .|.+++|+ |+++ .++++
T Consensus 11 ~~~v~~~~~s--~~----g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~s~ 73 (377)
T 3dwl_C 11 PKPSYEHAFN--SQ----RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDWA-------PKSN---RIVTC 73 (377)
T ss_dssp SSCCSCCEEC--SS----SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEEC-------TTTC---CEEEE
T ss_pred CCcEEEEEEC--CC----CCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEEe-------CCCC---EEEEE
Confidence 3689999999 99 89999986 799999999998 78888888766 79999999 7763 55555
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc---eE
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS---II 170 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~---~~ 170 (1088)
+.|++|++||+.... .......+.+|...|.+++|+| ++++|++|+.|+.|++||+.+++ ..
T Consensus 74 s~d~~v~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDG------------TWKQTLVLLRLNRAATFVRWSP---NEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp ETTSSEEEC------------------CCCCEEECCCCSSCEEEEECCT---TSSCCEEEESSSCEEECCC-----CCCC
T ss_pred eCCCeEEEEEcCCCC------------ceeeeeEecccCCceEEEEECC---CCCEEEEEecCCeEEEEEECCcccceee
Confidence 669999999998532 1345667788999999999999 99999999999999999999876 36
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc-cceeee
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ-HTAVNL 249 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ 249 (1088)
..+..+....+.++++ ++++.+|++|+.|+.|++||+...+....... . .|... ..+..+
T Consensus 139 ~~~~~~h~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~------------~~~~~~~~~~~~ 199 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDW---HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA----S------------VWGSRLPFNTVC 199 (377)
T ss_dssp EEECSSCCSCEEEEEE---CTTSSEEEEEESSSCEEEEEECCSSCC-CCCS----C------------SSCSCCCEEEEE
T ss_pred eEeecccCCCeEEEEE---cCCCCEEEEEeCCCEEEEEEEEecccCCCccc----c------------ccccccchhhhh
Confidence 6666644556778777 67889999999999999999973322111100 0 00000 134555
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
..+ +|.+.|.+++|+|++++|++++.|+.|++||+.+++.. ...+. .+.+|...|.+++|+ +.+|++|+.+
T Consensus 200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP----PRALI--TVKLSQLPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC----EEECC--CEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc----ceeeE--eecCCCCceEEEEEcCCCCEEEEEcCC
Confidence 566 99999999999999999999999999999999986430 11133 788999999999998 5677777655
Q ss_pred CcEEEEcCC-Cc--e-------------------------e---------EEE----------------cccCCCCeEEE
Q 001391 328 CTCRVWGSD-GK--Q-------------------------L---------KMI----------------KEHIGRGIWRC 354 (1088)
Q Consensus 328 g~i~vWd~~-~~--~-------------------------~---------~~~----------------~~h~~~~V~~l 354 (1088)
+.+ +|+.. +. . . ..+ ..|.+ .|+++
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~-~i~~~ 350 (377)
T 3dwl_C 273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQN-MIATL 350 (377)
T ss_dssp SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSS-CEEEE
T ss_pred cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccc-eeEEE
Confidence 555 77662 11 0 0 111 12777 79999
Q ss_pred EEcCCC-C---EEEEEeCCCCEEEEEc
Q 001391 355 LYDSLS-S---LLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 355 ~~~~dg-~---~l~tg~~Dg~I~iwd~ 377 (1088)
++.+.. . .|+|||.||.|++||+
T Consensus 351 ~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 351 RPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred eccCCCCCceEEEEeecCCCcEEEecC
Confidence 976543 3 6999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=279.19 Aligned_cols=318 Identities=15% Similarity=0.193 Sum_probs=233.8
Q ss_pred CCCceEEecCCCc-------eeeeeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEee-----------
Q 001391 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV----------- 62 (1088)
Q Consensus 3 d~~i~iWdl~~g~-------~~~~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~----------- 62 (1088)
++++++|++..++ |.++|++++|+ | + +++|++|+ |+.|+|||+.+++....+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s--~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIE--PVE----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEEC--TTT----CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEe--cCC----CCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence 4457788877655 77899999999 9 8 88999988 79999999998876665541
Q ss_pred -eCCcceEEEEecccccccCC-CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 001391 63 -FHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (1088)
Q Consensus 63 -~~~~~V~~i~~s~~~~~~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f 140 (1088)
.+...|.+++|+ | +++ .+++++.|+.|++||+... +....+. +...+.++.+
T Consensus 96 ~~~~~~v~~~~~~-------~~~~~---~l~s~~~d~~i~iwd~~~~---------------~~~~~~~-~~~~~~~~~~ 149 (408)
T 4a11_B 96 DVHRYSVETVQWY-------PHDTG---MFTSSSFDKTLKVWDTNTL---------------QTADVFN-FEETVYSHHM 149 (408)
T ss_dssp TCCSSCEEEEEEC-------TTCTT---CEEEEETTSEEEEEETTTT---------------EEEEEEE-CSSCEEEEEE
T ss_pred ccCCCcEEEEEEc-------cCCCc---EEEEEeCCCeEEEeeCCCC---------------ccceecc-CCCceeeeEe
Confidence 134479999999 5 441 4555556999999999853 3344443 7788999999
Q ss_pred ecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCC
Q 001391 141 LKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 141 ~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
+|...++.++++|+.|+.|++||+.+++.+..+..+.. .+.++++ ++++. ++++|+.||.|++||++........
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSW---SPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEE---CSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEE---CCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 99555666999999999999999999988888876554 3566666 56666 6999999999999999832210000
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceee
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
. ... .............+|...|.+++|+|++++|++++.|+.|++||+.+++.. ...
T Consensus 226 ~-------~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~ 283 (408)
T 4a11_B 226 L-------DQH----------NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT-----LVN 283 (408)
T ss_dssp C-------CTT----------TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC-----CCC
T ss_pred c-------ccc----------ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc-----eec
Confidence 0 000 000011112223579999999999999999999999999999999986531 111
Q ss_pred eceeeecc-CcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 300 GSSVLYGH-NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 300 ~~~~~~~h-~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
........ .......... +..++.++.|+.|++||+ +++++..+.+|.+ +|++++|+|++++|++++.||.|++|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 284 YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 00000011 1111122222 567788889999999999 8899999999998 799999999999999999999999999
Q ss_pred cCC
Q 001391 377 FQA 379 (1088)
Q Consensus 377 ~~~ 379 (1088)
+..
T Consensus 363 ~~~ 365 (408)
T 4a11_B 363 PSL 365 (408)
T ss_dssp ECC
T ss_pred CCC
Confidence 964
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=288.52 Aligned_cols=296 Identities=14% Similarity=0.155 Sum_probs=223.4
Q ss_pred eeeeeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCC---CeeEE-EEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEA---GTLIR-PFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~t---g~~~~-~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.++|++++|+ | + +++|++|+ |++|+|||+.+ +.... .+...+...|.+++|+ |+++ .
T Consensus 62 h~~~V~~~~~s--~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~---~ 125 (437)
T 3gre_A 62 EPNSITSSAVS--PGE----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI-------PNFD---A 125 (437)
T ss_dssp TTSCEEEEEEE--CSS----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC-------TTSS---E
T ss_pred CCCceEEEEEC--CCC----CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEe-------CCCC---E
Confidence 56899999999 9 8 88999988 79999999877 44221 2221234479999999 6662 5
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeecc--C--CCCcEEEEEE--ecccCCCCEEEEEEcCCcEEEEE
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--R--LSHWVFDVCF--LKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~--h~~~I~~v~f--~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
+++++.|++|++||++.... +.. ........+..+. . +...+.++.+ +| ++.+|++|+.|+.|++||
T Consensus 126 l~s~s~dg~i~vwd~~~~~~-~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQ-ESE---VKFLNCECIRKINLKNFGKNEYAVRMRAFVNE---EKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEE-TTE---EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS---SCEEEEEEETTSEEEEEE
T ss_pred EEEEeCCCEEEEEEeccccC-Cce---eeccccceeEEEEccCcccccCceEEEEEEcC---CCCEEEEEeCCCeEEEEe
Confidence 55556699999999962110 000 0000011222221 2 5677888884 46 889999999999999999
Q ss_pred cCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 164 ISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 164 ~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
+.+++.+..+..+ ....+.++++ ++++.+|++|+.||.|++||++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~---s~~~~~l~s~~~dg~i~iwd~~------------------------------- 244 (437)
T 3gre_A 199 IRTLERLQIIENSPRHGAVSSICI---DEECCVLILGTTRGIIDIWDIR------------------------------- 244 (437)
T ss_dssp TTTCCEEEEEECCGGGCCEEEEEE---CTTSCEEEEEETTSCEEEEETT-------------------------------
T ss_pred CCCCeeeEEEccCCCCCceEEEEE---CCCCCEEEEEcCCCeEEEEEcC-------------------------------
Confidence 9999999988864 4456777777 6789999999999999999998
Q ss_pred ccceeeeEEEe-CCCCCEEEEEEcC----CCCEEEEEECCCcEEEEEcCCCcccCCCCceeee-----------------
Q 001391 243 QHTAVNLFRLV-GHEGSIFRIEWSS----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG----------------- 300 (1088)
Q Consensus 243 ~~~~~~~~~~~-gh~~~V~~v~~sp----~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~----------------- 300 (1088)
.+..+..+. +|...|.+++|+| ++.++++++.|+.|++||+.+++.. ..+.
T Consensus 245 --~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 245 --FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ-----YAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp --TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE-----EEEESSSSCCCGGGGSCBCSS
T ss_pred --CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE-----EEEEcCCCCCccceecccccc
Confidence 667777776 8888999996654 6789999999999999999876531 1110
Q ss_pred --ceeeec--cCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc-----------------------------
Q 001391 301 --SSVLYG--HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE----------------------------- 345 (1088)
Q Consensus 301 --~~~~~~--h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~----------------------------- 345 (1088)
...+.+ |...|++++|+ +.+|++|+.|+.|++||+ +++.+..+.+
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTST 397 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccc
Confidence 001233 78889999998 568999999999999999 6666666654
Q ss_pred --------cCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEE
Q 001391 346 --------HIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 346 --------h~~~~V~~l~~~~d--g~~l~tg~~Dg~I~iwd 376 (1088)
|.. .|.+++++++ +.+|++|+.||.|++|+
T Consensus 398 ~~~~~~~~h~~-~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 398 HSVDDSLYHHD-IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---------CC-CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCccccccc-ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666 7999999988 77999999999999995
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=263.02 Aligned_cols=254 Identities=17% Similarity=0.247 Sum_probs=198.3
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
..+.+|.+ .|.+++|+ |+|+ .+++++.|++|+||++.... .+++..+.+|.+.|++
T Consensus 3 ~~~~~h~~-~V~~~~~s-------~~g~---~las~s~D~~v~iw~~~~~~-------------~~~~~~l~gH~~~V~~ 58 (297)
T 2pm7_B 3 VIANAHNE-MIHDAVMD-------YYGK---RMATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEGPVWR 58 (297)
T ss_dssp EECCSCSS-CEEEEEEC-------TTSS---EEEEEETTSCEEEEEBCSSC-------------BCCCEEECCCSSCEEE
T ss_pred eeccCCcC-ceEEEEEC-------CCCC---EEEEEeCCCEEEEEecCCCC-------------cEEEEEEccccCCeEE
Confidence 34556655 79999999 7873 44455569999999997432 4567888999999999
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCC--CcEEEEEecCCeEEEEEeccC
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
++|+|. .++++|++|+.|++|++||+.+++ .+..+..+.. .+.++++ +|+ +.+|++|+.|+.|++||+++.
T Consensus 59 v~~s~~-~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-~v~~v~~---~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 59 VDWAHP-KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA-SVNSVQW---APHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp EEECCG-GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS-CEEEEEE---CCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred EEecCC-CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC-ceeEEEe---CcCCCCcEEEEEECCCcEEEEEecCC
Confidence 999861 137899999999999999998774 4445544433 4667776 454 789999999999999999711
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-------------CCEEEEEECCCcE
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-------------GSKLVSVSDDRSA 280 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-------------g~~l~s~s~Dg~v 280 (1088)
.......+.+|...|.+++|+|+ +++|++++.|++|
T Consensus 134 -------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v 182 (297)
T 2pm7_B 134 -------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (297)
T ss_dssp -------------------------------SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCE
T ss_pred -------------------------------CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE
Confidence 01123567899999999999997 5799999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-----CEEEEEeCCCcEEEEcCCC-c---eeEEE--cccCCC
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGSDG-K---QLKMI--KEHIGR 349 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-----~~l~sg~~Dg~i~vWd~~~-~---~~~~~--~~h~~~ 349 (1088)
++||+.+... ..... ..+.+|...|.+++|++ .+|++++.|++|++||+.. . ....+ ..|..
T Consensus 183 ~lwd~~~~~~----~~~~~--~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~- 255 (297)
T 2pm7_B 183 KIWKYNSDAQ----TYVLE--STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD- 255 (297)
T ss_dssp EEEEEETTTT----EEEEE--EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS-
T ss_pred EEEEEcCCCc----eEEEE--EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC-
Confidence 9999987532 01122 27789999999999984 5899999999999999832 1 12233 45666
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|++++|+|++++|++++.||.|++|+..
T Consensus 256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 69999999999999999999999999984
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=269.75 Aligned_cols=305 Identities=14% Similarity=0.212 Sum_probs=230.6
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec--cCCCCc
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHW 134 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~ 134 (1088)
+..+...+...|.+++|+|.. +++. ..++++++++.|++|++.... ....+... ..|...
T Consensus 10 ~~~~~~~h~~~v~~i~~~p~~----~~~~--~~~~~~~~~~~v~vw~~~~~~------------~~~~~~~~~~~~~~~~ 71 (366)
T 3k26_A 10 VNSLKEDHNQPLFGVQFNWHS----KEGD--PLVFATVGSNRVTLYECHSQG------------EIRLLQSYVDADADEN 71 (366)
T ss_dssp EEEEECTTCSCEEEEEECTTC----CTTS--CEEEEEEETTEEEEEEECGGG------------CEEEEEEEECSCTTCC
T ss_pred EEEeecCCCCceEEEEEeccc----CCCC--ceEEEECCCCEEEEEEcCCCc------------EEEeeeeccccCCCCc
Confidence 334443344589999999420 1221 257777778999999998533 12222222 237788
Q ss_pred EEEEEEecccCC----CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEE
Q 001391 135 VFDVCFLKVCNG----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 135 I~~v~f~p~~~d----~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd 209 (1088)
|.+++|+| + +.+|++|+.||.|++||+.+++.+..+..+.. .+.++++ ++ ++.+|++|+.||.|++||
T Consensus 72 v~~~~~~~---~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~---~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 72 FYTCAWTY---DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-AINELKF---HPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp EEEEEEEE---CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-CEEEEEE---CSSCTTEEEEEETTSCEEEEE
T ss_pred EEEEEecc---CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-cEEEEEE---CCCCCCEEEEEeCCCeEEEEE
Confidence 99999999 6 67999999999999999999999888876544 4667776 56 789999999999999999
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
+. .++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 145 ~~---------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 145 IQ---------------------------------TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp TT---------------------------------TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred ee---------------------------------cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 98 56677777 6899999999999999999999999999999998
Q ss_pred CCcccCCC---------------C-----ceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCc-------
Q 001391 287 AEYWKDSD---------------S-----IEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGK------- 338 (1088)
Q Consensus 287 ~~~~~~~~---------------~-----~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~------- 338 (1088)
+++..... . ...+ ....+|...|.+++|++.++++++.|+.|++||+ .++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 192 SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF--STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE--EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred CCccccccceeEEecCCCCcccccceeeccCcc--ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccc
Confidence 75431000 0 0001 1334599999999999999999999999999998 432
Q ss_pred -------eeEEEcccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCc
Q 001391 339 -------QLKMIKEHIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (1088)
Q Consensus 339 -------~~~~~~~h~~~~V~~l~~~~d--g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1088)
.+..+..|.. .|++++|+|+ +++|++|+.||.|++||+.......
T Consensus 270 ~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------- 323 (366)
T 3k26_A 270 PSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------------------------- 323 (366)
T ss_dssp TTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-------------------------
T ss_pred cCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-------------------------
Confidence 3677888888 6999999999 9999999999999999996431100
Q ss_pred cceeeccCC--CCceEEEEeccCCeEE-EEecCCeEEEEEe
Q 001391 410 EQIRLTDSK--SEYVRCLHLTSEDTLY-IATNHGYLYHTKL 447 (1088)
Q Consensus 410 ~~~~~~~~~--~~~V~~l~~s~~~~ll-~~t~~g~i~~~~~ 447 (1088)
.....+..+ ...|++++|+|++.++ +++.+|.+..|++
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 324 AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 011122333 5789999999998655 4567888886654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-27 Score=270.57 Aligned_cols=274 Identities=14% Similarity=0.207 Sum_probs=223.1
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v 99 (1088)
+.+++|+ ++ .+++++.|+.|+|||+.+++....+...+...|.+++|+ |+++ .+++++.|+.|
T Consensus 96 ~~~~~~s--~~-----~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s-------~~~~---~l~~~~~dg~i 158 (401)
T 4aez_A 96 LNLLDWS--NL-----NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWS-------HDGS---FLSVGLGNGLV 158 (401)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC-------TTSS---EEEEEETTSCE
T ss_pred EEEEeec--CC-----CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC-------CCCC---EEEEECCCCeE
Confidence 5567777 53 566667799999999999999888887556689999999 7773 55555669999
Q ss_pred EEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-CceEEEeccCCc
Q 001391 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVHSPER 178 (1088)
Q Consensus 100 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~~~~~~~~~~~ 178 (1088)
++||+.. .+.+..+.+|...|.+++|++ .+|++|+.|+.|++||+.. ...+..+..+..
T Consensus 159 ~iwd~~~---------------~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 159 DIYDVES---------------QTKLRTMAGHQARVGCLSWNR-----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp EEEETTT---------------CCEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEEECcC---------------CeEEEEecCCCCceEEEEECC-----CEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999974 456778889999999999954 6999999999999999984 555666655543
Q ss_pred eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC
Q 001391 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 258 (1088)
.+.++.+ ++++.+|++|+.||.|++||+. ....+..+.+|...
T Consensus 219 -~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~---------------------------------~~~~~~~~~~~~~~ 261 (401)
T 4aez_A 219 -EVCGLAW---RSDGLQLASGGNDNVVQIWDAR---------------------------------SSIPKFTKTNHNAA 261 (401)
T ss_dssp -CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------CSSEEEEECCCSSC
T ss_pred -CeeEEEE---cCCCCEEEEEeCCCeEEEccCC---------------------------------CCCccEEecCCcce
Confidence 4666766 5789999999999999999998 66778888899999
Q ss_pred EEEEEEcCCCC-EEEEEE--CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE--eCCCcEE
Q 001391 259 IFRIEWSSCGS-KLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA--GEDCTCR 331 (1088)
Q Consensus 259 V~~v~~sp~g~-~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg--~~Dg~i~ 331 (1088)
|.+++|+|++. .+++++ .|+.|++||+.+++. + ....|...|.+++|+ +.+++++ +.||.|+
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--------~---~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--------V---NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--------E---EEEECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--------E---EEEeCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 99999999775 556655 699999999988533 3 233467789999998 5788884 4899999
Q ss_pred EEcC-CCcee--EEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 332 VWGS-DGKQL--KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~~~~~--~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|++ +++.. ..+.+|.+ .|.+++|+|++.+|++++.||.|++|++..
T Consensus 331 v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEETTEEEEEEEEECCSS-CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEecCCccceeEEEecCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999 54443 34678887 699999999999999999999999999954
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=278.64 Aligned_cols=269 Identities=19% Similarity=0.292 Sum_probs=226.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+...|.|++|. +++|++|+ |+.|++||+.+++.+..+.+|.+ .|.+++|. .. .+++++
T Consensus 132 ~~~~v~~~~~d--------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~-------~~-----~l~sg~ 190 (435)
T 1p22_A 132 TSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYD-------ER-----VIITGS 190 (435)
T ss_dssp SCCCEEEEECC--------SSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEECC-------SS-----EEEEEE
T ss_pred CCCcEEEEEEC--------CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC-cEEEEEEC-------CC-----EEEEEc
Confidence 44668888876 67888887 79999999999999999998776 79999885 32 566667
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE---E
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII---L 171 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~---~ 171 (1088)
.|++|++||+.. .+.+..+.+|...|.+++|++ ..|++|+.|+.|++||+.++... .
T Consensus 191 ~dg~i~vwd~~~---------------~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~ 250 (435)
T 1p22_A 191 SDSTVRVWDVNT---------------GEMLNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRR 250 (435)
T ss_dssp TTSCEEEEESSS---------------CCEEEEECCCCSCEEEEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred CCCeEEEEECCC---------------CcEEEEEcCCCCcEEEEEEcC-----CEEEEeeCCCcEEEEeCCCCCCceeee
Confidence 799999999985 456778889999999999965 58999999999999999987654 3
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
.+..+. ..+.++.+ ++..+++|+.||.|++||+. ++..+..
T Consensus 251 ~~~~~~-~~v~~~~~-----~~~~l~s~~~dg~i~vwd~~---------------------------------~~~~~~~ 291 (435)
T 1p22_A 251 VLVGHR-AAVNVVDF-----DDKYIVSASGDRTIKVWNTS---------------------------------TCEFVRT 291 (435)
T ss_dssp EECCCS-SCEEEEEE-----ETTEEEEEETTSEEEEEETT---------------------------------TCCEEEE
T ss_pred EecCCC-CcEEEEEe-----CCCEEEEEeCCCeEEEEECC---------------------------------cCcEEEE
Confidence 344443 34556654 57899999999999999998 6778888
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEE
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~ 331 (1088)
+.+|...|.++.| +++++++++.|+.|++||+.++ +.+. .+.+|...|.+++|.+.+|++|+.||.|+
T Consensus 292 ~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~--------~~~~--~~~~h~~~v~~~~~~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 292 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG--------ACLR--VLEGHEELVRCIRFDNKRIVSGAYDGKIK 359 (435)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------CEEE--EECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC--------CEEE--EEeCCcCcEEEEEecCCEEEEEeCCCcEE
Confidence 9999999999999 4689999999999999999985 3343 77889999999999999999999999999
Q ss_pred EEcC-CCc---------eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 332 VWGS-DGK---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~~~---------~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+||+ .++ .+..+.+|.+ +|.+++| ++.+|++|+.||.|++||+..
T Consensus 360 vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 360 VWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 9998 333 7888999998 7999999 678899999999999999954
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=284.49 Aligned_cols=323 Identities=9% Similarity=0.023 Sum_probs=229.1
Q ss_pred CceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 14 g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.+....|.+|+|+ || |+++|+++ |++|+ |...++.+ .+|.. .|++++|+ |+|
T Consensus 12 ~~~~~~v~sv~~S--pD----G~~iASas~D~TV~--d~~~~~~l---~gh~~-~v~~V~Fs-------Pdg-------- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWA--RD----GTLYLTTFPDISIG--QPKYAKDI---NCNSK-NLFHVKEF-------PLE-------- 64 (588)
T ss_dssp CCCSSSSCCEEEC--TT----SCEEEECSSSEEEE--EECCCSCC---SSBGG-GTEEEEEE-------CCC--------
T ss_pred hHhhccEEEEEEC--CC----CCEEEEEcCCceee--ccccccee---cCCCc-cEEEEEEC-------CCC--------
Confidence 3456789999999 99 99999988 79999 87666654 56666 79999999 663
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
.++.+.+|+.+. .....+ +|.+.|.+++|+| +|++||+++.||.|++||..+ ++..
T Consensus 65 --~~~~~~~~~~~~----------------~~~~~~-~~~~~V~~vawSP---dG~~LAs~s~dg~V~iwd~~~--~l~~ 120 (588)
T 2j04_A 65 --FENKLDFELAQQ----------------NGLLNS-QPVCYPRVCKPSP---IDDWMAVLSNNGNVSVFKDNK--MLTN 120 (588)
T ss_dssp --CCCTTTTSCCCS----------------SCSSTT-SCSCCEEEEEECS---SSSCEEEEETTSCEEEEETTE--EEEE
T ss_pred --CcceEEEEeCCC----------------ceEeec-CCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCc--eeee
Confidence 244444444321 112222 4588999999999 999999999999999999644 5555
Q ss_pred eccCCc----eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 173 VHSPER----CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 173 ~~~~~~----~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
+. +.. ..+.+++| +|++.+||+|+.||+|++||+.++.... ...-.
T Consensus 121 l~-~~~~~~~~sv~svaf---SPDG~~LAsgs~DGtVkIWd~~~~~l~~--------------------------~~~i~ 170 (588)
T 2j04_A 121 LD-SKGNLSSRTYHCFEW---NPIESSIVVGNEDGELQFFSIRKNSENT--------------------------PEFYF 170 (588)
T ss_dssp CC-CSSCSTTTCEEEEEE---CSSSSCEEEEETTSEEEEEECCCCTTTC--------------------------CCCEE
T ss_pred cc-CCCccccccEEEEEE---cCCCCEEEEEcCCCEEEEEECCCCcccc--------------------------cccee
Confidence 55 332 13566776 8999999999999999999998211000 00013
Q ss_pred eEEE----eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee-eccCcceEEEEECCCEEEE
Q 001391 249 LFRL----VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLTDSFIIT 323 (1088)
Q Consensus 249 ~~~~----~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~~h~~~I~~v~~~~~~l~s 323 (1088)
+..+ .+|.++|.+++|+|+| +++++.|++|++||+..+.. .+... .+ .+|...|++++|++..|++
T Consensus 171 l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-----~~~~~--tL~~~h~~~V~svaFsg~~LAS 241 (588)
T 2j04_A 171 ESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-----QPVSR--MIQNASRRKITDLKIVDYKVVL 241 (588)
T ss_dssp EEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-----CCCEE--EEECCCSSCCCCEEEETTEEEE
T ss_pred eeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-----cccee--eecccccCcEEEEEEECCEEEE
Confidence 5565 6788999999999999 88999999999999988643 11122 45 4788999999999889999
Q ss_pred EeCCCcEEEEcCCCceeEEEc-ccCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccC-CCcc
Q 001391 324 AGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFN-GRTE 399 (1088)
Q Consensus 324 g~~Dg~i~vWd~~~~~~~~~~-~h~~~~V~~l~~--~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 399 (1088)
++ +++|++||..+.....+. +|.. .|+.++| +|++..|++++.||+ ++|..+. ++ +.......++. ....
T Consensus 242 a~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~edG~-klw~~d~--~~-~spd~~l~a~~d~~v~ 315 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--LH-VTADNIIAPYLEKKFK 315 (588)
T ss_dssp EC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSSCEE-EEEESSS--EE-EECCCSSHHHHHHHHH
T ss_pred Ee-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--EE-ECCCceEEEEcCCEEE
Confidence 97 699999999666654444 7887 7999999 999999999999999 9999852 11 11111111100 0000
Q ss_pred eEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
+|.. .......+.+ ...|.+++|+|+|++++..
T Consensus 316 lW~~----~g~~l~~~~~-~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 316 KWST----IWNEFNNYET-TLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp HTTT----TTTSSSSSCC-EEEEEEEEECTTSSEEEEE
T ss_pred EEEC----CCCceeeecc-ceEEEEEEECCCCCEEEEE
Confidence 1100 0011112222 4569999999999888764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=261.48 Aligned_cols=254 Identities=17% Similarity=0.169 Sum_probs=195.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC--CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t--g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|.+++|+ |+ +++||+|+ |++|+|||+.+ ++++.++.+|.+ .|.+++|++. .+++ .+++
T Consensus 8 h~~~V~~~~~s--~~----g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~-----~~g~---~l~s 72 (297)
T 2pm7_B 8 HNEMIHDAVMD--YY----GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-----KFGT---ILAS 72 (297)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCG-----GGCS---EEEE
T ss_pred CcCceEEEEEC--CC----CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCC-----CcCC---EEEE
Confidence 56899999999 99 89999988 79999999974 467888998777 7999999832 2342 4445
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCce-
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
++.|++|+|||++... ...+..+.+|...|.+++|+| + +.+|++|+.|++|++||+.++..
T Consensus 73 ~s~D~~v~iWd~~~~~-------------~~~~~~~~~h~~~v~~v~~~p---~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp EETTTEEEEEEBSSSC-------------BCCCEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred EcCCCEEEEEEcCCCc-------------eEEEEEeecCCCceeEEEeCc---CCCCcEEEEEECCCcEEEEEecCCCce
Confidence 5569999999998542 345566788999999999999 6 78999999999999999987632
Q ss_pred -EEEeccCCceeEEEEeeecCC----------CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 170 -ILEVHSPERCLLYSMKLWGDN----------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~s----------~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
...+..+. ..+.++++.+.. +++.+|++|+.|+.|++||+.+.+
T Consensus 137 ~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~------------------------ 191 (297)
T 2pm7_B 137 SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------------------ 191 (297)
T ss_dssp CCEEEECCS-SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT------------------------
T ss_pred eeeeeeccc-CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC------------------------
Confidence 23333333 345666663321 135799999999999999997110
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCCC---CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g---~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
........+.+|.+.|.+++|+|++ .+|++++.|++|++||+..... ..........+|...|++++
T Consensus 192 -----~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~-----~~~~~~~~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 192 -----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRAS 261 (297)
T ss_dssp -----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-----CCEEEESSSSCCSSCEEEEE
T ss_pred -----ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC-----ccceeeeecccCCCcEEEEE
Confidence 0123566788999999999999985 7999999999999999987421 01111012257888999999
Q ss_pred EC--CCEEEEEeCCCcEEEEcC
Q 001391 316 LT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 316 ~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
|+ +.+|++++.|++|++|+.
T Consensus 262 ~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 262 WSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp ECSSSCCEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEEE
Confidence 98 689999999999999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=268.76 Aligned_cols=312 Identities=10% Similarity=0.090 Sum_probs=233.4
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
..+.+|.+ .|.+++|+ |+ .+++++.|+.|+||++..... ....+.+..+.+|...|.+
T Consensus 10 ~~~~~h~~-~i~~~~~~-------~~-----~l~s~~~dg~i~iw~~~~~~~---------~~~~~~~~~~~~h~~~v~~ 67 (397)
T 1sq9_A 10 NAGKAHDA-DIFSVSAC-------NS-----FTVSCSGDGYLKVWDNKLLDN---------ENPKDKSYSHFVHKSGLHH 67 (397)
T ss_dssp EESSCSSS-CEEEEEEC-------SS-----EEEEEETTSEEEEEESBCCTT---------CCGGGGEEEEECCTTCEEE
T ss_pred hhhhhhhc-CeEEEEec-------CC-----eEEEEcCCCEEEEEECCCccc---------ccCCCcceEEecCCCcEEE
Confidence 34455555 79999999 52 777778899999999985431 0113467788899999999
Q ss_pred EEEecccCC----C---CEEEEEEcCCcEEEEEcCCCce-----EEEeccCC----ceeEEEEeeecCC-CCCcE-EEEE
Q 001391 138 VCFLKVCNG----N---RSLAIGCSDNSIRVWDISNSSI-----ILEVHSPE----RCLLYSMKLWGDN-LEALR-IASG 199 (1088)
Q Consensus 138 v~f~p~~~d----~---~~lasgs~Dg~V~iWd~~~~~~-----~~~~~~~~----~~~~~s~~~~~~s-~~~~~-l~sg 199 (1088)
++|+| + + .+|++++.|+.|++||+.+++. ...+..+. ...+.++.+.... +++.. |+++
T Consensus 68 ~~~~~---~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 68 VDVLQ---AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp EEEEE---EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred EEEec---ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 99999 8 8 9999999999999999998886 77776663 4567777773111 67888 9999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE-----EE-------eCCCCCEEEEEEcCC
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF-----RL-------VGHEGSIFRIEWSSC 267 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~gh~~~V~~v~~sp~ 267 (1088)
+.||.|++||+.+..... ....+. .+ ..|...|.+++|+|+
T Consensus 145 ~~dg~i~iwd~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 197 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADES---------------------------NSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 197 (397)
T ss_dssp ETTSCEEEEEEESSSSHH---------------------------HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT
T ss_pred eCCCcEEEEeCCcccccc---------------------------ccceeeccCcceeeeeeccccCCCCCceEEEECCC
Confidence 999999999998300000 012222 44 458999999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec---c---CcceEEEEEC--CCEEEEEeCC---CcEEEEcC-
Q 001391 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG---H---NARVWDCCLT--DSFIITAGED---CTCRVWGS- 335 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~---h---~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~- 335 (1088)
+ ++++++.|+.|++||+.+. +.+. .+.. | ...|.+++|+ +.+|++++.| |.|++||+
T Consensus 198 ~-~l~~~~~dg~i~i~d~~~~--------~~~~--~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 198 G-LIATGFNNGTVQISELSTL--------RPLY--NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp S-EEEEECTTSEEEEEETTTT--------EEEE--EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred c-eEEEEeCCCcEEEEECCCC--------ceeE--EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 9 9999999999999999875 3333 5566 8 8999999998 6899999999 99999999
Q ss_pred CCceeEEEcc-------------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCccc------CCccccccC
Q 001391 336 DGKQLKMIKE-------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE------SHPEAKEFN 395 (1088)
Q Consensus 336 ~~~~~~~~~~-------------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~------~~~~~~~~~ 395 (1088)
+++.+..+.. |.. .|.+++|+|++++|++++.||.|++||+.. +.+..+. +|...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---- 341 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED---- 341 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG----
T ss_pred CCcccceeccCcccccccccccccCC-cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh----
Confidence 7888899988 887 799999999999999999999999999954 2222222 11000
Q ss_pred CCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-----------eEEEEecCCeEEEEEec
Q 001391 396 GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-----------TLYIATNHGYLYHTKLC 448 (1088)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-----------~ll~~t~~g~i~~~~~~ 448 (1088)
...+.......|...|++++|+|++ .+++++.+|.|..|++.
T Consensus 342 -----------~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 342 -----------ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp -----------CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred -----------hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 0000011112346789999999996 56666788988866653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-27 Score=267.09 Aligned_cols=292 Identities=13% Similarity=0.113 Sum_probs=231.9
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~ 206 (1088)
..|.+.|.+++|+| ++++|++|+.|+.|++||+.+++ .+..+..+.. .+.++++ ++++.+|++++.||.|+
T Consensus 5 ~~~~~~i~~~~~s~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~---~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 5 SFLVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDW---APDSNRIVTCGTDRNAY 77 (372)
T ss_dssp ESCSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEE---ETTTTEEEEEETTSCEE
T ss_pred cccCCCeEEEEECC---CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEE---eCCCCEEEEEcCCCeEE
Confidence 45889999999999 99999999999999999999987 6777765544 4666766 46889999999999999
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee--eeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV--NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+||+. ... ....+.+|...|.+++|+|+++++++++.|+.|++||
T Consensus 78 vwd~~---------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d 124 (372)
T 1k8k_C 78 VWTLK---------------------------------GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124 (372)
T ss_dssp EEEEE---------------------------------TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred EEECC---------------------------------CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99998 333 3334468999999999999999999999999999999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-------------------CCceeEEE
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-------------------DGKQLKMI 343 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-------------------~~~~~~~~ 343 (1088)
+..... ..... ....+|...|.+++|+ +.+|++++.||.|++||+ .++.+..+
T Consensus 125 ~~~~~~-----~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 125 FEQEND-----WWVCK-HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp EETTTT-----EEEEE-EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred ecCCCc-----ceeee-eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 988642 12222 2446789999999998 579999999999999995 46788888
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceE
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 423 (1088)
..|.. .|.+++|+|++++|++++.||.|++||+.... .+..+..+...|.
T Consensus 199 ~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 199 SSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKM-----------------------------AVATLASETLPLL 248 (372)
T ss_dssp CCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-----------------------------EEEEEECSSCCEE
T ss_pred CCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------------------eeEEEccCCCCeE
Confidence 88888 79999999999999999999999999995321 1122234456799
Q ss_pred EEEeccCCeEEEEecCCeEEEEEeccCCcceeE--------------------------------------EeeeecCCc
Q 001391 424 CLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN--------------------------------------KILQVSEGM 465 (1088)
Q Consensus 424 ~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~ 465 (1088)
+++|+|++.+++++.++.+..|++.... ..|. ......+..
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 327 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDSAA-GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 327 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEETTT-TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccCcC-ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC
Confidence 9999999999999999999987776510 1111 111113356
Q ss_pred ceEEEecCCCCCCCcCCCC---CeEEEecCCCCEEEEEEcCC
Q 001391 466 PIICMDLLSNEPKYPCGID---DWVALGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 466 ~i~~l~~~~~~~~~s~~~~---~~la~g~~dg~I~iw~~~~~ 504 (1088)
+|.++++.+ +++ .++++|+.||.|++|++.+.
T Consensus 328 ~v~~~~~~~-------~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 328 SVSQISVLS-------GGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp CEEEEEEEE-------STTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred CcceeEEec-------CCCcceeeEEEecCCCceEEEEecCh
Confidence 788887643 233 79999999999999999764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=283.86 Aligned_cols=286 Identities=14% Similarity=0.187 Sum_probs=206.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEE--EeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP--FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~--~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|...|+||+|+ |. ...+||+|+ ||+|+|||+.+++.... +.+|.+ .|.+++|+|. +++ .+++
T Consensus 118 ~~~~V~~l~~~--P~---~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~-~V~~l~f~p~------~~~---~l~s 182 (435)
T 4e54_B 118 FDRRATSLAWH--PT---HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPL------NTN---QFYA 182 (435)
T ss_dssp CSSCEEEEEEC--SS---CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC-CCCEEEECSS------CTT---EEEE
T ss_pred CCCCEEEEEEe--CC---CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC-CEEEEEEeCC------CCC---EEEE
Confidence 45679999999 95 257899988 79999999988765443 445555 7999999942 441 4444
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
++.|++|+|||++... .........+..++.+++|+| ++.+|++|+.||.|++||+.. +.+..
T Consensus 183 ~s~D~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~~g~~dg~i~~wd~~~-~~~~~ 245 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNI-------------LRVFASSDTINIWFCSLDVSA---SSRMVVTGDNVGNVILLNMDG-KELWN 245 (435)
T ss_dssp ECSSSCEEEEETTSCE-------------EEEEECCSSCSCCCCCEEEET---TTTEEEEECSSSBEEEEESSS-CBCCC
T ss_pred EeCCCEEEEeeccCCc-------------eeEEeccCCCCccEEEEEECC---CCCEEEEEeCCCcEeeeccCc-ceeEE
Confidence 4559999999987432 233334445566889999999 999999999999999999864 44555
Q ss_pred eccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
+..+.. .+.++++ +|++ .++++|+.|+.|++||+++.+. ...+..
T Consensus 246 ~~~h~~-~v~~v~~---~p~~~~~~~s~s~d~~v~iwd~~~~~~------------------------------~~~~~~ 291 (435)
T 4e54_B 246 LRMHKK-KVTHVAL---NPCCDWFLATASVDQTVKIWDLRQVRG------------------------------KASFLY 291 (435)
T ss_dssp SBCCSS-CEEEEEE---CTTCSSEEEEEETTSBCCEEETTTCCS------------------------------SSCCSB
T ss_pred Eecccc-eEEeeee---cCCCceEEEEecCcceeeEEecccccc------------------------------cceEEE
Confidence 555543 4667776 4454 4888999999999999982211 112223
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc------ceEEEEEC--CCEEEE
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------RVWDCCLT--DSFIIT 323 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~------~I~~v~~~--~~~l~s 323 (1088)
..+|...|.+++|+|++++|++++.|+.|++||+.++.. .. .+.+|.. .+..+.|+ +..+++
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC-----PL-----GLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS-----EE-----EECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc-----ce-----EEecccccccccceeEEEEEcCCCCEEEE
Confidence 457999999999999999999999999999999988643 11 2222211 12223333 233333
Q ss_pred E------------eCCCcEEEEcC-CCceeEEEcc-cCCCCeEEE-EEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 324 A------------GEDCTCRVWGS-DGKQLKMIKE-HIGRGIWRC-LYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 324 g------------~~Dg~i~vWd~-~~~~~~~~~~-h~~~~V~~l-~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ ..++.|++||. +++.+..+.. |.. .|.++ +|+|+|.+|++|+ |+.|+||+++.
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~-~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS-GISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC-CCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC-cEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 3 34568999999 7888888754 554 78887 6999999999876 88999999854
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=280.04 Aligned_cols=248 Identities=11% Similarity=0.052 Sum_probs=191.7
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC--ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEE
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~v 207 (1088)
.|.+.|++++|+| ++++|++|+.|+.|++||+.++ +.+..+..+.. .+.++++ ++++.+|++++.|+.|++
T Consensus 9 ~~~~~v~~~~~s~---~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~---s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 9 ILPKPSYEHAFNS---QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDW---APKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp ECSSCCSCCEECS---SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEE---CTTTCCEEEEETTSSEEE
T ss_pred cCCCcEEEEEECC---CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEE---eCCCCEEEEEeCCCeEEE
Confidence 4667899999999 9999999999999999999988 56666665544 4667776 678899999999999999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
||+.+.+ .......+.+|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 82 wd~~~~~------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 131 (377)
T 3dwl_C 82 YEKRPDG------------------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ 131 (377)
T ss_dssp C------------------------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--
T ss_pred EEcCCCC------------------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC
Confidence 9998110 0125667788999999999999999999999999999999988
Q ss_pred CcccCCCCceeeeceeeec-cCcceEEEEEC--CCEEEEEeCCCcEEEEcCC-------------------CceeEEEcc
Q 001391 288 EYWKDSDSIEEVGSSVLYG-HNARVWDCCLT--DSFIITAGEDCTCRVWGSD-------------------GKQLKMIKE 345 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~-h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-------------------~~~~~~~~~ 345 (1088)
.+. ..... .+.+ |...|.+++|+ +.+|++++.|++|++||+. ++++..+ .
T Consensus 132 ~~~-----~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 203 (377)
T 3dwl_C 132 END-----WWVSK--HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P 203 (377)
T ss_dssp --------CCCCE--EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred ccc-----ceeee--EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence 532 11232 5556 99999999998 5799999999999999973 3455556 7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE
Q 001391 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (1088)
Q Consensus 346 h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 425 (1088)
|.+ .|.+++|+|++++|++++.||.|++||+...... ...+..+..|...|.++
T Consensus 204 ~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------~~~~~~~~~~~~~v~~~ 257 (377)
T 3dwl_C 204 SGG-WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP-------------------------PRALITVKLSQLPLRSL 257 (377)
T ss_dssp CSS-SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC-------------------------EEECCCEECSSSCEEEE
T ss_pred CCc-eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc-------------------------ceeeEeecCCCCceEEE
Confidence 877 7999999999999999999999999999643110 00022234456789999
Q ss_pred EeccCCeEEEEecCCeEEEEEec
Q 001391 426 HLTSEDTLYIATNHGYLYHTKLC 448 (1088)
Q Consensus 426 ~~s~~~~ll~~t~~g~i~~~~~~ 448 (1088)
+|+|++.+++++.++.+..|...
T Consensus 258 ~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEETTEEEEEESSSSEEEECCC
T ss_pred EEcCCCCEEEEEcCCcEEEEEeC
Confidence 99999999999888887765443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=267.44 Aligned_cols=260 Identities=17% Similarity=0.145 Sum_probs=192.0
Q ss_pred EEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCc
Q 001391 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 8 iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~ 84 (1088)
+....-..|.++|++++|+ |+ +++||+|+ |++|+|||+.+++ ++..+.+|.+ .|.+++|++. .++
T Consensus 4 ~~~~~~~~H~~~V~~v~~s--~~----g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~V~~v~~~~~-----~~~ 71 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMD--YY----GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAWAHP-----MYG 71 (316)
T ss_dssp ----------CCEEEEEEC--GG----GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-CEEEEEECCG-----GGS
T ss_pred eeeeecccccCeEEEeeEc--CC----CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-cEEEEEeCCC-----CCC
Confidence 3333334578999999999 99 89999988 7999999998875 5677888776 7999999831 134
Q ss_pred cceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEE
Q 001391 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVW 162 (1088)
Q Consensus 85 ~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iW 162 (1088)
+ .+++++.|++|+|||++... .+....+.+|...|.+++|+| + +.+|++|+.|++|++|
T Consensus 72 ~---~l~s~s~D~~v~iWd~~~~~-------------~~~~~~~~~h~~~V~~v~~~p---~~~g~~lasgs~D~~i~lw 132 (316)
T 3bg1_A 72 N---ILASCSYDRKVIIWREENGT-------------WEKSHEHAGHDSSVNSVCWAP---HDYGLILACGSSDGAISLL 132 (316)
T ss_dssp S---CEEEEETTSCEEEECCSSSC-------------CCEEEEECCCSSCCCEEEECC---TTTCSCEEEECSSSCEEEE
T ss_pred C---EEEEEECCCEEEEEECCCCc-------------ceEEEEccCCCCceEEEEECC---CCCCcEEEEEcCCCCEEEE
Confidence 2 55555669999999987532 345667889999999999999 6 7899999999999999
Q ss_pred EcCCCceE---EEeccCCceeEEEEeeecCC--------------CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 163 DISNSSII---LEVHSPERCLLYSMKLWGDN--------------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 163 d~~~~~~~---~~~~~~~~~~~~s~~~~~~s--------------~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
|+..+... ..+..+. ..+.++.+.+.. .++.+|++|+.|+.|++||+...
T Consensus 133 d~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~------------ 199 (316)
T 3bg1_A 133 TYTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED------------ 199 (316)
T ss_dssp EECSSSCEEECCBTTSSS-SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT------------
T ss_pred ecCCCCCcceeeeecccc-CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC------------
Confidence 99876322 2222222 223333332211 12468999999999999998710
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC----CEEEEEECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
.....+..+.+|.+.|.+++|+|++ .+|++++.|++|++|++.+... .....
T Consensus 200 ------------------~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~-----~~~~~- 255 (316)
T 3bg1_A 200 ------------------GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS-----NTWSP- 255 (316)
T ss_dssp ------------------SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC-----CCCBC-
T ss_pred ------------------CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc-----cchhh-
Confidence 0124566788999999999999986 8899999999999999976321 01111
Q ss_pred eeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 302 SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
..+.+|...|++++|+ +.+|++++.|++|++|+.
T Consensus 256 ~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 256 KLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp CEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred hhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 1456788999999998 679999999999999997
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=279.55 Aligned_cols=296 Identities=13% Similarity=0.154 Sum_probs=215.9
Q ss_pred eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 56 ~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
.......|.. +|.+++|+|. ++ .+||+ +.|++|+|||+.... ......+.+|.+.
T Consensus 111 ~~~~~~~~~~-~V~~l~~~P~------~~----~~lasGs~dg~i~lWd~~~~~-------------~~~~~~~~gH~~~ 166 (435)
T 4e54_B 111 ILQKAAPFDR-RATSLAWHPT------HP----STVAVGSKGGDIMLWNFGIKD-------------KPTFIKGIGAGGS 166 (435)
T ss_dssp SCCEEEECSS-CEEEEEECSS------CT----TCEEEEETTSCEEEECSSCCS-------------CCEEECCCSSSCC
T ss_pred ecccCCCCCC-CEEEEEEeCC------CC----CEEEEEeCCCEEEEEECCCCC-------------ceeEEEccCCCCC
Confidence 3445555555 7999999942 33 45555 559999999998644 3455667899999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
|++|+|+| .++.+|++|+.|++|++||++++........+. ...+.++.+ ++++.+|++|+.||.|++||+.
T Consensus 167 V~~l~f~p--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~g~~dg~i~~wd~~-- 239 (435)
T 4e54_B 167 ITGLKFNP--LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV---SASSRMVVTGDNVGNVILLNMD-- 239 (435)
T ss_dssp CCEEEECS--SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEE---ETTTTEEEEECSSSBEEEEESS--
T ss_pred EEEEEEeC--CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEE---CCCCCEEEEEeCCCcEeeeccC--
Confidence 99999998 257899999999999999998765433332222 222334444 5789999999999999999987
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
++.+..+.+|...|.+++|+|+++ ++++++.|++|++||+.+.+.
T Consensus 240 --------------------------------~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-- 285 (435)
T 4e54_B 240 --------------------------------GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG-- 285 (435)
T ss_dssp --------------------------------SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS--
T ss_pred --------------------------------cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc--
Confidence 234556789999999999999886 788999999999999987643
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCC-----CeEEEEEcCCCCEEE
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLSSLLV 364 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~-----~V~~l~~~~dg~~l~ 364 (1088)
...+. ...+|...|++++|+ +.+|++++.||+|++||+ +++....+..|... .+....++|++.+++
T Consensus 286 ---~~~~~--~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (435)
T 4e54_B 286 ---KASFL--YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360 (435)
T ss_dssp ---SSCCS--BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEE
T ss_pred ---cceEE--EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEE
Confidence 22222 557899999999998 689999999999999999 67777776655431 233556777777776
Q ss_pred EEe------------CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE-EeccCC
Q 001391 365 TAG------------FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL-HLTSED 431 (1088)
Q Consensus 365 tg~------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~~s~~~ 431 (1088)
+++ .++.|++||.....+ + ......|...|.++ +|+|++
T Consensus 361 ~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~-----------------~-----------~~l~~~~~~~v~s~~~fspdg 412 (435)
T 4e54_B 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKM-----------------M-----------CQLYDPESSGISSLNEFNPMG 412 (435)
T ss_dssp EECCCCTTSCCSSTTCCCCEEEECSSSCCE-----------------E-----------EEECCSSCCCCCCEEEECTTS
T ss_pred EEEcCCCCeEEEEecCCCEEEEEECCCCcE-----------------E-----------EEEeCCCCCcEEEEEEECCCC
Confidence 664 235788888743110 0 11122345567776 699999
Q ss_pred eEEEEecCCeEEEEEeccCCc
Q 001391 432 TLYIATNHGYLYHTKLCDMDS 452 (1088)
Q Consensus 432 ~ll~~t~~g~i~~~~~~~~~~ 452 (1088)
.+++++.++.|. +|+...
T Consensus 413 ~~lasg~d~~i~---iW~~~~ 430 (435)
T 4e54_B 413 DTLASAMGYHIL---IWSQQE 430 (435)
T ss_dssp SCEEEECSSEEE---ECCCC-
T ss_pred CEEEEEcCCcEE---EEECCc
Confidence 999998888887 555443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=263.51 Aligned_cols=313 Identities=12% Similarity=0.142 Sum_probs=227.8
Q ss_pred eeEEE-EeeeCCcceEEEEecccccccCCCccceeeEEEEE----CCCEEEEEEeccCCCCCCCCCCccccccceeeecc
Q 001391 55 TLIRP-FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP 129 (1088)
Q Consensus 55 ~~~~~-~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~ 129 (1088)
+.+.. +.+|.. .|.+++|+ |++. .+++++ +|+.|+||++.... ..... ..
T Consensus 8 ~~~~~~~~~h~~-~v~~~~~~-------p~~~---~l~~~~s~~~~d~~v~iw~~~~~~-------------~~~~~-~~ 62 (357)
T 3i2n_A 8 QIIAHIQKGFNY-TVFDCKWV-------PCSA---KFVTMGNFARGTGVIQLYEIQHGD-------------LKLLR-EI 62 (357)
T ss_dssp CEEEEEEEECSS-CEEEEEEC-------TTSS---EEEEEEC--CCCEEEEEEEECSSS-------------EEEEE-EE
T ss_pred HHhhhhccCCCC-ceEEEEEc-------CCCc---eEEEecCccCCCcEEEEEeCCCCc-------------cccee-ee
Confidence 34433 445444 89999999 7663 555555 38999999998543 22222 23
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-eEEEeccCCceeEEEEeee---cCCCCCcEEEEEecCCeE
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLW---GDNLEALRIASGTIYNEI 205 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~s~~~~---~~s~~~~~l~sg~~dg~I 205 (1088)
+|...|.+++|+|...++.+|++|+.|+.|++||+.+++ .+..+..+.. .+.++.+. ..++++.+|++++.||.|
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 789999999999911117999999999999999999887 7777765544 35566554 347889999999999999
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee-eeEEEeCCCC----CEEEEE----EcCCCCEEEEEEC
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEG----SIFRIE----WSSCGSKLVSVSD 276 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~----~V~~v~----~sp~g~~l~s~s~ 276 (1088)
++||+. ... .+..+..|.+ .|.+++ |+|+++++++++.
T Consensus 142 ~vwd~~---------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 188 (357)
T 3i2n_A 142 KVWDPR---------------------------------QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD 188 (357)
T ss_dssp EEECTT---------------------------------SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET
T ss_pred EEEeCC---------------------------------CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc
Confidence 999998 333 5666665554 799998 7889999999999
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-----CEEEEEeCCCcEEEEcC-CCceeEE-----Ecc
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGKQLKM-----IKE 345 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-----~~l~sg~~Dg~i~vWd~-~~~~~~~-----~~~ 345 (1088)
|+.|++||+.+.+. . ....|...|.+++|++ .++++++.||.|++||+ .++.+.. +..
T Consensus 189 d~~i~i~d~~~~~~--------~---~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 189 NGDIKLFDLRNMAL--------R---WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp TSEEEEEETTTTEE--------E---EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred CCeEEEEECccCce--------e---eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 99999999988532 2 5577889999999974 79999999999999998 4443333 347
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCCCCCC-cccCCccccccCCCcceEEeeeCCCccceeeccCCCCceE
Q 001391 346 HIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPG-SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (1088)
Q Consensus 346 h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 423 (1088)
|.. .|++++|+|++. +|++++.||.|++||+...... .......... .......+..+..|...|+
T Consensus 258 ~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 258 HKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG-----------VAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp CSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC-----------CCCEEEEEEEEECCSSCEE
T ss_pred CcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc-----------cccccceeeccccCCCCee
Confidence 887 799999999998 8999999999999999532111 1100000000 0011123445566788999
Q ss_pred EEEeccCCeEEE--EecCCeEEEEEecc
Q 001391 424 CLHLTSEDTLYI--ATNHGYLYHTKLCD 449 (1088)
Q Consensus 424 ~l~~s~~~~ll~--~t~~g~i~~~~~~~ 449 (1088)
+++|+|++.+++ ++.+|.+..|++..
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 999999986554 67789898776543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-26 Score=264.20 Aligned_cols=303 Identities=14% Similarity=0.098 Sum_probs=226.7
Q ss_pred cceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEecc-CCceeEEEEeeecCCC-CCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNL-EALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~~-~~~~~~~s~~~~~~s~-~~~~l~s 198 (1088)
.+....+.+|.+.|.+++|+| ++ ++|++|+.|+.|++||+.+++....+.. .....+.++++ ++ ++.+|++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~~l~s 136 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHP---THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKF---NQFNTNQLFV 136 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECS---SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEE---ETTEEEEEEE
T ss_pred cceEEeccCCCCCEEEEEECC---CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEe---CCCCCCEEEE
Confidence 566778899999999999999 88 8999999999999999998888777653 34455777777 45 6789999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe---CCCCCEEEEEEcCCCCEEEEEE
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
++.|+.|++||+. . ..+..+. +|...|.+++|+|+++++++++
T Consensus 137 ~~~d~~i~iwd~~---------------------------------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 137 SSIRGATTLRDFS---------------------------------G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTTEEEEEETT---------------------------------S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred EeCCCEEEEEECC---------------------------------C-CceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 9999999999997 2 2333343 4558899999999999999999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC-C----CceeEEEcccC
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-D----GKQLKMIKEHI 347 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~-~----~~~~~~~~~h~ 347 (1088)
.|+.|++||++. +.+. .+.+|...|.+++|+ +. +|++++.|++|++||+ . +..+..+ .|.
T Consensus 183 ~d~~i~i~d~~~---------~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~ 250 (383)
T 3ei3_B 183 STGRLLLLGLDG---------HEIF--KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE 250 (383)
T ss_dssp TTSEEEEEETTS---------CEEE--EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS
T ss_pred CCCCEEEEECCC---------CEEE--EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC
Confidence 999999999953 2333 778899999999999 34 8999999999999999 4 4556666 677
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE
Q 001391 348 GRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (1088)
Q Consensus 348 ~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 425 (1088)
. .|++++|+| ++.+|++++.|+.|++||+.. .....+.++.....- ....+...-.....+..+
T Consensus 251 ~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~p~~~~~~~ 316 (383)
T 3ei3_B 251 K-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ-------------HLTPIKATWHPMYDLIVA 316 (383)
T ss_dssp S-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT-------------TSCCCCCEECSSSSEEEE
T ss_pred C-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc-------------cccceEEeccCCCCceEE
Confidence 7 799999999 999999999999999999954 333444333211000 000000000112356678
Q ss_pred EeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 426 ~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
+++|++++ +++.+|.+..|++.. .+....+.++ +...+.++++.+ ++.+|++|+ ||.|++|++++
T Consensus 317 ~~s~dg~~-s~s~d~~i~iwd~~~---~~~~~~l~~~~~~~~~~~~~~s~--------~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 317 GRYPDDQL-LLNDKRTIDIYDANS---GGLVHQLRDPNAAGIISLNKFSP--------TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBCCTTT-CTTCCCCEEEEETTT---CCEEEEECBTTBCSCCCEEEECT--------TSSEEEEEE-TTEEEEEECC-
T ss_pred EecCCccc-ccCCCCeEEEEecCC---CceeeeecCCCCCceEEEEEEec--------CccEEEEec-CCcEEEEecCC
Confidence 88888888 777889898666543 3322334443 244555557754 448999997 99999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=250.89 Aligned_cols=286 Identities=14% Similarity=0.192 Sum_probs=229.5
Q ss_pred ECCCC-eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec
Q 001391 50 DLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1088)
Q Consensus 50 d~~tg-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l 128 (1088)
|..++ +.++.+.+|.+ .|.+++| + .+. .+++++.|+.|++||+.. .+....+
T Consensus 3 d~~~~~~~~~~l~~h~~-~v~~~~~-~------~~~----~l~s~~~dg~v~vw~~~~---------------~~~~~~~ 55 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQ-DVRDVVA-V------DDS----KVASVSRDGTVRLWSKDD---------------QWLGTVV 55 (313)
T ss_dssp --CCCCEEEEEECCCSS-CEEEEEE-E------ETT----EEEEEETTSEEEEEEESS---------------SEEEEEE
T ss_pred CccccHHHHHHhhCCCC-CcEEEEe-c------CCC----EEEEEEcCCcEEEEECCC---------------CEEEEEe
Confidence 44444 67788888776 7999999 3 332 566666799999999974 3566777
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC---ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~---~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I 205 (1088)
..|...|.+++|+| ++++|++|+.|+.|++|++... +.+..+..+.. .+.++.+ ++..+++++.||.|
T Consensus 56 ~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-----~~~~l~~~~~d~~i 126 (313)
T 3odt_A 56 YTGQGFLNSVCYDS---EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF-----QDGVVISGSWDKTA 126 (313)
T ss_dssp EECSSCEEEEEEET---TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE-----ETTEEEEEETTSEE
T ss_pred ecCCccEEEEEECC---CCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc-CEEEEEe-----cCCEEEEEeCCCCE
Confidence 88999999999999 9999999999999999998764 44555554443 4556665 46799999999999
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEE
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd 284 (1088)
++||. ......+..|...|.++.|.| ++.++++++.|+.|++||
T Consensus 127 ~~~d~-----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 127 KVWKE-----------------------------------GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp EEEET-----------------------------------TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEcC-----------------------------------CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 99993 345667889999999999988 999999999999999999
Q ss_pred cCCCcccCCCCceeeeceeeec-cCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~-h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
... ... .+.. |...|.+++|+ +..+++++.||.|++||+ +++.+..+..|.+ +|.+++|+|++
T Consensus 172 ~~~----------~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~- 237 (313)
T 3odt_A 172 NDK----------VIK--TFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHES-FVYCIKLLPNG- 237 (313)
T ss_dssp TTE----------EEE--EECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTS-
T ss_pred cCc----------eEE--EEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCc-eEEEEEEecCC-
Confidence 433 222 4445 88999999998 556999999999999999 7889999999988 79999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCe
Q 001391 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~ 441 (1088)
.|++++.||.|++||+.... ....+..+...|.+++|+|++.+++++.+|.
T Consensus 238 ~l~~~~~dg~v~iwd~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~ 288 (313)
T 3odt_A 238 DIVSCGEDRTVRIWSKENGS-----------------------------LKQVITLPAISIWSVDCMSNGDIIVGSSDNL 288 (313)
T ss_dssp CEEEEETTSEEEEECTTTCC-----------------------------EEEEEECSSSCEEEEEECTTSCEEEEETTSC
T ss_pred CEEEEecCCEEEEEECCCCc-----------------------------eeEEEeccCceEEEEEEccCCCEEEEeCCCc
Confidence 58999999999999985321 1112233456799999999999999999999
Q ss_pred EEEEEecc
Q 001391 442 LYHTKLCD 449 (1088)
Q Consensus 442 i~~~~~~~ 449 (1088)
+..|++..
T Consensus 289 i~iw~~~~ 296 (313)
T 3odt_A 289 VRIFSQEK 296 (313)
T ss_dssp EEEEESCG
T ss_pred EEEEeCCC
Confidence 99766544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-25 Score=253.21 Aligned_cols=298 Identities=13% Similarity=0.166 Sum_probs=234.5
Q ss_pred eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE
Q 001391 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (1088)
Q Consensus 56 ~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I 135 (1088)
....+.+|.+ .|.+++|+ |+++ .+++++.|+.|++||+.. .+.+..+.+|...|
T Consensus 24 ~~~~l~~h~~-~v~~~~~s-------~~~~---~l~~~~~dg~i~vwd~~~---------------~~~~~~~~~h~~~v 77 (369)
T 3zwl_B 24 KAIKLTGHER-PLTQVKYN-------KEGD---LLFSCSKDSSASVWYSLN---------------GERLGTLDGHTGTI 77 (369)
T ss_dssp EEEEEECCSS-CEEEEEEC-------TTSC---EEEEEESSSCEEEEETTT---------------CCEEEEECCCSSCE
T ss_pred ccEEEEEeec-eEEEEEEc-------CCCC---EEEEEeCCCEEEEEeCCC---------------chhhhhhhhcCCcE
Confidence 3455777666 79999999 7772 444455699999999874 45778888999999
Q ss_pred EEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC-----CeEEEEEe
Q 001391 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKV 210 (1088)
Q Consensus 136 ~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d-----g~I~vwd~ 210 (1088)
.+++|+| ++++|++++.|+.|++||+.+++.+..+... ..+.++.+ ++++..+++++.+ |.|.+||+
T Consensus 78 ~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~---~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 78 WSIDVDC---FTKYCVTGSADYSIKLWDVSNGQCVATWKSP--VPVKRVEF---SPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp EEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECS--SCEEEEEE---CTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred EEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCeEEEEE---ccCCCEEEEecCCccCCCCEEEEEEe
Confidence 9999999 9999999999999999999999988887733 34566666 6789999999998 99999999
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC--CEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~--~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
......... .. .....+..+..|.+ .+.+++|+|+++++++++.|+.|++||+.+.
T Consensus 150 ~~~~~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 150 ERDSATHEL------------------TK----VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp EECTTTCCE------------------EE----ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred cCCccceee------------------cc----cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 833221100 00 02235566777877 9999999999999999999999999999873
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEE
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~t 365 (1088)
. +.+. .+..|...|.+++|+ +.+|++++.|+.|++||+ +++.+..+. +.. ++.+++|+|+++++++
T Consensus 208 ~-------~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 208 Y-------EYVD--SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC-PLNTAVITPLKEFIIL 276 (369)
T ss_dssp T-------EEEE--EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS-CEEEEEECSSSSEEEE
T ss_pred c-------EeEE--EEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC-CceeEEecCCCceEEE
Confidence 1 3333 777899999999998 679999999999999999 677777777 444 6999999999999999
Q ss_pred EeCCC--------------CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC
Q 001391 366 AGFDS--------------AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1088)
Q Consensus 366 g~~Dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 431 (1088)
++.++ .+++||.... .....+..|...|++++|+|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFE-----------------------------EEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp EECCC-------------CEEEEEETTTC-----------------------------CEEEEEECCSSCEEEEEECTTS
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCC-----------------------------cchhheecccCcEEEEEECCCC
Confidence 99998 5666665321 1233345567789999999998
Q ss_pred eEEE-EecCCeEEEEEecc
Q 001391 432 TLYI-ATNHGYLYHTKLCD 449 (1088)
Q Consensus 432 ~ll~-~t~~g~i~~~~~~~ 449 (1088)
.+++ ++.+|.+..|++..
T Consensus 328 ~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SEEEEEETTSEEEEEEECH
T ss_pred CEEEEEcCCCeEEEEECcc
Confidence 6555 56788888776643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=265.53 Aligned_cols=297 Identities=9% Similarity=0.057 Sum_probs=206.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCC-------cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEe---
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDDR-------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG--- 325 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~Dg-------~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~--- 325 (1088)
..+|++++|+||+++|++|+.|. .|++|++..................+.+|...|.++++.+..+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 45899999999999999998654 59999997654310000112222356788899999999988888764
Q ss_pred --------CCCcEEEEcC-CC-ceeEE---Ec-----ccCCCCeEEEEEcCCCCEEEEE--eCCCCEEEEEcCCCCCCcc
Q 001391 326 --------EDCTCRVWGS-DG-KQLKM---IK-----EHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQAFLPGSL 385 (1088)
Q Consensus 326 --------~Dg~i~vWd~-~~-~~~~~---~~-----~h~~~~V~~l~~~~dg~~l~tg--~~Dg~I~iwd~~~~~~~~~ 385 (1088)
.|+++|+|++ .. ..+.. .. .+.. .+..++|+|||++|+++ +.|++|++||+....
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~---- 168 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADD-YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT---- 168 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTC-CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE----
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCccc-CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc----
Confidence 5778999998 22 22222 11 1222 48899999999987654 478999999985421
Q ss_pred cCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCc
Q 001391 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGM 465 (1088)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 465 (1088)
.+..+ .+...|++++|+|++++++++.++.+..+......... ......+..
T Consensus 169 -------------~~~~~-------------~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~--~~~~~~~~~ 220 (365)
T 4h5i_A 169 -------------EKFEI-------------ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA--RKTDFDKNW 220 (365)
T ss_dssp -------------EEEEE-------------ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE--EECCCCTTE
T ss_pred -------------EEEEe-------------CCCCceEEEEEccCCceEEeccceeEEEEEeccCccee--eeecCCCCC
Confidence 11111 13456999999999999998888887765443332211 122233456
Q ss_pred ceEEEecCCCCCCCcCCCCCeEEEecCCC----CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEE
Q 001391 466 PIICMDLLSNEPKYPCGIDDWVALGDGKG----NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (1088)
Q Consensus 466 ~i~~l~~~~~~~~~s~~~~~~la~g~~dg----~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~ 541 (1088)
.+.++++.++ +..+++++.|+ .+++|++......... .. ....+...+.. ++++|+|++|++|
T Consensus 221 ~v~~v~fspd--------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~--~~-~~~~~~~~V~~--~~~Spdg~~lasg 287 (365)
T 4h5i_A 221 SLSKINFIAD--------DTVLIAASLKKGKGIVLTKISIKSGNTSVLR--SK-QVTNRFKGITS--MDVDMKGELAVLA 287 (365)
T ss_dssp EEEEEEEEET--------TEEEEEEEESSSCCEEEEEEEEETTEEEEEE--EE-EEESSCSCEEE--EEECTTSCEEEEE
T ss_pred CEEEEEEcCC--------CCEEEEEecCCcceeEEeecccccceeccee--ee-eecCCCCCeEe--EEECCCCCceEEE
Confidence 7888888554 48888888777 5777887654321111 11 11122222333 5799999999999
Q ss_pred CCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 542 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
+.|+.|+|||+... .+...+..+|...|++++|||||++||+||.|++|+||+++.+
T Consensus 288 s~D~~V~iwd~~~~--------------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 288 SNDNSIALVKLKDL--------------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ETTSCEEEEETTTT--------------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cCCCEEEEEECCCC--------------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999854 2334555689999999999999999999999999999999764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=266.69 Aligned_cols=252 Identities=16% Similarity=0.180 Sum_probs=193.4
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
+.+|.+ .|.+++|+ |+|+ .+++++.|++|+|||+.... ..++..+.+|.+.|++++
T Consensus 9 ~~~H~~-~V~~v~~s-------~~g~---~lasgs~D~~v~lwd~~~~~-------------~~~~~~l~gH~~~V~~v~ 64 (316)
T 3bg1_A 9 DTSHED-MIHDAQMD-------YYGT---RLATCSSDRSVKIFDVRNGG-------------QILIADLRGHEGPVWQVA 64 (316)
T ss_dssp -----C-CEEEEEEC-------GGGC---EEEEEETTTEEEEEEEETTE-------------EEEEEEEECCSSCEEEEE
T ss_pred cccccC-eEEEeeEc-------CCCC---EEEEEeCCCeEEEEEecCCC-------------cEEEEEEcCCCccEEEEE
Confidence 345555 79999999 7773 44444569999999998532 345778899999999999
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCC--CcEEEEEecCCeEEEEEeccCcc
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVDWEHV 215 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~I~vwd~~~~~~ 215 (1088)
|+|. .++++|++|+.|++|++||+.+++ ....+..+.. .+.++++ +|+ +.+|++|+.|+.|++||+....
T Consensus 65 ~~~~-~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-~V~~v~~---~p~~~g~~lasgs~D~~i~lwd~~~~~- 138 (316)
T 3bg1_A 65 WAHP-MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS-SVNSVCW---APHDYGLILACGSSDGAISLLTYTGEG- 138 (316)
T ss_dssp ECCG-GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS-CCCEEEE---CCTTTCSCEEEECSSSCEEEEEECSSS-
T ss_pred eCCC-CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC-ceEEEEE---CCCCCCcEEEEEcCCCCEEEEecCCCC-
Confidence 9861 137899999999999999998874 4555555543 3556666 344 7899999999999999997110
Q ss_pred ccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-----------------CCEEEEEECCC
Q 001391 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----------------GSKLVSVSDDR 278 (1088)
Q Consensus 216 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-----------------g~~l~s~s~Dg 278 (1088)
.......+.+|...|.+++|+|+ +++|++++.|+
T Consensus 139 -----------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~ 189 (316)
T 3bg1_A 139 -----------------------------QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN 189 (316)
T ss_dssp -----------------------------CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS
T ss_pred -----------------------------CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC
Confidence 01123345689999999999997 47899999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC------CEEEEEeCCCcEEEEcCCC----c-eeEEEcccC
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG----K-QLKMIKEHI 347 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~------~~l~sg~~Dg~i~vWd~~~----~-~~~~~~~h~ 347 (1088)
+|++||+..... .+.+. .+.+|...|.+++|++ .+|++++.|++|++|++.. + ....+..|.
T Consensus 190 ~v~lWd~~~~~~-----~~~~~--~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 262 (316)
T 3bg1_A 190 LIKLWKEEEDGQ-----WKEEQ--KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN 262 (316)
T ss_dssp BCCEEEECTTSC-----EEEEE--CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS
T ss_pred eEEEEEeCCCCc-----cceee--ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC
Confidence 999999975321 12333 6789999999999983 5899999999999999832 1 234456677
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+ .|++++|+|++++|++++.|++|++|+..
T Consensus 263 ~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 263 D-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp S-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred C-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7 79999999999999999999999999974
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=261.73 Aligned_cols=298 Identities=13% Similarity=0.114 Sum_probs=210.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
|.++|++++|+ |+ +++|++|+ |+.|+|||+.++ +.+..+..|.. .|.+++|+|. .+++ .+
T Consensus 10 H~~~v~~~~~~--~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-----~d~~---~l 74 (351)
T 3f3f_A 10 HDDLVHDVVYD--FY----GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-SIVAIDWASP-----EYGR---II 74 (351)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-CEEEEEECCG-----GGCS---EE
T ss_pred cccceeEEEEc--CC----CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-cEEEEEEcCC-----CCCC---EE
Confidence 67899999999 99 88999988 799999999876 56677777666 7999999931 1452 45
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCc
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
++++.|+.|++||+........ ....+.+..+.+|...|.+++|+| + +.+|++++.|+.|++||+.+++
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECS------GRRWNKLCTLNDSKGSLYSVKFAP---AHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTS------SCSEEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTCEEEEEECSSTT
T ss_pred EEEcCCCeEEEEecCCCccccc------ccCcceeeeecccCCceeEEEEcC---CCCCcEEEEecCCCcEEEecCCChH
Confidence 5556699999999986431110 011366788889999999999999 8 9999999999999999998876
Q ss_pred eEEEec------------cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCce
Q 001391 169 IILEVH------------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1088)
Q Consensus 169 ~~~~~~------------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1088)
.+..+. ......+.++.+.+...++..+++++.++.+.+|+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~------------------------ 201 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD------------------------ 201 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT------------------------
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC------------------------
Confidence 533221 12233456666643333488999999999998777661
Q ss_pred eEecccccceeeeEEEeCCCCCEEEEEEcCCC----CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 237 ~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
.....+..+.+|...|.+++|+|++ ++|++++.|+.|++||+..... .. ....+...+.
T Consensus 202 -------~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~-----~~~~~~~~~~ 264 (351)
T 3f3f_A 202 -------GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS-----PL-----ASEESLTNSN 264 (351)
T ss_dssp -------SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------
T ss_pred -------CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC-----cc-----ccCCccccee
Confidence 0233467788999999999999998 7999999999999999987533 00 1111111111
Q ss_pred EEEEC------CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 313 DCCLT------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 313 ~v~~~------~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..... ......+.....+.+|+. ..+.+..+.+|.. +|++++|+|++++|++++.||.|++|++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 265 MFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp --------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 11111 122233344555666766 6678888999988 799999999999999999999999999954
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=270.84 Aligned_cols=299 Identities=14% Similarity=0.201 Sum_probs=213.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-----------eEEEEeeeC-----------CcceEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----------LIRPFQVFH-----------GIRLHGIS 72 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-----------~~~~~~~~~-----------~~~V~~i~ 72 (1088)
+.++|++|+|+ |+ +.+||+|+ |+.|+|||+.+++ ++..+.+|. ...|.+++
T Consensus 27 ~~~~V~~v~~s--~~----g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 27 EADIISTVEFN--HS----GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp GGGSEEEEEEC--SS----SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred ccCcEEEEEEC--CC----CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence 56899999999 99 89999988 7999999999877 577888865 13799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCc------------ccc------------ccceeee-
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPE------------TCV------------NLSLVQS- 127 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~------------~~~------------~~~~~~~- 127 (1088)
|+ |++. ...+++++.|++|++|++.........+... ... .......
T Consensus 101 ~~-------~~~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 101 WL-------PQKN-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp EC-------CCCS-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred Ec-------CCCC-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 99 4430 0157777779999999997522100000000 000 0011122
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-CceEEEe------ccCCceeEEEEeeecCCCCC-cEEEEE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEV------HSPERCLLYSMKLWGDNLEA-LRIASG 199 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~~~~~~------~~~~~~~~~s~~~~~~s~~~-~~l~sg 199 (1088)
..+|...|.+++|+| ++++|++| .|+.|++||+.+ ++.+..+ .......+.++++ +|++ .+|++|
T Consensus 173 ~~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~~l~s~ 245 (447)
T 3dw8_B 173 ANAHTYHINSISINS---DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF---HPNSCNTFVYS 245 (447)
T ss_dssp CSCCSSCCCEEEECT---TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE---CSSCTTEEEEE
T ss_pred ccCCCcceEEEEEcC---CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE---CCCCCcEEEEE
Confidence 468999999999999 99999998 799999999984 3344322 1122345677776 5777 899999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC------------CEEEEEEcCC
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG------------SIFRIEWSSC 267 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~------------~V~~v~~sp~ 267 (1088)
+.||.|++||+++.+.. ...+..+.+|.. .|.+++|+|+
T Consensus 246 ~~dg~i~iwd~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALC-----------------------------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS 296 (447)
T ss_dssp ETTSCEEEEETTTCSSS-----------------------------CTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred eCCCeEEEEECcCCccc-----------------------------cceeeEeccCCCccccccccccCceEEEEEECCC
Confidence 99999999999822110 011556666665 9999999999
Q ss_pred CCEEEEEECCCcEEEEEcCC-CcccCCCCceeeeceeeeccCcc---------------eEEEEEC--CCEEEEEeCCCc
Q 001391 268 GSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNAR---------------VWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~i~~~~~~~h~~~---------------I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
+++|++++. +.|++||+.. ++ .+. .+.+|... +..++|+ +.+|++|+.||.
T Consensus 297 g~~l~~~~~-~~v~iwd~~~~~~--------~~~--~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 297 GRYMMTRDY-LSVKVWDLNMENR--------PVE--TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp SSEEEEEES-SEEEEEETTCCSS--------CSC--CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred CCEEEEeeC-CeEEEEeCCCCcc--------ccc--eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 999999999 9999999986 32 222 55556431 3348898 679999999999
Q ss_pred EEEEcC-CCceeEEEcccC--------------------------------CCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 330 CRVWGS-DGKQLKMIKEHI--------------------------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~--------------------------------~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
|++||+ +++.+ .+..|. ...|..++|+|++++|++++.++ +.+|.
T Consensus 366 v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 366 FRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp EEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred EEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 999999 44443 333221 12588999999999999998876 77776
Q ss_pred c
Q 001391 377 F 377 (1088)
Q Consensus 377 ~ 377 (1088)
.
T Consensus 444 ~ 444 (447)
T 3dw8_B 444 D 444 (447)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=261.85 Aligned_cols=281 Identities=16% Similarity=0.261 Sum_probs=225.3
Q ss_pred eEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
+..|+|| ++ .+||++-|++|+|||..++. ...+..+.+|.+.|++|+|+| ++
T Consensus 108 ~~~l~wS-------~~-----n~lAvgld~tV~lWd~~tg~-------------~~~~~~~~~~~~~V~sv~fsp---dg 159 (420)
T 4gga_A 108 LNLVDWS-------SG-----NVLAVALDNSVYLWSASSGD-------------ILQLLQMEQPGEYISSVAWIK---EG 159 (420)
T ss_dssp CBCEEEC-------TT-----SEEEEEETTEEEEEETTTCC-------------EEEEEECCSTTCCEEEEEECT---TS
T ss_pred ceeEEEC-------CC-----CEEEEEeCCEEEEEECCCCC-------------EEEEEEecCCCCcEEEEEECC---CC
Confidence 4557777 54 57888889999999998643 333445668889999999999 99
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
++||+|+.|++|++||+.+++.+..+..+... +.++. .++..+++|+.|+.+++||...
T Consensus 160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~-v~~~s-----~~~~~l~sgs~d~~i~~~d~~~--------------- 218 (420)
T 4gga_A 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-VGSLS-----WNSYILSSGSRSGHIHHHDVRV--------------- 218 (420)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEE-----EETTEEEEEETTSEEEEEETTS---------------
T ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc-eEEEe-----eCCCEEEEEeCCCceeEeeecc---------------
Confidence 99999999999999999999999988876543 34443 3578999999999999999871
Q ss_pred CCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h 307 (1088)
....+..+.+|...+..+.++|+++++++++.|+.+++|+...++.. ...+ .....|
T Consensus 219 -----------------~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----~~~~--~~~~~~ 275 (420)
T 4gga_A 219 -----------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----WVPL--QTFTQH 275 (420)
T ss_dssp -----------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC----SCCS--EEECCC
T ss_pred -----------------cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc----ceee--eeeccc
Confidence 34566778999999999999999999999999999999999876430 1122 267789
Q ss_pred CcceEEEEEC---CCEEEEE--eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEcCC
Q 001391 308 NARVWDCCLT---DSFIITA--GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQA 379 (1088)
Q Consensus 308 ~~~I~~v~~~---~~~l~sg--~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~--~Dg~I~iwd~~~ 379 (1088)
...|.+++|+ +.+++++ +.|++|++||+ +++++..+..|. .+.++.|+++++.+++++ .|+.|++||+..
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 9999999998 3566654 58999999999 788888887765 499999999999888765 799999999853
Q ss_pred CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEE-EEecCCeEEEEEeccCC
Q 001391 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll-~~t~~g~i~~~~~~~~~ 451 (1088)
. ..+..+.+|.+.|.+++|+|++.++ .++.|+.|..|++++..
T Consensus 354 ~-----------------------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 354 M-----------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp C-----------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred C-----------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 1 1123345677899999999998555 45678989988877643
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-26 Score=263.14 Aligned_cols=261 Identities=18% Similarity=0.277 Sum_probs=213.5
Q ss_pred CCCCCceEEecCCCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEE
Q 001391 1 MGKKDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i 71 (1088)
+.|+.|++||+.+++ |.+.|++++|+ |+ +++|++|+ ++.|+|||+.+++.+..+..|.. .|.++
T Consensus 110 ~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s--~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~ 182 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSALAETDESTYVASVKWS--HD----GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA-RVGCL 182 (401)
T ss_dssp EETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEE
T ss_pred ECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC--CC----CCEEEEECCCCeEEEEECcCCeEEEEecCCCC-ceEEE
Confidence 358899999999987 45789999999 99 89999988 79999999999999999998766 79999
Q ss_pred EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
+|+ ++ .+++++.|+.|++||+... ......+.+|...|.+++|+| ++.+|+
T Consensus 183 ~~~-------~~-----~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~ 233 (401)
T 4aez_A 183 SWN-------RH-----VLSSGSRSGAIHHHDVRIA--------------NHQIGTLQGHSSEVCGLAWRS---DGLQLA 233 (401)
T ss_dssp EEE-------TT-----EEEEEETTSEEEEEETTSS--------------SCEEEEEECCSSCEEEEEECT---TSSEEE
T ss_pred EEC-------CC-----EEEEEcCCCCEEEEecccC--------------cceeeEEcCCCCCeeEEEEcC---CCCEEE
Confidence 997 43 6777777999999999853 245677889999999999999 999999
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-CcEEEEEe--cCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~-~~~l~sg~--~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
+|+.|+.|++||+.+++.+..+..+.. .+.++++ +++ ..++++|+ .|+.|++||+.
T Consensus 234 s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~---~p~~~~ll~~~~gs~d~~i~i~d~~----------------- 292 (401)
T 4aez_A 234 SGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAW---CPWQSNLLATGGGTMDKQIHFWNAA----------------- 292 (401)
T ss_dssp EEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEE---CTTSTTEEEEECCTTTCEEEEEETT-----------------
T ss_pred EEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEE---CCCCCCEEEEecCCCCCEEEEEECC-----------------
Confidence 999999999999999998888765543 3556666 343 45777765 89999999998
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
++..+..+. |...|.+++|+|+++++++++ .|+.|++||+.++.. ... ..+.+
T Consensus 293 ----------------~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~------~~~--~~~~~ 347 (401)
T 4aez_A 293 ----------------TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL------TKQ--VDIPA 347 (401)
T ss_dssp ----------------TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE------EEE--EEEEC
T ss_pred ----------------CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc------eeE--EEecC
Confidence 566666665 667899999999999999955 899999999988532 122 25779
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
|...|.+++|+ +.+|++++.||.|++|++ +++.+...
T Consensus 348 h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 348 HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99999999998 679999999999999999 66665544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=261.11 Aligned_cols=281 Identities=17% Similarity=0.240 Sum_probs=217.8
Q ss_pred eeeeeEEEEEeccCCCCC-CCCEEEEEe-CCeEEEEECCC-CeeE-EEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLS-SLPFLLAGS-GSQVLLYDLEA-GTLI-RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~-~~~~laag~-d~~I~vwd~~t-g~~~-~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|.++|++++|+ |+ . .+++|++|+ |+.|+|||+.+ ++.+ ..+..|.. .|.+++|+ |+++ .++
T Consensus 38 h~~~v~~~~~~--~~--~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~ 102 (368)
T 3mmy_A 38 PDDSIGCLSFS--PP--TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWS-------DDGS---KVF 102 (368)
T ss_dssp CSSCEEEEEEC--CT--TSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS-CEEEEEEC-------TTSS---EEE
T ss_pred CCCceEEEEEc--CC--CCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC-CEEEEEEC-------cCCC---EEE
Confidence 67899999999 87 1 037888888 79999999997 5555 66777665 79999999 7763 555
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE--ecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF--LKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f--~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++.|+.|++||+... +.. .+.+|...|.+++| +| ++.+|++++.|+.|++||+.+++.
T Consensus 103 s~~~dg~v~iwd~~~~---------------~~~-~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSN---------------QAI-QIAQHDAPVKTIHWIKAP---NYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEETTSEEEEEETTTT---------------EEE-EEEECSSCEEEEEEEECS---SCEEEEEEETTSEEEEECSSCSSC
T ss_pred EEcCCCcEEEEEcCCC---------------Cce-eeccccCceEEEEEEeCC---CCCEEEEccCCCcEEEEECCCCcE
Confidence 5566999999999853 222 35679999999999 77 889999999999999999999998
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
+..+..+... .++.+ ....+++++.++.+++|++... ....
T Consensus 164 ~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~i~~~~~~~~--------------------------------~~~~ 204 (368)
T 3mmy_A 164 MMVLQLPERC--YCADV-----IYPMAVVATAERGLIVYQLENQ--------------------------------PSEF 204 (368)
T ss_dssp SEEEECSSCE--EEEEE-----ETTEEEEEEGGGCEEEEECSSS--------------------------------CEEE
T ss_pred EEEEecCCCc--eEEEe-----cCCeeEEEeCCCcEEEEEeccc--------------------------------cchh
Confidence 8888776643 33332 2457888999999999999811 1111
Q ss_pred EE-EeCCCCCEEEEEEcCCCCE----EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc------------ceE
Q 001391 250 FR-LVGHEGSIFRIEWSSCGSK----LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------------RVW 312 (1088)
Q Consensus 250 ~~-~~gh~~~V~~v~~sp~g~~----l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~------------~I~ 312 (1088)
.. ...+...+.++.+.++... +++++.|+.|++|++..... ...+ ..+.+|.. .|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-----AKDN--FTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-----HHHS--EEEECSEEC----CCCEEECCEE
T ss_pred hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-----cccc--eeeeeeecccccccccccccceE
Confidence 11 1234455666666555443 99999999999999987532 1222 25556655 799
Q ss_pred EEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 313 DCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 313 ~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++|+ +.+|++++.||.|++||+ +++++..+..|.. +|++++|+|++++|++++.|+..+.|++
T Consensus 278 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 278 GIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCCCeEEEEecccccccccc
Confidence 99998 579999999999999999 7888999999988 7999999999999999999986666554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-26 Score=255.56 Aligned_cols=279 Identities=14% Similarity=0.112 Sum_probs=218.8
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe---eEEEEeeeCCcceEEEEecccccccCCCccceee-
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF- 89 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~---~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~- 89 (1088)
.|.+.|++++|+ |+ +++|++|+ |+.|+|||+.+++ .+..+..|.. .|.+++|+ |++ .
T Consensus 9 ~h~~~v~~~~~s--~~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~----~~ 70 (342)
T 1yfq_A 9 APKDYISDIKII--PS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFI-------DNT----DL 70 (342)
T ss_dssp CCSSCEEEEEEE--GG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-CEEEEEEE-------ESS----SE
T ss_pred CCCCcEEEEEEc--CC----CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC-ceEEEEEC-------CCC----Cc
Confidence 467899999999 98 88999987 7999999998876 3444555554 79999999 666 5
Q ss_pred EEEE-ECCCEEEEEEe-ccCCCCCCCCCCccccccceeeeccC--CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC
Q 001391 90 EVAL-FGEKRVKLFEL-NFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 90 ~la~-~gd~~v~iw~l-~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~ 165 (1088)
++++ +.|+.|++|++ .... ...+.+ |...|.+++|+| +.+|++++.|+.|++||+.
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~----------------~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPS----------------FQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSS----------------EEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHH
T ss_pred EEEEEcCCCeEEEEEeccCCc----------------eEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEccc
Confidence 5555 45999999999 6432 356677 999999999987 5789999999999999998
Q ss_pred C---------CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc-CccccCCCCCCCccCCCCCCCCc
Q 001391 166 N---------SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW-EHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 166 ~---------~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~-~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
+ ++.+..+. ....+.++.+ ++++ +++++.|+.|++||+.+ .
T Consensus 131 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~---~~~~--l~~~~~d~~i~i~d~~~~~---------------------- 181 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK--VKNKIFTMDT---NSSR--LIVGMNNSQVQWFRLPLCE---------------------- 181 (342)
T ss_dssp HHTTBCEEEEESCSSSSS--SCCCEEEEEE---CSSE--EEEEESTTEEEEEESSCCT----------------------
T ss_pred ccccccccccCCeeeEEe--eCCceEEEEe---cCCc--EEEEeCCCeEEEEECCccc----------------------
Confidence 7 65555444 2344667766 3444 99999999999999981 1
Q ss_pred eeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc-----
Q 001391 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA----- 309 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~----- 309 (1088)
..........|...|.+++|+| +++++++++.|+.|++|++..... ....+.. ..+.+|..
T Consensus 182 ---------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 182 ---------DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD--DYNSSKR--FAFRCHRLNLKDT 248 (342)
T ss_dssp ---------TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC--STTCTTC--EEEECCCCCTTCC
T ss_pred ---------cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc--ccccccc--eeeeccccccccc
Confidence 1223334567899999999999 999999999999999999987510 0000112 24555544
Q ss_pred ----ceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEccc-CCCCeEEEEEcCCCCEEEEEeCCCC-EEEEE
Q 001391 310 ----RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSA-IKVHQ 376 (1088)
Q Consensus 310 ----~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~Dg~-I~iwd 376 (1088)
.|.+++|+ +.+|++++.||.|++||+ +++.+..+..| .. +|++++ |++++|++++.||. .+.|.
T Consensus 249 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-CceEec--CCCCeEEEEecCCccccccc
Confidence 99999998 678999999999999999 78889999998 76 799999 99999999999998 55444
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-25 Score=245.64 Aligned_cols=280 Identities=14% Similarity=0.194 Sum_probs=217.7
Q ss_pred eEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
...|+|| ++ .+||++.|++|+|||+++.. ......+.+|...|.+++|+| ++
T Consensus 28 ~~~l~WS-------~~-----~~lAvg~D~tV~iWd~~tg~-------------~~~~~~~~~~~~~V~~v~~~~---~~ 79 (318)
T 4ggc_A 28 LNLVDWS-------SG-----NVLAVALDNSVYLWSASSGD-------------ILQLLQMEQPGEYISSVAWIK---EG 79 (318)
T ss_dssp CBCEEEC-------TT-----SEEEEEETTEEEEEETTTCC-------------EEEEEECCSTTCCEEEEEECT---TS
T ss_pred ceEEEEC-------CC-----CEEEEEeCCEEEEEECCCCC-------------EEEEEEecCCCCeEEEEEECC---CC
Confidence 4678998 66 47788889999999998643 223334567889999999999 99
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
++|++|+.|++|++||+++++.+..+..+.... .+.. .++..+++|+.++.+++|+...
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~-~~~~-----~~~~~l~s~~~~~~~~~~~~~~--------------- 138 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-GSLS-----WNSYILSSGSRSGHIHHHDVRV--------------- 138 (318)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEE-----EETTEEEEEETTSEEEEEETTS---------------
T ss_pred CEEEEEECCCcEEEeecCCceeEEEecCccceE-EEee-----cCCCEEEEEecCCceEeeecCC---------------
Confidence 999999999999999999999998888776543 2332 4577999999999999999871
Q ss_pred CCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h 307 (1088)
....+..+.+|...+..+.++++++++++++.|+.|++||+.+++. ..... .....|
T Consensus 139 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~~ 195 (318)
T 4ggc_A 139 -----------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-----GWVPL-QTFTQH 195 (318)
T ss_dssp -----------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT-----BSCCS-EEECCC
T ss_pred -----------------CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc-----cccce-eeeccc
Confidence 3456677889999999999999999999999999999999988643 11111 256678
Q ss_pred CcceEEEEEC---CCE--EEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEcCCC
Q 001391 308 NARVWDCCLT---DSF--IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQAF 380 (1088)
Q Consensus 308 ~~~I~~v~~~---~~~--l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~--~Dg~I~iwd~~~~ 380 (1088)
...|.++.+. +.. +++++.+++|++|+...........+.. .+..+.++|++..+++++ .|+.|++||+...
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee-eeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 8889999997 233 3567788999999994443434444555 599999999999887655 7999999998532
Q ss_pred CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEecc
Q 001391 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCD 449 (1088)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~ 449 (1088)
..+..+.+|.+.|++++|+|++.+++ ++.||.|..|++.+
T Consensus 275 -----------------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 275 -----------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -----------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -----------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 11233456778899999999986554 56788888776654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-26 Score=265.69 Aligned_cols=255 Identities=18% Similarity=0.321 Sum_probs=212.7
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.||+|++||+.+++ |.++|++++|. +.+|++|+ ||+|+|||+.+++.+..+..|.. .|.+++
T Consensus 150 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~ 220 (435)
T 1p22_A 150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--------ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-AVLHLR 220 (435)
T ss_dssp ESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--------SSEEEEEETTSCEEEEESSSCCEEEEECCCCS-CEEEEE
T ss_pred eCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC--------CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC-cEEEEE
Confidence 468999999999987 67889999986 67888888 79999999999999999998766 799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
|+ ++ .+++++.|+.|++||+.... .......+.+|...|.+++| ++++|++
T Consensus 221 ~~-------~~-----~l~s~s~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~-----~~~~l~s 271 (435)
T 1p22_A 221 FN-------NG-----MMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDF-----DDKYIVS 271 (435)
T ss_dssp CC-------TT-----EEEEEETTSCEEEEECSSSS------------CCEEEEEECCCSSCEEEEEE-----ETTEEEE
T ss_pred Ec-------CC-----EEEEeeCCCcEEEEeCCCCC------------CceeeeEecCCCCcEEEEEe-----CCCEEEE
Confidence 97 43 67777789999999998643 13344677899999999999 5579999
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
|+.|+.|++||+.+++.+..+..+... +.++.+ ++.++++|+.||.|++||+.
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~-----~~~~l~~g~~dg~i~iwd~~--------------------- 324 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRG-IACLQY-----RDRLVVSGSSDNTIRLWDIE--------------------- 324 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSC-EEEEEE-----ETTEEEEEETTSCEEEEETT---------------------
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCc-EEEEEe-----CCCEEEEEeCCCeEEEEECC---------------------
Confidence 999999999999999999888866553 445554 46799999999999999998
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC-CceeeeceeeeccCcce
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-SIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~i~~~~~~~h~~~I 311 (1088)
++..+..+.+|...|.+++| ++.++++++.||.|++||+.+....... ....+. .+.+|...|
T Consensus 325 ------------~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~h~~~v 388 (435)
T 1p22_A 325 ------------CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR--TLVEHSGRV 388 (435)
T ss_dssp ------------TCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE--EECCCSSCC
T ss_pred ------------CCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchhee--eccCCCCCe
Confidence 67788899999999999999 7889999999999999999765321000 011333 778999999
Q ss_pred EEEEECCCEEEEEeCCCcEEEEcCC
Q 001391 312 WDCCLTDSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 312 ~~v~~~~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.+++|.+.+|++++.||+|++||+.
T Consensus 389 ~~l~~~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 389 FRLQFDEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp CCEEECSSCEEECCSSSEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999999999999993
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=261.43 Aligned_cols=366 Identities=17% Similarity=0.166 Sum_probs=233.6
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCC-CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
++.++||++.+++....+..|.+ .|.+++|+ | +++ .+++++.|+.|++|++......... .. ....
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~-~~-~~~~ 88 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIE-------PVEGR---YMLSGGSDGVIVLYDLENSSRQSYY-TC-KAVC 88 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEEC-------TTTCC---EEEEEETTSCEEEEECCCCSSSSCE-EE-CEEE
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEe-------cCCCC---EEEEEcCCCeEEEEECCCCcccceE-ec-cccc
Confidence 45688898888888888887666 79999999 6 662 4445556999999999864311000 00 0000
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
........+|...|.+++|+| .++.+|++++.|+.|++||+.+++....+.... .+..+.+...++++.++++|+.
T Consensus 89 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 89 SIGRDHPDVHRYSVETVQWYP--HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE--TVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp EECTTCTTCCSSCEEEEEECT--TCTTCEEEEETTSEEEEEETTTTEEEEEEECSS--CEEEEEECSSCSSCCEEEEEES
T ss_pred cccccccccCCCcEEEEEEcc--CCCcEEEEEeCCCeEEEeeCCCCccceeccCCC--ceeeeEeecCCCCCcEEEEEcC
Confidence 000112246999999999998 245689999999999999999998887776433 3566777666778889999999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSA 280 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v 280 (1088)
+|.|++||+. .+..+..+.+|.+.|.+++|+|+++ .+++++.|+.|
T Consensus 165 ~~~v~~~d~~---------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i 211 (408)
T 4a11_B 165 GPKVQLCDLK---------------------------------SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRV 211 (408)
T ss_dssp SSSEEEEESS---------------------------------SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCeEEEEeCC---------------------------------CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcE
Confidence 9999999998 6677788899999999999999998 58999999999
Q ss_pred EEEEcCCCcccC-------CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccC---
Q 001391 281 RIWEVRAEYWKD-------SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI--- 347 (1088)
Q Consensus 281 ~iWd~~~~~~~~-------~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~--- 347 (1088)
++||+....... ........ ....+|...|.+++|+ +.+|++++.||.|++||+ +++....+..+.
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 290 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVE-SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN 290 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTT-TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeec-cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccc
Confidence 999998754210 00000011 1336799999999998 579999999999999999 555444332221
Q ss_pred -CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 348 -GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 348 -~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
...+........+..+++++.|+.|++||+.... .+..+..|...|++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-----------------------------QITMLKGHYKTVDCCV 341 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-----------------------------EEEEECCCSSCEEEEE
T ss_pred ccccceeEEecCCCceEEEEecCCEEEEEECcCCc-----------------------------ceeeeccCCCeEEEEE
Confidence 1112222223344567777889999999985321 1223345667899999
Q ss_pred eccCCeEE-EEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 427 LTSEDTLY-IATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 427 ~s~~~~ll-~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
|+|++.++ +++.+|.+..|++....... ..........+ .......+...+.++.+++|+..
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVP-----DDDETTTKSQL---------NPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC-----------------------------------------------------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccC-----CCCceEecccc---------ccccceeecccCccCceeecCCc
Confidence 99998655 45678889977765543221 11100011111 11233556677889999999764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=252.82 Aligned_cols=256 Identities=16% Similarity=0.260 Sum_probs=203.2
Q ss_pred CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 54 g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
|+++..+.+|.+ .|.+++|+ |+++ .+++++.|+.|+||++.... .+.+..+.+|.+
T Consensus 1 G~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~~~~~dg~i~iw~~~~~~-------------~~~~~~~~~h~~ 56 (379)
T 3jrp_A 1 GSMVVIANAHNE-LIHDAVLD-------YYGK---RLATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEG 56 (379)
T ss_dssp ----CCEEECCC-CEEEEEEC-------SSSS---EEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSS
T ss_pred CCccEEecCCcc-cEEEEEEc-------CCCC---EEEEEECCCcEEEEecCCCc-------------ceeeeEecCCCC
Confidence 456778888777 79999999 7772 44444569999999998433 567788899999
Q ss_pred cEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCC--CcEEEEEecCCeEEE
Q 001391 134 WVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIV 207 (1088)
Q Consensus 134 ~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~I~v 207 (1088)
.|++++|+| + +++|++|+.|+.|++||+.+++ .+..+..+. ..+.++++ +++ +.++++++.||.|++
T Consensus 57 ~v~~~~~~~---~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~---~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 57 PVWRVDWAH---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQW---APHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp CEEEEEECC---GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEE---CCGGGCSEEEEEETTSEEEE
T ss_pred cEEEEEeCC---CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC-cceEEEEe---CCCCCCCEEEEecCCCcEEE
Confidence 999999997 5 8999999999999999999987 455554443 34667776 566 889999999999999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-------------CCCEEEEE
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-------------CGSKLVSV 274 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-------------~g~~l~s~ 274 (1088)
||+... .......+.+|...|.+++|+| ++.+++++
T Consensus 130 ~d~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 130 VEFKEN-------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp EECCTT-------------------------------SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred EecCCC-------------------------------CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 999821 1234456779999999999999 69999999
Q ss_pred ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-----CEEEEEeCCCcEEEEcC-CCc---eeEEE--
Q 001391 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGK---QLKMI-- 343 (1088)
Q Consensus 275 s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-----~~l~sg~~Dg~i~vWd~-~~~---~~~~~-- 343 (1088)
+.|+.|++||+..... ..... ..+.+|...|.+++|++ .+|++++.||.|++||+ .+. ....+
T Consensus 179 ~~dg~i~i~d~~~~~~-----~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQ-----TYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp ETTSCEEEEEEETTTT-----EEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred eCCCeEEEEEecCCCc-----ceeeE-EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence 9999999999987543 11122 27788999999999983 58999999999999999 332 22222
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..|.. .|++++|+|++++|++++.||.|++|++.
T Consensus 253 ~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 253 EKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 23666 79999999999999999999999999984
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=249.74 Aligned_cols=254 Identities=17% Similarity=0.173 Sum_probs=200.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC--CCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~--tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|++++|+ |+ +++|++|+ |+.|+|||+. +++.+..+..|.+ .|.+++|++. .+++ .+++
T Consensus 10 h~~~v~~~~~s--~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~-----~~~~---~l~s 74 (379)
T 3jrp_A 10 HNELIHDAVLD--YY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-----KFGT---ILAS 74 (379)
T ss_dssp CCCCEEEEEEC--SS----SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCG-----GGCS---EEEE
T ss_pred CcccEEEEEEc--CC----CCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCC-----CCCC---EEEE
Confidence 67899999999 99 89999987 7999999998 6677788888766 7999999832 2252 5555
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCce-
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
++.|+.|++||+.... ...+..+.+|...|.+++|+| + +.+|++++.|+.|++||+.++..
T Consensus 75 ~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EETTSCEEEEEEETTE-------------EEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred eccCCEEEEEEcCCCc-------------eeEeeeecCCCcceEEEEeCC---CCCCCEEEEecCCCcEEEEecCCCCce
Confidence 5669999999998642 346778889999999999999 8 89999999999999999988743
Q ss_pred -EEEeccCCceeEEEEeeecC----------CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 170 -ILEVHSPERCLLYSMKLWGD----------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~----------s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
...+..+. ..+.++.+.+. .+++.++++|+.||.|++||+++..
T Consensus 139 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------ 193 (379)
T 3jrp_A 139 SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------------------ 193 (379)
T ss_dssp CEEEEECCT-TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT------------------------
T ss_pred eeEEecCCC-CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC------------------------
Confidence 33333333 34566666321 0168899999999999999997211
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCC---CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~---g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
........+.+|...|.+++|+|+ +++|++++.|+.|++||+..... ...........|...|++++
T Consensus 194 -----~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~ 263 (379)
T 3jrp_A 194 -----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRAS 263 (379)
T ss_dssp -----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-----CCEEEESSSSCCSSCEEEEE
T ss_pred -----cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-----cceeeeeccccCCCcEEEEE
Confidence 123456778899999999999999 89999999999999999988532 11111113455889999999
Q ss_pred EC--CCEEEEEeCCCcEEEEcC
Q 001391 316 LT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 316 ~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
|+ +.+|++++.||.|++|++
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEE
T ss_pred EcCCCCEEEEecCCCcEEEEeC
Confidence 98 679999999999999998
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=259.68 Aligned_cols=319 Identities=13% Similarity=0.164 Sum_probs=218.7
Q ss_pred CcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-----------
Q 001391 65 GIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS----------- 132 (1088)
Q Consensus 65 ~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~----------- 132 (1088)
...|.+++|+ |+| .+|++ +.|+.|+||++........ ......+....+.+|.
T Consensus 28 ~~~V~~v~~s-------~~g----~~la~g~~dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 28 ADIISTVEFN-------HSG----ELLATGDKGGRVVIFQQEQENKIQS----HSRGEYNVYSTFQSHEPEFDYLKSLEI 92 (447)
T ss_dssp GGSEEEEEEC-------SSS----SEEEEEETTSEEEEEEECC-----C----CCCCCEEEEEEEECCCCEEEGGGTEEE
T ss_pred cCcEEEEEEC-------CCC----CEEEEEcCCCeEEEEEecCCCCCCc----ccccceeEecccccccccccccccccc
Confidence 3479999999 777 45555 5599999999985431100 0011245677888998
Q ss_pred -CcEEEEEEecccCCC--CEEEEEEcCCcEEEEEcCCCceEE--------------------------------------
Q 001391 133 -HWVFDVCFLKVCNGN--RSLAIGCSDNSIRVWDISNSSIIL-------------------------------------- 171 (1088)
Q Consensus 133 -~~I~~v~f~p~~~d~--~~lasgs~Dg~V~iWd~~~~~~~~-------------------------------------- 171 (1088)
+.|.+++|+| ++ .+|++++.|++|++||+.++....
T Consensus 93 ~~~V~~l~~~~---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
T 3dw8_B 93 EEKINKIRWLP---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169 (447)
T ss_dssp CCCCCEEEECC---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcC---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence 8899999999 77 799999999999999997644321
Q ss_pred -EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 172 -EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 172 -~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.+.......+.++++ ++++.+|++| .|+.|++||+.. ....+.
T Consensus 170 ~~~~~~h~~~v~~~~~---~~~~~~l~s~-~d~~i~iwd~~~--------------------------------~~~~~~ 213 (447)
T 3dw8_B 170 RIFANAHTYHINSISI---NSDYETYLSA-DDLRINLWHLEI--------------------------------TDRSFN 213 (447)
T ss_dssp EEECSCCSSCCCEEEE---CTTSSEEEEE-CSSEEEEEETTE--------------------------------EEEEEE
T ss_pred EEeccCCCcceEEEEE---cCCCCEEEEe-CCCeEEEEECCC--------------------------------CCceee
Confidence 222223334556666 5789999998 799999999971 122222
Q ss_pred -------EEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc------------c
Q 001391 251 -------RLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------------R 310 (1088)
Q Consensus 251 -------~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~------------~ 310 (1088)
.+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.. ...+. .+.+|.. .
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC----DRHSK--LFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp EEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS----CTTCE--EECCC-----CCHHHHHTTC
T ss_pred eeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc----cceee--EeccCCCccccccccccCce
Confidence 245899999999999998 99999999999999999886420 01122 5555654 8
Q ss_pred eEEEEEC--CCEEEEEeCCCcEEEEcC-C-CceeEEEcccCCC-----------C---eEEEEEcCCCCEEEEEeCCCCE
Q 001391 311 VWDCCLT--DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGR-----------G---IWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 311 I~~v~~~--~~~l~sg~~Dg~i~vWd~-~-~~~~~~~~~h~~~-----------~---V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
|.+++|+ +.+|++++. +.|++||+ . ++++..+..|..- . +..++|+|++++|++|+.||.|
T Consensus 288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 9999998 679999998 99999999 4 7888888887530 0 3349999999999999999999
Q ss_pred EEEEcCCCCCCcccCCccccc---cCCCcceEEeeeCCCccceee-ccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 373 KVHQFQAFLPGSLESHPEAKE---FNGRTEIFSIKIPNFSEQIRL-TDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
++||+.+.....++.+..... ......+.. ........... .......|..++|+|++.+++.+..+.++.|
T Consensus 367 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 367 RMFDRNTKRDITLEASRENNKPRTVLKPRKVCA-SGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp EEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC-SSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEE
T ss_pred EEEEcCCCcceeeeecccccccccccCCccccc-cCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeee
Confidence 999996644333333321110 000000000 00000000000 1122457899999999988888777777744
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-27 Score=270.45 Aligned_cols=319 Identities=10% Similarity=0.007 Sum_probs=228.3
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
+...++|.+++|+| ||+++||++.|++|+ |...++.+ .+| ...++++++ +|+| .++.+.+|
T Consensus 12 ~~~~~~v~sv~~Sp---DG~~iASas~D~TV~--d~~~~~~l---~gh-~~~v~~V~F---sPdg-------~~~~~~~~ 72 (588)
T 2j04_A 12 KEFEDWKNNLTWAR---DGTLYLTTFPDISIG--QPKYAKDI---NCN-SKNLFHVKE---FPLE-------FENKLDFE 72 (588)
T ss_dssp CCCSSSSCCEEECT---TSCEEEECSSSEEEE--EECCCSCC---SSB-GGGTEEEEE---ECCC-------CCCTTTTS
T ss_pred hHhhccEEEEEECC---CCCEEEEEcCCceee--ccccccee---cCC-CccEEEEEE---CCCC-------CcceEEEE
Confidence 35568999999999 999999999999999 76666544 333 345777777 4555 45555555
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
+.+ .. .+..+ +|...|.+++|+|+|++|++++.||.|++||...
T Consensus 73 ~~~---------------------------------~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~- 116 (588)
T 2j04_A 73 LAQ---------------------------------QN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK- 116 (588)
T ss_dssp CCC---------------------------------SS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-
T ss_pred eCC---------------------------------Cc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-
Confidence 443 11 11111 5688999999999999999999999999999543
Q ss_pred cccCCCCceeeeceeeeccCc-----ceEEEEEC--CCEEEEEeCCCcEEEEcCC-Cc-------eeEEE----cccCCC
Q 001391 289 YWKDSDSIEEVGSSVLYGHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGSD-GK-------QLKMI----KEHIGR 349 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~-----~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-~~-------~~~~~----~~h~~~ 349 (1088)
.+. .+. |.. .|.+++|+ +++|++|+.||+|++||+. ++ .+.++ .+|..
T Consensus 117 ---------~l~--~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~- 183 (588)
T 2j04_A 117 ---------MLT--NLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD- 183 (588)
T ss_dssp ---------EEE--ECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-
T ss_pred ---------eee--ecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc-
Confidence 222 334 554 59999999 7899999999999999994 43 25676 66766
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeec-cCCCCceEEEEec
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT-DSKSEYVRCLHLT 428 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~~s 428 (1088)
.|.+++|+|+| +++++.|++|++|++.+....+ ....+ ..|...|.+++|+
T Consensus 184 ~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~--------------------------~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP--------------------------VSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC--------------------------CEEEEECCCSSCCCCEEEE
T ss_pred cEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc--------------------------ceeeecccccCcEEEEEEE
Confidence 69999999999 8889999999999996542210 00111 2344679999999
Q ss_pred cCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc
Q 001391 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1088)
Q Consensus 429 ~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~ 508 (1088)
+..++++.++.+..|++ ..........+ +...+..+.+.. .+++..+++++++|. ++|..+.
T Consensus 236 --g~~LASa~~~tIkLWd~---~~~~~~~~~~g-h~~~V~~va~~~------s~d~~~La~a~edG~-klw~~d~----- 297 (588)
T 2j04_A 236 --DYKVVLTCPGYVHKIDL---KNYSISSLKTG-SLENFHIIPLNH------EKESTILLMSNKTSY-KVLLEDE----- 297 (588)
T ss_dssp --TTEEEEECSSEEEEEET---TTTEEEEEECS-CCSCCCEEEETT------CSSCEEEEECSSCEE-EEEESSS-----
T ss_pred --CCEEEEEeCCeEEEEEC---CCCeEEEEEcC-CCceEEEEEeee------CCCCCEEEEEcCCCC-EEEeecc-----
Confidence 45666666788885544 33332222224 466777777711 134478999999999 9997651
Q ss_pred ceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEe
Q 001391 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (1088)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~ 588 (1088)
..++||+..+++. |+++++|+...... ..+ .+...|.+++|
T Consensus 298 --------------------~~~spd~~l~a~~--d~~v~lW~~~g~~l---------------~~~--~~~~~I~~va~ 338 (588)
T 2j04_A 298 --------------------LHVTADNIIAPYL--EKKFKKWSTIWNEF---------------NNY--ETTLVIHGISL 338 (588)
T ss_dssp --------------------EEEECCCSSHHHH--HHHHHHTTTTTTSS---------------SSS--CCEEEEEEEEE
T ss_pred --------------------EEECCCceEEEEc--CCEEEEEECCCCce---------------eee--ccceEEEEEEE
Confidence 2377888887765 99999998753321 011 22556999999
Q ss_pred eeCCCEEEEEcC
Q 001391 589 SFEDEVLFCGDL 600 (1088)
Q Consensus 589 spdg~~LatGs~ 600 (1088)
||||++||++++
T Consensus 339 SPdG~~lA~~~~ 350 (588)
T 2j04_A 339 SPDGYSIAIVYD 350 (588)
T ss_dssp CTTSSEEEEEEE
T ss_pred CCCCCEEEEEEe
Confidence 999999999875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-23 Score=269.66 Aligned_cols=442 Identities=8% Similarity=-0.008 Sum_probs=289.6
Q ss_pred CCceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCC
Q 001391 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV 83 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d 83 (1088)
+++++|.+....+.+.+...+|| | +.|+....+.|++||+.+++. ..+..|.. .+.+++|| ||
T Consensus 1 ~~~kl~~~~g~~~~~~~~~~~~S--~------~~iaf~~~~~l~~~~~~gg~~-~~lt~~~~-~v~~~~~S-------PD 63 (1045)
T 1k32_A 1 KTFKLHEMHGLCMPNLLLNPDIH--G------DRIIFVCCDDLWEHDLKSGST-RKIVSNLG-VINNARFF-------PD 63 (1045)
T ss_dssp ------------CCCCCEEEEEE--T------TEEEEEETTEEEEEETTTCCE-EEEECSSS-EEEEEEEC-------TT
T ss_pred CcccccccccccccceEeCcEEe--C------CEEEEEECCcEEEEECCCCcE-EEeeeCCC-cccCeEEC-------CC
Confidence 36788876554466789999999 5 478888878999999988764 45665555 79999999 88
Q ss_pred ccceeeEEEEE-C------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE-------EEEEEecccCCCCE
Q 001391 84 STRVTFEVALF-G------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-------FDVCFLKVCNGNRS 149 (1088)
Q Consensus 84 ~~~~~~~la~~-g------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I-------~~v~f~p~~~d~~~ 149 (1088)
| ..|+.. . +..|.+|++... ....+..|...+ .+++|+| ||++
T Consensus 64 G----~~la~~s~~~~~~~~~~i~~~d~~~g----------------~~~~lt~~~~~~~~~~~~~~~~~~Sp---Dg~l 120 (1045)
T 1k32_A 64 G----RKIAIRVMRGSSLNTADLYFYNGENG----------------EIKRITYFSGKSTGRRMFTDVAGFDP---DGNL 120 (1045)
T ss_dssp S----SEEEEEEEESTTCCEEEEEEEETTTT----------------EEEECCCCCEEEETTEECSEEEEECT---TCCE
T ss_pred C----CEEEEEEeeccCCCCCeEEEEECCCC----------------CeEEcccCCCcccccccccccccCCC---CCEE
Confidence 8 455543 2 247888887632 245677888888 9999999 9997
Q ss_pred EEEEEcC------CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC------------CeEEEEEec
Q 001391 150 LAIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------------NEIIVWKVD 211 (1088)
Q Consensus 150 lasgs~D------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d------------g~I~vwd~~ 211 (1088)
+++++.+ ..|.+|++.+++.......+.. .+.+ +| + +++++..+ ....+|...
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~----~~~~---sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT----HILF---AD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS----EEEE---ET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred EEEECCcCCCcccceEEEEECCCCCeEEecCCCcc----eeee---CC-C-EEEEeccCCCccccccccCCCcCCEEEEC
Confidence 7887754 3577888877765333222222 2223 35 6 77776532 334555433
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
.......+.+|.+.+.++.|+++ ..+++++.|+.+++|.+.....
T Consensus 192 ---------------------------------~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~- 236 (1045)
T 1k32_A 192 ---------------------------------NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK- 236 (1045)
T ss_dssp ---------------------------------ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-
T ss_pred ---------------------------------CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-
Confidence 11334556899999999999998 6677788889999998764211
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEccc-----------CCCCeEEEEEc-
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEH-----------IGRGIWRCLYD- 357 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h-----------~~~~V~~l~~~- 357 (1088)
... .+..|. .+...+|+ +..|+.+ .++.|++|+..+..+..+..+ .. .+.+++|+
T Consensus 237 ------~~~--~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~-~v~~~~~S~ 305 (1045)
T 1k32_A 237 ------DLR--KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIP-SKFAEDFSP 305 (1045)
T ss_dssp ------SCE--ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECG-GGGEEEEEE
T ss_pred ------cce--EecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCccccccccccccc-ccceeeecC
Confidence 111 333443 34455676 6677776 589999999965555555542 22 48899999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCC-ceEEEEeccCCeEEEE
Q 001391 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE-YVRCLHLTSEDTLYIA 436 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s~~~~ll~~ 436 (1088)
|||++|++++ ++.|.+|+..+..... +..+.. .++.++|+ +++.++.
T Consensus 306 pdG~~la~~~-~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVSGTYVLK------------------------------VPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTTSSBEEE------------------------------CSCCSCEEEEEECSS-SEEEEEE
T ss_pred CCCCEEEEEE-cCEEEEEcCCCCceEE------------------------------ccCCCcceEEeeeEc-CCCeEEE
Confidence 9999998887 7889999885421111 112223 67889999 8865554
Q ss_pred -ecCCeEE-EEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeee
Q 001391 437 -TNHGYLY-HTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTF 514 (1088)
Q Consensus 437 -t~~g~i~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~ 514 (1088)
+.++.++ .+++ .......+. .+...+..+++++ +++.+++++.++.|++|++.++.....
T Consensus 354 ~s~~~~l~~~~d~---~~~~~~~l~--~~~~~~~~~~~Sp--------DG~~la~~~~~~~v~~~d~~tg~~~~~----- 415 (1045)
T 1k32_A 354 GTREGDFLGIYDY---RTGKAEKFE--ENLGNVFAMGVDR--------NGKFAVVANDRFEIMTVDLETGKPTVI----- 415 (1045)
T ss_dssp EETTEEEEEEEET---TTCCEEECC--CCCCSEEEEEECT--------TSSEEEEEETTSEEEEEETTTCCEEEE-----
T ss_pred EECCCceEEEEEC---CCCCceEec--CCccceeeeEECC--------CCCEEEEECCCCeEEEEECCCCceEEe-----
Confidence 4444454 4443 222322333 3345677777754 458999999999999999987653211
Q ss_pred eeeccccceeeeEEEeecCCCeEEEEECCC----------CeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEE
Q 001391 515 TWSAGIERQLLGTYWCKSLGHRFIFTADPK----------GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (1088)
Q Consensus 515 ~~~~~~~~~~~~~~~~~s~dg~~L~s~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It 584 (1088)
. ..+...+.. .+++|||++|++++.+ +.|++||+.... +.. ...|...+.
T Consensus 416 -~-~~~~~~v~~--~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---------------~~~-l~~~~~~~~ 475 (1045)
T 1k32_A 416 -E-RSREAMITD--FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---------------IFA-ATTENSHDY 475 (1045)
T ss_dssp -E-ECSSSCCCC--EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---------------EEE-CSCSSSBEE
T ss_pred -c-cCCCCCccc--eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---------------EEE-eeCCCcccC
Confidence 1 012222222 4689999999877654 499999987542 011 224667788
Q ss_pred EEEeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 585 CLDASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 585 ~l~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
+++|+|||+.|++++.++...+|+..
T Consensus 476 ~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 476 APAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CceEcCCCCEEEEEecccCCcCcchh
Confidence 99999999999999998888888754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=245.15 Aligned_cols=285 Identities=13% Similarity=0.087 Sum_probs=200.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-E
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~ 94 (1088)
|.++|.+++|+ || +++|++|.+..++|||+.+++.+..... . .+..+++. ++++ .++++ +
T Consensus 18 h~~~V~~v~fs--~d----g~~la~g~~~~~~iw~~~~~~~~~~~~~-~--~~~~~~~~-------~~~~---~~~~~~~ 78 (355)
T 3vu4_A 18 VSNPVTDYEFN--QD----QSCLILSTLKSFEIYNVHPVAHIMSQEM-R--HLSKVRML-------HRTN---YVAFVTG 78 (355)
T ss_dssp -CCCCCEEEEC--TT----SSEEEEECSSEEEEEEETTEEEEEEEEC-S--CCCEEEEC-------TTSS---EEEEECS
T ss_pred CCCceEEEEEC--CC----CCEEEEEcCCEEEEEecCCcceeeeeec-C--CeEEEEEc-------CCCC---EEEEEEC
Confidence 66899999999 99 8999999987799999998877655442 2 36667776 4431 44333 4
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceEEEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~~~~ 173 (1088)
+|++|+|||+.. .+.+..+. |...|.+++|++ + .++++ .|+.|++||+.++ +.+..+
T Consensus 79 ~d~~v~iWd~~~---------------~~~~~~~~-~~~~v~~v~~~~---~--~~~~~-~~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 79 VKEVVHIWDDVK---------------KQDVSRIK-VDAPVKDLFLSR---E--FIVVS-YGDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp STTEEEEEETTT---------------TEEEEEEE-CSSCEEEEEECS---S--EEEEE-ETTEEEEEESSTTCCBSSCC
T ss_pred CccEEEEEECCC---------------CcEEEEEE-CCCceEEEEEcC---C--EEEEE-EcCEEEEEECCCCceeeEEe
Confidence 478999999875 34455554 667999999987 4 34444 4889999999987 655544
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEE--EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee-eE
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LF 250 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~s--g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~ 250 (1088)
..+ ...+++ ++ ..++. |+.+|.|++||+.+.+...... ... ......+ +.
T Consensus 137 ~~~----~~~~~~---s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~--------------~~~----~~~~~~p~~~ 189 (355)
T 3vu4_A 137 IRF----GGVCEF---SN--GLLVYSNEFNLGQIHITKLQSSGSATTQD--------------QGV----QQKAILGKGV 189 (355)
T ss_dssp EEE----EEEEEE---ET--TEEEEEESSCTTCEEEEECCC------------------------------------CCE
T ss_pred ccC----CceEEE---Ec--cEEEEeCCCcCcEEEEEECCCCCcccccc--------------ccc----cccccCcccE
Confidence 431 111222 22 34444 7899999999998321000000 000 0001123 67
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCc-EEEEEcCCCcccCCCCceeeeceeee-c-cCcceEEEEEC--CCEEEEEe
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLY-G-HNARVWDCCLT--DSFIITAG 325 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~-v~iWd~~~~~~~~~~~~~~i~~~~~~-~-h~~~I~~v~~~--~~~l~sg~ 325 (1088)
.+.+|.+.|.+++|+|++++|++++.|++ |++||+.+++ .+. .+. + |...|.+++|+ +.+|++++
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--------~~~--~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--------LVR--EFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--------EEE--EEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--------EEE--EEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 88999999999999999999999999998 9999999853 343 555 5 99999999998 68999999
Q ss_pred CCCcEEEEcCC-Cc--eeEEEcc--------------------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGSD-GK--QLKMIKE--------------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~~-~~--~~~~~~~--------------------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|++|++||+. +. ....+.. ....+...++|++++++|++++.||.+++|++.
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 99999999983 21 1111111 111124678999999999999999999999984
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=240.68 Aligned_cols=298 Identities=15% Similarity=0.104 Sum_probs=219.0
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEeCCC
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDC 328 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg 328 (1088)
..+|.+.|.+++|+|++++|++++.|+.|++|++.+... ..... ...+|...|.+++|+ +. +|++|+.||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----NVDLL--QSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----EEEEE--EEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----cccce--eeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 358999999999999999999999999999999987642 11222 566899999999998 67 899999999
Q ss_pred cEEEEcC-CCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 329 TCRVWGS-DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
.|++|++ .......+.. |.. .|.+++|+| +.+|++++.|+.|++||+..... ......
T Consensus 80 ~i~~wd~~~~~~~~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~---------------~~~~~~-- 140 (342)
T 1yfq_A 80 EILKVDLIGSPSFQALTNNEANL-GICRICKYG-DDKLIAASWDGLIEVIDPRNYGD---------------GVIAVK-- 140 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEEEECHHHHTT---------------BCEEEE--
T ss_pred eEEEEEeccCCceEeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEEEEccccccc---------------cccccc--
Confidence 9999999 8877888888 888 799999999 99999999999999999842000 000000
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc-CCcceeEEeeeecCCcceEEEecCC-CCCCCcCCC
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD-MDSVNWNKILQVSEGMPIICMDLLS-NEPKYPCGI 483 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~s~~~ 483 (1088)
...+..+. +...|.+++|++++ +++++.++.+..|++.. ... .. ......+...+.++++.+ +
T Consensus 141 ---~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~~~i~~i~~~~~~-------- 205 (342)
T 1yfq_A 141 ---NLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD-NG-TIEESGLKYQIRDVALLPKE-------- 205 (342)
T ss_dssp ---ESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC-CC-EEEECSCSSCEEEEEECSGG--------
T ss_pred ---CCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc-cc-eeeecCCCCceeEEEECCCC--------
Confidence 00011111 44679999999987 88889999999777655 222 11 222344566788888865 4
Q ss_pred CCeEEEecCCCCEEEEEEcCC--CcCcceeeeeeeecc------ccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 484 DDWVALGDGKGNMTIVRVVGD--VHTPQLSFTFTWSAG------IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 484 ~~~la~g~~dg~I~iw~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
+..+++++.||.|++|+++.. ....+....+..+.. +...+.. .+++|++++|++++.||.|++||+...
T Consensus 206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS--IEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE--EEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEE--EEEcCCCCEEEEecCCceEEEEcCccH
Confidence 489999999999999999865 110111111211111 0112333 568999999999999999999999854
Q ss_pred CCcccccCCcccceeeeeeecccc-CceEEEEEeeeCCCEEEEEcCCCc-EEEEeC
Q 001391 556 FSSVCYESSKTNNVFLVAEFSSCF-GARIMCLDASFEDEVLFCGDLRGN-LVLFPL 609 (1088)
Q Consensus 556 ~~~~~~~~~~~~~~~l~~~~~~~h-~~~It~l~~spdg~~LatGs~dg~-I~Iw~~ 609 (1088)
. +...+ ..| ...|++++ |++++|++|+.||+ .+.|..
T Consensus 284 ~--------------~~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 284 K--------------KIKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp E--------------EEEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred h--------------Hhhhh-hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 2 22332 355 89999999 99999999999998 555553
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=232.94 Aligned_cols=294 Identities=12% Similarity=0.073 Sum_probs=196.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC---eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
..-++.++-+- .. .....-+++++...|++|+..++ +++++.+.++. +|..|.++ ||.. ..+.+
T Consensus 38 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~~--~~~~~ 104 (356)
T 2w18_A 38 CSVDVSAMFWE--RA-GCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEV-PVLQIVPV-------PDVY--NLVCV 104 (356)
T ss_dssp CEEEEEEEEEC-------CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSS-CEEEECCC-------TTCC--SCEEE
T ss_pred eEEEEeeeeec--cC-CCCccEEEEeccceEEEcccCCCccceeeEEEeccCc-eeEEEEEc-------Cccc--ceeee
Confidence 44567777665 33 01123566677899999999999 89999997554 89999999 5432 12333
Q ss_pred EECC-CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE--cCCcEEEEEc-CCCc
Q 001391 93 LFGE-KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDI-SNSS 168 (1088)
Q Consensus 93 ~~gd-~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs--~Dg~V~iWd~-~~~~ 168 (1088)
+-|. ..-.++.+.. +|++....+.+.. .+|...|+++ + +++++.+++ .|+.|++|++ .+++
T Consensus 105 ~~~~~~~~~v~sla~--------spd~~~~~~~l~s-~g~~~~v~~l---~---~g~lv~ss~~g~d~~V~~~~~s~dG~ 169 (356)
T 2w18_A 105 ALGNLEIREIRALFC--------SSDDESEKQVLLK-SGNIKAVLGL---T---KRRLVSSSGTLSDQQVEVMTFAEDGG 169 (356)
T ss_dssp EECSSSEEEEEEECC--------------CCEEEEE-EEEEEEEEEE---T---TTEEEEEESSSTTCEEEEEEECTTSC
T ss_pred eeccccccceEEEEE--------CCCccccccEEEe-CCCeEEEEec---C---CCcEEEecccCCCCcEEEEEECCCCc
Confidence 3343 2223333331 1111111111111 3455566654 5 777776644 5999999999 4477
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
.+..+..+... ...++|..-..++.+|++|+.|++|+|||+. +++.
T Consensus 170 ~~~s~~~~~~~-v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~---------------------------------TGk~ 215 (356)
T 2w18_A 170 GKENQFLMPPE-ETILTFAEVQGMQEALLGTTIMNNIVIWNLK---------------------------------TGQL 215 (356)
T ss_dssp EEEEEEECCCS-SCEEEEEEEETSTTEEEEEETTSEEEEEETT---------------------------------TCCE
T ss_pred eeeeeccCCCc-eeeEEeeccCCCCceEEEecCCCcEEEEECC---------------------------------CCcE
Confidence 66654433221 1122221112367999999999999999999 7888
Q ss_pred eEEEeCCC---CCEEEEEEcCCCCEE------------EEEECCCcEEEEEcCCCcccCCCCceeeecee-eeccCcceE
Q 001391 249 LFRLVGHE---GSIFRIEWSSCGSKL------------VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV-LYGHNARVW 312 (1088)
Q Consensus 249 ~~~~~gh~---~~V~~v~~sp~g~~l------------~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~-~~~h~~~I~ 312 (1088)
++.+.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++. ...+. .. ..+|...+.
T Consensus 216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-----l~v~~-~~~p~Gh~~~~l 289 (356)
T 2w18_A 216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-----VGVML-YCLPPGQAGRFL 289 (356)
T ss_dssp EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE-----EEEEE-ECCCTTCCCCEE
T ss_pred EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-----EEEEE-eeccCCCcceeE
Confidence 88888754 467888999999876 6688999999999988643 11110 01 147777777
Q ss_pred EEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 313 DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 313 ~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+..+++.++++|+.|++|+|||+ +++++.++.+|....+.+++|+|||++|++|+.|++|+|||+
T Consensus 290 sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 290 EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 77777889999999999999999 899999999998743446899999999999999999999986
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=255.12 Aligned_cols=285 Identities=14% Similarity=0.102 Sum_probs=218.8
Q ss_pred eeEEEEEeccCCCCCCCCEEE-EEe-CCeEEEEECCCCe----eEEEEeeeCCcceEEEEecccccccCC-CccceeeEE
Q 001391 19 EISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEV 91 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~la-ag~-d~~I~vwd~~tg~----~~~~~~~~~~~~V~~i~~s~~~~~~~~-d~~~~~~~l 91 (1088)
....++++ |+ ...++ +|+ ||.|+|||+.+.. .+..+.+|.+ .|.+++|+ | +++ .++
T Consensus 36 ~~~~~~~~--~~----~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~-------p~~~~---~l~ 98 (402)
T 2aq5_A 36 DSGFCAVN--PK----FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTA-PVLDIAWC-------PHNDN---VIA 98 (402)
T ss_dssp SSCSEEEC--SS----EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSS-CEEEEEEC-------TTCTT---EEE
T ss_pred CCCcEEEC--CC----eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCC-CEEEEEeC-------CCCCC---EEE
Confidence 34567888 76 43333 344 7999999996542 3445666665 79999999 6 552 444
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceE
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
+++.|++|+||++........ ..+.+..+.+|...|.+++|+| ++ .+|++|+.|++|++||+.+++.+
T Consensus 99 s~s~dg~v~vw~~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~p---~~~~~l~s~~~dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 99 SGSEDCTVMVWEIPDGGLVLP--------LREPVITLEGHTKRVGIVAWHP---TAQNVLLSAGCDNVILVWDVGTGAAV 167 (402)
T ss_dssp EEETTSEEEEEECCTTCCSSC--------BCSCSEEEECCSSCEEEEEECS---SBTTEEEEEETTSCEEEEETTTTEEE
T ss_pred EEeCCCeEEEEEccCCCCccc--------cCCceEEecCCCCeEEEEEECc---CCCCEEEEEcCCCEEEEEECCCCCcc
Confidence 555699999999986431100 0145677889999999999999 87 69999999999999999999998
Q ss_pred EEe--ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 171 LEV--HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 171 ~~~--~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
..+ ..+ ...+.++++ ++++.+|++++.||.|++||++ .+..
T Consensus 168 ~~~~~~~~-~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~---------------------------------~~~~ 210 (402)
T 2aq5_A 168 LTLGPDVH-PDTIYSVDW---SRDGALICTSCRDKRVRVIEPR---------------------------------KGTV 210 (402)
T ss_dssp EEECTTTC-CSCEEEEEE---CTTSSCEEEEETTSEEEEEETT---------------------------------TTEE
T ss_pred EEEecCCC-CCceEEEEE---CCCCCEEEEEecCCcEEEEeCC---------------------------------CCce
Confidence 888 444 345677776 5789999999999999999998 6677
Q ss_pred eEEE-eCCCCC-EEEEEEcCCCCEEEEE---ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE
Q 001391 249 LFRL-VGHEGS-IFRIEWSSCGSKLVSV---SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (1088)
Q Consensus 249 ~~~~-~gh~~~-V~~v~~sp~g~~l~s~---s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l 321 (1088)
+..+ .+|.+. +.++.|+|++.+++++ +.|+.|++||+.+... .+. .....|...+.+++|+ +.+|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-------~~~-~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-------PLS-LQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-------CSE-EEECCCCSSCEEEEEETTTTEE
T ss_pred eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-------Cce-EEeccCCCceeEEEEcCCCCEE
Confidence 7777 788876 9999999999999999 7999999999988532 122 1334677889999998 4666
Q ss_pred E-EEeCCCcEEEEcC-CCce-eEEEccc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 322 I-TAGEDCTCRVWGS-DGKQ-LKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 322 ~-sg~~Dg~i~vWd~-~~~~-~~~~~~h--~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ +|+.||.|++|++ ++++ +..+..| .. +|.+++|+|++.++++ .|+.+++|++..
T Consensus 283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~-~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 283 YLCGKGDSSIRYFEITSEAPFLHYLSMFSSKE-SQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEETTCSCEEEEEECSSTTCEEEEEEECCSS-CCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEEEcCCCeEEEEEecCCCcceEeecccccCC-cccceEEeccccccee--cceeEEEEEcCC
Confidence 5 5668999999999 4553 5555544 35 7999999999987764 577999999954
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=237.84 Aligned_cols=309 Identities=13% Similarity=0.100 Sum_probs=206.8
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc----eEEEeccCCceeEEEEeeecCCC--CCcEEEEE
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNL--EALRIASG 199 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~--~~~~l~sg 199 (1088)
..+.+|.+.|++++|+| ++++|++|+.||.|++||+.++. ....+..+. ..+.++++ ++ ++.+|++|
T Consensus 5 ~~~~gH~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~~~~---~~~~d~~~l~s~ 77 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-SSIVAIDW---ASPEYGRIIASA 77 (351)
T ss_dssp CEECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-SCEEEEEE---CCGGGCSEEEEE
T ss_pred ccCcccccceeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC-CcEEEEEE---cCCCCCCEEEEE
Confidence 34579999999999999 99999999999999999998763 444555444 34667776 34 58899999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC--CCEEEEEECC
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDD 277 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~--g~~l~s~s~D 277 (1088)
+.||.|++||+.+.+.... ......+..+.+|.+.|.+++|+|+ +.++++++.|
T Consensus 78 ~~dg~v~vwd~~~~~~~~~------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECS------------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp ETTSCEEEEEECTTSCTTS------------------------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCCCeEEEEecCCCccccc------------------------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 9999999999983221100 0022567788899999999999999 9999999999
Q ss_pred CcEEEEEcCCCcccCCCCc-eeee--ceeeeccCcceEEEEEC-----CCEEEEEeCCCcEEEEcC-CCce--eEEEccc
Q 001391 278 RSARIWEVRAEYWKDSDSI-EEVG--SSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGS-DGKQ--LKMIKEH 346 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~-~~i~--~~~~~~h~~~I~~v~~~-----~~~l~sg~~Dg~i~vWd~-~~~~--~~~~~~h 346 (1088)
+.|++||+.+.+....... .... .....+|...+.+++|+ +.++++++.|+.+.+|+. .++. +..+.+|
T Consensus 134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 213 (351)
T 3f3f_A 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213 (351)
T ss_dssp CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC
T ss_pred CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC
Confidence 9999999988654211100 0000 01223688899999996 579999999999988887 4443 6677888
Q ss_pred CCCCeEEEEEcCCC----CEEEEEeCCCCEEEEEcCCCCC-CcccCCccccccCCCcceEEeeeCCCccceeeccCCCCc
Q 001391 347 IGRGIWRCLYDSLS----SLLVTAGFDSAIKVHQFQAFLP-GSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEY 421 (1088)
Q Consensus 347 ~~~~V~~l~~~~dg----~~l~tg~~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (1088)
.. .|++++|+|++ ++|++|+.||.|++||+..... ....... ..
T Consensus 214 ~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------~~ 262 (351)
T 3f3f_A 214 KS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESL------------------------------TN 262 (351)
T ss_dssp CS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------
T ss_pred Cc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcc------------------------------cc
Confidence 88 79999999998 8999999999999999954211 1000000 00
Q ss_pred eEEEEeccCCeEEEEe--cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEE
Q 001391 422 VRCLHLTSEDTLYIAT--NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (1088)
Q Consensus 422 V~~l~~s~~~~ll~~t--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw 499 (1088)
+......+........ ..+......++............+ +...+.++++.++ +++|++|+.||.|++|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~--------~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-HNGEVWSVSWNLT--------GTILSSAGDDGKVRLW 333 (351)
T ss_dssp ----------------------------CCSEEEEEEEEECT-TSSCEEEEEECSS--------SCCEEEEETTSCEEEE
T ss_pred eeccCCCcccccccccccccccceeeeecccccccEEEEEec-ccccEEEEEEcCC--------CCEEEEecCCCcEEEE
Confidence 1111111111111110 011111222333332222222333 3567999988654 4899999999999999
Q ss_pred EEcCCC
Q 001391 500 RVVGDV 505 (1088)
Q Consensus 500 ~~~~~~ 505 (1088)
++.+++
T Consensus 334 ~~~~~~ 339 (351)
T 3f3f_A 334 KATYSN 339 (351)
T ss_dssp EECTTS
T ss_pred ecCcCc
Confidence 998754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=248.87 Aligned_cols=285 Identities=9% Similarity=0.014 Sum_probs=215.6
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe---eEEEEeeeCC----------------------------
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---LIRPFQVFHG---------------------------- 65 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~---~~~~~~~~~~---------------------------- 65 (1088)
..|+.+++|+ |+ +++|+++.++.|++||+.+|+ .+..+..+..
T Consensus 4 ~~p~~~v~~s--~d----g~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 4 IHPLQNLLTS--RD----GSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp ECCCCEEEEC--SS----SSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred cccEEEEEec--CC----CCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence 3589999999 99 889999989999999999998 6666653211
Q ss_pred -------------------------cceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccc
Q 001391 66 -------------------------IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETC 119 (1088)
Q Consensus 66 -------------------------~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~ 119 (1088)
..|.+++|+ |+++ .++++++ |+.|+||++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------~d~~---~l~~~~~~dg~v~iwd~~~~~----------- 136 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT-------SDES---RLIACADSDKSLLVFDVDKTS----------- 136 (450)
T ss_dssp ----------------------CCCCCEEEEEEC-------TTSS---EEEEEEGGGTEEEEEEECSSS-----------
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEc-------CCCC---EEEEEECCCCeEEEEECcCCC-----------
Confidence 159999999 7773 4446664 8999999998311
Q ss_pred cccceeeecc--CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE----EeccCCceeEEEEeeecCCCC-
Q 001391 120 VNLSLVQSLP--RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL----EVHSPERCLLYSMKLWGDNLE- 192 (1088)
Q Consensus 120 ~~~~~~~~l~--~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~----~~~~~~~~~~~s~~~~~~s~~- 192 (1088)
.+.+..+. .|...|.+++|+| ++++|++|+.|+.|++|++.+++... .+..+. ..+.++++ +|+
T Consensus 137 --~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~---sp~~ 207 (450)
T 2vdu_B 137 --KNVLKLRKRFCFSKRPNAISIAE---DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV-SMLTDVHL---IKDS 207 (450)
T ss_dssp --SSCEEEEEEEECSSCEEEEEECT---TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS-SCEEEEEE---EECT
T ss_pred --CceeeeeecccCCCCceEEEEcC---CCCEEEEEeCCCcEEEEecCCcccccccceeeeccc-CceEEEEE---cCCC
Confidence 23344443 5778999999999 99999999999999999998776443 333333 34666666 466
Q ss_pred --CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-EeCCCCCEEEEEEcCCCC
Q 001391 193 --ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGS 269 (1088)
Q Consensus 193 --~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~v~~sp~g~ 269 (1088)
+.+|++|+.|+.|++||+. .+..+.. +.+|.+.|.+++|+ +++
T Consensus 208 ~~~~~l~s~~~d~~i~vwd~~---------------------------------~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 208 DGHQFIITSDRDEHIKISHYP---------------------------------QCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp TSCEEEEEEETTSCEEEEEES---------------------------------CTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred CCCcEEEEEcCCCcEEEEECC---------------------------------CCceeeeeecCCCCceEEEEEC-CCC
Confidence 8899999999999999998 4555555 55899999999999 999
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeec------e--------------eeeccCcceEEEEEC--CCEEEEEe-C
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS------S--------------VLYGHNARVWDCCLT--DSFIITAG-E 326 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~------~--------------~~~~h~~~I~~v~~~--~~~l~sg~-~ 326 (1088)
+|++++.|+.|++||+.+++. ...+.. + ....+...|.+++|+ +.+|++++ .
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKN-----LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCE-----EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred EEEEEeCCCeEEEEECCCCcE-----eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 999999999999999998653 111110 0 000234568899998 67888888 8
Q ss_pred CCcEEEEcC---CC---ceeEEEcccCCCCeEEEEEcCCCCEEEEEeC------CCCEEEEEcC
Q 001391 327 DCTCRVWGS---DG---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIKVHQFQ 378 (1088)
Q Consensus 327 Dg~i~vWd~---~~---~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~------Dg~I~iwd~~ 378 (1088)
|+.|++|++ .+ +.+..+..| + .|++++|+|++.++++++. +..|.+|.++
T Consensus 329 d~~i~iw~~~~~~~~~l~~~~~~~~~-~-~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 329 TKCIIILEMSEKQKGDLALKQIITFP-Y-NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CSEEEEEEECSSSTTCEEEEEEEECS-S-CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCeEEEEEeccCCCCceeeccEeccC-C-ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999998 33 456667777 4 6999999996544444333 5568999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=245.35 Aligned_cols=297 Identities=13% Similarity=0.208 Sum_probs=222.0
Q ss_pred eeeEEEEEeccCCCCC------CCCEEEEEeC-----CeEEEEECC--------------------------CCee-EEE
Q 001391 18 GEISALCFVHLPSHLS------SLPFLLAGSG-----SQVLLYDLE--------------------------AGTL-IRP 59 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~------~~~~laag~d-----~~I~vwd~~--------------------------tg~~-~~~ 59 (1088)
-|..++.|. |+..+ ...++++|+- ..|.|+++. +++. +..
T Consensus 46 wp~l~~~~~--p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 123 (430)
T 2xyi_A 46 WPSLTAQWL--PDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEI 123 (430)
T ss_dssp SCCSCEEEC--SCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEE
T ss_pred CCceEEEEC--cccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEE
Confidence 356788888 87211 0146777761 478887643 1222 223
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
...|.+ .|.+++|+ |++. .++++++ ++.|++|++........ .....+....+.+|...|.++
T Consensus 124 ~~~h~~-~v~~l~~~-------p~~~---~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l 187 (430)
T 2xyi_A 124 KINHEG-EVNRARYM-------PQNA---CVIATKTPSSDVLVFDYTKHPSKPE-----PSGECQPDLRLRGHQKEGYGL 187 (430)
T ss_dssp EEEESS-CCSEEEEE-------TTEE---EEEEEECSSSCEEEEEGGGSCSSCC-----TTCCCCCSEEEECCSSCCCCE
T ss_pred EEcCCC-cEEEEEEC-------CCCC---cEEEEECCCCcEEEEECCCcccccC-----ccccCCCcEEecCCCCCeEEE
Confidence 334454 79999999 6521 5666655 89999999985321110 001245677888999999999
Q ss_pred EEecccCCCC-EEEEEEcCCcEEEEEcCCCce-------EEEeccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEE
Q 001391 139 CFLKVCNGNR-SLAIGCSDNSIRVWDISNSSI-------ILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 139 ~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~-------~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd 209 (1088)
+|+| ++. +|++|+.||+|++||+..+.. ...+..+ ...+.++++ ++ ++.++++++.||.|++||
T Consensus 188 ~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~---~p~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 188 SWNP---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAW---HLLHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp EECT---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEE---CSSCTTEEEEEETTSEEEEEE
T ss_pred EeCC---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEE---eCCCCCEEEEEeCCCeEEEEE
Confidence 9999 887 999999999999999987422 2333333 334667776 34 578999999999999999
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCC
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~ 288 (1088)
+++.. ....+..+.+|...|.+++|+|+++ .+++++.|+.|++||++..
T Consensus 261 ~~~~~------------------------------~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 261 TRNNN------------------------------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp TTCSC------------------------------SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCCC------------------------------CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 98210 1246667789999999999999987 6899999999999999874
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC--C-CEEEEEeCCCcEEEEcCCC---------------ceeEEEcccCCCC
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--D-SFIITAGEDCTCRVWGSDG---------------KQLKMIKEHIGRG 350 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~-~~l~sg~~Dg~i~vWd~~~---------------~~~~~~~~h~~~~ 350 (1088)
. ..+. .+.+|...|++++|+ + .+|++++.|+.|++||+.. +.+..+.+|.. .
T Consensus 311 ~-------~~~~--~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~ 380 (430)
T 2xyi_A 311 K-------LKLH--SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-K 380 (430)
T ss_dssp T-------SCSE--EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-C
T ss_pred C-------CCeE--EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-C
Confidence 2 2332 677899999999998 3 5799999999999999932 66777888887 6
Q ss_pred eEEEEEcCCCC-EEEEEeCCCCEEEEEcCC
Q 001391 351 IWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 351 V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~ 379 (1088)
|.+++|+|++. +|++++.||.|++|++..
T Consensus 381 v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 381 ISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99999999999 999999999999999964
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=237.58 Aligned_cols=294 Identities=11% Similarity=0.117 Sum_probs=216.1
Q ss_pred EEECCCCeeEEEEeeeCCcceEEEEecccccccCCC---ccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccce
Q 001391 48 LYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV---STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124 (1088)
Q Consensus 48 vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d---~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~ 124 (1088)
.|+....+.+..+..|.+ .|.+++|+ |+ |+ .+++++.|+.|+||++.... ...
T Consensus 23 ~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~~g~---~l~~~~~dg~i~iw~~~~~~-------------~~~ 78 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDD-SIGCLSFS-------PPTLPGN---FLIAGSWANDVRCWEVQDSG-------------QTI 78 (368)
T ss_dssp CCSSCTTCCEECSSCCSS-CEEEEEEC-------CTTSSSE---EEEEEETTSEEEEEEECTTS-------------CEE
T ss_pred cCCCCCcceeEeccCCCC-ceEEEEEc-------CCCCCce---EEEEECCCCcEEEEEcCCCC-------------cee
Confidence 345555667777777666 79999999 55 42 44455569999999998632 244
Q ss_pred eeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
...+.+|...|.+++|+| ++++|++|+.|+.|++||+.+++.+.... + ...+.++.+.. ++++.+|++++.||.
T Consensus 79 ~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~-~~~v~~~~~~~-~~~~~~l~~~~~dg~ 152 (368)
T 3mmy_A 79 PKAQQMHTGPVLDVCWSD---DGSKVFTASCDKTAKMWDLSSNQAIQIAQ-H-DAPVKTIHWIK-APNYSCVMTGSWDKT 152 (368)
T ss_dssp EEEEEECSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEE-C-SSCEEEEEEEE-CSSCEEEEEEETTSE
T ss_pred EEEeccccCCEEEEEECc---CCCEEEEEcCCCcEEEEEcCCCCceeecc-c-cCceEEEEEEe-CCCCCEEEEccCCCc
Confidence 467789999999999999 99999999999999999999988776443 2 23355665532 477889999999999
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
|++||++ ..+.+..+..|. .+.++.+.+ ..+++++.++.+++|+
T Consensus 153 i~vwd~~---------------------------------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 153 LKFWDTR---------------------------------SSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQ 196 (368)
T ss_dssp EEEECSS---------------------------------CSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEE
T ss_pred EEEEECC---------------------------------CCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEE
Confidence 9999998 566677777664 566666654 5889999999999999
Q ss_pred cCCCcccCCCCceeeec-eeeeccCcceEEEEECCC----EEEEEeCCCcEEEEcCC-C---ceeEEEcccCCC------
Q 001391 285 VRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLTDS----FIITAGEDCTCRVWGSD-G---KQLKMIKEHIGR------ 349 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~-~~~~~h~~~I~~v~~~~~----~l~sg~~Dg~i~vWd~~-~---~~~~~~~~h~~~------ 349 (1088)
+..... .... .....|...+.++...+. .+++++.||.+++|++. . +.+..+..|...
T Consensus 197 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 197 LENQPS-------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp CSSSCE-------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred eccccc-------hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence 987532 2210 122233334444444433 39999999999999993 3 556777777642
Q ss_pred -----CeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEE
Q 001391 350 -----GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (1088)
Q Consensus 350 -----~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 424 (1088)
+|++++|+|++++|++++.||.|++||+.... .+..+..+...|++
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART-----------------------------KLKTSEQLDQPISA 320 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-----------------------------EEEECCCCSSCEEE
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-----------------------------EEEEecCCCCCceE
Confidence 49999999999999999999999999985321 12223455678999
Q ss_pred EEeccCCeEEEE-ecCCeEE
Q 001391 425 LHLTSEDTLYIA-TNHGYLY 443 (1088)
Q Consensus 425 l~~s~~~~ll~~-t~~g~i~ 443 (1088)
++|+|++.++++ +.++...
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp EEECTTSSCEEEEECCCSTT
T ss_pred EEECCCCCeEEEEecccccc
Confidence 999999965554 4555433
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-22 Score=261.30 Aligned_cols=441 Identities=9% Similarity=-0.011 Sum_probs=291.5
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.+...+|| ++ .++...++.|.+|++... ....+.+|...|.+++|+| |
T Consensus 16 ~~~~~~~S-------~~------~iaf~~~~~l~~~~~~gg----------------~~~~lt~~~~~v~~~~~SP---D 63 (1045)
T 1k32_A 16 LLLNPDIH-------GD------RIIFVCCDDLWEHDLKSG----------------STRKIVSNLGVINNARFFP---D 63 (1045)
T ss_dssp CCEEEEEE-------TT------EEEEEETTEEEEEETTTC----------------CEEEEECSSSEEEEEEECT---T
T ss_pred eEeCcEEe-------CC------EEEEEECCcEEEEECCCC----------------cEEEeeeCCCcccCeEECC---C
Confidence 57888888 43 444444579999998742 2345668999999999999 9
Q ss_pred CCEEEEEEcC------CcEEEEEcCCCceEEEeccCCcee------EEEEeeecCCCCCcEEEEEecC------CeEEEE
Q 001391 147 NRSLAIGCSD------NSIRVWDISNSSIILEVHSPERCL------LYSMKLWGDNLEALRIASGTIY------NEIIVW 208 (1088)
Q Consensus 147 ~~~lasgs~D------g~V~iWd~~~~~~~~~~~~~~~~~------~~s~~~~~~s~~~~~l~sg~~d------g~I~vw 208 (1088)
|++||.++.+ ..|.+||+.+++ ...+..+.... +.+++| +||+.++++++.+ ..|.+|
T Consensus 64 G~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~---SpDg~ll~~~~~~~~~~~~~~l~~~ 139 (1045)
T 1k32_A 64 GRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGF---DPDGNLIISTDAMQPFSSMTCLYRV 139 (1045)
T ss_dssp SSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEE---CTTCCEEEEECTTSSSTTCCEEEEE
T ss_pred CCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccC---CCCCEEEEEECCcCCCcccceEEEE
Confidence 9999988654 379999998876 45555544332 145555 6888877777754 356667
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC------------
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD------------ 276 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~------------ 276 (1088)
++. .+.. ..+..+. ...++|+| | ++++++.
T Consensus 140 ~~~---------------------------------~g~~-~~l~~~~--~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g 181 (1045)
T 1k32_A 140 END---------------------------------GINF-VPLNLGP--ATHILFAD-G-RRVIGRNTFELPHWKGYRG 181 (1045)
T ss_dssp EGG---------------------------------GTEE-EECCSCS--CSEEEEET-T-EEEEEESCSCCTTSTTCCS
T ss_pred ECC---------------------------------CCCe-EEecCCC--cceeeeCC-C-EEEEeccCCCccccccccC
Confidence 765 2322 2233332 34577999 7 8888763
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC-EEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEE
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS-FIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~-~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~ 353 (1088)
+...++|..... .... .+.+|...+.++.|++. ++++++.|+++++|.+ .+.....+..|.. +..
T Consensus 182 ~~~~~lw~~~~~--------~~~~--~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~--~~~ 249 (1045)
T 1k32_A 182 GTRGKIWIEVNS--------GAFK--KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD--YYP 249 (1045)
T ss_dssp TTCCEEEEEEET--------TEEE--EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCS--SCE
T ss_pred CCcCCEEEECCC--------CCeE--ECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCC--cce
Confidence 334567754332 1122 45789999999999854 5567778899999986 4666677766653 667
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEec-cCCe
Q 001391 354 CLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT-SEDT 432 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~ 432 (1088)
.+|+|||++|+.+ .++.|.+|++....+..+..+. ......+..+...+..++|+ |+|+
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~-------------------~~~~~~~~~~~~~v~~~~~S~pdG~ 309 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGD-------------------LESPEDRIISIPSKFAEDFSPLDGD 309 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCC-------------------CCBCCSEEEECGGGGEEEEEECGGG
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCc-------------------ccccccccccccccceeeecCCCCC
Confidence 7999999988887 5899999998433222111110 00000011233468899999 9998
Q ss_pred EEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEE-EEEEcCCCcCccee
Q 001391 433 LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT-IVRVVGDVHTPQLS 511 (1088)
Q Consensus 433 ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~-iw~~~~~~~~~~~~ 511 (1088)
.++...++.++.+++... .... ...+....+..+.+. ++..+++++.++.+. +|++..+....
T Consensus 310 ~la~~~~~~i~~~~~~~~---~~~~-~~~~~~~~~~~~~~s---------dg~~l~~~s~~~~l~~~~d~~~~~~~~--- 373 (1045)
T 1k32_A 310 LIAFVSRGQAFIQDVSGT---YVLK-VPEPLRIRYVRRGGD---------TKVAFIHGTREGDFLGIYDYRTGKAEK--- 373 (1045)
T ss_dssp CEEEEETTEEEEECTTSS---BEEE-CSCCSCEEEEEECSS---------SEEEEEEEETTEEEEEEEETTTCCEEE---
T ss_pred EEEEEEcCEEEEEcCCCC---ceEE-ccCCCcceEEeeeEc---------CCCeEEEEECCCceEEEEECCCCCceE---
Confidence 777777888886554332 2212 222322255555553 346788877777787 88876543211
Q ss_pred eeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeC
Q 001391 512 FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE 591 (1088)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spd 591 (1088)
.. .+...+. ..+++|||++|++++.++.|++||+..+.. . .....|...+.+++||||
T Consensus 374 ----l~-~~~~~~~--~~~~SpDG~~la~~~~~~~v~~~d~~tg~~------------~---~~~~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 374 ----FE-ENLGNVF--AMGVDRNGKFAVVANDRFEIMTVDLETGKP------------T---VIERSREAMITDFTISDN 431 (1045)
T ss_dssp ----CC-CCCCSEE--EEEECTTSSEEEEEETTSEEEEEETTTCCE------------E---EEEECSSSCCCCEEECTT
T ss_pred ----ec-CCcccee--eeEECCCCCEEEEECCCCeEEEEECCCCce------------E---EeccCCCCCccceEECCC
Confidence 11 1111122 256899999999999999999999975431 1 112257788999999999
Q ss_pred CCEEEEEcCCC----------cEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCC
Q 001391 592 DEVLFCGDLRG----------NLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD 661 (1088)
Q Consensus 592 g~~LatGs~dg----------~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~D 661 (1088)
|++|++++.++ .|++||+.++.. ..+.++ . ..+.++.|+ +++.+|+.++.+
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~--------------~~l~~~-~-~~~~~~~~s---pdG~~l~~~s~~ 492 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--------------FAATTE-N-SHDYAPAFD---ADSKNLYYLSYR 492 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--------------EECSCS-S-SBEEEEEEC---TTSCEEEEEESC
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCCcE--------------EEeeCC-C-cccCCceEc---CCCCEEEEEecc
Confidence 99999887754 899999875311 112222 2 457788888 778889999988
Q ss_pred CeEEEEEee
Q 001391 662 GCICYLEYD 670 (1088)
Q Consensus 662 g~i~iw~~~ 670 (1088)
+..+.|+..
T Consensus 493 ~~~~~~~~~ 501 (1045)
T 1k32_A 493 SLDPSPDRV 501 (1045)
T ss_dssp CCCCEECSS
T ss_pred cCCcCcchh
Confidence 888888753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=246.93 Aligned_cols=260 Identities=10% Similarity=0.136 Sum_probs=202.0
Q ss_pred CCCCCceEEecCCCc-----------eeeeeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCCC-------eeEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-----------YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPF 60 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-----------~~~~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~tg-------~~~~~~ 60 (1088)
+.||.|+||++.+.. |.++|++++|+ | + +.+|++|+ |+.|+|||+.++ +.+..+
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~--p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 127 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWC--PHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEEC--TTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeC--CCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence 468999999985531 67899999999 9 7 78999988 799999999988 667888
Q ss_pred eeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec--cCCCCcEEEE
Q 001391 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDV 138 (1088)
Q Consensus 61 ~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~I~~v 138 (1088)
.+|.. .|.+++|+ |+++ ..+++++.|+.|++||+.. .+.+..+ .+|.+.|.++
T Consensus 128 ~~h~~-~v~~~~~~-------p~~~--~~l~s~~~dg~i~iwd~~~---------------~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 128 EGHTK-RVGIVAWH-------PTAQ--NVLLSAGCDNVILVWDVGT---------------GAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp ECCSS-CEEEEEEC-------SSBT--TEEEEEETTSCEEEEETTT---------------TEEEEEECTTTCCSCEEEE
T ss_pred cCCCC-eEEEEEEC-------cCCC--CEEEEEcCCCEEEEEECCC---------------CCccEEEecCCCCCceEEE
Confidence 88766 79999999 6652 1444555699999999985 3456667 7899999999
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe-ccCCceeEEEEeeecCCCCCcEEEEE---ecCCeEEEEEeccCc
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEH 214 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~sg---~~dg~I~vwd~~~~~ 214 (1088)
+|+| ++++|++++.|+.|++||+.+++.+..+ ..+....+..+.+ ++++.+|++| +.|+.|++||+.+.
T Consensus 183 ~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~g~~~~~d~~i~iwd~~~~- 255 (402)
T 2aq5_A 183 DWSR---DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF---VSEGKILTTGFSRMSERQVALWDTKHL- 255 (402)
T ss_dssp EECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE---CSTTEEEEEEECTTCCEEEEEEETTBC-
T ss_pred EECC---CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE---cCCCcEEEEeccCCCCceEEEEcCccc-
Confidence 9999 9999999999999999999999998888 5555443455555 5788999999 79999999999811
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~~ 292 (1088)
..++... ..|...|.+++|+|+++++++ ++.|+.|++||+.+++.
T Consensus 256 -------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-- 302 (402)
T 2aq5_A 256 -------------------------------EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-- 302 (402)
T ss_dssp -------------------------------SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT--
T ss_pred -------------------------------cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc--
Confidence 1112222 357788999999999999865 55799999999988641
Q ss_pred CCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.+.......|...|.+++|++...+.++.++.+++|++.
T Consensus 303 -----~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~ 341 (402)
T 2aq5_A 303 -----FLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLH 341 (402)
T ss_dssp -----CEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEE
T ss_pred -----ceEeecccccCCcccceEEecccccceecceeEEEEEcC
Confidence 121112233668999999994322233567799999983
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-23 Score=244.41 Aligned_cols=205 Identities=13% Similarity=0.187 Sum_probs=167.0
Q ss_pred cCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcC--CCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDIS--NSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~--~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
++|.+.|++++|+| ++++| ++|+.|++|++||+. +++.+..+..+ ....+.++++ +|++.+|++|+.+|.
T Consensus 99 ~~~~~~v~~~~~s~---d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~---sp~~~~l~~~~~~g~ 172 (450)
T 2vdu_B 99 PPIYSYIRNLRLTS---DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI---AEDDTTVIIADKFGD 172 (450)
T ss_dssp -CCCCCEEEEEECT---TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE---CTTSSEEEEEETTSE
T ss_pred CccCCceEEEEEcC---CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE---cCCCCEEEEEeCCCc
Confidence 46777899999999 99986 899999999999999 88877776532 2234566666 688999999999999
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC---CCEEEEEECCCcEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSAR 281 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~---g~~l~s~s~Dg~v~ 281 (1088)
|++|++.+.+.. ......+.+|.+.|.+++|+|+ +++|++++.|+.|+
T Consensus 173 v~~~~~~~~~~~-----------------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 173 VYSIDINSIPEE-----------------------------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIK 223 (450)
T ss_dssp EEEEETTSCCCS-----------------------------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEE
T ss_pred EEEEecCCcccc-----------------------------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEE
Confidence 999998721110 0023355689999999999999 99999999999999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccC------------
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI------------ 347 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~------------ 347 (1088)
+||+.+++. +. ..+.+|...|.+++|+ +.+|++++.|++|++||+ +++.+..+..+.
T Consensus 224 vwd~~~~~~--------~~-~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 224 ISHYPQCFI--------VD-KWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp EEEESCTTC--------EE-EECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred EEECCCCce--------ee-eeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 999987532 32 1356899999999997 889999999999999999 788777775321
Q ss_pred ------------CCCeEEEEEcCCCCEEEEEe-CCCCEEEEEc
Q 001391 348 ------------GRGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (1088)
Q Consensus 348 ------------~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~ 377 (1088)
...|.+++++|++++|++++ .|+.|++|++
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 12699999999999999999 8999999999
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=269.79 Aligned_cols=255 Identities=17% Similarity=0.175 Sum_probs=201.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC--CCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~--tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|++++|+ |+ +++|++|+ ||.|+|||+. +++.+..+..|.+ .|.+++|++. ++++ .+++
T Consensus 8 H~~~V~~l~~s--~d----g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~-----~~~~---~l~s 72 (753)
T 3jro_A 8 HNELIHDAVLD--YY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-----KFGT---ILAS 72 (753)
T ss_dssp CCCCEEEECCC--SS----SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCT-----TSCS---EEEE
T ss_pred CcceeEEEEEC--CC----CCeEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCC-----CCCC---EEEE
Confidence 67899999999 99 88899887 7999999998 5577888888766 7999999932 2252 5555
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCce-
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
++.|++|++||+.... ...+..+.+|...|.+++|+| + +.++++|+.||.|++||+.++..
T Consensus 73 ~s~Dg~I~vwd~~~~~-------------~~~~~~~~~h~~~V~~v~~sp---~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 73 CSYDGKVLIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp EETTSCEEEEEEETTE-------------EEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred EeCCCeEEEEECCCCc-------------ccccccccCCCCCeEEEEECC---CCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 5669999999998642 447778889999999999999 8 89999999999999999987732
Q ss_pred -EEEeccCCceeEEEEeeecC----------CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 170 -ILEVHSPERCLLYSMKLWGD----------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~----------s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
...+..+ ...+.++.+.+. .+++..+++|+.||.|++||+.+..
T Consensus 137 ~~~~~~~~-~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~------------------------ 191 (753)
T 3jro_A 137 SPIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------------------ 191 (753)
T ss_dssp CCEEEECC-SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT------------------------
T ss_pred ceeEeecC-CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc------------------------
Confidence 3333333 334666666321 1158899999999999999998211
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCC---CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~---g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
........+.+|.+.|.+++|+|+ ++++++++.||.|++||+.++.. ..........+|...|++++
T Consensus 192 -----~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~l~ 261 (753)
T 3jro_A 192 -----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRAS 261 (753)
T ss_dssp -----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS-----CCBCCBSSSSCCSSCCCCEE
T ss_pred -----ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC-----cceeEEeccCCCCCceEEEE
Confidence 123566788899999999999999 89999999999999999988632 11111124566889999999
Q ss_pred EC--CCEEEEEeCCCcEEEEcCC
Q 001391 316 LT--DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 316 ~~--~~~l~sg~~Dg~i~vWd~~ 336 (1088)
|+ +.++++|+.||.|++|++.
T Consensus 262 ~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 262 WSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ECTTTCCEEEECSSSCEECCBCC
T ss_pred EcCCCCEEEEEcCCCEEEEEecC
Confidence 98 6799999999999999994
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-23 Score=240.06 Aligned_cols=273 Identities=12% Similarity=0.048 Sum_probs=214.5
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEe-----eeCCcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQ-----VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~-----~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..+.+++|+ |+ +.+++++. ++.|++||+.+++.+..+. .|.+ .|.+++|+ +++ .++
T Consensus 123 ~~~~~~~~s--~~----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~----~~~ 184 (433)
T 3bws_A 123 FQPKSVRFI--DN----TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG-FVETISIP-------EHN----ELW 184 (433)
T ss_dssp SCBCCCEES--SS----SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC-EEEEEEEG-------GGT----EEE
T ss_pred CCceEEEEe--CC----CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC-ceeEEEEc-------CCC----EEE
Confidence 346689999 87 77777776 5899999999998886433 3333 79999998 676 555
Q ss_pred EEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE-EEcCCcEEEEEcCCCce
Q 001391 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 92 a~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las-gs~Dg~V~iWd~~~~~~ 169 (1088)
++.+ |+.|++||++. .+.+..+..|...+.+++|+| +++.+++ ++.|+.|++||+.+++.
T Consensus 185 ~s~~~d~~v~~~d~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 185 VSQMQANAVHVFDLKT---------------LAYKATVDLTGKWSKILLYDP---IRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEGGGTEEEEEETTT---------------CCEEEEEECSSSSEEEEEEET---TTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEECCCCEEEEEECCC---------------ceEEEEEcCCCCCeeEEEEcC---CCCEEEEEecCCCcEEEEECCCCcE
Confidence 5554 89999999874 345667778999999999999 9987754 45799999999999988
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEe--------cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGT--------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~--------~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
+..+..+.. ...+++ ++++..+++++ .||.|++||+.
T Consensus 247 ~~~~~~~~~--~~~~~~---~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~------------------------------ 291 (433)
T 3bws_A 247 IRKTDKIGL--PRGLLL---SKDGKELYIAQFSASNQESGGGRLGIYSMD------------------------------ 291 (433)
T ss_dssp EEECCCCSE--EEEEEE---CTTSSEEEEEEEESCTTCSCCEEEEEEETT------------------------------
T ss_pred EEEecCCCC--ceEEEE---cCCCCEEEEEECCCCccccCCCeEEEEECC------------------------------
Confidence 877765433 455655 67888888877 48899999998
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--C
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D 318 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~ 318 (1088)
+++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++ .+ ....+...+.+++|+ +
T Consensus 292 ---~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~--------~~---~~~~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 292 ---KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK--------VQ---KSIPVFDKPNTIALSPDG 356 (433)
T ss_dssp ---TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE--------EE---EEEECSSSEEEEEECTTS
T ss_pred ---CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc--------EE---EEecCCCCCCeEEEcCCC
Confidence 44444433 566789999999999755 667899999999998753 22 223467789999998 5
Q ss_pred CEEEEEeC---------------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 001391 319 SFIITAGE---------------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1088)
Q Consensus 319 ~~l~sg~~---------------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~ 378 (1088)
.++++++. ||.|++||. +++.+..+..+. .+.+++|+|++++|++++. |+.|++|+++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN--QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 67877776 579999999 778787777643 5999999999999988875 9999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=241.92 Aligned_cols=315 Identities=14% Similarity=0.116 Sum_probs=196.1
Q ss_pred CCEEEEEeCCeEEEEECCC-------CeeEEE-EeeeCCcceEEEEeccccc-------------ccCCCccceeeEEEE
Q 001391 35 LPFLLAGSGSQVLLYDLEA-------GTLIRP-FQVFHGIRLHGISCNFINC-------------TEGSVSTRVTFEVAL 93 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~t-------g~~~~~-~~~~~~~~V~~i~~s~~~~-------------~~~~d~~~~~~~la~ 93 (1088)
..++++|.++.|++|+... +..... .....+.++..+.+++... ...+++ .++++
T Consensus 31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~las 106 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYS----LFLAC 106 (393)
T ss_dssp TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEE----EEEEE
T ss_pred CCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCC----CEEEE
Confidence 5688888899999998632 111111 1122334566776654310 001222 44555
Q ss_pred -ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc-----CCCCEEEEEEcCCcEEEEEcCCC
Q 001391 94 -FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----NGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 94 -~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~-----~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
+.|++|+|||+.... ......+..+.+|.++|++++|+|.. .|+++||||+.|++|+|||+.++
T Consensus 107 ~~~d~~v~lw~~~~~~----------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 107 VCQDNTVRLIITKNET----------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EETTSCEEEEEEETTE----------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred EeCCCcEEEEECCCCc----------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 459999999998643 01134566789999999999999732 26789999999999999999988
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
..+..+..+.. .+.+++|+ |++ .+|++|+.||+|++||+.+.+........ ... .....+..... ..
T Consensus 177 ~~~~~~~~~~~-~v~~v~~~---p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~----~~~--~~~~~~s~~~~--~~ 244 (393)
T 4gq1_A 177 GPILAGYPLSS-PGISVQFR---PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT----ELV--KNPWLLTLNTL--PL 244 (393)
T ss_dssp EEEEEEEECSS-CEEEEEEE---TTEEEEEEEEETTSEEEEEETTCCC--------------C--SCCCSEEEESG--GG
T ss_pred ceeeeecCCCC-CcEEEEEC---CCCCceEEecCCCCEEEEEECCCCccccccccc----CCc--ccceEEecccc--cc
Confidence 77766665544 35677774 544 58999999999999999854432211100 000 00001111000 11
Q ss_pred eeeEEEeCCCCCEEEEEEc-CCCCEEEEEECCCcEEEEEcCCCcccCCCCc-----ee--eec--eeeeccCcceEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSI-----EE--VGS--SVLYGHNARVWDCCL 316 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~s-p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-----~~--i~~--~~~~~h~~~I~~v~~ 316 (1088)
.......+|...|.++.|+ |+++.+++++.|+++++||+...+....... .. +.+ .....+...+ .+.+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 323 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACP 323 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEE
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEE
Confidence 2223456899999999986 7999999999999999999987543100000 00 000 0111111122 2233
Q ss_pred C---C-CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 317 T---D-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 317 ~---~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
. + .++++|+.||+|++||. +++....+..|.. +|++++|+|||++||+++.|| +.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3 2 36778889999999999 7788888888887 799999999999999998776 6677663
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=231.15 Aligned_cols=315 Identities=14% Similarity=0.083 Sum_probs=198.9
Q ss_pred EEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeee
Q 001391 48 LYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1088)
Q Consensus 48 vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (1088)
||++.+.+.+..+..|.. .|.+++|+ ||| .+|+++++..++||+++.. +....
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs-------~dg----~~la~g~~~~~~iw~~~~~---------------~~~~~ 55 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFN-------QDQ----SCLILSTLKSFEIYNVHPV---------------AHIMS 55 (355)
T ss_dssp ----------------CC-CCCEEEEC-------TTS----SEEEEECSSEEEEEEETTE---------------EEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEEC-------CCC----CEEEEEcCCEEEEEecCCc---------------ceeee
Confidence 567777777777777665 79999999 888 7888888888999998742 22222
Q ss_pred ccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~ 206 (1088)
. +...+..+++.+ +++.+ ++|+.|++|++||+.+++.+..+..+. .+.++.+ +++ .++++ .++.|+
T Consensus 56 ~--~~~~~~~~~~~~---~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~--~v~~v~~---~~~--~~~~~-~~~~i~ 122 (355)
T 3vu4_A 56 Q--EMRHLSKVRMLH---RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA--PVKDLFL---SRE--FIVVS-YGDVIS 122 (355)
T ss_dssp E--ECSCCCEEEECT---TSSEEEEECSSTTEEEEEETTTTEEEEEEECSS--CEEEEEE---CSS--EEEEE-ETTEEE
T ss_pred e--ecCCeEEEEEcC---CCCEEEEEECCccEEEEEECCCCcEEEEEECCC--ceEEEEE---cCC--EEEEE-EcCEEE
Confidence 2 122478888988 77766 567788999999999999988876443 4566665 333 33333 478999
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE--EECCCcEEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS--VSDDRSARIWE 284 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s--~s~Dg~v~iWd 284 (1088)
+||+.+. .+.+..+.. ....+++++ .+++. ++.||.|++||
T Consensus 123 i~d~~~~--------------------------------~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd 165 (355)
T 3vu4_A 123 VFKFGNP--------------------------------WKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITK 165 (355)
T ss_dssp EEESSTT--------------------------------CCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEE
T ss_pred EEECCCC--------------------------------ceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEE
Confidence 9999822 022222222 333455666 56665 58899999999
Q ss_pred cCCCcccCCCC-------cee-eeceeeeccCcceEEEEEC--CCEEEEEeCCCc-EEEEcC-CCceeEEEc-c-cCCCC
Q 001391 285 VRAEYWKDSDS-------IEE-VGSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIK-E-HIGRG 350 (1088)
Q Consensus 285 ~~~~~~~~~~~-------~~~-i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~-i~vWd~-~~~~~~~~~-~-h~~~~ 350 (1088)
+.++....... ..+ + ..+.+|...|++++|+ +.+|++|+.|++ |++||+ +++++..+. + |.+ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~--~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~ 242 (355)
T 3vu4_A 166 LQSSGSATTQDQGVQQKAILGKG--VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-D 242 (355)
T ss_dssp CCC------------------CC--EEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-C
T ss_pred CCCCCccccccccccccccCccc--EEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-c
Confidence 98754100000 011 3 3788999999999998 689999999998 999999 789999998 5 777 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCC---cccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEe
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG---SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 427 (1088)
|++++|+|++++|++++.|++|++||+...... .+........+...-.+.....+ .........++|
T Consensus 243 v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~ 313 (355)
T 3vu4_A 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS---------VDKHVRGCKIAW 313 (355)
T ss_dssp EEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC---------CCTTCCCCEEEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec---------cCCCCCceEEEE
Confidence 999999999999999999999999999543111 11110000000000000011111 112223467899
Q ss_pred ccCC-eEEEEecCCeEEEEEeccCC
Q 001391 428 TSED-TLYIATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 428 s~~~-~ll~~t~~g~i~~~~~~~~~ 451 (1088)
++++ .+++++.+|.+..+.+....
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9998 45566778888877665443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=261.73 Aligned_cols=253 Identities=17% Similarity=0.232 Sum_probs=201.2
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
..+.+|.+ .|.+++|+ |+++ .+++++.|++|+||++.... .+....+.+|.+.|++
T Consensus 3 ~~l~gH~~-~V~~l~~s-------~dg~---~latg~~dg~I~vwd~~~~~-------------~~~~~~l~~h~~~V~~ 58 (753)
T 3jro_A 3 VIANAHNE-LIHDAVLD-------YYGK---RLATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEGPVWR 58 (753)
T ss_dssp -----CCC-CEEEECCC-------SSSC---CEEEEETTTEEEEEEEETTE-------------EEEEEEECCCSSCEEE
T ss_pred eecccCcc-eeEEEEEC-------CCCC---eEEEEECCCcEEEEecCCCC-------------CccceeccCCcCceEE
Confidence 45667666 79999999 7773 55555669999999998433 5678889999999999
Q ss_pred EEEecccCC--CCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCC--CcEEEEEecCCeEEEEEec
Q 001391 138 VCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 138 v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~I~vwd~~ 211 (1088)
++|+| + +++|++|+.||+|++||+.+++ .+..+..+. ..+.++.+ +|+ +..+++|+.||.|++||+.
T Consensus 59 l~~s~---~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-~~V~~v~~---sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 59 VDWAH---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQW---APHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEECC---TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEE---CCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEecC---CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC-CCeEEEEE---CCCCCCCEEEEEeCCCcEEEEEee
Confidence 99998 6 8999999999999999999886 455554443 34667776 566 8899999999999999998
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-------------CCCEEEEEECCC
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-------------CGSKLVSVSDDR 278 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-------------~g~~l~s~s~Dg 278 (1088)
+. .......+.+|...|.+++|+| ++.++++++.||
T Consensus 132 ~~-------------------------------~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 132 EN-------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp SS-------------------------------SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred cC-------------------------------CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence 21 1234456789999999999999 589999999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-----CCEEEEEeCCCcEEEEcC-CCc-----eeEEEcccC
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGS-DGK-----QLKMIKEHI 347 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-----~~~l~sg~~Dg~i~vWd~-~~~-----~~~~~~~h~ 347 (1088)
.|++||+.++.. ..... ..+.+|...|.+++|+ +.+|++++.||+|++||+ .++ .+.....|.
T Consensus 181 ~I~iwd~~~~~~----~~~~~--~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 254 (753)
T 3jro_A 181 LVKIWKYNSDAQ----TYVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254 (753)
T ss_dssp CEEEEEEETTTT----EEEEE--EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred eEEEEeccCCcc----cceee--eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence 999999987532 01223 2778999999999998 358999999999999999 332 223334566
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ .|++++|+|++++|++|+.||.|++|++..
T Consensus 255 ~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 255 D-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp S-CCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred C-ceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 6 799999999999999999999999999863
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=234.83 Aligned_cols=272 Identities=8% Similarity=-0.040 Sum_probs=198.0
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
+.+|++|+ |++|++||+.+++.+..+.. ..|..+.++ | .+++++.|++|++|+...... .
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~~-------~------~~~s~s~D~~i~~w~~~~~~~---~ 108 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGEH-------P------AIISRGPCNRLLLLYPGNQIT---I 108 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCCC-------C------SEEEECSTTEEEEEETTTEEE---E
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeeeC-------C------ceEEecCCCeEEEEEccCceE---E
Confidence 67888887 89999999999999888872 257777777 4 245555689999998763110 0
Q ss_pred CCCccccccceeee-ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC
Q 001391 114 YQPETCVNLSLVQS-LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~-l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (1088)
+ .....+.+.. ..+|.+.|.+++|+|. .+++++++|+.|++|++||+.+++.......+....+.++++ +|+
T Consensus 109 ~---~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~---~pd 181 (343)
T 3lrv_A 109 L---DSKTNKVLREIEVDSANEIIYMYGHNE-VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL---HKD 181 (343)
T ss_dssp E---ETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE---CTT
T ss_pred e---ecCCcceeEEeecCCCCCEEEEEcCCC-CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEE---CCC
Confidence 0 0001222333 3478889999999872 257899999999999999999998876665554444666766 688
Q ss_pred CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee-EEEeC-CCCCEEEEEEcCCCCE
Q 001391 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLVG-HEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 193 ~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~g-h~~~V~~v~~sp~g~~ 270 (1088)
+.+|++|+.||.|++||++ ++..+ ..+.+ |.+.|.+++|+|++.+
T Consensus 182 g~~lasg~~dg~i~iwd~~---------------------------------~~~~~~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLS---------------------------------SPDQASSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp SCEEEEECTTSCEEEEESS---------------------------------CTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred CCEEEEEcCCCEEEEEECC---------------------------------CCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence 9999999999999999998 44444 56777 9999999999999999
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce--EEEEEC--CCEEEEEeC-CCcEEEEcC-CCceeEEEc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV--WDCCLT--DSFIITAGE-DCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I--~~v~~~--~~~l~sg~~-Dg~i~vWd~-~~~~~~~~~ 344 (1088)
|++++++ .|++||+++.+. ...+. .+..|...+ .+++|+ +.+|++++. |+.+++|++ .+......
T Consensus 229 l~s~~~~-~v~iwd~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 229 MVVECDQ-TVVCFDLRKDVG-----TLAYP--TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp EEEEESS-BEEEEETTSSTT-----CBSSC--CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred EEEEeCC-eEEEEEcCCCCc-----ceeec--ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-
Confidence 9999955 999999998644 22222 222233444 368998 689999988 999999998 33322222
Q ss_pred ccCCCCeEEEEEcC---CCCEEEEEeCCCCEEEEEcC
Q 001391 345 EHIGRGIWRCLYDS---LSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~---dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
. ++..++|.+ +...+++++.||.+.++-..
T Consensus 300 ---~-~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 300 ---D-EESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---E-EEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ---c-CceeEecCccccccceeEEEecCCceEEEEec
Confidence 2 577888888 88899999999999988653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-21 Score=225.04 Aligned_cols=261 Identities=11% Similarity=0.047 Sum_probs=206.5
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~ 113 (1088)
.++++++ ++.|++||+.+++++..+..+. .+.+++|+ |+++ .++++. .++.|++||+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s-------~dg~---~l~~~~~~d~~i~v~d~~~------- 63 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS--NPMGAVIS-------PDGT---KVYVANAHSNDVSIIDTAT------- 63 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEEC-------TTSS---EEEEEEGGGTEEEEEETTT-------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC--CcceEEEC-------CCCC---EEEEECCCCCeEEEEECCC-------
Confidence 4666666 7999999999999999888754 48999999 7773 444555 589999999874
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (1088)
.+.+..+..+. .|.+++|+| ++++|+.+ +.|+.|++||+.+++.+..+..+.. ..++++ +++
T Consensus 64 --------~~~~~~~~~~~-~v~~~~~sp---dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~---s~d 126 (391)
T 1l0q_A 64 --------NNVIATVPAGS-SPQGVAVSP---DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS--PLGLAL---SPD 126 (391)
T ss_dssp --------TEEEEEEECSS-SEEEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS--EEEEEE---CTT
T ss_pred --------CeEEEEEECCC-CccceEECC---CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC--cceEEE---CCC
Confidence 34555555554 899999999 99977554 4679999999999988877765543 456665 577
Q ss_pred CcEE-EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l-~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+..+ ++++.++.|++||+. +++.+..+..| ..+.+++|+|+++++
T Consensus 127 g~~l~~~~~~~~~v~~~d~~---------------------------------~~~~~~~~~~~-~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTV---------------------------------TKAVINTVSVG-RSPKGIAVTPDGTKV 172 (391)
T ss_dssp SSEEEEEETTTTEEEEEETT---------------------------------TTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred CCEEEEEeCCCCEEEEEECC---------------------------------CCcEEEEEecC-CCcceEEECCCCCEE
Confidence 8766 788889999999998 56666666665 457999999999987
Q ss_pred -EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe---CCCcEEEEcC-CCceeEEEc
Q 001391 272 -VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG---EDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 272 -~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~---~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
++++.|+.|++||+.+++. + ....+...+.+++|+ +.++++++ .++.|++||+ +++.+..+.
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~--------~---~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~ 241 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSV--------I---DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241 (391)
T ss_dssp EEEETTTTEEEEEETTTTEE--------E---EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeE--------E---EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe
Confidence 6778899999999988532 2 233456678999998 56788777 6899999999 677888887
Q ss_pred ccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEcCC
Q 001391 345 EHIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l-~tg~~Dg~I~iwd~~~ 379 (1088)
.|. .+.+++|+|++++| ++++.|+.|++||+..
T Consensus 242 ~~~--~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 242 VGP--DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp CCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cCC--CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 765 48899999999877 6778899999999954
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-21 Score=221.87 Aligned_cols=261 Identities=8% Similarity=0.034 Sum_probs=202.5
Q ss_pred CCCCCceEEecCCCce------eeeeEEEEEeccCCCCCCCCEE-EEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~------~~~V~~v~fs~~pd~~~~~~~l-aag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.|+.|++||+.+++. ...+.+++|+ |+ +++| +++. ++.|++||+.+++++..+..+. .+.+++
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~ 80 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGSNPMGAVIS--PD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVA 80 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEeecCCCcceEEEC--CC----CCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceE
Confidence 4689999999999882 2458899999 99 7776 5554 7999999999999999888654 699999
Q ss_pred ecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE-
Q 001391 73 CNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL- 150 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l- 150 (1088)
|+ |+++ .++++.. ++.|++||+... +.+..+.. ...+.+++|+| +++.|
T Consensus 81 ~s-------pdg~---~l~~~~~~~~~v~v~d~~~~---------------~~~~~~~~-~~~~~~~~~s~---dg~~l~ 131 (391)
T 1l0q_A 81 VS-------PDGK---QVYVTNMASSTLSVIDTTSN---------------TVAGTVKT-GKSPLGLALSP---DGKKLY 131 (391)
T ss_dssp EC-------TTSS---EEEEEETTTTEEEEEETTTT---------------EEEEEEEC-SSSEEEEEECT---TSSEEE
T ss_pred EC-------CCCC---EEEEEECCCCEEEEEECCCC---------------eEEEEEeC-CCCcceEEECC---CCCEEE
Confidence 99 7773 4445554 699999999853 34444444 35689999999 99877
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
++++.|+.|++||+.+++.+..+..+.. ...+.+ ++++..+ ++++.++.|++||+.
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~---~~dg~~l~~~~~~~~~v~~~d~~------------------ 188 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGRS--PKGIAV---TPDGTKVYVANFDSMSISVIDTV------------------ 188 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCSS--EEEEEE---CTTSSEEEEEETTTTEEEEEETT------------------
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCCC--cceEEE---CCCCCEEEEEeCCCCEEEEEECC------------------
Confidence 6788899999999999988887765543 345555 5777766 677889999999998
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE---CCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---DDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s---~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
+.+.+..+. |...+.+++|+|+++++++++ .++.|++||+.+++ .+. .+..
T Consensus 189 ---------------~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~--------~~~--~~~~ 242 (391)
T 1l0q_A 189 ---------------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--------ITA--RIPV 242 (391)
T ss_dssp ---------------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--------EEE--EEEC
T ss_pred ---------------CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe--------EEE--EEec
Confidence 455555554 566899999999999998888 78999999998753 332 3444
Q ss_pred cCcceEEEEEC--CCEE-EEEeCCCcEEEEcC-CCceeEEEcccCC
Q 001391 307 HNARVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
|. .+.+++|+ +.++ ++++.|+.|++||+ +++.+..+..|..
T Consensus 243 ~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 243 GP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp CS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 43 57889998 4555 67789999999999 7888877766654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=233.89 Aligned_cols=309 Identities=12% Similarity=0.050 Sum_probs=189.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCcccc--------------ccceeeeccCCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCV--------------NLSLVQSLPRLS 132 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~--------------~~~~~~~l~~h~ 132 (1088)
..+.+.|.. ..|++. .+++++.++.|++|+............+.... ..........|.
T Consensus 17 ~p~~~~w~~----~~~~~~---~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (393)
T 4gq1_A 17 RPYTTTWCS----QSPSCS---NLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD 89 (393)
T ss_dssp CEEEEEECT----TSGGGT---TEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred CCeEEEEeC----CCCCCC---CEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence 456666641 113332 67787889999999876433111100000000 000011112233
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE-----eccCCceeEEEEeeec-----CCCCCcEEEEEecC
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE-----VHSPERCLLYSMKLWG-----DNLEALRIASGTIY 202 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~-----~~~~~~~~~~s~~~~~-----~s~~~~~l~sg~~d 202 (1088)
..+....+.+ ++.+||+|+.|++|+|||+.+++.... +.+| ...+.+++|.+ ...++.+||+|+.|
T Consensus 90 ~~~~~~~~~~---~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 90 GDGNVNSSPV---YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp -------CCE---EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred CCcceeecCC---CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCC-CCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3333334444 667899999999999999998866432 2333 34577777743 22378999999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSAR 281 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~ 281 (1088)
++|+|||+. ...++..+.+|...|.+++|+|++. +|++++.|++|+
T Consensus 166 ~tv~~Wd~~---------------------------------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~ 212 (393)
T 4gq1_A 166 CTLIIWRLT---------------------------------DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR 212 (393)
T ss_dssp SEEEEEEEE---------------------------------TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CeEEEEECC---------------------------------CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence 999999998 5667777888999999999999875 799999999999
Q ss_pred EEEcCCCcccCCCCce---------------eeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEE
Q 001391 282 IWEVRAEYWKDSDSIE---------------EVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKM 342 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~---------------~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~ 342 (1088)
+||+.+++........ ........+|...+.++.|. +..|++++.|+++++||+ .++....
T Consensus 213 ~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~ 292 (393)
T 4gq1_A 213 IFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE 292 (393)
T ss_dssp EEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------
T ss_pred EEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce
Confidence 9999886542110000 00001345788889999986 689999999999999999 5555555
Q ss_pred EcccCCCCeEEEE------------------EcC--CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEE
Q 001391 343 IKEHIGRGIWRCL------------------YDS--LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (1088)
Q Consensus 343 ~~~h~~~~V~~l~------------------~~~--dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1088)
+..|.. .+..+. ++| ++.++++|+.||+|++||......
T Consensus 293 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-------------------- 351 (393)
T 4gq1_A 293 ISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-------------------- 351 (393)
T ss_dssp ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--------------------
T ss_pred EeeecC-ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--------------------
Confidence 555544 233333 322 334678888999999999853211
Q ss_pred eeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc
Q 001391 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1088)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~ 449 (1088)
......+...|++++|+|+|++|+...++.+..+++..
T Consensus 352 ---------~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 352 ---------NSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp ---------CEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred ---------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 11112345689999999999999988888888777654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=235.64 Aligned_cols=257 Identities=18% Similarity=0.270 Sum_probs=198.0
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC----------CeeEEEEeeeCCcceEEEEecccccccCCCc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------GTLIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t----------g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~ 84 (1088)
|.++|++++|+ |+ .+.+|++|+ +|.|+|||+.+ .+.+..+..|.. .|.+++|+ |++
T Consensus 127 h~~~v~~l~~~--p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~-------~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYM--PQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWN-------PNL 193 (430)
T ss_dssp ESSCCSEEEEE--TT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEEC-------TTS
T ss_pred CCCcEEEEEEC--CC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeC-------CCC
Confidence 67889999999 85 146888887 79999999987 677888888766 79999999 555
Q ss_pred cceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 85 TRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 85 ~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
+ .+|++++ |+.|++|++..... ..........+.+|...|.+++|+| .++.+|++++.|+.|++||
T Consensus 194 ~---~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 194 N---GYLLSASDDHTICLWDINATPK--------EHRVIDAKNIFTGHTAVVEDVAWHL--LHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp T---TEEEEECTTSCEEEEETTSCCB--------GGGEEECSEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEE
T ss_pred C---CeEEEEeCCCeEEEEeCCCCCC--------CCceeccceeecCCCCCEeeeEEeC--CCCCEEEEEeCCCeEEEEE
Confidence 2 2555554 89999999985320 0001233566779999999999999 2457899999999999999
Q ss_pred cCCC---ceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 164 ISNS---SIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 164 ~~~~---~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
+.++ +.+..+..+. ..+.++++ ++++. ++++|+.||.|++||++.
T Consensus 261 ~~~~~~~~~~~~~~~~~-~~v~~i~~---~p~~~~~l~tg~~dg~v~vwd~~~--------------------------- 309 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDAHT-AEVNCLSF---NPYSEFILATGSADKTVALWDLRN--------------------------- 309 (430)
T ss_dssp TTCSCSSSCSEEEECCS-SCEEEEEE---CSSCTTEEEEEETTSEEEEEETTC---------------------------
T ss_pred CCCCCCCcceeEeecCC-CCeEEEEe---CCCCCCEEEEEeCCCeEEEEeCCC---------------------------
Confidence 9877 4555555443 34667776 45565 799999999999999981
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCC------CCceeeeceeeeccCcceE
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDS------DSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~------~~~~~i~~~~~~~h~~~I~ 312 (1088)
...++..+.+|...|.+++|+|+++ ++++++.|+.|++||+........ ...+.+ ....+|...|.
T Consensus 310 -----~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~ 382 (430)
T 2xyi_A 310 -----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL--FIHGGHTAKIS 382 (430)
T ss_dssp -----TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEE--EECCCCSSCEE
T ss_pred -----CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceE--EEcCCCCCCce
Confidence 2456788889999999999999985 699999999999999987321000 001223 26778999999
Q ss_pred EEEEC--CC-EEEEEeCCCcEEEEcCC
Q 001391 313 DCCLT--DS-FIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 313 ~v~~~--~~-~l~sg~~Dg~i~vWd~~ 336 (1088)
+++|+ +. +|++++.||.|++|++.
T Consensus 383 ~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 383 DFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 99998 34 89999999999999984
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-22 Score=223.89 Aligned_cols=273 Identities=11% Similarity=0.031 Sum_probs=193.2
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++.+|++|+.||+|++||+.+++.+..+.. ..+.++.+ .|+ +++++.|++|++|+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~---~~~---~~s~s~D~~i~~w~~~-------------- 103 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGE---HPA---IISRGPCNRLLLLYPG-------------- 103 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCC---CCS---EEEECSTTEEEEEETT--------------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeee---CCc---eEEecCCCeEEEEEcc--------------
Confidence 778999999999999999999988877751 11222332 344 9999999999999987
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
..+.+|+.. ....+..+. +|.+.|.+++|+| +++++++++.|++|++||+.+++. +. .
T Consensus 104 ---------~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--------~~-~ 164 (343)
T 3lrv_A 104 ---------NQITILDSK-TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--------YI-V 164 (343)
T ss_dssp ---------TEEEEEETT-TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--------EE-E
T ss_pred ---------CceEEeecC-CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--------EE-E
Confidence 233344433 333344444 7889999999999 999999999999999999998532 22 1
Q ss_pred eeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCcee-EEEcc-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQL-KMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~-~~~~~-h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
....|...|.+++|+ +.+|++|+.||.|++||+ +++.+ ..+.. |.+ +|.+++|+|++.+|++++ |+.|++||+
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence 223456689999998 679999999999999999 66766 78888 887 799999999999999999 559999999
Q ss_pred CCC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce--EEEEeccCCeEEEE-ec-CCeEEEEEeccCCc
Q 001391 378 QAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV--RCLHLTSEDTLYIA-TN-HGYLYHTKLCDMDS 452 (1088)
Q Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~~l~~s~~~~ll~~-t~-~g~i~~~~~~~~~~ 452 (1088)
+.. .+..+.... .+...+ .+++|+|++.++++ +. ++.+..|++... .
T Consensus 243 ~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~-~ 294 (343)
T 3lrv_A 243 RKDVGTLAYPTYT---------------------------IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK-T 294 (343)
T ss_dssp TSSTTCBSSCCCB---------------------------C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT-T
T ss_pred CCCCcceeecccc---------------------------cccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc-c
Confidence 642 222221100 011111 57999999987776 33 777876665332 2
Q ss_pred ceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 453 VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 453 ~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
..|.. .++..+.+.+. ..+...+++++.||.+.++-..
T Consensus 295 ~~~~~-------~~~~~~~~~~~-----~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 295 KNWTK-------DEESALCLQSD-----TADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CSEEE-------EEEEECCC---------CCCCEEEEEEETTEEEEEEEC
T ss_pred cceEe-------cCceeEecCcc-----ccccceeEEEecCCceEEEEec
Confidence 33533 23444444331 1244788999999999887544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=221.54 Aligned_cols=296 Identities=11% Similarity=0.038 Sum_probs=214.3
Q ss_pred eEEEEECCCC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.+||..++ +.+..+..+. .+.+++|+ |++ .++++++ ++.|++||+..... ..
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~--~~~~~~~s-------~~~----~~~~~~~~~~~i~~~d~~~g~~----------~~ 158 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF--QPKSVRFI-------DNT----RLAIPLLEDEGMDVLDINSGQT----------VR 158 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS--CBCCCEES-------SSS----EEEEEBTTSSSEEEEETTTCCE----------EE
T ss_pred EEEEECCCCCcceEEEEEcCCC--CceEEEEe-------CCC----eEEEEeCCCCeEEEEECCCCeE----------ee
Confidence 4444555445 5666666533 47799999 754 5555554 78899999885330 00
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE-EEEe
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-ASGT 200 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~ 200 (1088)
......+.+|...|.+++|+| ++.++++++.|+.|++||+.+++.+..+..+.. .+.++++ ++++..+ ++++
T Consensus 159 ~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~l~~~~~ 231 (433)
T 3bws_A 159 LSPPEKYKKKLGFVETISIPE---HNELWVSQMQANAVHVFDLKTLAYKATVDLTGK-WSKILLY---DPIRDLVYCSNW 231 (433)
T ss_dssp ECCCHHHHTTCCEEEEEEEGG---GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS-SEEEEEE---ETTTTEEEEEET
T ss_pred ecCcccccccCCceeEEEEcC---CCEEEEEECCCCEEEEEECCCceEEEEEcCCCC-CeeEEEE---cCCCCEEEEEec
Confidence 011114568999999999999 999999999999999999999988888764433 3445555 4677766 4556
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-----
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS----- 275 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s----- 275 (1088)
.++.|++||+. +++.+..+..+ ..+.+++|+|+++++++++
T Consensus 232 ~~~~i~~~d~~---------------------------------~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 232 ISEDISVIDRK---------------------------------TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp TTTEEEEEETT---------------------------------TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCT
T ss_pred CCCcEEEEECC---------------------------------CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCc
Confidence 89999999998 55555555544 4599999999999999888
Q ss_pred ---CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC-CCceeEEEcccCC
Q 001391 276 ---DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 276 ---~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
.|+.|++||+.+++. + ....|...+.+++|+ +. ++++++.|+.+++||+ +++.+..+. +..
T Consensus 278 ~~~~dg~i~~~d~~~~~~--------~---~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~ 345 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKL--------I---DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFD 345 (433)
T ss_dssp TCSCCEEEEEEETTTTEE--------E---EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSS
T ss_pred cccCCCeEEEEECCCCcE--------E---eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCC
Confidence 588999999987532 2 334566688899998 33 5677799999999999 667776665 444
Q ss_pred CCeEEEEEcCCCCEEEEEeC---------------CCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCcccee
Q 001391 349 RGIWRCLYDSLSSLLVTAGF---------------DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~~---------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1088)
.+.+++|+|++++|++++. ||.|++||+..... +..+
T Consensus 346 -~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-----------------~~~~---------- 397 (433)
T 3bws_A 346 -KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-----------------KEFW---------- 397 (433)
T ss_dssp -SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-----------------EEEE----------
T ss_pred -CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE-----------------EEEe----------
Confidence 5999999999998888876 57999999853210 1011
Q ss_pred eccCCCCceEEEEeccCCeEEEE-e-cCCeEEEEEe
Q 001391 414 LTDSKSEYVRCLHLTSEDTLYIA-T-NHGYLYHTKL 447 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s~~~~ll~~-t-~~g~i~~~~~ 447 (1088)
.. ...+.+++|+|++++++. + .++.+..|++
T Consensus 398 --~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 398 --EA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp --EC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred --cC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 11 235899999999976654 4 3788886655
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=213.51 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=172.7
Q ss_pred CCceEEecCCC---c-------eeeeeEEEEEeccCCCCCCCCEEEEEeC--CeEEEEEC--C-C----CeeEEEEeeeC
Q 001391 4 KDLSEWRLDVG---Q-------YLGEISALCFVHLPSHLSSLPFLLAGSG--SQVLLYDL--E-A----GTLIRPFQVFH 64 (1088)
Q Consensus 4 ~~i~iWdl~~g---~-------~~~~V~~v~fs~~pd~~~~~~~laag~d--~~I~vwd~--~-t----g~~~~~~~~~~ 64 (1088)
.+|++|+..++ + +..+|..|.|+ || . ..++.++-+ ..-.|+-+ . . ++.+.. .++.
T Consensus 63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~-~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s-~g~~ 136 (356)
T 2w18_A 63 DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPV--PD--V-YNLVCVALGNLEIREIRALFCSSDDESEKQVLLK-SGNI 136 (356)
T ss_dssp SEEEEEEESSSSBEEEEEEEECCSSCEEEECCC--TT--C-CSCEEEEECSSSEEEEEEECC------CCEEEEE-EEEE
T ss_pred ceEEEcccCCCccceeeEEEeccCceeEEEEEc--Cc--c-cceeeeeeccccccceEEEEECCCccccccEEEe-CCCe
Confidence 46999999998 3 44689999999 87 2 234433332 22222222 1 1 222222 2222
Q ss_pred CcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 65 ~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
.+|.++ +++ .++.+++ |+.|++|++... .+.+..+.+|...+..++|+
T Consensus 137 -~~v~~l----------~~g----~lv~ss~~g~d~~V~~~~~s~d--------------G~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 137 -KAVLGL----------TKR----RLVSSSGTLSDQQVEVMTFAED--------------GGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp -EEEEEE----------TTT----EEEEEESSSTTCEEEEEEECTT--------------SCEEEEEEECCCSSCEEEEE
T ss_pred -EEEEec----------CCC----cEEEecccCCCCcEEEEEECCC--------------CceeeeeccCCCceeeEEee
Confidence 234432 345 6777766 999999999753 36677888999999999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc--eeEEEEeeecCCCCCcEE------------EEEecCCeEEE
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER--CLLYSMKLWGDNLEALRI------------ASGTIYNEIIV 207 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~--~~~~s~~~~~~s~~~~~l------------~sg~~dg~I~v 207 (1088)
|.+.++.+|++|+.|++|+|||+.+++.+.++..+.. ..+.+++| +|++.++ ++|+.|++|++
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf---SpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY---SEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE---EETTEEEEEEC------------CCEEEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE---CCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 9666889999999999999999999999999875432 12333344 4667665 66888899999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-----eCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
||.. +++.+..+ .+|.+.+.+..++ +.++++++.|++|+|
T Consensus 265 Wd~~---------------------------------tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkI 309 (356)
T 2w18_A 265 INPK---------------------------------TTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAI 309 (356)
T ss_dssp EETT---------------------------------TTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred EECC---------------------------------CCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEE
Confidence 9987 45554443 3777766555544 889999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceE-EEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVW-DCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~-~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
||+.+++ .+. ++.+|...+. +++|+ +.+|++|+.|++|+|||+
T Consensus 310 WDl~tGk--------~l~--tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 310 WDLLLGQ--------CTA--LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EETTTCS--------EEE--EECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCc--------EEE--EecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999964 443 7778887765 58998 579999999999999985
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-20 Score=213.51 Aligned_cols=303 Identities=8% Similarity=0.048 Sum_probs=215.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-----CC----eEEEEEC--CCCeeE--EEEeeeCCcceEEEEeccccc-------
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-----GS----QVLLYDL--EAGTLI--RPFQVFHGIRLHGISCNFINC------- 78 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-----d~----~I~vwd~--~tg~~~--~~~~~~~~~~V~~i~~s~~~~------- 78 (1088)
.|...+|. +. +..++++|. +| +|++||+ .+++++ ..+.++.. .+..+++++...
T Consensus 64 ~~~~~~w~--~~---g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 64 EVQPAAWS--AL---GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQ-WLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp GCCHHHHH--TT---TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGG-GHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHH--hc---CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChh-HHHHHHHHHHHHHHHHHcC
Confidence 44555566 54 235777775 46 8999999 999887 44776554 577776663100
Q ss_pred ccCCCccceeeEEEEECC------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 79 TEGSVSTRVTFEVALFGE------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
..++.+. .++.++.+ +.|++||++. .....+.+|...|.+++|+| +|+.|++
T Consensus 138 ~~~~~~~---~l~~~s~~~~~~~~~~i~i~d~~g----------------~~~~~l~~~~~~v~~~~~Sp---dg~~la~ 195 (415)
T 2hqs_A 138 IKGAFRT---RIAYVVQTNGGQFPYELRVSDYDG----------------YNQFVVHRSPQPLMSPAWSP---DGSKLAY 195 (415)
T ss_dssp SCCCTTC---EEEEEEECSSSSCCEEEEEEETTS----------------CSCEEEEEESSCEEEEEECT---TSSEEEE
T ss_pred CCCcCCC---EEEEEEecCCCCccceEEEEcCCC----------------CCCEEEeCCCCcceeeEEcC---CCCEEEE
Confidence 0011121 44444433 7999999873 23455667899999999999 9999999
Q ss_pred EEcCC---cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCe--EEEEEeccCccccCCCCCCCcc
Q 001391 153 GCSDN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNE--IIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 153 gs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~--I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
++.|+ .|++||+.+++... +..+. ..+.++++ +|++..|+ +++.++. |++||+.
T Consensus 196 ~s~~~~~~~i~~~d~~tg~~~~-l~~~~-~~~~~~~~---spdg~~la~~~~~~g~~~i~~~d~~--------------- 255 (415)
T 2hqs_A 196 VTFESGRSALVIQTLANGAVRQ-VASFP-RHNGAPAF---SPDGSKLAFALSKTGSLNLYVMDLA--------------- 255 (415)
T ss_dssp EECTTSSCEEEEEETTTCCEEE-EECCS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEEEETT---------------
T ss_pred EEecCCCcEEEEEECCCCcEEE-eecCC-CcccCEEE---cCCCCEEEEEEecCCCceEEEEECC---------------
Confidence 99875 99999999987754 33332 23556665 78898777 6666654 8889987
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCcccCCCCceeeecee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg--~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
+++ ...+..|...+.+++|+|||++|++++. ++ .|++||+.+++. ..
T Consensus 256 ------------------~~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----------~~ 305 (415)
T 2hqs_A 256 ------------------SGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----------QR 305 (415)
T ss_dssp ------------------TCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----------EE
T ss_pred ------------------CCC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----------EE
Confidence 333 3566788899999999999999998886 44 677778877532 14
Q ss_pred eeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCC---CEEEE
Q 001391 304 LYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS---AIKVH 375 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg---~I~iw 375 (1088)
+..|...+.+++|+ +.+|++++.+ ..|++||+.+.....+..+. .+.+++|+|+|++|++++.|+ .|.+|
T Consensus 306 l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 306 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEE
Confidence 45566788899998 5778877764 58999999544445666664 599999999999999988877 79999
Q ss_pred EcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC
Q 001391 376 QFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1088)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 431 (1088)
|+.+...+. +..+.+.|++++|+|..
T Consensus 384 d~~g~~~~~------------------------------l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 384 STDGRFKAR------------------------------LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ETTSCCEEE------------------------------CCCSSSEEEEEEECCCC
T ss_pred ECCCCcEEE------------------------------eeCCCCCCcCCcccccc
Confidence 986543322 23344678999999853
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-19 Score=213.17 Aligned_cols=333 Identities=11% Similarity=0.059 Sum_probs=230.2
Q ss_pred EEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEE
Q 001391 24 CFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLF 102 (1088)
Q Consensus 24 ~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw 102 (1088)
+|+ |+ +.+++++. +++|.+||..+++++.++...+. +++++|+ |||+ .+++++.|++|++|
T Consensus 144 ~~~--p~----~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~s-------pdg~---~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLD--LP----NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMS-------ASGR---YLLVIGRDARIDMI 205 (543)
T ss_dssp CCC--GG----GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEEC-------TTSC---EEEEEETTSEEEEE
T ss_pred ccC--CC----CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEEC-------CCCC---EEEEECCCCeEEEE
Confidence 377 77 77888877 69999999999999999985443 8999999 8884 56666668999999
Q ss_pred EeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC-CCCEEEEEE-cCCcEEEEEcCCCceEEEeccCC---
Q 001391 103 ELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE--- 177 (1088)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~-d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~--- 177 (1088)
|+.... .+.+..+. +...+..++|+|... |+++|++++ .+++|.+||..+++.+..+..+.
T Consensus 206 D~~~~t-------------~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 206 DLWAKE-------------PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp ETTSSS-------------CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred ECcCCC-------------CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence 993111 45566666 445689999986211 678888887 48999999999999988876421
Q ss_pred -------ceeEEEEeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee-
Q 001391 178 -------RCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN- 248 (1088)
Q Consensus 178 -------~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~- 248 (1088)
...+.++.+ +++ ..++++...++.|.+||.. ....
T Consensus 272 ~~~~~~~~~~v~~i~~---s~~~~~~~vs~~~~g~i~vvd~~---------------------------------~~~~l 315 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIA---SHEHPEFIVNVKETGKVLLVNYK---------------------------------DIDNL 315 (543)
T ss_dssp SSCCEESCCCEEEEEE---CSSSSEEEEEETTTTEEEEEECT---------------------------------TSSSC
T ss_pred CccccccCCceEEEEE---CCCCCEEEEEECCCCeEEEEEec---------------------------------CCCcc
Confidence 113444444 454 4567778889999999997 2211
Q ss_pred -eEEEeCCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 249 -LFRLVGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 249 -~~~~~gh~~~V~~v~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+..+ .+...+..++|+|+|++++++ ..+++|.+||..+++. ...+. .....|..+...+... +.+++++
T Consensus 316 ~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l-----~~~i~-~g~~ph~g~g~~~~~p~~g~~~~s~ 388 (543)
T 1nir_A 316 TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-----SALVD-VGKTPHPGRGANFVHPKYGPVWSTS 388 (543)
T ss_dssp EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EEEEE-CSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-----EEeec-cCCCCCCCCCcccCCCCCccEEEec
Confidence 1233 356778899999999987655 4689999999998643 22121 0112366554444332 3466776
Q ss_pred e-CCCcEEEEcC-C-------CceeEEEcccCCCCeEEEEEcCCCCEEEEEe-------CCCCEEEEEcCCCCCCcccCC
Q 001391 325 G-EDCTCRVWGS-D-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-------FDSAIKVHQFQAFLPGSLESH 388 (1088)
Q Consensus 325 ~-~Dg~i~vWd~-~-------~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-------~Dg~I~iwd~~~~~~~~~~~~ 388 (1088)
. .|++|.+||. + .+.++++..|.+ ++..++++|++++|++++ .+++|.+||+.+....
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~----- 462 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK----- 462 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC-----
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC-----
Confidence 5 6899999999 5 688999999887 688999999999999987 2789999999643110
Q ss_pred ccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe------cCCeEEEEEeccCCccee
Q 001391 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT------NHGYLYHTKLCDMDSVNW 455 (1088)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t------~~g~i~~~~~~~~~~~~~ 455 (1088)
.+.+.+. ....+..+...+..++|+|+|+.+..+ .++.|. +++..+.+.
T Consensus 463 ---------~~~~~v~------~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~---v~D~~t~~~ 517 (543)
T 1nir_A 463 ---------YQVLPIA------EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV---VVDDKTLKL 517 (543)
T ss_dssp ---------CEEECHH------HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEE---EEETTTTEE
T ss_pred ---------eEEeech------hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEE---EEECCCceE
Confidence 0011000 000012234578999999999665543 246676 456555553
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-19 Score=213.81 Aligned_cols=299 Identities=10% Similarity=0.030 Sum_probs=216.7
Q ss_pred CCCCceEEecCCCceee------eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEEC--CCCeeEEEEeeeCCcceEEEE
Q 001391 2 GKKDLSEWRLDVGQYLG------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDL--EAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~~------~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~--~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
.|++|++||..+++... .+.+++|+ || +++|++++ +++|++||+ .+++++.++.. +..+.+++
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~s--pd----g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~~p~~va 228 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTGYAVHISRMS--AS----GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GIEARSVE 228 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECSTTEEEEEEC--TT----SCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CSEEEEEE
T ss_pred CCCeEEEEECCCceEEEEEecCcccceEEEC--CC----CCEEEEECCCCeEEEEECcCCCCcEEEEEec--CCCcceEE
Confidence 57899999999987322 37799999 99 89999988 799999999 89999998885 33589999
Q ss_pred ecccccccCC----CccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccC----------CCC-cEE
Q 001391 73 CNFINCTEGS----VSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR----------LSH-WVF 136 (1088)
Q Consensus 73 ~s~~~~~~~~----d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------h~~-~I~ 136 (1088)
|+ | ||+ .++++. .+++|.|||..+ +++++.+.. |.+ .+.
T Consensus 229 ~s-------p~~~~dg~---~l~v~~~~~~~v~v~D~~t---------------~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 229 SS-------KFKGYEDR---YTIAGAYWPPQFAIMDGET---------------LEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp EC-------CSTTCTTT---EEEEEEEESSEEEEEETTT---------------CCEEEEEECCEECSSSCCEESCCCEE
T ss_pred eC-------CCcCCCCC---EEEEEEccCCeEEEEeccc---------------cccceeecccCcccCccccccCCceE
Confidence 99 7 873 343333 489999999874 333443332 333 899
Q ss_pred EEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEE--EeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEecc
Q 001391 137 DVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDW 212 (1088)
Q Consensus 137 ~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~ 212 (1088)
++.++| ++. ++++...++.|.+||+.+.+.+. .+.. ......+.+ +|++.++++ +..+++|.+||..
T Consensus 284 ~i~~s~---~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~--~~~~~~~~~---spdg~~l~va~~~~~~v~v~D~~- 354 (543)
T 1nir_A 284 AIIASH---EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA--APFLHDGGW---DSSHRYFMTAANNSNKVAVIDSK- 354 (543)
T ss_dssp EEEECS---SSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC--CSSCCCEEE---CTTSCEEEEEEGGGTEEEEEETT-
T ss_pred EEEECC---CCCEEEEEECCCCeEEEEEecCCCcceeEEecc--CcCccCceE---CCCCCEEEEEecCCCeEEEEECC-
Confidence 999999 765 56677789999999998866543 3321 222334444 688887655 4568999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC----CCCCEEEEEEcCC-CCEEEEEE-CCCcEEEEEcC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG----HEGSIFRIEWSSC-GSKLVSVS-DDRSARIWEVR 286 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g----h~~~V~~v~~sp~-g~~l~s~s-~Dg~v~iWd~~ 286 (1088)
+++.+..+.. |.+....+ ++|+ +..++++. .|++|.+||+.
T Consensus 355 --------------------------------tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 355 --------------------------------DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp --------------------------------TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred --------------------------------CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeC
Confidence 5666666653 65544444 4677 56667765 68999999998
Q ss_pred CCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-------CCCcEEEEcC-CCcee-EEE--------cccC
Q 001391 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-------EDCTCRVWGS-DGKQL-KMI--------KEHI 347 (1088)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-------~Dg~i~vWd~-~~~~~-~~~--------~~h~ 347 (1088)
+.... ....+.++ ++.+|...+..++++ +.+|++++ .+++|+|||+ +++.. ..+ ..+.
T Consensus 402 ~~~~~-~~~~~~v~--~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 402 PKNHP-QYAWKKVA--ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp TTTCT-TTBTSEEE--EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred CCCCc-hhcCeEEE--EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 73210 00124554 778888888899998 57888876 2789999999 66655 444 2344
Q ss_pred CCCeEEEEEcCCCCEEEEEe-----CCCCEEEEEcCC
Q 001391 348 GRGIWRCLYDSLSSLLVTAG-----FDSAIKVHQFQA 379 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~-----~Dg~I~iwd~~~ 379 (1088)
. .++.+.|+|+|+.|+.+. .|+.|.+||..+
T Consensus 479 ~-~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 479 K-RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp C-EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred C-ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 4 699999999999888662 479999999854
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=202.88 Aligned_cols=271 Identities=11% Similarity=-0.003 Sum_probs=194.5
Q ss_pred CceEEec--CCCceeee---------eEEEEEeccCC-----------CCCCCCEEEEEeC------CeEEEEECCCCee
Q 001391 5 DLSEWRL--DVGQYLGE---------ISALCFVHLPS-----------HLSSLPFLLAGSG------SQVLLYDLEAGTL 56 (1088)
Q Consensus 5 ~i~iWdl--~~g~~~~~---------V~~v~fs~~pd-----------~~~~~~~laag~d------~~I~vwd~~tg~~ 56 (1088)
+++|||+ .+++.... +..++++ +. ..-+.+++.++.+ ++|++||+.. ..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~ 170 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHT--ASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YN 170 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHH--HHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CS
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHH--HHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CC
Confidence 8999999 88874322 2233333 20 0001344444443 6999999974 55
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC---CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE---KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd---~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
+..+..+.. .|.+++|+ |||+ .++.++.+ ..|++||+.... . ..+..|..
T Consensus 171 ~~~l~~~~~-~v~~~~~S-------pdg~---~la~~s~~~~~~~i~~~d~~tg~---------------~-~~l~~~~~ 223 (415)
T 2hqs_A 171 QFVVHRSPQ-PLMSPAWS-------PDGS---KLAYVTFESGRSALVIQTLANGA---------------V-RQVASFPR 223 (415)
T ss_dssp CEEEEEESS-CEEEEEEC-------TTSS---EEEEEECTTSSCEEEEEETTTCC---------------E-EEEECCSS
T ss_pred CEEEeCCCC-cceeeEEc-------CCCC---EEEEEEecCCCcEEEEEECCCCc---------------E-EEeecCCC
Confidence 667777665 79999999 8883 44444445 499999998532 2 24557888
Q ss_pred cEEEEEEecccCCCCEEE-EEEcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-CC--eEEE
Q 001391 134 WVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YN--EIIV 207 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~la-sgs~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg--~I~v 207 (1088)
.+.+++|+| ||+.|+ +++.|+. |++||+.+++. ..+..+. ....++.+ +|++..|+.++. ++ .|.+
T Consensus 224 ~~~~~~~sp---dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~~---spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 224 HNGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR-SNNTEPTW---FPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp CEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEE
T ss_pred cccCEEEcC---CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC-CcccceEE---CCCCCEEEEEECCCCCcEEEE
Confidence 999999999 999887 6666655 99999988876 3444333 34556665 788998887775 45 5666
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC---CcEEEEE
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---RSARIWE 284 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D---g~v~iWd 284 (1088)
||+. ++. ...+..|...+.+++|+|+|++|++++.+ ..|++||
T Consensus 296 ~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 296 VNIN---------------------------------GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp EETT---------------------------------SSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred EECC---------------------------------CCC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 6766 222 33455677889999999999999988764 5899999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcccCCCCeEEEEEcCC
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
+.+++. ..+..|. .+.+++|+ +.+|++++.++ .|++||++++....+..|.+ .|++++|+|.
T Consensus 342 ~~~~~~-----------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~-~v~~~~~~~~ 408 (415)
T 2hqs_A 342 LATGGV-----------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG-QVKFPAWSPY 408 (415)
T ss_dssp TTTCCE-----------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSS-EEEEEEECCC
T ss_pred CCCCCE-----------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCC-CCcCCccccc
Confidence 988543 1344454 78999998 57888888777 79999998888999999988 6999999996
Q ss_pred C
Q 001391 360 S 360 (1088)
Q Consensus 360 g 360 (1088)
.
T Consensus 409 ~ 409 (415)
T 2hqs_A 409 L 409 (415)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-18 Score=212.57 Aligned_cols=309 Identities=11% Similarity=-0.001 Sum_probs=200.3
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe--CC-----eEEEEECCCCeeEEEEeeeCC-----------------------c
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS--GS-----QVLLYDLEAGTLIRPFQVFHG-----------------------I 66 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~--d~-----~I~vwd~~tg~~~~~~~~~~~-----------------------~ 66 (1088)
...|.+++|| || +++|++++ ++ .|++||+.+++....+..+.. .
T Consensus 36 ~~~~~~~~~S--pd----G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVA--PD----GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEEC--TT----SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCE
T ss_pred CCCCCCceEe--cC----CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcccc
Confidence 3569999999 99 88888876 56 899999999987766654322 2
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|..++|| ||| ..|++..++.|.+||+.... ......+..|...+.+++|+| |
T Consensus 110 ~v~~~~~S-------pDg----~~l~~~~~~~i~~~d~~~~~-------------~~~~~~l~~~~~~~~~~~~SP---D 162 (741)
T 2ecf_A 110 GIVDYQWS-------PDA----QRLLFPLGGELYLYDLKQEG-------------KAAVRQLTHGEGFATDAKLSP---K 162 (741)
T ss_dssp ESCCCEEC-------TTS----SEEEEEETTEEEEEESSSCS-------------TTSCCBCCCSSSCEEEEEECT---T
T ss_pred CcceeEEC-------CCC----CEEEEEeCCcEEEEECCCCC-------------cceEEEcccCCcccccccCCC---C
Confidence 37899999 888 56666667999999998531 002344567788899999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCcee---------------EEEEeeecCCCCCcEEEEEecCC-eEEEEEe
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL---------------LYSMKLWGDNLEALRIASGTIYN-EIIVWKV 210 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~---------------~~s~~~~~~s~~~~~l~sg~~dg-~I~vwd~ 210 (1088)
|++|+.++ ++.|++||+.+++.......+.... ..++.+ +||+..|++++.|+ .+..|+.
T Consensus 163 G~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~---SpDg~~l~~~~~d~~~~~~~~~ 238 (741)
T 2ecf_A 163 GGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWW---APDDSAIAYARIDESPVPVQKR 238 (741)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEE---CTTSSCEEEEEEECTTSCEEEE
T ss_pred CCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEE---CCCCCEEEEEEEcCCCCceEec
Confidence 99999887 5699999999887654433322211 123333 78999998887664 1111110
Q ss_pred ccCccccCCC--CCCCccCCCCCCCCceeEecccccc-eeeeEEEe--CCCCCEEEEEEcCCCCEEEEEEC-----CCcE
Q 001391 211 DWEHVAPLLN--SPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSD-----DRSA 280 (1088)
Q Consensus 211 ~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~-----Dg~v 280 (1088)
. ...+... ........+.......+.+|+.. + ++...... .|...+..++| |||++|+.++. +..|
T Consensus 239 ~--~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 239 Y--EVYADRTDVIEQRYPAAGDANVQVKLGVISPA-EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp E--EECSSCEEEEEEECCBTTSCCCEEEEEEECSS-TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred C--CCCCCcccceEeecCCCCCCCCeeEEEEEECC-CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence 0 0000000 00000000111111122222221 2 33222222 57888999999 99999987654 5689
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCc----ceEEEEEC--CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNA----RVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~----~I~~v~~~--~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~ 352 (1088)
++||+.+++. .. ....+.. .+.+++|+ +.++++++.||.+++|.+ +++ ...+..|.. .|.
T Consensus 315 ~~~d~~~g~~--------~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~-~v~ 382 (741)
T 2ecf_A 315 VEVTLASNQQ--------RV--LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW-SVD 382 (741)
T ss_dssp EEEETTTCCE--------EE--EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS-CEE
T ss_pred EEEECCCCce--------EE--EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce-EEE
Confidence 9999988643 11 2222322 34578888 568889999998777765 566 777877766 588
Q ss_pred EE-EEcCCCCEEEE-EeCCC--CEEEEEcC
Q 001391 353 RC-LYDSLSSLLVT-AGFDS--AIKVHQFQ 378 (1088)
Q Consensus 353 ~l-~~~~dg~~l~t-g~~Dg--~I~iwd~~ 378 (1088)
.+ .|+|+++.|+. ++.|+ .+++|++.
T Consensus 383 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 383 ELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred eEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 87 59999987754 45555 89999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=217.63 Aligned_cols=326 Identities=9% Similarity=0.005 Sum_probs=216.2
Q ss_pred ceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCC--cceEEEEecccccccCCC
Q 001391 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFINCTEGSV 83 (1088)
Q Consensus 6 i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~--~~V~~i~~s~~~~~~~~d 83 (1088)
+.+.++..+.....+.+++|+ || +++++++.+++|++||+.+++....+..+.. ..|..++|| ||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~s--pd----g~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S-------pD 71 (723)
T 1xfd_A 5 VTVEDLFSEDFKIHDPEAKWI--SD----TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-------PD 71 (723)
T ss_dssp CCHHHHTCTTTCCCCCCCCBS--SS----SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-------TT
T ss_pred ccHHHHhCCCCcccccccEEc--CC----CcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEEC-------CC
Confidence 555666667666678899999 99 8888876689999999999988777765443 148999999 88
Q ss_pred ccceeeEEEEECC---------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 84 STRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 84 ~~~~~~~la~~gd---------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
|+ .++.++.+ +.+.+||+.... .+.+....+|...+..++|+| ||+.||.++
T Consensus 72 g~---~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~~~~~~~~~~~~~~SP---dG~~la~~~ 132 (723)
T 1xfd_A 72 RE---YALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------PQSLDPPEVSNAKLQYAGWGP---KGQQLIFIF 132 (723)
T ss_dssp SS---EEEEEESCCCCSSSCCCSEEEEEESSSCC-------------CEECCCTTCCSCCCSBCCBCS---STTCEEEEE
T ss_pred CC---EEEEEecCccceeecceeeEEEEECCCCc-------------eEeccCCccccccccccEECC---CCCEEEEEE
Confidence 83 34444433 789999998643 233444456777799999999 999999987
Q ss_pred cCCcEEEEEcCCCceEEEeccCCcee-----------------EEEEeeecCCCCCcEEEEEecC-CeEEEEEeccCccc
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCL-----------------LYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVA 216 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~s~~~~~l~sg~~d-g~I~vwd~~~~~~~ 216 (1088)
. +.|++||+.+++.......+.... ..++.+ +||+..|++++.+ +.+.+|++......
T Consensus 133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~---SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW---SPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE---CTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEE---CCCCCEEEEEEECCCccceEEeeccCCc
Confidence 5 899999999887765554432211 123444 7899999887755 46777876522111
Q ss_pred cCCC-CCCCccCCCCCCCCceeEecccccceeeeEEEeCC------CCCEEEEEEcCCCCEEEEEEC----CCcEEEEEc
Q 001391 217 PLLN-SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSD----DRSARIWEV 285 (1088)
Q Consensus 217 ~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh------~~~V~~v~~sp~g~~l~s~s~----Dg~v~iWd~ 285 (1088)
.... .......+|.......+.+|+.. ++.....+..+ ...+..++|+|||+++++.+. +..|++||+
T Consensus 209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred CCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 1000 11112233333334577777764 33333455544 678999999999998877653 357999999
Q ss_pred CCCcccCCCCceeeeceeeeccCcceE----EEEEC--CCEEEE--EeCCC------cEEEEc-CCCce---eEEEcccC
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVW----DCCLT--DSFIIT--AGEDC------TCRVWG-SDGKQ---LKMIKEHI 347 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~----~v~~~--~~~l~s--g~~Dg------~i~vWd-~~~~~---~~~~~~h~ 347 (1088)
.+++. .. .....+...+. .++|+ +..|+. ...++ .|.+|| ..+.. ...+..+.
T Consensus 288 ~~g~~--------~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 358 (723)
T 1xfd_A 288 TTGVC--------TK-KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD 358 (723)
T ss_dssp TTCCE--------EE-EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS
T ss_pred CCCcc--------eE-EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC
Confidence 88643 11 01122333333 67888 454543 55677 578888 44444 55555433
Q ss_pred CCCeEE-EEEcCCCCEEEEEeCC---CCEEEEEcC
Q 001391 348 GRGIWR-CLYDSLSSLLVTAGFD---SAIKVHQFQ 378 (1088)
Q Consensus 348 ~~~V~~-l~~~~dg~~l~tg~~D---g~I~iwd~~ 378 (1088)
. .+.. ++|+|||+.|+..+.+ +.+++|++.
T Consensus 359 ~-~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 359 W-DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp S-CEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred e-EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 3 3554 6899999998766655 789999984
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=181.32 Aligned_cols=250 Identities=11% Similarity=0.041 Sum_probs=181.4
Q ss_pred CCCCCceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC-CeeEEEEeeeCCcceEEEEe
Q 001391 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~ 73 (1088)
+.|++|++||+.+++ +.+.|.+++|+ |+ +++|+++.++.|++||+.+ ++.......+....|.+++|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWS--PD----GKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEEC--TT----SSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEEC--CC----CCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 357889999999987 45679999999 99 8999999999999999999 88776666554457899999
Q ss_pred cccccccCCCccceeeEEEEE--CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 74 NFINCTEGSVSTRVTFEVALF--GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~--gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
+ |+++ .++++. .++..+||.++... .....+..+. .+.+++|+| +++.|+
T Consensus 93 s-------pdg~---~l~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~-~~~~~~~sp---dg~~l~ 144 (297)
T 2ojh_A 93 S-------PDGA---LYAISDKVEFGKSAIYLLPSTG--------------GTPRLMTKNL-PSYWHGWSP---DGKSFT 144 (297)
T ss_dssp C-------TTSS---EEEEEECTTTSSCEEEEEETTC--------------CCCEECCSSS-SEEEEEECT---TSSEEE
T ss_pred C-------CCCC---EEEEEEeCCCCcceEEEEECCC--------------CceEEeecCC-CccceEECC---CCCEEE
Confidence 9 8873 444445 24577777776432 1122333333 489999999 999777
Q ss_pred -EEEcCCcEEEEEcCC-CceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 152 -IGCSDNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 152 -sgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
+++.|+.+++|++.. ......+..+. ..+.++.+ ++++..|+.++ .++.+.+|++..
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~---s~dg~~l~~~~~~~~~~~i~~~~~---------------- 204 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSGVETRLTHGE-GRNDGPDY---SPDGRWIYFNSSRTGQMQIWRVRV---------------- 204 (297)
T ss_dssp EEEEETTEEEEEEEETTTCCEEECCCSS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEEEET----------------
T ss_pred EEECCCCceEEEEEECCCCcceEcccCC-CccccceE---CCCCCEEEEEecCCCCccEEEECC----------------
Confidence 788899999999643 22333333332 23455555 67888777655 589999999861
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-----------CcEEEEEcCCCcccCCCCce
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-----------RSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D-----------g~v~iWd~~~~~~~~~~~~~ 297 (1088)
.......+..|...+..++|+|++++|++++.+ +.|.+||+.+++. .
T Consensus 205 ----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~ 262 (297)
T 2ojh_A 205 ----------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV------E 262 (297)
T ss_dssp ----------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC------E
T ss_pred ----------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc------e
Confidence 233455667788889999999999999888766 5699999987543 2
Q ss_pred eeeceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
.+. .+.+|...+.+++|+ +..|++++.+.
T Consensus 263 ~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLF--DLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEE--EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eee--ccCCCCcccccceECCCCCEEEEEEecc
Confidence 232 455788889999998 56777776553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=200.13 Aligned_cols=291 Identities=8% Similarity=0.039 Sum_probs=199.1
Q ss_pred CCCCceEEecCCCcee-------------------------eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCee
Q 001391 2 GKKDLSEWRLDVGQYL-------------------------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL 56 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~-------------------------~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~ 56 (1088)
.|+ | +||+.+|+.. ..|.+++|+ || +.++.+.++.|++||+.+++.
T Consensus 43 ~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s--pd-----~~~~~~~~~~i~~~d~~~~~~ 113 (706)
T 2z3z_A 43 GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA--GR-----GLVVLFTQGGLVGFDMLARKV 113 (706)
T ss_dssp TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEET--TT-----TEEEEEETTEEEEEETTTTEE
T ss_pred CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEEC--CC-----CeEEEEECCEEEEEECCCCce
Confidence 355 8 9999988651 459999999 97 455666789999999999876
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc-----CCCCCCCCCCccccccceeeeccCC
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF-----ELSPNSQYQPETCVNLSLVQSLPRL 131 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~h 131 (1088)
..... +.. .+..++|| ||| ..|++..++.|.+|++.. .. .......+
T Consensus 114 ~~l~~-~~~-~~~~~~~S-------pdG----~~la~~~~~~i~v~~~~~~~~~~g~---------------~~~~~~~~ 165 (706)
T 2z3z_A 114 TYLFD-TNE-ETASLDFS-------PVG----DRVAYVRNHNLYIARGGKLGEGMSR---------------AIAVTIDG 165 (706)
T ss_dssp EEEEC-CTT-CCTTCEEC-------TTS----SEEEEEETTEEEEEECBCTTSCCCC---------------CEESCSCC
T ss_pred EEccC-Ccc-cccCCcCC-------CCC----CEEEEEECCeEEEEecCcccccCCC---------------cEEeccCC
Confidence 54433 333 68899999 888 567777899999999986 32 11111112
Q ss_pred --------------CCcEEEEEEecccCCCCEEEEEE---------------------------------cCCcEEEEEc
Q 001391 132 --------------SHWVFDVCFLKVCNGNRSLAIGC---------------------------------SDNSIRVWDI 164 (1088)
Q Consensus 132 --------------~~~I~~v~f~p~~~d~~~lasgs---------------------------------~Dg~V~iWd~ 164 (1088)
...+.+++|+| ||++|++++ .+..|.+||+
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~Sp---Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSP---KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECT---TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred CCCeEcccchhhhhcCCCceEEECC---CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 23368999999 999999987 4567999999
Q ss_pred CCCceEEEecc-CCceeEEEEeeecCCCCCcEEEEEecCC-----eEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 165 SNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYN-----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 165 ~~~~~~~~~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~dg-----~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
.+++....... .....+.++.+ +||+..|++++.++ .|.+||+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~~~~~~v~~~d~~--------------------------- 292 (706)
T 2z3z_A 243 ATGKTVYLQTGEPKEKFLTNLSW---SPDENILYVAEVNRAQNECKVNAYDAE--------------------------- 292 (706)
T ss_dssp TTTEEEECCCCSCTTCEEEEEEE---CTTSSEEEEEEECTTSCEEEEEEEETT---------------------------
T ss_pred CCCceEeeccCCCCceeEeeEEE---ECCCCEEEEEEeCCCCCeeEEEEEECC---------------------------
Confidence 98876543322 22334556665 78999998877765 89999987
Q ss_pred ecccccceeeeEEEe--CCCC---CEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 239 LQDQQHTAVNLFRLV--GHEG---SIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~--gh~~---~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
++.....+. .+.. .+..++|+| +|+++++++.|+.+++|.+... ...+. .+..|...+
T Consensus 293 ------~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-------~~~~~--~l~~~~~~v 357 (706)
T 2z3z_A 293 ------TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-------GRLIR--QVTKGEWEV 357 (706)
T ss_dssp ------TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-------SCEEE--ECCCSSSCE
T ss_pred ------CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-------CCEEE--ecCCCCeEE
Confidence 331111111 2222 246789999 9999999999999999988631 12232 556677777
Q ss_pred EE-EEEC--CCEEE-EEeCCC----cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEcCC
Q 001391 312 WD-CCLT--DSFII-TAGEDC----TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD----SAIKVHQFQA 379 (1088)
Q Consensus 312 ~~-v~~~--~~~l~-sg~~Dg----~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D----g~I~iwd~~~ 379 (1088)
.. ++|+ +..|+ ++..++ .|..|+..+.....+. |.. .+.+++|+|||++|+....+ +.|.+||+.+
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~-~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PES-GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSS-SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCC-ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 76 7898 45555 444554 6667777444455554 444 69999999999988776544 4599999854
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-17 Score=204.11 Aligned_cols=291 Identities=13% Similarity=0.122 Sum_probs=208.4
Q ss_pred CceEEecCCCce---------e----------------------eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC
Q 001391 5 DLSEWRLDVGQY---------L----------------------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA 53 (1088)
Q Consensus 5 ~i~iWdl~~g~~---------~----------------------~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t 53 (1088)
+|++||+.+++. . ..|.+++|| || +++|+++.++.|++||+.+
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S--pD----g~~l~~~~~~~i~~~d~~~ 138 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS--PD----AQRLLFPLGGELYLYDLKQ 138 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC--TT----SSEEEEEETTEEEEEESSS
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC--CC----CCEEEEEeCCcEEEEECCC
Confidence 799999998861 1 348899999 99 9999999999999999998
Q ss_pred Ce--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC
Q 001391 54 GT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL 131 (1088)
Q Consensus 54 g~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h 131 (1088)
+. .+..+..+.. .+..++|| ||| ..|+...++.|.+|++.... .......+
T Consensus 139 ~~~~~~~~l~~~~~-~~~~~~~S-------PDG----~~la~~~~~~i~~~d~~~g~---------------~~~~~~~~ 191 (741)
T 2ecf_A 139 EGKAAVRQLTHGEG-FATDAKLS-------PKG----GFVSFIRGRNLWVIDLASGR---------------QMQLTADG 191 (741)
T ss_dssp CSTTSCCBCCCSSS-CEEEEEEC-------TTS----SEEEEEETTEEEEEETTTTE---------------EEECCCCC
T ss_pred CCcceEEEcccCCc-ccccccCC-------CCC----CEEEEEeCCcEEEEecCCCC---------------EEEeccCC
Confidence 83 3344554444 69999999 888 67777778899999987532 11111222
Q ss_pred CC----------------cEEEEEEecccCCCCEEEEEEcCC---------------------------------cEEEE
Q 001391 132 SH----------------WVFDVCFLKVCNGNRSLAIGCSDN---------------------------------SIRVW 162 (1088)
Q Consensus 132 ~~----------------~I~~v~f~p~~~d~~~lasgs~Dg---------------------------------~V~iW 162 (1088)
.. .+.+++|+| ||++|++++.|+ .|.+|
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~Sp---Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAP---DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECT---TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred ccceeccccceeeeeccccccceEECC---CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 22 247899999 999999988766 78899
Q ss_pred EcCC-CceEEEecc-CCceeEEEEeeecCCCCCcEEEEEec-----CCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 163 DISN-SSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 163 d~~~-~~~~~~~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~-----dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
|+.+ ++....... .....+.++++ +|+..|+.+.. +..|.+||+.
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~----pDg~~l~~~~~~~~~~~~~i~~~d~~------------------------ 320 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW----RDPQHLSFQRQSRDQKKLDLVEVTLA------------------------ 320 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE----EETTEEEEEEEETTSSEEEEEEEETT------------------------
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe----CCCCEEEEEEecccCCeEEEEEEECC------------------------
Confidence 9988 776544322 23334555544 57888876543 5779999987
Q ss_pred eeEecccccceeeeEEEeCCCC----CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 236 CFKLQDQQHTAVNLFRLVGHEG----SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh~~----~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
+++....+..|.. .+..++|+|||+++++++.|+.++||.+... .. .. .+..|...+
T Consensus 321 ---------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-------~~-~~--~l~~~~~~v 381 (741)
T 2ecf_A 321 ---------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-------GK-AA--ALTHGNWSV 381 (741)
T ss_dssp ---------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-------SC-EE--ESCCSSSCE
T ss_pred ---------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-------CC-ee--eeeecceEE
Confidence 4444444444433 4568999999999999999998888887632 12 22 666777788
Q ss_pred EEE-EEC--CCEE-EEEeCCC--cEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEcCC
Q 001391 312 WDC-CLT--DSFI-ITAGEDC--TCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD----SAIKVHQFQA 379 (1088)
Q Consensus 312 ~~v-~~~--~~~l-~sg~~Dg--~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D----g~I~iwd~~~ 379 (1088)
..+ .|+ +..| ++++.++ .+++|++ .++....+.. .. .+.+++|+||+++|+....+ +.+.+|+..+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~-~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP-GMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC-SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC-CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 877 487 4555 5566666 8999998 4666777766 34 58999999999988776544 4678888755
Q ss_pred C
Q 001391 380 F 380 (1088)
Q Consensus 380 ~ 380 (1088)
.
T Consensus 460 ~ 460 (741)
T 2ecf_A 460 E 460 (741)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-16 Score=174.63 Aligned_cols=285 Identities=16% Similarity=0.210 Sum_probs=185.4
Q ss_pred CCCCceEEecC-CCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe-C-CeEEEEECC--CCe--eEEEEeeeCCc
Q 001391 2 GKKDLSEWRLD-VGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-G-SQVLLYDLE--AGT--LIRPFQVFHGI 66 (1088)
Q Consensus 2 ~d~~i~iWdl~-~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~-d-~~I~vwd~~--tg~--~~~~~~~~~~~ 66 (1088)
.|+.|++||+. ++. +.+.+.+++|+ |+ +++|+++. + +.|++|++. +++ .+..+.. ..
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pd----g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~- 84 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS--PD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PG- 84 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC--TT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SS-
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEEC--CC----CCEEEEeecCCCeEEEEEecCCCCceeecccccc-CC-
Confidence 57899999995 332 33467899999 99 88888877 4 899999997 555 3444444 23
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
.+..++|+ |+++ .++++.. ++.|.+|++.... ..+....+..+ ..+.+++|+|
T Consensus 85 ~~~~~~~s-------~dg~---~l~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~-~~~~~~~~s~--- 138 (343)
T 1ri6_A 85 SLTHISTD-------HQGQ---FVFVGSYNAGNVSVTRLEDGL------------PVGVVDVVEGL-DGCHSANISP--- 138 (343)
T ss_dssp CCSEEEEC-------TTSS---EEEEEETTTTEEEEEEEETTE------------EEEEEEEECCC-TTBCCCEECT---
T ss_pred CCcEEEEc-------CCCC---EEEEEecCCCeEEEEECCCCc------------cccccccccCC-CCceEEEECC---
Confidence 68999999 7773 4545554 7899999995111 13344444444 4589999999
Q ss_pred CCCEEEEEE-cCCcEEEEEcCC-CceEE----EeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEeccCccccC
Q 001391 146 GNRSLAIGC-SDNSIRVWDISN-SSIIL----EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 146 d~~~lasgs-~Dg~V~iWd~~~-~~~~~----~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~~~~~~~ 218 (1088)
++++|++++ .++.|++||+.+ ++... .+..+.......+.+ ++++..+++ +..++.|.+|++.....
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~pdg~~l~~~~~~~~~i~~~~~~~~~g--- 212 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF---HPNEQYAYCVNELNSSVDVWELKDPHG--- 212 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEESSCTTS---
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE---CCCCCEEEEEeCCCCEEEEEEecCCCC---
Confidence 999888887 899999999987 65432 223333334445555 678886654 45889999999861000
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEe----C--CCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCccc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----G--HEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----g--h~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~ 291 (1088)
.......+. + ....+..++|+|++++++. +..++.|++|++.....
T Consensus 213 --------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~- 265 (343)
T 1ri6_A 213 --------------------------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS- 265 (343)
T ss_dssp --------------------------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-
T ss_pred --------------------------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC-
Confidence 011111221 1 1346778999999998774 55789999999983110
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-CCCcEEEEcC---CCc--eeEEEcccCCCCeEEEEEcCCCC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGK--QLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~---~~~--~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
..+.+. ....+.. +.+++|+ +.+|++++ .++.+.+|++ +++ .+..+... ....+++|.++.+
T Consensus 266 ---~~~~~~--~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g--~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 266 ---VLSKEG--FQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG--QGPMWVVVNAHEG 335 (343)
T ss_dssp ---CEEEEE--EEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS--SSCCEEEEEEEC-
T ss_pred ---ceEEee--eecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC--CCCeeEEEEcccC
Confidence 013332 3333333 8889998 56777777 6899999965 343 23333332 2356777776543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-15 Score=170.72 Aligned_cols=266 Identities=11% Similarity=0.035 Sum_probs=193.7
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe--------CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS--------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~--------d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
..+..++|+ |+ +++|+++. ++.|.+||..+++.+..+.... .+.+++|+ |+++ .
T Consensus 41 ~~~~~~~~s--~d----g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s-------~dg~---~ 102 (353)
T 3vgz_A 41 KGAYEMAYS--QQ----ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATIN-------NTTQ---T 102 (353)
T ss_dssp SSEEEEEEE--TT----TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEE-------TTTT---E
T ss_pred cCccceEEC--CC----CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEEC-------CCCC---E
Confidence 457789999 98 77887766 4689999999999998887633 47899999 7773 4
Q ss_pred EEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC---------cEEEEEEecccCCCCEEEEEE--cCC
Q 001391 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH---------WVFDVCFLKVCNGNRSLAIGC--SDN 157 (1088)
Q Consensus 90 ~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---------~I~~v~f~p~~~d~~~lasgs--~Dg 157 (1088)
++++.. ++.|.+||+... +.+..+..+.. .+.+++|+| +++++++++ .++
T Consensus 103 l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTG---------------EVKGRLVLDDRKRTEEVRPLQPRELVADD---ATNTVYISGIGKES 164 (353)
T ss_dssp EEEEETTTTEEEEEETTTC---------------CEEEEEESCCCCCCSSCCCCEEEEEEEET---TTTEEEEEEESSSC
T ss_pred EEEEecCCCEEEEEeCCCC---------------eeEEEEecCCCccccccCCCCCceEEECC---CCCEEEEEecCCCc
Confidence 555544 799999998753 23333333322 378999999 999877765 478
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
.|.+||..+++.+..+..... ....+.+ ++++..+++++.++.|.+||..
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~-~~~~~~~---s~dg~~l~~~~~~~~i~~~d~~-------------------------- 214 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQNTGK-MSTGLAL---DSEGKRLYTTNADGELITIDTA-------------------------- 214 (353)
T ss_dssp EEEEEETTTTEEEEEECCCCT-TCCCCEE---ETTTTEEEEECTTSEEEEEETT--------------------------
T ss_pred eEEEEcCCCCceEEEecCCCC-ccceEEE---CCCCCEEEEEcCCCeEEEEECC--------------------------
Confidence 999999999998887762211 1122333 4788899999999999999998
Q ss_pred EecccccceeeeEEEe----CCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 238 KLQDQQHTAVNLFRLV----GHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~----gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
+++.+..+. ++...+.+++|+|++++++.++. ++.|.+||..+++. +. ...... ..
T Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--------~~--~~~~~~--~~ 275 (353)
T 3vgz_A 215 -------DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI--------LA--KVAAPE--SL 275 (353)
T ss_dssp -------TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE--------EE--EEECSS--CC
T ss_pred -------CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--------EE--EEEcCC--Cc
Confidence 455555544 35667899999999997766654 59999999988543 22 122111 24
Q ss_pred EEEEC--CCEE-EEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 313 DCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 313 ~v~~~--~~~l-~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
.++|+ ++.+ ++...++.|.+||. +++.+..+.... .+.+++|+|++++|+.+..++
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 57776 5544 55557999999999 677777776544 589999999999877776654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=173.22 Aligned_cols=249 Identities=11% Similarity=0.025 Sum_probs=181.2
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc-CCCCCCCCCCccccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF-ELSPNSQYQPETCVN 121 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~-~~~~~~~~~~~~~~~ 121 (1088)
+++|++||+.+++..... .+.. .|.+++|+ |++ .++++.+++.|.+||+.. ..
T Consensus 21 ~~~i~~~d~~~~~~~~~~-~~~~-~v~~~~~s-------pdg----~~l~~~~~~~i~~~d~~~~~~------------- 74 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVW-QTPE-LFEAPNWS-------PDG----KYLLLNSEGLLYRLSLAGDPS------------- 74 (297)
T ss_dssp CEEEEEEETTTTEEEEEE-EESS-CCEEEEEC-------TTS----SEEEEEETTEEEEEESSSCCS-------------
T ss_pred ceeEEEEeCCCCceeeec-cCCc-ceEeeEEC-------CCC----CEEEEEcCCeEEEEeCCCCCC-------------
Confidence 589999999998876444 4444 69999999 888 677777799999999985 32
Q ss_pred cceeeeccCC-CCcEEEEEEecccCCCCEEEEEE--cCCcEEEEEc--CCCceEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 122 LSLVQSLPRL-SHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDI--SNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 122 ~~~~~~l~~h-~~~I~~v~f~p~~~d~~~lasgs--~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
......+| ...|.+++|+| ++++|++++ .++..+||.+ .+++ ...+..+.. ...+.+ ++++..|
T Consensus 75 --~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~---spdg~~l 143 (297)
T 2ojh_A 75 --PEKVDTGFATICNNDHGISP---DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLP--SYWHGW---SPDGKSF 143 (297)
T ss_dssp --CEECCCTTCCCBCSCCEECT---TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSS--EEEEEE---CTTSSEE
T ss_pred --ceEeccccccccccceEECC---CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCC--ccceEE---CCCCCEE
Confidence 22333444 47889999999 999999998 3455666655 4444 334433332 444554 6788877
Q ss_pred E-EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 197 A-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 197 ~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
+ ++..++.+.+|++.. .......+..|...+.+++|+|++++++.++
T Consensus 144 ~~~~~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDI--------------------------------DSGVETRLTHGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEEEEETTEEEEEEEET--------------------------------TTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCceEEEEEEC--------------------------------CCCcceEcccCCCccccceECCCCCEEEEEe
Confidence 6 788899999999861 1223455667888999999999999888766
Q ss_pred -CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC-----------CcEEEEcC-CCce-
Q 001391 276 -DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-----------CTCRVWGS-DGKQ- 339 (1088)
Q Consensus 276 -~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D-----------g~i~vWd~-~~~~- 339 (1088)
.++.+++|++.... ..+. .+..|...+.+++|+ +.+|++++.+ +.|++||+ +++.
T Consensus 192 ~~~~~~~i~~~~~~~-------~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDG-------SSVE--RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp CTTSSCEEEEEETTS-------SCEE--ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred cCCCCccEEEECCCC-------CCcE--EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 58999999986321 1222 566777889999998 5778877765 56999999 4443
Q ss_pred -eEEEcccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 340 -LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 340 -~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+..+..|.. .+..++|+|++++|++++.|.
T Consensus 263 ~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred eeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 334446776 699999999999998887664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-15 Score=171.41 Aligned_cols=275 Identities=12% Similarity=0.096 Sum_probs=178.6
Q ss_pred CEEEEE-e-CCeEEEEECC-CC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC-CEEEEEEeccCCC
Q 001391 36 PFLLAG-S-GSQVLLYDLE-AG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE-KRVKLFELNFELS 109 (1088)
Q Consensus 36 ~~laag-~-d~~I~vwd~~-tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd-~~v~iw~l~~~~~ 109 (1088)
++|+++ . ++.|++||+. ++ +.+..+. +...+.+++|+ |+++ .++++..+ +.|++|++....
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s-------pdg~---~l~~~~~~~~~v~~~~~~~~~- 71 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVS-------PDKR---YLYVGVRPEFRVLAYRIAPDD- 71 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEEC-------TTSS---EEEEEETTTTEEEEEEECTTT-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEEC-------CCCC---EEEEeecCCCeEEEEEecCCC-
Confidence 444444 4 7999999995 44 3333333 33468999999 7873 45555554 999999997321
Q ss_pred CCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcC---CCceEEEeccCCceeEEEEe
Q 001391 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDIS---NSSIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~---~~~~~~~~~~~~~~~~~s~~ 185 (1088)
+ ..+.+..+..+. .+.+++|+| ++++|++++. ++.|.+||+. ..+.+..+..+.. ...++
T Consensus 72 -~---------~~~~~~~~~~~~-~~~~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~ 135 (343)
T 1ri6_A 72 -G---------ALTFAAESALPG-SLTHISTDH---QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG--CHSAN 135 (343)
T ss_dssp -C---------CEEEEEEEECSS-CCSEEEECT---TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT--BCCCE
T ss_pred -C---------ceeeccccccCC-CCcEEEEcC---CCCEEEEEecCCCeEEEEECCCCccccccccccCCCC--ceEEE
Confidence 0 134445554444 789999999 9998877665 8899999994 3334444443322 23333
Q ss_pred eecCCCCCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE--EEeC-CCCCEEE
Q 001391 186 LWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF--RLVG-HEGSIFR 261 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-h~~~V~~ 261 (1088)
+ ++++..+++++ .++.|.+||+.+.. ...... .+.. ....+..
T Consensus 136 ~---s~dg~~l~~~~~~~~~v~~~d~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 182 (343)
T 1ri6_A 136 I---SPDNRTLWVPALKQDRICLFTVSDDG------------------------------HLVAQDPAEVTTVEGAGPRH 182 (343)
T ss_dssp E---CTTSSEEEEEEGGGTEEEEEEECTTS------------------------------CEEEEEEEEEECSTTCCEEE
T ss_pred E---CCCCCEEEEecCCCCEEEEEEecCCC------------------------------ceeeecccccccCCCCCcce
Confidence 3 67888777776 89999999997100 111111 2232 3457889
Q ss_pred EEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeecee-ee-cc--CcceEEEEEC--CCEEE-EEeCCCcEEEE
Q 001391 262 IEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSV-LY-GH--NARVWDCCLT--DSFII-TAGEDCTCRVW 333 (1088)
Q Consensus 262 v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~-~~-~h--~~~I~~v~~~--~~~l~-sg~~Dg~i~vW 333 (1088)
++|+|++++++.++ .++.|++|++..... ......... .. ++ ...+..++|+ +.+|+ ++..++.|++|
T Consensus 183 ~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 183 MVFHPNEQYAYCVNELNSSVDVWELKDPHG----NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 258 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEESSCTTS----CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCC----cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence 99999999776554 789999999964211 011121001 11 11 3356789998 45565 55589999999
Q ss_pred cCC--C---ceeEEEcccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEcC
Q 001391 334 GSD--G---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (1088)
Q Consensus 334 d~~--~---~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~ 378 (1088)
++. + +.+..+..+. .+..++|+|++++|++++ .|+.|.+|+++
T Consensus 259 d~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEcCCCCceEEeeeecCCC--ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 995 3 2333344333 378999999999888887 68999999763
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-15 Score=169.61 Aligned_cols=275 Identities=10% Similarity=0.027 Sum_probs=185.2
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNS 112 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~ 112 (1088)
+.+++++. ++.|++||..+++.+..+..+.. .+ +++|+ |+++ .++++.. ++.|.+||+....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~-~~~~s-------~dg~---~l~~~~~~~~~i~~~d~~~~~---- 73 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYD-FV-DTAIT-------SDCS---NVVVTSDFCQTLVQIETQLEP---- 73 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCC-EE-EEEEC-------SSSC---EEEEEESTTCEEEEEECSSSS----
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCC-cc-eEEEc-------CCCC---EEEEEeCCCCeEEEEECCCCc----
Confidence 34455555 69999999999999888886544 46 99999 7873 4555555 7899999998533
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC---cEEEEEcCCCceEEEeccCCceeEEEEeeecC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGD 189 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~ 189 (1088)
. ....+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+.. ...+++
T Consensus 74 ---------~-~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~~~--- 135 (331)
T 3u4y_A 74 ---------P-KVVAIQEGQSSMADVDITP---DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD--AVGIAI--- 135 (331)
T ss_dssp ---------C-EEEEEEECSSCCCCEEECT---TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT--EEEEEE---
T ss_pred ---------e-eEEecccCCCCccceEECC---CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC--ccceEE---
Confidence 1 1445555666666699999 999998555553 899999999988877765443 245555
Q ss_pred CCCCcEE-EEEecCCe-EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC
Q 001391 190 NLEALRI-ASGTIYNE-IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (1088)
Q Consensus 190 s~~~~~l-~sg~~dg~-I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~ 267 (1088)
+|++..+ +++..++. |.+|++....... ... ...+ .+...+..++|+|+
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~---------------------------~~~-~~~~-~~~~~~~~~~~spd 186 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLF---------------------------DTG-QEFI-SGGTRPFNITFTPD 186 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEE---------------------------EEE-EEEE-CSSSSEEEEEECTT
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEe---------------------------ecC-Cccc-cCCCCccceEECCC
Confidence 6788744 45556688 9999987110000 111 1222 34556899999999
Q ss_pred CCEEEE-EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE-eCCCcEEEEcC-CCce--e
Q 001391 268 GSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQ--L 340 (1088)
Q Consensus 268 g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg-~~Dg~i~vWd~-~~~~--~ 340 (1088)
|++++. +..++.|++||+.+++. .+.+. .+. +...+..++|+ +.+++.+ ..++.|.+||. +++. +
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~~~-----~~~~~--~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNPEN-----ITLLN--AVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSSTTS-----CEEEE--EEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcc-----cceee--ecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 996654 55689999999987542 12232 233 34567789998 5655544 45788999999 5554 3
Q ss_pred EEEccc----CC--CCeEEEEEcCCCCEEEEEe-CCCCEEEEEcCCC
Q 001391 341 KMIKEH----IG--RGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAF 380 (1088)
Q Consensus 341 ~~~~~h----~~--~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~~~ 380 (1088)
..+..+ .. .....++|+|++++|++++ .++.|.+||+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 333222 11 1234589999999886555 4679999999653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-16 Score=173.44 Aligned_cols=262 Identities=7% Similarity=-0.014 Sum_probs=187.5
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCc-ceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGI-RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~-~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~ 112 (1088)
.+|+++. ++.|++||..+++.+..+...... .+.+++|+ |+++ .++++.. ++.|.+||+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-------~dg~---~l~v~~~~~~~v~~~d~~~~~---- 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-------PGGR---IAYATVNKSESLVKIDLVTGE---- 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC-------TTSS---EEEEEETTTTEEEEEETTTCC----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc-------CCCC---EEEEEeCCCCeEEEEECCCCC----
Confidence 3677766 799999999999999888754321 37899999 7773 4545554 7899999987532
Q ss_pred CCCCccccccceeeecc-C----CCCcEEEEEEecccCCCCEEEEEE------------cCCcEEEEEcCCCceEEEecc
Q 001391 113 QYQPETCVNLSLVQSLP-R----LSHWVFDVCFLKVCNGNRSLAIGC------------SDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~-~----h~~~I~~v~f~p~~~d~~~lasgs------------~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
.+..+. + |...+.+++|+| ++++|+++. .++.|.+||+.+++.+..+..
T Consensus 68 -----------~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 68 -----------TLGRIDLSTPEERVKSLFGAALSP---DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp -----------EEEEEECCBTTEEEECTTCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred -----------eEeeEEcCCcccccccccceEECC---CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 232222 1 223678899999 999888886 579999999999888777654
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
+.. ...+.+ ++++..|+++ ++.|.+||+. +++.+..+..+
T Consensus 134 ~~~--~~~~~~---s~dg~~l~~~--~~~i~~~d~~---------------------------------~~~~~~~~~~~ 173 (337)
T 1pby_B 134 PRQ--ITMLAW---ARDGSKLYGL--GRDLHVMDPE---------------------------------AGTLVEDKPIQ 173 (337)
T ss_dssp CSS--CCCEEE---CTTSSCEEEE--SSSEEEEETT---------------------------------TTEEEEEECST
T ss_pred CCC--cceeEE---CCCCCEEEEe--CCeEEEEECC---------------------------------CCcEeeeeecc
Confidence 322 223333 6788877777 6899999998 44444444433
Q ss_pred CCCEEEEEEcCCCCEEEEEECC-C-----------------------cEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDD-R-----------------------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~D-g-----------------------~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
.. ...+.|+|+++.++..+.. + .|.+||+.+++. . . .....+...+
T Consensus 174 ~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------~--~-~~~~~~~~~~ 243 (337)
T 1pby_B 174 SW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM------A--M-REVRIMDVFY 243 (337)
T ss_dssp TT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE------E--E-EEEEECSSCE
T ss_pred cc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc------e--E-eecCCCCCce
Confidence 20 0123678888766544332 2 468999988643 1 1 2455677788
Q ss_pred EEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 312 WDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 312 ~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+++|+ +.+++++ ++.|++||+ +++.+..+..+. .+.+++|+|++++|++++.++.|.+||+.+
T Consensus 244 ~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH--SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS--CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred eeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC--ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 899998 5677777 799999999 667777766543 478999999999999999999999999954
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-16 Score=195.28 Aligned_cols=295 Identities=9% Similarity=0.033 Sum_probs=173.6
Q ss_pred CEEEEEeCCeEEEEECCCCeeE-EEEeeeCC----------------cceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLI-RPFQVFHG----------------IRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~-~~~~~~~~----------------~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
+++....++ | +||+.+|+.+ ..+..+.. ..|.+++|| ||+ .++++ .++.
T Consensus 37 ~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s-------pd~----~~~~~-~~~~ 102 (706)
T 2z3z_A 37 NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA-------GRG----LVVLF-TQGG 102 (706)
T ss_dssp EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEET-------TTT----EEEEE-ETTE
T ss_pred eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEEC-------CCC----eEEEE-ECCE
Confidence 444444456 8 9999999874 44443331 358999999 773 44444 5699
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-----CceEEEe
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILEV 173 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-----~~~~~~~ 173 (1088)
|++||+.... ...+..+...+.+++|+| ||+.|+++ .|+.|++||+.+ ++.....
T Consensus 103 i~~~d~~~~~----------------~~~l~~~~~~~~~~~~Sp---dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 103 LVGFDMLARK----------------VTYLFDTNEETASLDFSP---VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp EEEEETTTTE----------------EEEEECCTTCCTTCEECT---TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred EEEEECCCCc----------------eEEccCCcccccCCcCCC---CCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 9999987432 223445667789999999 99999985 689999999998 7665433
Q ss_pred ccCCcee-------------EEEEeeecCCCCCcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 174 HSPERCL-------------LYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 174 ~~~~~~~-------------~~s~~~~~~s~~~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
..+.... ..++.+ +||+..|++++.| ..+..+.+..................+....+..+.+
T Consensus 163 ~~~~~~~~~g~~~~~ee~~~~~~~~~---SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 163 IDGTETLVYGQAVHQREFGIEKGTFW---SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp SCCBTTEEESSCCGGGCTTCCCSEEE---CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred cCCCCCeEcccchhhhhcCCCceEEE---CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 3322211 123333 7899999988732 1111111100000000000000000111112223333
Q ss_pred cccccceeeeEEE--eCCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCcccCCCCceeeeceeeeccCc---
Q 001391 240 QDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--- 309 (1088)
Q Consensus 240 ~~~~~~~~~~~~~--~gh~~~V~~v~~sp~g~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~--- 309 (1088)
|+.. +++..... ..|...+..++|+|||++|++++.++ .|++||+.+++. ...+ ....+..
T Consensus 240 ~d~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-----~~~~---~~~~~~~~~~ 310 (706)
T 2z3z_A 240 YHLA-TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-----VRTL---FVETDKHYVE 310 (706)
T ss_dssp EETT-TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-----EEEE---EEEECSSCCC
T ss_pred EECC-CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-----eeEE---EEccCCCeEC
Confidence 3322 23322222 25778899999999999999988776 899999988621 1111 1112222
Q ss_pred ceEEEEECC----CEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEE-EEEcCCCCEEEEEeCC-C--CEEEEEc
Q 001391 310 RVWDCCLTD----SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR-CLYDSLSSLLVTAGFD-S--AIKVHQF 377 (1088)
Q Consensus 310 ~I~~v~~~~----~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~-l~~~~dg~~l~tg~~D-g--~I~iwd~ 377 (1088)
.+.+++|++ .++++++.|+.+++|.+ +++.+..+..+.. .+.. ++|+|+++.|+.++.+ + .+.+|.+
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW-EVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSS-CEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCe-EEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 235677853 57888889999999987 6777888877766 5776 7999999977666554 3 2455543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=193.88 Aligned_cols=287 Identities=9% Similarity=0.051 Sum_probs=190.6
Q ss_pred CCCCCceEEecCCCce-------ee---eeEEEEEeccCCCCCCCCEEEEEeC----------CeEEEEECCCCeeEEEE
Q 001391 1 MGKKDLSEWRLDVGQY-------LG---EISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPF 60 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~-------~~---~V~~v~fs~~pd~~~~~~~laag~d----------~~I~vwd~~tg~~~~~~ 60 (1088)
+.|++|++||+.+++. .. .|.+++|| || +++|+++.+ +.|++||+.+++. ..+
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S--pD----g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 106 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS--PD----REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSL 106 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC--TT----SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EEC
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEEC--CC----CCEEEEEecCccceeecceeeEEEEECCCCce-Eec
Confidence 3688999999999871 11 38999999 99 899998863 6899999999876 333
Q ss_pred eeeC--CcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC-------
Q 001391 61 QVFH--GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL------- 131 (1088)
Q Consensus 61 ~~~~--~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h------- 131 (1088)
.... ...+..++|| ||| ..|+...++.|.+|++.... .......+
T Consensus 107 ~~~~~~~~~~~~~~~S-------PdG----~~la~~~~~~i~~~~~~~g~---------------~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWG-------PKG----QQLIFIFENNIYYCAHVGKQ---------------AIRVVSTGKEGVIYN 160 (723)
T ss_dssp CCTTCCSCCCSBCCBC-------SST----TCEEEEETTEEEEESSSSSC---------------CEEEECCCBTTTEEE
T ss_pred cCCccccccccccEEC-------CCC----CEEEEEECCeEEEEECCCCc---------------eEEEecCCCCCceEC
Confidence 3221 2247889999 888 56777777999999987533 11111222
Q ss_pred --CC---------cEEEEEEecccCCCCEEEEEEcCC----------------------------------cEEEEEcCC
Q 001391 132 --SH---------WVFDVCFLKVCNGNRSLAIGCSDN----------------------------------SIRVWDISN 166 (1088)
Q Consensus 132 --~~---------~I~~v~f~p~~~d~~~lasgs~Dg----------------------------------~V~iWd~~~ 166 (1088)
.+ .+.+++|+| ||+.|++++.|+ .|++||+.+
T Consensus 161 g~~~~v~~ee~~~~~~~~~~Sp---Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWWSP---DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEECT---TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred cccceeEEEEeccCcceEEECC---CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 22 237899999 999999987653 799999998
Q ss_pred CceEEEeccCC-----ceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 167 SSIILEVHSPE-----RCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 167 ~~~~~~~~~~~-----~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
++....+..+. ...+.++.+ +||+.++++... +..|.+||+.
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~---SpDg~~l~~~~~~~~~~~~i~~~d~~-------------------------- 288 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKW---ATSTKVAVTWLNRAQNVSILTLCDAT-------------------------- 288 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEE---SSSSEEEEEEEETTSCEEEEEEEETT--------------------------
T ss_pred CceeEEeeCCccCCCccceeEEEEE---eCCCeEEEEEEcCCCCeEEEEEEeCC--------------------------
Confidence 87656665431 344556665 788988877643 3578999987
Q ss_pred EecccccceeeeEEEe-CCCCCEE----EEEEcCCCCEEEE--EECCC------cEEEEE-cCCCcccCCCCceeeecee
Q 001391 238 KLQDQQHTAVNLFRLV-GHEGSIF----RIEWSSCGSKLVS--VSDDR------SARIWE-VRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~-gh~~~V~----~v~~sp~g~~l~s--~s~Dg------~v~iWd-~~~~~~~~~~~~~~i~~~~ 303 (1088)
+++....+. .|.+.+. .++|+|||+.|+. +..++ .|.+|| ...+.. .... .
T Consensus 289 -------~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~------~~~~--~ 353 (723)
T 1xfd_A 289 -------TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN------DNIQ--S 353 (723)
T ss_dssp -------TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS------CCCC--B
T ss_pred -------CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc------ccee--E
Confidence 444333333 2444443 7899999997764 45677 466666 333220 0011 3
Q ss_pred eeccCcceEE-EEEC--CCEEEEEeCC---CcEEEEcC--CCc-eeEEEcc---cCCCCeEEEEEcCCCCEEEEEeC
Q 001391 304 LYGHNARVWD-CCLT--DSFIITAGED---CTCRVWGS--DGK-QLKMIKE---HIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 304 ~~~h~~~I~~-v~~~--~~~l~sg~~D---g~i~vWd~--~~~-~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
+..+...+.. ++|+ +..|+..+.+ +.+++|++ .+. ....+.. |.. .+..++|+|||++|+....
T Consensus 354 l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 354 ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENC-TYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSC-CCCEEEECTTSSEEEEECC
T ss_pred eecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCC-CeEEEEECCCCCEEEEEcc
Confidence 3333334444 6887 5677655544 78999998 332 3344443 444 5889999999998776543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=171.68 Aligned_cols=256 Identities=8% Similarity=0.014 Sum_probs=181.6
Q ss_pred CCCCceEEecCCCcee------e---eeEEEEEeccCCCCCCCCEEEE-Ee-CCeEEEEECCCCeeEEEEeeeC----Cc
Q 001391 2 GKKDLSEWRLDVGQYL------G---EISALCFVHLPSHLSSLPFLLA-GS-GSQVLLYDLEAGTLIRPFQVFH----GI 66 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~------~---~V~~v~fs~~pd~~~~~~~laa-g~-d~~I~vwd~~tg~~~~~~~~~~----~~ 66 (1088)
.|++|++||+.+++.. + .+.+++|+ |+ ++++++ +. ++.|.+||+.+++.+..+.... +.
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA--PG----GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC--TT----SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc--CC----CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 5789999999998722 2 47789999 99 766655 44 5899999999999988877533 12
Q ss_pred ceEEEEecccccccCCCccceeeEEEEE------------CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALF------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~------------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
.+.+++|+ |+|+ .++++. .++.|.+||+... +.+..+.. ...
T Consensus 83 ~~~~~~~s-------~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------------~~~~~~~~-~~~ 136 (337)
T 1pby_B 83 SLFGAALS-------PDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETL---------------SRRKAFEA-PRQ 136 (337)
T ss_dssp CTTCEEEC-------TTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTT---------------EEEEEEEC-CSS
T ss_pred cccceEEC-------CCCC---EEEEEecccccccccccccCceEEEEECCCC---------------cEEEEEeC-CCC
Confidence 57889999 7873 344443 4799999998742 33333333 345
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC--ceeEEEEeeecCCCCCcEEEEEecC-C--------
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIY-N-------- 203 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l~sg~~d-g-------- 203 (1088)
+.+++|+| ++++|+++ ++.|.+||+.+++....+..+. ... . .++++..++..+.. +
T Consensus 137 ~~~~~~s~---dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~----~---~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 137 ITMLAWAR---DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET----Y---AQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CCCEEECT---TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT----B---CCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred cceeEECC---CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc----e---eCCCccEEeeeccCCCceeeeeec
Confidence 78899999 99988887 6899999999998877765433 221 1 24566655443322 2
Q ss_pred ---------------eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee-eEEEeCCCCCEEEEEEcCC
Q 001391 204 ---------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSC 267 (1088)
Q Consensus 204 ---------------~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~gh~~~V~~v~~sp~ 267 (1088)
.|.+||+. +++. ...+..+...+.+++|+|+
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~---------------------------------~~~~~~~~~~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLE---------------------------------TGEMAMREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETT---------------------------------TCCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccccccccccccceEEEeCC---------------------------------CCCceEeecCCCCCceeeEEECCC
Confidence 35666665 2222 3344567778999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
+++++++ ++.|++||+.+++ .+. .+. ....+.+++|+ +.++++++.++.|++||+ +++.+..+.
T Consensus 252 g~~l~~~--~~~v~~~d~~~~~--------~~~--~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 252 KTRAFGA--YNVLESFDLEKNA--------SIK--RVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTTE--------EEE--EEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEe--CCeEEEEECCCCc--------Ccc--eec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9999888 6899999998753 222 222 23457889998 578888899999999999 777777775
Q ss_pred ccC
Q 001391 345 EHI 347 (1088)
Q Consensus 345 ~h~ 347 (1088)
.+.
T Consensus 319 ~~~ 321 (337)
T 1pby_B 319 LPG 321 (337)
T ss_dssp CGG
T ss_pred cCC
Confidence 543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-15 Score=166.17 Aligned_cols=265 Identities=10% Similarity=0.060 Sum_probs=175.3
Q ss_pred CCCCceEEecCCCce-------eeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCee-EEEEeeeCCcceEEE
Q 001391 2 GKKDLSEWRLDVGQY-------LGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTL-IRPFQVFHGIRLHGI 71 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~-------~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~-~~~~~~~~~~~V~~i 71 (1088)
.++.|++||+.+++. ..++ +++|+ |+ +++|+++. ++.|.+||..+++. ...+..+.. ...++
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s--~d----g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~ 89 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGYDFV-DTAIT--SD----CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS-SMADV 89 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCCCEE-EEEEC--SS----SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS-CCCCE
T ss_pred CCCeEEEEeCcccceeeeEEccCCcc-eEEEc--CC----CCEEEEEeCCCCeEEEEECCCCceeEEecccCCC-Cccce
Confidence 478899999999882 2345 99999 99 77666654 58999999999987 666665443 44559
Q ss_pred EecccccccCCCccceeeEEEEECCC----EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
+|+ |++ ..+++..+. .|.+||+... +.+..+.. .....+++|+| ++
T Consensus 90 ~~s-------~dg----~~l~~~~~~~~~~~i~v~d~~~~---------------~~~~~~~~-~~~~~~~~~sp---dg 139 (331)
T 3u4y_A 90 DIT-------PDD----QFAVTVTGLNHPFNMQSYSFLKN---------------KFISTIPI-PYDAVGIAISP---NG 139 (331)
T ss_dssp EEC-------TTS----SEEEECCCSSSSCEEEEEETTTT---------------EEEEEEEC-CTTEEEEEECT---TS
T ss_pred EEC-------CCC----CEEEEecCCCCcccEEEEECCCC---------------CeEEEEEC-CCCccceEECC---CC
Confidence 999 887 444454433 9999998753 33444443 34568999999 99
Q ss_pred CEEEE-EEcCCc-EEEEEcCCCceEEEec---cCCceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEeccCccccCCCC
Q 001391 148 RSLAI-GCSDNS-IRVWDISNSSIILEVH---SPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNS 221 (1088)
Q Consensus 148 ~~las-gs~Dg~-V~iWd~~~~~~~~~~~---~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~~~~~~~~~~~ 221 (1088)
++|++ ...++. |.+|++.....+.... .........+.+ ++++..+ +++..++.|.+||+.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~~~~v~v~d~~---------- 206 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF---TPDGNFAFVANLIGNSIGILETQ---------- 206 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEE---CTTSSEEEEEETTTTEEEEEECS----------
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEE---CCCCCEEEEEeCCCCeEEEEECC----------
Confidence 85554 455688 9999997644332110 111222445555 6888755 455578999999998
Q ss_pred CCCccCCCCCCCCceeEecccccceee---eEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCce
Q 001391 222 PEGNHAHGSSSDFKCFKLQDQQHTAVN---LFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 222 ~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~ 297 (1088)
+++. +..+.. ...+..++|+|+|++++.++ .++.|.+||+.+++. .
T Consensus 207 -----------------------~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~------~ 256 (331)
T 3u4y_A 207 -----------------------NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL------S 256 (331)
T ss_dssp -----------------------STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE------E
T ss_pred -----------------------CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce------e
Confidence 3333 555553 36678999999999776554 578899999988643 1
Q ss_pred eeece--eeeccCcc---eEEEEEC--CCEEEE-EeCCCcEEEEcCCCceeEEEcccC
Q 001391 298 EVGSS--VLYGHNAR---VWDCCLT--DSFIIT-AGEDCTCRVWGSDGKQLKMIKEHI 347 (1088)
Q Consensus 298 ~i~~~--~~~~h~~~---I~~v~~~--~~~l~s-g~~Dg~i~vWd~~~~~~~~~~~h~ 347 (1088)
.+... .+..+... ...++|+ +.+|+. +..++.|.+||+.++.+..+....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~ 314 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIE 314 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCC
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceeccc
Confidence 22210 10011222 2457888 566654 455679999999777666655443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-14 Score=159.41 Aligned_cols=262 Identities=10% Similarity=0.088 Sum_probs=171.4
Q ss_pred CCCceEEecC--CCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCCCe--eEEEEeeeCCcc
Q 001391 3 KKDLSEWRLD--VGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGT--LIRPFQVFHGIR 67 (1088)
Q Consensus 3 d~~i~iWdl~--~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~tg~--~~~~~~~~~~~~ 67 (1088)
++.|.+|++. +++ +...+.+++|+ || +++++++. ++.|++||+.+++ .+..+..+. ..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s--pd----g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~ 87 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS--AK----DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-TP 87 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC--TT----CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-CC
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc--cC----CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCC-CC
Confidence 4557777654 454 22446789999 99 77555554 3899999998776 444444433 36
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeecc---------CCCCcEEE
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP---------RLSHWVFD 137 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~---------~h~~~I~~ 137 (1088)
+..++|+ |||+ .++++. .++.|++|++.... ..+.+..+. .+...+.+
T Consensus 88 p~~~a~s-------pdg~---~l~~~~~~~~~v~v~~~~~~g------------~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 88 PAYVAVD-------EARQ---LVYSANYHKGTAEVMKIAADG------------ALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp CSEEEEE-------TTTT---EEEEEETTTTEEEEEEECTTS------------CEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred CEEEEEC-------CCCC---EEEEEeCCCCEEEEEEeCCCC------------CeeecceeecCCCCCCccccCCCceE
Confidence 8999999 8873 455555 47999999997422 022222221 12346899
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcC-CCceEE--EeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEeccC
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWE 213 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~-~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~~ 213 (1088)
++|+| +++++++...++.|++|++. +++... .+..+.......+++ +|++.++++ +..++.|.+|++...
T Consensus 146 ~~~sp---dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~---spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 146 TDLTP---DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF---SPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp EEECT---TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEECC---CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE---CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 99999 99966666678899999998 554332 222233323344555 688885554 567899999998710
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC------CCEEEEEEcCCCCEE-EEEECCCcEEEEEcC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE------GSIFRIEWSSCGSKL-VSVSDDRSARIWEVR 286 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~------~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~ 286 (1088)
. .....+..+.... ..+..++|+|+|++| ++...++.|.+|++.
T Consensus 220 ~-----------------------------g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 220 T-----------------------------GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp T-----------------------------TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred C-----------------------------CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 0 0112222333222 458899999999987 566778999999997
Q ss_pred CCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC-CcEEEEcC
Q 001391 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (1088)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D-g~i~vWd~ 335 (1088)
.... .+.+. .+..+...+..++|+ +.+|++++.+ +.+.+|++
T Consensus 271 ~~g~-----~~~~~--~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 271 ADGH-----LTLIQ--QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp GGGC-----EEEEE--EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCc-----EEEeE--EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 4311 23333 455566678899998 5677777754 89999954
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-15 Score=181.98 Aligned_cols=266 Identities=12% Similarity=0.012 Sum_probs=187.8
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
..+|.+++|+ || |++||.++ +++++||++.+++.. .+..++...+..++|+ || + .++++.
T Consensus 21 ~~~~~~~~~~--~D----G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~s-------pd-~---~l~~~~ 82 (582)
T 3o4h_A 21 AVEKYSLQGV--VD----GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYG-------VG-R---VILVRD 82 (582)
T ss_dssp HSCEEEEEEE--ET----TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTT-------CS-E---EEEEEE
T ss_pred ccchheeecC--CC----CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCC-------CC-e---EEEEec
Confidence 4579999999 99 88998865 799999999776654 4444443468999999 77 2 444443
Q ss_pred C---CCEEEEEEecc--CCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC--EEEEEEcCCcEEEEEcCCC
Q 001391 95 G---EKRVKLFELNF--ELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR--SLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 95 g---d~~v~iw~l~~--~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~--~lasgs~Dg~V~iWd~~~~ 167 (1088)
. +...+||.+.. .. ... .+..+. .+...+|+| +++ .+++++ ++.+.+||+.++
T Consensus 83 ~~~g~~~~~l~~~~~~~~g------------~~~---~l~~~~-~~~~~~~s~---dg~~~~~~s~~-~~~~~l~d~~~g 142 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPG------------EEQ---RLEAVK-PMRILSGVD---TGEAVVFTGAT-EDRVALYALDGG 142 (582)
T ss_dssp CSTTSCCEEEEEEETTSTT------------CCE---ECTTSC-SBEEEEEEE---CSSCEEEEEEC-SSCEEEEEEETT
T ss_pred cCCCCcceEEEEEeccCCC------------ccc---cccCCC-CceeeeeCC---CCCeEEEEecC-CCCceEEEccCC
Confidence 2 46678887765 22 011 121111 233568888 765 444444 445559999988
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC----CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d----g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
+.......+. +++.+ +|||..|++++.+ +.|++||+.
T Consensus 143 ~~~~l~~~~~----~~~~~---spDG~~la~~~~~~~~~~~i~~~d~~-------------------------------- 183 (582)
T 3o4h_A 143 GLRELARLPG----FGFVS---DIRGDLIAGLGFFGGGRVSLFTSNLS-------------------------------- 183 (582)
T ss_dssp EEEEEEEESS----CEEEE---EEETTEEEEEEEEETTEEEEEEEETT--------------------------------
T ss_pred cEEEeecCCC----ceEEE---CCCCCEEEEEEEcCCCCeEEEEEcCC--------------------------------
Confidence 7655444443 34443 5899999988777 789999987
Q ss_pred cceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE------
Q 001391 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC------ 315 (1088)
Q Consensus 244 ~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~------ 315 (1088)
+++ ...+.+|.+.+..++|+|||++|+++..++ .|++||+.+++. . .+.+|...+..++
T Consensus 184 -~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~------~-----~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 184 -SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV------E-----DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp -TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE------E-----ECCCSCSHHHHHCCSEEEE
T ss_pred -CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE------E-----EccCCCcChhhhhhccccc
Confidence 333 346788999999999999999999888888 899999988643 1 3345555555555
Q ss_pred --EC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC---EEEEEcC
Q 001391 316 --LT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA---IKVHQFQ 378 (1088)
Q Consensus 316 --~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~---I~iwd~~ 378 (1088)
|+ +.++++++.|+++++|++ |+... .+.+ .|.+++|+ +++++++++.+.+ +.+|+..
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~-g~~~~---~~~~-~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID-GERVE---APQG-NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET-TEEEC---CCSS-EEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE-CCeec---cCCC-ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 88 568899999999999999 76554 3334 68999999 9999888887754 4555543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-14 Score=161.03 Aligned_cols=268 Identities=9% Similarity=-0.009 Sum_probs=176.2
Q ss_pred CeEEEEEC--CCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCcc
Q 001391 44 SQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPET 118 (1088)
Q Consensus 44 ~~I~vwd~--~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~ 118 (1088)
+.|.+|++ .+++....-...+...+..++|+ ||| .++++.. ++.|.+|++....
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s-------pdg----~l~~~~~~~~~~~v~~~~~~~g~---------- 74 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS-------AKD----CLYSVDKEDDEGGIAAWQIDGQT---------- 74 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC-------TTC----EEEEEEEETTEEEEEEEEEETTE----------
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc-------cCC----eEEEEEecCCCceEEEEEecCCc----------
Confidence 56666665 46665432222223357889999 887 4444443 5899999996432
Q ss_pred ccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCC-Cc--eEEEeccC--------CceeEEEEee
Q 001391 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISN-SS--IILEVHSP--------ERCLLYSMKL 186 (1088)
Q Consensus 119 ~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~-~~--~~~~~~~~--------~~~~~~s~~~ 186 (1088)
.+.+..+..+...+..++|+| ++++|++++ .++.|++|++.. +. .+..+... .......+++
T Consensus 75 ---~~~~~~~~~~~~~p~~~a~sp---dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 148 (347)
T 3hfq_A 75 ---AHKLNTVVAPGTPPAYVAVDE---ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL 148 (347)
T ss_dssp ---EEEEEEEEEESCCCSEEEEET---TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE
T ss_pred ---EEEeeeeecCCCCCEEEEECC---CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE
Confidence 445666566778899999999 999888887 689999999963 32 23333211 1122445555
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC-CCCEEEEEEc
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWS 265 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~v~~s 265 (1088)
+|++.+++++..++.|.+|++.... .......+..+ ...+..++|+
T Consensus 149 ---spdg~l~v~~~~~~~v~~~~~~~~g------------------------------~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 149 ---TPDNRLAVIDLGSDKVYVYNVSDAG------------------------------QLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp ---CTTSCEEEEETTTTEEEEEEECTTS------------------------------CEEEEEEEECCTTCCEEEEEEC
T ss_pred ---CCCCcEEEEeCCCCEEEEEEECCCC------------------------------cEEEeeeEEcCCCCCCceEEEC
Confidence 6788877777778999999987100 11122222333 2367889999
Q ss_pred CCCCEEEE-EECCCcEEEEEcCCCcccCCCCceeeeceeeeccC------cceEEEEEC--CCEE-EEEeCCCcEEEEcC
Q 001391 266 SCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN------ARVWDCCLT--DSFI-ITAGEDCTCRVWGS 335 (1088)
Q Consensus 266 p~g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~------~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~ 335 (1088)
|+|+++++ ...++.|++|++..... ....+. ...... ..+..++|+ +.+| ++...++.|.+|++
T Consensus 196 pdg~~l~v~~~~~~~v~v~~~~~~~g----~~~~~~--~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 196 PDGQYAFLAGELSSQIASLKYDTQTG----AFTQLG--IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTT----EEEEEE--EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCC----ceEEee--eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 99996655 56788999999875211 012221 222211 458889998 5555 56667899999998
Q ss_pred C--C--ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEEcC
Q 001391 336 D--G--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD-SAIKVHQFQ 378 (1088)
Q Consensus 336 ~--~--~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D-g~I~iwd~~ 378 (1088)
+ + +.+..+..+.. .+..++|+|||++|++++.+ +.|.+|+++
T Consensus 270 ~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 270 TADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 4 3 34445555544 58899999999988888765 899999764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-14 Score=159.79 Aligned_cols=243 Identities=9% Similarity=0.042 Sum_probs=176.1
Q ss_pred CCCceEEecCCCcee------eeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCc--------
Q 001391 3 KKDLSEWRLDVGQYL------GEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGI-------- 66 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~------~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~-------- 66 (1088)
++.|.+||+.+++.. ..+.+++|+ |+ +++++++. ++.|.+||..+++.+..+..+...
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 141 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATIN--NT----TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL 141 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEE--TT----TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEEC--CC----CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence 678999999998732 346789999 98 77665544 499999999999999888865432
Q ss_pred ceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
.+.+++|+ |+++ .++++. + ++.|.+||+.. .+.+..+..+...+.+++|+|
T Consensus 142 ~~~~~~~s-------~dg~---~l~~~~~~~~~~i~~~d~~~---------------~~~~~~~~~~~~~~~~~~~s~-- 194 (353)
T 3vgz_A 142 QPRELVAD-------DATN---TVYISGIGKESVIWVVDGGN---------------IKLKTAIQNTGKMSTGLALDS-- 194 (353)
T ss_dssp EEEEEEEE-------TTTT---EEEEEEESSSCEEEEEETTT---------------TEEEEEECCCCTTCCCCEEET--
T ss_pred CCceEEEC-------CCCC---EEEEEecCCCceEEEEcCCC---------------CceEEEecCCCCccceEEECC--
Confidence 27889999 7773 444444 3 78899999874 345555655666788999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccC---CceeEEEEeeecCCCCCcEEEEEe-cCCeEEEEEeccCccccCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~---~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~ 220 (1088)
++++|++++.++.|.+||+.+++.+..+..+ .......+++ ++++..++.++ .++.|.+||..
T Consensus 195 -dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---s~dg~~l~~~~~~~~~v~~~d~~--------- 261 (353)
T 3vgz_A 195 -EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL---DTARQRAFITDSKAAEVLVVDTR--------- 261 (353)
T ss_dssp -TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE---ETTTTEEEEEESSSSEEEEEETT---------
T ss_pred -CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE---CCCCCEEEEEeCCCCEEEEEECC---------
Confidence 9999999999999999999999888776542 2223445555 56777666655 45999999998
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceee
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
+++.+..+..+.. ..++|+|++++++.++ .++.|.+||..+++. +
T Consensus 262 ------------------------~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------~ 307 (353)
T 3vgz_A 262 ------------------------NGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV--------V 307 (353)
T ss_dssp ------------------------TCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEE--------E
T ss_pred ------------------------CCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeE--------E
Confidence 4555555554332 5799999999665555 789999999988532 3
Q ss_pred eceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 300 GSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
. .+ .....+.+++|+ +++++.+..++
T Consensus 308 ~--~~-~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 K--TF-DTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp E--EE-ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred E--EE-ecCCCCCeEEEcCCCCEEEEEEccc
Confidence 2 22 223467889998 56566655553
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-15 Score=185.07 Aligned_cols=305 Identities=8% Similarity=-0.002 Sum_probs=189.2
Q ss_pred EEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCC--cceEEEEecccccccCCCccceeeEEEEE-C--
Q 001391 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFINCTEGSVSTRVTFEVALF-G-- 95 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~--~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-- 95 (1088)
..++|+ || +++++++.+++|++||+.+++....+..+.. ..|..++|| ||| ..|+.. .
T Consensus 19 ~~~~~s--~d----g~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S-------pDg----~~la~~~~~~ 81 (719)
T 1z68_A 19 FFPNWI--SG----QEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS-------PDR----QFVYLESDYS 81 (719)
T ss_dssp CCCEES--SS----SEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC-------TTS----SEEEEEEEEE
T ss_pred CccEEC--CC----CeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEEC-------CCC----CeEEEEecCc
Confidence 378999 99 7777777789999999999988766654322 138999999 888 445443 3
Q ss_pred -------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 96 -------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 96 -------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
++.|++||+.... ......+ ...+.+++|+| ||+.||.+. |+.|++|++.+++
T Consensus 82 ~~~~~s~~~~i~~~d~~~g~-------------~~~~~~l---~~~~~~~~~SP---DG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 82 KLWRYSYTATYYIYDLSNGE-------------FVRGNEL---PRPIQYLCWSP---VGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp ECSSSCEEEEEEEEETTTTE-------------ECCSSCC---CSSBCCEEECS---STTCEEEEE-TTEEEEESSTTSC
T ss_pred eeEEeecceEEEEEECCCCc-------------cccceec---CcccccceECC---CCCEEEEEE-CCeEEEEeCCCCC
Confidence 4899999998543 1000112 25688999999 999999885 8899999998887
Q ss_pred eEEEeccCCceeE-----------------EEEeeecCCCCCcEEEEEecC-CeEEEEEeccCccccCCC-CCCCccCCC
Q 001391 169 IILEVHSPERCLL-----------------YSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLN-SPEGNHAHG 229 (1088)
Q Consensus 169 ~~~~~~~~~~~~~-----------------~s~~~~~~s~~~~~l~sg~~d-g~I~vwd~~~~~~~~~~~-~~~~~s~~~ 229 (1088)
.......+....+ .++.+ +|||..|+.++.| +.+.+|.+.......... ........|
T Consensus 142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w---SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW---SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE---CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred cEEEecCCCcCCeEcccccceeeeecccCcccEEE---CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 6543322211111 13444 7999999988765 444444332110000000 000111112
Q ss_pred CCCCCceeEecccccceeee--------EEEeCCCCCEEEEEEcCCCCEEEEEECC----CcEEEEE----cCCCcccCC
Q 001391 230 SSSDFKCFKLQDQQHTAVNL--------FRLVGHEGSIFRIEWSSCGSKLVSVSDD----RSARIWE----VRAEYWKDS 293 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~--------~~~~gh~~~V~~v~~sp~g~~l~s~s~D----g~v~iWd----~~~~~~~~~ 293 (1088)
.......+.+|+.. ++... ..+.+|...+..++|+||++.+++.... ..|++|| ..+++.
T Consensus 219 ~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~--- 294 (719)
T 1z68_A 219 AKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC--- 294 (719)
T ss_dssp SCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---
T ss_pred CCCCeeEEEEEECC-CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---
Confidence 22233355555543 22221 1134688899999999998777764432 2488889 666432
Q ss_pred CCceeeeceee----eccCcceE-----EEEEC--CCEEE--EEeCCC--cEEEEcCCCceeEEEcccCCCCeEEEEEcC
Q 001391 294 DSIEEVGSSVL----YGHNARVW-----DCCLT--DSFII--TAGEDC--TCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 294 ~~~~~i~~~~~----~~h~~~I~-----~v~~~--~~~l~--sg~~Dg--~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
.. .. .+|...+. .+.|+ +..++ +...+| .|.+|++.+.....+..+.. .+..+.+.
T Consensus 295 -----~~--~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~-~v~~~~~~- 365 (719)
T 1z68_A 295 -----PK--TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKW-EAINIFRV- 365 (719)
T ss_dssp -----CG--GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSS-CEEEEEEE-
T ss_pred -----EE--EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCce-EEEEEEEE-
Confidence 11 22 46666666 78888 44333 454565 56777775544666666555 48888777
Q ss_pred CCCEEEEEeCC-----CCEEEEEcC
Q 001391 359 LSSLLVTAGFD-----SAIKVHQFQ 378 (1088)
Q Consensus 359 dg~~l~tg~~D-----g~I~iwd~~ 378 (1088)
+++.|+..+.+ +.+++|.+.
T Consensus 366 d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 366 TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred eCCEEEEEEecCCCCCceEEEEEEe
Confidence 77777666654 889999874
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-14 Score=162.22 Aligned_cols=208 Identities=13% Similarity=0.111 Sum_probs=149.6
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc----------eEEEec----cCCceeEEEEeeecCCCCCcEEE-
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----------IILEVH----SPERCLLYSMKLWGDNLEALRIA- 197 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~----------~~~~~~----~~~~~~~~s~~~~~~s~~~~~l~- 197 (1088)
..+..+++++ ++.++++++.|+ +++|+..... .+.... .+....+.++++ ++++.+|+
T Consensus 37 ~~~n~lavs~---~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---spdg~~lav 109 (434)
T 2oit_A 37 ERSSLLAVSN---KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL---SCDNLTLSA 109 (434)
T ss_dssp SCCBCEEEET---TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE---CTTSCEEEE
T ss_pred CCccEEEEec---CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE---cCCCCEEEE
Confidence 4578899999 999999999888 9998864210 111110 111233666766 67889998
Q ss_pred ---EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-CCEEEE
Q 001391 198 ---SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVS 273 (1088)
Q Consensus 198 ---sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-g~~l~s 273 (1088)
+|+.|+.|++||+.+....... .......+..+.+|...|.+++|+|+ +.+|++
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~----------------------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQ----------------------QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCS----------------------SCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcC----------------------CcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence 7889999999999721000000 00011124456789999999999998 789999
Q ss_pred EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCC---
Q 001391 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG--- 348 (1088)
Q Consensus 274 ~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~--- 348 (1088)
++.|++|++||++++. .+ ....+|...|.+++|+ +.+|++|+.||+|++||..++....+..|..
T Consensus 168 ~s~Dg~v~iwD~~~~~--------~~--~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~ 237 (434)
T 2oit_A 168 CLADGSIAVLQVTETV--------KV--CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES 237 (434)
T ss_dssp EETTSCEEEEEESSSE--------EE--EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCT
T ss_pred EECCCeEEEEEcCCCc--------ce--eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCC
Confidence 9999999999998852 22 2556789999999998 6899999999999999998766666654422
Q ss_pred ---CCeEEEEEcCCCCEEEE-EeCCCC------EEEEEcCC
Q 001391 349 ---RGIWRCLYDSLSSLLVT-AGFDSA------IKVHQFQA 379 (1088)
Q Consensus 349 ---~~V~~l~~~~dg~~l~t-g~~Dg~------I~iwd~~~ 379 (1088)
..|.+++|++++.++++ ...||. +++|++..
T Consensus 238 ~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 238 DHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred CCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 15899999998877654 334433 89999854
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-14 Score=158.97 Aligned_cols=294 Identities=7% Similarity=-0.007 Sum_probs=172.9
Q ss_pred EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEE
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRV 99 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v 99 (1088)
+++++ ++ +++++++. +++|++||..+++.+..+.......+..++|+ |+++ .++++. +++.|
T Consensus 4 g~~~~--~~----~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s-------~dg~---~~~v~~~~~~~i 67 (349)
T 1jmx_B 4 GPALK--AG----HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-------PDNR---TAYVLNNHYGDI 67 (349)
T ss_dssp CCCCC--TT----CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC-------TTSS---EEEEEETTTTEE
T ss_pred ccccc--CC----CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC-------CCCC---EEEEEeCCCCcE
Confidence 44566 65 67777776 69999999999999988886542247899999 7773 444454 47999
Q ss_pred EEEEeccCCCCCCCCCCccccccceeeeccC-C-----CCcEEEEEEecccCCCCEEEEEEcC------------CcEEE
Q 001391 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPR-L-----SHWVFDVCFLKVCNGNRSLAIGCSD------------NSIRV 161 (1088)
Q Consensus 100 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-h-----~~~I~~v~f~p~~~d~~~lasgs~D------------g~V~i 161 (1088)
.+||+... +....+.. + ...+.+++|+| ++++|++++.+ +.|.+
T Consensus 68 ~~~d~~t~---------------~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~i~~ 129 (349)
T 1jmx_B 68 YGIDLDTC---------------KNTFHANLSSVPGEVGRSMYSFAISP---DGKEVYATVNPTQRLNDHYVVKPPRLEV 129 (349)
T ss_dssp EEEETTTT---------------EEEEEEESCCSTTEEEECSSCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred EEEeCCCC---------------cEEEEEEcccccccccccccceEECC---CCCEEEEEcccccccccccccCCCeEEE
Confidence 99998753 23333322 2 23478999999 99999998865 89999
Q ss_pred EEcCCCce---EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 162 WDISNSSI---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 162 Wd~~~~~~---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
||+.+++. +.....+.. +.++++ ++++. +++++ +.|.+||..+.+............ ........+.
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~--~~~~~~---s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 199 (349)
T 1jmx_B 130 FSTADGLEAKPVRTFPMPRQ--VYLMRA---ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNR--KGYSAPDVLY 199 (349)
T ss_dssp EEGGGGGGBCCSEEEECCSS--CCCEEE---CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCC--TTBCCCBCCC
T ss_pred EECCCccccceeeeccCCCc--ccceeE---CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCC--ccccCcccee
Confidence 99988543 333333322 333444 57887 55543 449999987433221100000000 0000000011
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~ 317 (1088)
+|....... . ......+++++++....... ....+..++..+++. ..+ ....+...+..++++
T Consensus 200 ~~~~~~~~~-~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~s 263 (349)
T 1jmx_B 200 FWPHQSPRH-E------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT------HTQ---EFADLTELYFTGLRS 263 (349)
T ss_dssp CCCCCCTTC-E------EEEEEEEEEC-------CCCEEEEEEEEEETTTCCE------EEE---EEEECSSCEEEEEEC
T ss_pred eecCCCcce-e------EEeeeeeeecCCCcCCccccccceeEEEEeccCCcE------Eec---ccccCCCcceeeEec
Confidence 111100000 0 00244567776553211111 111222355555322 111 233355567788886
Q ss_pred C---CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 318 D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 318 ~---~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ .+++++ ++.|.+||+ +++.+..+.... .+.+++|+|++++|++++.++.|++||+.+
T Consensus 264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp SSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred CCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC--CccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 3 567766 889999999 677767765443 478999999999888888999999999954
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=180.55 Aligned_cols=301 Identities=11% Similarity=0.055 Sum_probs=191.5
Q ss_pred CCCCceEEecCCCcee-------e---eeEEEEEeccCCCCCCCCEEEEEeC----------CeEEEEECCCCeeEEEEe
Q 001391 2 GKKDLSEWRLDVGQYL-------G---EISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPFQ 61 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~-------~---~V~~v~fs~~pd~~~~~~~laag~d----------~~I~vwd~~tg~~~~~~~ 61 (1088)
.|++|++||+.+++.. . .|.+++|| || +++|+.+++ +.|++||+.+++.+...+
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S--pD----g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS--PD----RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEEC--CC----CCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence 5889999999998721 1 28899999 99 899988763 899999999998732112
Q ss_pred eeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE------
Q 001391 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV------ 135 (1088)
Q Consensus 62 ~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I------ 135 (1088)
. . ..+..++|| ||| ..|+...++.|++|++...... .... .......+.||.++|
T Consensus 108 l-~-~~~~~~~~S-------PDG----~~la~~~~~~i~~~~~~~g~~~--~l~~----~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 108 L-P-RPIQYLCWS-------PVG----SKLAYVYQNNIYLKQRPGDPPF--QITF----NGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp C-C-SSBCCEEEC-------SST----TCEEEEETTEEEEESSTTSCCE--ECCC----CCBTTTEEESSCCHHHHHHTT
T ss_pred c-C-cccccceEC-------CCC----CEEEEEECCeEEEEeCCCCCcE--EEec----CCCcCCeEcccccceeeeecc
Confidence 1 1 258899999 888 5677777899999998754300 0000 000001123454444
Q ss_pred ---EEEEEecccCCCCEEEEEEcCC----------------------------------cEEEEEcCCCceE--EEecc-
Q 001391 136 ---FDVCFLKVCNGNRSLAIGCSDN----------------------------------SIRVWDISNSSII--LEVHS- 175 (1088)
Q Consensus 136 ---~~v~f~p~~~d~~~lasgs~Dg----------------------------------~V~iWd~~~~~~~--~~~~~- 175 (1088)
.+++|+| ||+.||+++.|. .|++||+.+++.. ..+..
T Consensus 169 ~~~~~~~wSP---DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 169 ATKYALWWSP---NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp CSSCCEEECT---TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred cCcccEEECC---CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 5899999 999999988653 7889999887642 22221
Q ss_pred ----CCceeEEEEeeecCCCCCcEEEEEecC----CeEEEEE----eccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 176 ----PERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWK----VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 176 ----~~~~~~~s~~~~~~s~~~~~l~sg~~d----g~I~vwd----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
.....+.++++ +||+.++++.... ..|.+|| ..
T Consensus 246 ~~~~~~~~~~~~~~~---SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------------------------- 290 (719)
T 1z68_A 246 AMIASSDYYFSWLTW---VTDERVCLQWLKRVQNVSVLSICDFREDWQ-------------------------------- 290 (719)
T ss_dssp HHHHTSCEEEEEEEE---SSSSEEEEEEEESSTTEEEEEEEEECSSSS--------------------------------
T ss_pred ccCCCCcceEEEeEE---eCCCeEEEEEeccccCeEEEEEEcccCCCC--------------------------------
Confidence 22334566665 6787777764433 2478888 55
Q ss_pred cceeeeEEE----eCCCCCEE-----EEEEcCCCCEEEE--EECCC--cEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 244 HTAVNLFRL----VGHEGSIF-----RIEWSSCGSKLVS--VSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 244 ~~~~~~~~~----~gh~~~V~-----~v~~sp~g~~l~s--~s~Dg--~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
+++....+ .+|.+.+. .+.|+|||+.++. ...++ .|.+||+.+++. ..+..+...
T Consensus 291 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----------~~lt~~~~~ 358 (719)
T 1z68_A 291 -TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----------IQITSGKWE 358 (719)
T ss_dssp -SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----------EECSCSSSC
T ss_pred -CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----------EecccCceE
Confidence 22222222 46777776 8899999996544 44555 456666655422 134444555
Q ss_pred eEEEEE-CCCEEEEEeC-----CCcEEEEcCC---Cc-eeEEEcc----cCCCCeEEEEEcCCCCEEEE-EeCC--CCEE
Q 001391 311 VWDCCL-TDSFIITAGE-----DCTCRVWGSD---GK-QLKMIKE----HIGRGIWRCLYDSLSSLLVT-AGFD--SAIK 373 (1088)
Q Consensus 311 I~~v~~-~~~~l~sg~~-----Dg~i~vWd~~---~~-~~~~~~~----h~~~~V~~l~~~~dg~~l~t-g~~D--g~I~ 373 (1088)
+..+.+ .+..|+..+. ++..++|.++ +. ....+.. |.. .+..+.|+|++++++. ++.+ ..+.
T Consensus 359 v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~~ 437 (719)
T 1z68_A 359 AINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC-QYYTASFSDYAKYYALVCYGPGIPIST 437 (719)
T ss_dssp EEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB-CBEEEEECGGGSSEEEEECCBSSCEEE
T ss_pred EEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC-ceEEEEECCCCCEEEEEcCCCCCCeEE
Confidence 655444 3555555554 4888999872 32 2344432 444 5889999999886664 4433 4677
Q ss_pred EEEcC
Q 001391 374 VHQFQ 378 (1088)
Q Consensus 374 iwd~~ 378 (1088)
+|++.
T Consensus 438 l~d~~ 442 (719)
T 1z68_A 438 LHDGR 442 (719)
T ss_dssp EECSS
T ss_pred EEECC
Confidence 88774
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-14 Score=172.90 Aligned_cols=231 Identities=11% Similarity=-0.021 Sum_probs=161.0
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEe
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFL 141 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~ 141 (1088)
....|++++|+ |||+ .++.++. |++++||+++.. ....+..|. ..|.+++|+
T Consensus 20 ~~~~~~~~~~~-------~DG~---~la~~s~~~g~~~lw~~~~g----------------~~~~lt~~~~~~~~~~~~s 73 (582)
T 3o4h_A 20 IAVEKYSLQGV-------VDGD---KLLVVGFSEGSVNAYLYDGG----------------ETVKLNREPINSVLDPHYG 73 (582)
T ss_dssp HHSCEEEEEEE-------ETTT---EEEEEEEETTEEEEEEEETT----------------EEEECCSSCCSEECEECTT
T ss_pred hccchheeecC-------CCCC---eEEEEEccCCceeEEEEcCC----------------CcEeeecccccccccccCC
Confidence 34579999999 8883 3433444 899999998532 223444555 689999999
Q ss_pred cccCCCCEEEEEEc---CCcEEEEEcCC--CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 142 KVCNGNRSLAIGCS---DNSIRVWDISN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 142 p~~~d~~~lasgs~---Dg~V~iWd~~~--~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
| | +++++++. +...++|.+.. ......+.........++. .+.++..++++..++ +.+||+.
T Consensus 74 p---d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s---~dg~~~~~~s~~~~~-~~l~d~~----- 140 (582)
T 3o4h_A 74 V---G-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGV---DTGEAVVFTGATEDR-VALYALD----- 140 (582)
T ss_dssp C---S-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEE---ECSSCEEEEEECSSC-EEEEEEE-----
T ss_pred C---C-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeC---CCCCeEEEEecCCCC-ceEEEcc-----
Confidence 9 8 78887765 55567766543 2222244333222222222 233344555555554 4599998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC----CcEEEEEcCCCcccC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD----RSARIWEVRAEYWKD 292 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D----g~v~iWd~~~~~~~~ 292 (1088)
+++...... +.. .+++|+|||+++++++.| +.|++||+.+++.
T Consensus 141 ----------------------------~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-- 187 (582)
T 3o4h_A 141 ----------------------------GGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-- 187 (582)
T ss_dssp ----------------------------TTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC--
T ss_pred ----------------------------CCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc--
Confidence 343333333 333 789999999999988877 7899999988643
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC--cEEEEcC-CCceeEEEcccCCCCeEEEE--------EcCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC--TCRVWGS-DGKQLKMIKEHIGRGIWRCL--------YDSL 359 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg--~i~vWd~-~~~~~~~~~~h~~~~V~~l~--------~~~d 359 (1088)
..+.+|...+..++|+ +..|+++..++ .|++||+ +++.. .+..|.. .+..++ |+||
T Consensus 188 ---------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spd 256 (582)
T 3o4h_A 188 ---------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLGYLPD 256 (582)
T ss_dssp ---------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTT
T ss_pred ---------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-ChhhhhhccccceeEcCC
Confidence 2567788889999999 67888888888 8999999 45554 6666665 466667 9999
Q ss_pred CCEEEEEeCCCCEEEEEc
Q 001391 360 SSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~ 377 (1088)
|.++++++.|+++++|++
T Consensus 257 g~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 257 GRLAVVARREGRSAVFID 274 (582)
T ss_dssp SCEEEEEEETTEEEEEET
T ss_pred CcEEEEEEcCCcEEEEEE
Confidence 999999999999999998
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-13 Score=154.82 Aligned_cols=262 Identities=10% Similarity=0.057 Sum_probs=166.9
Q ss_pred CCCCceEEecCCCcee------e--eeEEEEEeccCCCCCCCCEEEEE-e-CCeEEEEECCCCeeEEEEeeeC-----Cc
Q 001391 2 GKKDLSEWRLDVGQYL------G--EISALCFVHLPSHLSSLPFLLAG-S-GSQVLLYDLEAGTLIRPFQVFH-----GI 66 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~------~--~V~~v~fs~~pd~~~~~~~laag-~-d~~I~vwd~~tg~~~~~~~~~~-----~~ 66 (1088)
.|+.|++||+.+++.. . .+..++|+ |+ +++++++ . ++.|.+||+.+++.+..+...+ +.
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s--~d----g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~ 92 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA--PD----NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGR 92 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC--TT----SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCCCceeEEC--CC----CCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccc
Confidence 5789999999998722 2 46789999 99 7766544 3 5899999999999988877533 23
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC------------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG------------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g------------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
.+.+++|+ |||+ .++++.. ++.|.+||+.... ..+.+..+. +...
T Consensus 93 ~~~~~~~s-------pdg~---~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~-~~~~ 149 (349)
T 1jmx_B 93 SMYSFAIS-------PDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGL------------EAKPVRTFP-MPRQ 149 (349)
T ss_dssp CSSCEEEC-------TTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGG------------GBCCSEEEE-CCSS
T ss_pred cccceEEC-------CCCC---EEEEEcccccccccccccCCCeEEEEECCCcc------------ccceeeecc-CCCc
Confidence 47889999 8873 3444443 4899999998532 112222332 3346
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCce-----------------------eEEEEeeecCCC
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC-----------------------LLYSMKLWGDNL 191 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~-----------------------~~~s~~~~~~s~ 191 (1088)
+.+++|+| +++ +++++ +.|.+||+.+++.+..+..+... ..+.+.+. +
T Consensus 150 ~~~~~~s~---dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 220 (349)
T 1jmx_B 150 VYLMRAAD---DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF---K 220 (349)
T ss_dssp CCCEEECT---TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ccceeECC---CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec---C
Confidence 89999999 998 55554 44999999999887776533200 11112221 1
Q ss_pred CCcEEE-EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCC
Q 001391 192 EALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGS 269 (1088)
Q Consensus 192 ~~~~l~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~ 269 (1088)
++.... .......+..++..+ .......+..+...+.+++|+| +++
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~sp~dg~ 268 (349)
T 1jmx_B 221 DDKQDPATADLLYGYLSVDLKT--------------------------------GKTHTQEFADLTELYFTGLRSPKDPN 268 (349)
T ss_dssp ------CCCEEEEEEEEEETTT--------------------------------CCEEEEEEEECSSCEEEEEECSSCTT
T ss_pred CCcCCccccccceeEEEEeccC--------------------------------CcEEecccccCCCcceeeEecCCCCC
Confidence 110000 000001111233320 0111122233567789999999 999
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEccc
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h 346 (1088)
+++++ ++.|.+||+.+++ .+. .+. ....+.+++|+ +.+|++++.++.|++||. +++.+..+...
T Consensus 269 ~l~~~--~~~v~~~d~~~~~--------~~~--~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 269 QIYGV--LNRLAKYDLKQRK--------LIK--AAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEE--ESEEEEEETTTTE--------EEE--EEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEE--cCeEEEEECccCe--------EEE--EEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99888 8899999998853 222 222 23456789998 567778888999999999 67777776554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-12 Score=148.13 Aligned_cols=285 Identities=12% Similarity=0.093 Sum_probs=176.4
Q ss_pred CCEEEEEe-----CCeEEEEEC--CCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC----CEEEEEE
Q 001391 35 LPFLLAGS-----GSQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----KRVKLFE 103 (1088)
Q Consensus 35 ~~~laag~-----d~~I~vwd~--~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd----~~v~iw~ 103 (1088)
..+++.|+ ++.|.+|++ .+|+....... +...+..++|+ |||+ .++++..+ +.|.+|+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~s-------pdg~---~l~~~~~~~~~~~~v~~~~ 81 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPS-------ADGK---FVYSVNEFSKDQAAVSAFA 81 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEEC-------TTSS---EEEEEECCSSTTCEEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEEC-------CCCC---EEEEEEccCCCCCcEEEEE
Confidence 34566664 367888866 56655433333 44468889999 8873 44455443 7999999
Q ss_pred eccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCCceEEEe------ccC
Q 001391 104 LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEV------HSP 176 (1088)
Q Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~------~~~ 176 (1088)
+.... + ..+.+.....+......+++ ++++|++++ .++.|.+|++.....+..+ ...
T Consensus 82 ~~~~~--g---------~~~~~~~~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 82 FDKEK--G---------TLHLLNTQKTMGADPCYLTT-----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp EETTT--T---------EEEEEEEEECSSSCEEEEEE-----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred EeCCC--C---------cEEEeeEeccCCCCcEEEEE-----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 98531 0 13455555555566777776 556666655 6889999999754332111 110
Q ss_pred -------CceeEEEEeeecCCCCCcEEEEE-ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCce-eEeccccccee
Q 001391 177 -------ERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC-FKLQDQQHTAV 247 (1088)
Q Consensus 177 -------~~~~~~s~~~~~~s~~~~~l~sg-~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~ 247 (1088)
......++++ +|++..++++ ..++.|.+|++........ .. +.. .+.
T Consensus 146 ~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~~v~v~~~~~~~~~~~----------------~~~l~~-----~~~ 201 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRI---TPDGKYLLADDLGTDQIHKFNINPNANADN----------------KEKFLT-----KGT 201 (361)
T ss_dssp CSCTTTCSSCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTCCTTT----------------CCCCEE-----EEE
T ss_pred CCCccccCCCcceEEEE---CCCCCEEEEEeCCCCEEEEEEEcCCCCccc----------------ccceee-----ccc
Confidence 0112344555 6889866554 4589999999872110000 00 000 000
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeec-eeeeccCcceEEEEEC--CCEEEE
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~-~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
.......+...+..++|+|+|+++++++ .++.|.+|++.++.. ..+.. .....+......++|+ +.+|++
T Consensus 202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML------DEIQTVAADTVNAQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE------EEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce------EEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence 0112234456688999999999887777 689999999986532 22221 0223344557899998 567766
Q ss_pred EeC--CCcEEEEcCC---Cc--eeEEEcccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEcC
Q 001391 324 AGE--DCTCRVWGSD---GK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~--Dg~i~vWd~~---~~--~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~ 378 (1088)
+.. ++.|.+|+++ ++ .+..+.. +..+..++|+|+|++|++++ .++.|.+|+++
T Consensus 276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 655 4899999983 44 3334443 33578999999999888887 67899998774
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-12 Score=147.65 Aligned_cols=289 Identities=11% Similarity=0.081 Sum_probs=174.1
Q ss_pred CCCCceEEec--CCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEeC-----CeEEEEECCC--Cee--EEEEeee
Q 001391 2 GKKDLSEWRL--DVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSG-----SQVLLYDLEA--GTL--IRPFQVF 63 (1088)
Q Consensus 2 ~d~~i~iWdl--~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~d-----~~I~vwd~~t--g~~--~~~~~~~ 63 (1088)
+++.|.+|++ .+++ +...+..++|+ || +++|+++.. +.|.+|++.. |+. +.....
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~s--pd----g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~- 97 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPS--AD----GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT- 97 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEEC--TT----SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEEC--CC----CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-
Confidence 4667889876 4454 23446678999 99 888888764 7999998865 543 223322
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEec
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p 142 (1088)
.+.....+++ +++ .++++. ++++|.+|++.......... ........-......+...+.+++|+|
T Consensus 98 ~~~~p~~~~~---------dg~---~l~~~~~~~~~v~~~~~~~~g~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 98 MGADPCYLTT---------NGK---NIVTANYSGGSITVFPIGQDGALLPAS-DVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp SSSCEEEEEE---------CSS---EEEEEETTTTEEEEEEBCTTSCBCSCS-EEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred CCCCcEEEEE---------CCC---EEEEEECCCCEEEEEEeCCCCcCcccc-eeEEccCCCCCccccCCCcceEEEECC
Confidence 2334555555 231 444444 48999999997532100000 000000000000122344578999999
Q ss_pred ccCCCCEEEEEE-cCCcEEEEEcCCCce------E------EEeccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEE
Q 001391 143 VCNGNRSLAIGC-SDNSIRVWDISNSSI------I------LEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVW 208 (1088)
Q Consensus 143 ~~~d~~~lasgs-~Dg~V~iWd~~~~~~------~------~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vw 208 (1088)
++++|++++ .++.|++|++..... + .....+.......+++ +|++.++++++ .++.|.+|
T Consensus 165 ---dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 165 ---DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF---NSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp ---TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE---CTTSSEEEEEETTTCEEEEE
T ss_pred ---CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE---cCCCCEEEEEcCCCCeEEEE
Confidence 999666554 588999999875431 1 1222222333445555 68898777766 68999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---eCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEE
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSD--DRSARIW 283 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iW 283 (1088)
++.++ ....+..+ ..+...+..++|+|||++|+++.. ++.|.+|
T Consensus 239 ~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 239 RYADG-------------------------------MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp EEETT-------------------------------EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred EecCC-------------------------------ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 99721 11122222 234456789999999999876665 4899999
Q ss_pred EcCC--CcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-CCCcEEEEcC---CCceeEEEcc-cCCCCeEEE
Q 001391 284 EVRA--EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIKE-HIGRGIWRC 354 (1088)
Q Consensus 284 d~~~--~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~---~~~~~~~~~~-h~~~~V~~l 354 (1088)
++.. ++ .+.+. .... ...+.+++|+ +.+|++++ .++.+.+|++ +++....... +.. .+.++
T Consensus 288 ~~~~~~g~------~~~~~--~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~-~p~~v 357 (361)
T 3scy_A 288 KVDETNGT------LTKVG--YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVD-KPVCL 357 (361)
T ss_dssp EECTTTCC------EEEEE--EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECS-SEEEE
T ss_pred EEcCCCCc------EEEee--EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCC-CCeEE
Confidence 9963 22 12332 2222 4567889998 56777777 6789999655 4444333222 333 57788
Q ss_pred EEc
Q 001391 355 LYD 357 (1088)
Q Consensus 355 ~~~ 357 (1088)
.|.
T Consensus 358 ~~~ 360 (361)
T 3scy_A 358 KFV 360 (361)
T ss_dssp EEE
T ss_pred EEc
Confidence 875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-14 Score=164.96 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=152.6
Q ss_pred CCceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC----------eeEEE----EeeeCCcceE
Q 001391 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----------TLIRP----FQVFHGIRLH 69 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg----------~~~~~----~~~~~~~~V~ 69 (1088)
+.+++|+.........+..++++ ++ +.+|++|....++||+..+. ..+.. ........|.
T Consensus 23 ~~vri~~~~~~~~~~~~n~lavs--~~----~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (434)
T 2oit_A 23 KKVRIFDSPEELPKERSSLLAVS--NK----YGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH 96 (434)
T ss_dssp CEEECSCCCSSCCCSCCBCEEEE--TT----TTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred eeEEecCCccccCCCCccEEEEe--cC----CCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence 35777765433233458899999 88 78899888544999885321 01111 1112234699
Q ss_pred EEEecccccccCCCccceeeEEE----EEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 70 GISCNFINCTEGSVSTRVTFEVA----LFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 70 ~i~~s~~~~~~~~d~~~~~~~la----~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
+++|+ |++ .+|+ +++ |++|+|||+......... .......+..+.+|.+.|.+++|+|
T Consensus 97 ~l~~s-------pdg----~~lav~~~sgs~d~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~v~~~p-- 159 (434)
T 2oit_A 97 HLALS-------CDN----LTLSACMMSSEYGSIIAFFDVRTFSNEAKQ----QKRPFAYHKLLKDAGGMVIDMKWNP-- 159 (434)
T ss_dssp EEEEC-------TTS----CEEEEEEEETTTEEEEEEEEHHHHHCTTCS----SCCCSEEEECCCSGGGSEEEEEECS--
T ss_pred EEEEc-------CCC----CEEEEEEeccCCCceEEEEEccccccCCcC----CcceeeeeeccCCCCCceEEEEECC--
Confidence 99999 777 4555 333 899999999753100000 0001234567788999999999999
Q ss_pred CC-CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCC
Q 001391 145 NG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 145 ~d-~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
+ +.+|++++.||+|++||+.++..+.....+ ...+.++++ ++++.+|++|+.||.|++||.+
T Consensus 160 -~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~~~v~~v~w---spdg~~lasgs~dg~v~iwd~~------------ 222 (434)
T 2oit_A 160 -TVPSMVAVCLADGSIAVLQVTETVKVCATLPS-TVAVTSVCW---SPKGKQLAVGKQNGTVVQYLPT------------ 222 (434)
T ss_dssp -SCTTEEEEEETTSCEEEEEESSSEEEEEEECG-GGCEEEEEE---CTTSSCEEEEETTSCEEEECTT------------
T ss_pred -CCCCEEEEEECCCeEEEEEcCCCcceeeccCC-CCceeEEEE---cCCCCEEEEEcCCCcEEEEccC------------
Confidence 7 789999999999999999988665544433 334667776 6789999999999999999986
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEe-------CCCCCEEEEEEcCCCCEEEE-EECCC------cEEEEEcCCC
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVS-VSDDR------SARIWEVRAE 288 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s-~s~Dg------~v~iWd~~~~ 288 (1088)
+.....+. .|...|.+++|++++.++++ ++.|| .+++|++...
T Consensus 223 ----------------------~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 223 ----------------------LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ----------------------CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ----------------------CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 11122222 23458999999999888755 34443 3899999864
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=170.49 Aligned_cols=325 Identities=10% Similarity=0.043 Sum_probs=202.5
Q ss_pred CceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCc--c--eEEEEeccccccc
Q 001391 5 DLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGI--R--LHGISCNFINCTE 80 (1088)
Q Consensus 5 ~i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~--~--V~~i~~s~~~~~~ 80 (1088)
.+.+.|+..|.+......++|+ || +.+|+++ +++|++||+.++++...+..+... . ...++||
T Consensus 4 ~~tl~~~~~~~~~~~~~~~~w~--~d----g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S------ 70 (740)
T 4a5s_A 4 TYTLTDYLKNTYRLKLYSLRWI--SD----HEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS------ 70 (740)
T ss_dssp ECCHHHHHHTCSCCCCCCEEEC--SS----SEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC------
T ss_pred ceeHHHHhcCcccccccccEEC--CC----CcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEEC------
Confidence 3556677777777778899999 99 8899887 999999999999987777765432 1 2336778
Q ss_pred CCCccceeeEEEEECC---------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 81 GSVSTRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd---------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|||+ .++..+.+ +.+.+||+.... ...+..|...+...+|+| ||+.||
T Consensus 71 -pdg~---~l~~~~~~~~~~r~~~~~~~~~~d~~~~~----------------~~~l~~~~~~~~~~~~SP---dG~~la 127 (740)
T 4a5s_A 71 -PDGQ---FILLEYNYVKQWRHSYTASYDIYDLNKRQ----------------LITEERIPNNTQWVTWSP---VGHKLA 127 (740)
T ss_dssp -TTSS---EEEEEEEEEECSSSCEEEEEEEEETTTTE----------------ECCSSCCCTTEEEEEECS---STTCEE
T ss_pred -CCCC---EEEEEECCeeeEEEccceEEEEEECCCCc----------------EEEcccCCCcceeeEECC---CCCEEE
Confidence 8883 34444443 567799988532 234567788999999999 999998
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccCCceeEE-----------------EEeeecCCCCCcEEEEEecCC-eEEEEEeccC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLY-----------------SMKLWGDNLEALRIASGTIYN-EIIVWKVDWE 213 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-----------------s~~~~~~s~~~~~l~sg~~dg-~I~vwd~~~~ 213 (1088)
.+. |+.|.+|++.+++............++ ++.+ +|||..||.+..|. .+.+|++...
T Consensus 128 ~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w---SpDg~~la~~~~d~~~v~~~~~~~~ 203 (740)
T 4a5s_A 128 YVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW---SPNGTFLAYAQFNDTEVPLIEYSFY 203 (740)
T ss_dssp EEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE---CTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred EEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEE---CCCCCEEEEEEEcccCCceEEEEee
Confidence 884 789999999887754322211111111 1222 79999999877654 4888887522
Q ss_pred cccc-CCC--CCCCccCCCCCCCCceeEeccccc---cee-eeEEEe------CCCCCEEEEEEcCCCCEEEEEEC----
Q 001391 214 HVAP-LLN--SPEGNHAHGSSSDFKCFKLQDQQH---TAV-NLFRLV------GHEGSIFRIEWSSCGSKLVSVSD---- 276 (1088)
Q Consensus 214 ~~~~-~~~--~~~~~s~~~~~~~~~~~~~~~~~~---~~~-~~~~~~------gh~~~V~~v~~sp~g~~l~s~s~---- 276 (1088)
.... ... ........|.......+.+|+... ... ....+. +|...+..++|+|||+.++....
T Consensus 204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~ 283 (740)
T 4a5s_A 204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN 283 (740)
T ss_dssp CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC
Confidence 1110 000 111222333333445677777653 210 233443 38888999999999997665432
Q ss_pred CCcEEEEEcCCCc----ccCCCCceeeeceeeeccCcceE-----EEEEC--CCEEE-EEeC-CC--cEEEEcCCCceeE
Q 001391 277 DRSARIWEVRAEY----WKDSDSIEEVGSSVLYGHNARVW-----DCCLT--DSFII-TAGE-DC--TCRVWGSDGKQLK 341 (1088)
Q Consensus 277 Dg~v~iWd~~~~~----~~~~~~~~~i~~~~~~~h~~~I~-----~v~~~--~~~l~-sg~~-Dg--~i~vWd~~~~~~~ 341 (1088)
+..|++||+.+++ + . .+......+|...|. ...|+ +..|+ ..++ +| .|.+|+.++....
T Consensus 284 ~~~i~~~d~~tg~~~~~~-----~-~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 284 YSVMDICDYDESSGRWNC-----L-VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEEEEEEETTTTEEEE-----C-GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEEEEECCCCccccce-----e-EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 3479999998865 1 0 111012245555544 67788 45555 5553 44 5788888666666
Q ss_pred EEcccCCCCeEEEEEcCCCCEEE-EEeC----CCCEEEEEc
Q 001391 342 MIKEHIGRGIWRCLYDSLSSLLV-TAGF----DSAIKVHQF 377 (1088)
Q Consensus 342 ~~~~h~~~~V~~l~~~~dg~~l~-tg~~----Dg~I~iwd~ 377 (1088)
.+..... .|..+.. +|++.|+ ++.. .+...||.+
T Consensus 358 ~lT~g~~-~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 358 FITKGTW-EVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp ESCCSSS-CEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred ecccCCE-EEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 6654443 4666542 3455444 4443 244555554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-12 Score=142.85 Aligned_cols=276 Identities=9% Similarity=0.015 Sum_probs=170.3
Q ss_pred EEEEEe-C--CeEEEEEC--CCCeeEE--EEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEec-cCC
Q 001391 37 FLLAGS-G--SQVLLYDL--EAGTLIR--PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN-FEL 108 (1088)
Q Consensus 37 ~laag~-d--~~I~vwd~--~tg~~~~--~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~-~~~ 108 (1088)
+|++|+ . +.|.+|++ .+|++.. .........+..++|+ |||+ .++++..+ .|.+|++. ...
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~s-------pdg~---~l~~~~~~-~v~~~~~~~~g~ 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD-------HERK---NIYGAAMK-KWSSFAVKSPTE 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC-------TTSS---EEEEEEBT-EEEEEEEEETTE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEEC-------CCCC---EEEEEccc-eEEEEEECCCCC
Confidence 355554 2 56887764 5676432 2221122358899999 8873 34444445 99999997 321
Q ss_pred CCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCE--EEEEE-------------cCCcEEEEEcC-CCceEEE
Q 001391 109 SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGC-------------SDNSIRVWDIS-NSSIILE 172 (1088)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~--lasgs-------------~Dg~V~iWd~~-~~~~~~~ 172 (1088)
...+.....+ +.+.+++|+| ++++ ++++. .++++.+|++. .++....
T Consensus 73 -------------~~~~~~~~~~-g~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~ 135 (365)
T 1jof_A 73 -------------IVHEASHPIG-GHPRANDADT---NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN 135 (365)
T ss_dssp -------------EEEEEEEECC-SSGGGGCTTS---CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE
T ss_pred -------------EEEeeEeecC-CCCccEEECC---CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcce
Confidence 1111111111 2255688999 9984 55553 68999999997 4655433
Q ss_pred ecc---CCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEec-cCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 173 VHS---PERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 173 ~~~---~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
+.. ........+++ +|++.++++++. ++.|.+|++. ++ ...
T Consensus 136 ~~~~~~~~~~~~~~~~~---spdG~~l~~~~~~~~~v~~~~~~~~g-------------------------------~~~ 181 (365)
T 1jof_A 136 VQNYEYQENTGIHGMVF---DPTETYLYSADLTANKLWTHRKLASG-------------------------------EVE 181 (365)
T ss_dssp EEEEECCTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTS-------------------------------CEE
T ss_pred EeeEEeCCCCcceEEEE---CCCCCEEEEEcCCCCEEEEEEECCCC-------------------------------CEE
Confidence 321 12233555655 788988877654 6899999986 11 112
Q ss_pred eeEEEe--CCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCC--CcccCCCCceeeeceee----eccCc------ceE
Q 001391 248 NLFRLV--GHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRA--EYWKDSDSIEEVGSSVL----YGHNA------RVW 312 (1088)
Q Consensus 248 ~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~--~~~~~~~~~~~i~~~~~----~~h~~------~I~ 312 (1088)
.+..+. .|...+..++|+|+|+++++++. ++.|.+|++.. ++... ..+.+. .+ .+|.. .+.
T Consensus 182 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~--~~~~~~--~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY--THHSFP--LIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--EEEEEE--SSCTTCCCBCTTTSSBSEEE
T ss_pred EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE--ccceEE--cCCCCcCCcccccccccccc
Confidence 223333 34667999999999999888775 78999998763 22100 000111 11 12332 588
Q ss_pred EEE-EC--CCEEEEEeCCC------cEEEEcC--CCceeE---EEcccCCCCeEEEEEcC---CCCEEEEEeCC-CCEEE
Q 001391 313 DCC-LT--DSFIITAGEDC------TCRVWGS--DGKQLK---MIKEHIGRGIWRCLYDS---LSSLLVTAGFD-SAIKV 374 (1088)
Q Consensus 313 ~v~-~~--~~~l~sg~~Dg------~i~vWd~--~~~~~~---~~~~h~~~~V~~l~~~~---dg~~l~tg~~D-g~I~i 374 (1088)
.++ |+ +++|+++..+. +|++|++ +++... ....+.. .+..++|+| ||++|++++.+ +.|++
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-~~~~~a~sp~~~dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-CcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence 999 98 56776665432 8999998 355433 1333333 467889999 89999998875 89999
Q ss_pred EEcCC
Q 001391 375 HQFQA 379 (1088)
Q Consensus 375 wd~~~ 379 (1088)
|+++.
T Consensus 337 ~~~~~ 341 (365)
T 1jof_A 337 YRWKD 341 (365)
T ss_dssp EEEET
T ss_pred EEEch
Confidence 99854
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-12 Score=143.10 Aligned_cols=251 Identities=9% Similarity=-0.018 Sum_probs=158.8
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECC-CCeeEEEEeeeCCcceEEEEecccccccCCCccceee-EEEEE--
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF-EVALF-- 94 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~-tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~-~la~~-- 94 (1088)
.+..++|+ |+ +++|+++..+.|.+||+. +|++...........+.+++|+ |||+ . ++++.
T Consensus 41 ~~~~~a~s--pd----g~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~s-------pdg~---~l~~~~~~~ 104 (365)
T 1jof_A 41 PISWMTFD--HE----RKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDAD-------TNTR---AIFLLAAKQ 104 (365)
T ss_dssp CCSEEEEC--TT----SSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTT-------SCCE---EEEEEECSS
T ss_pred CCcEEEEC--CC----CCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEEC-------CCCC---EEEEEEecC
Confidence 47789999 99 888888774499999997 8877654432211135567787 8872 3 33332
Q ss_pred ------------CCCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEc-CCcEE
Q 001391 95 ------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIR 160 (1088)
Q Consensus 95 ------------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~ 160 (1088)
.++++.+|++.... . ....+..+. .+...+.+++|+| ||++|+++.. ++.|+
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g---~--------~~~~~~~~~~~~~~~~~~~~~sp---dG~~l~~~~~~~~~v~ 170 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETG---K--------LEKNVQNYEYQENTGIHGMVFDP---TETYLYSADLTANKLW 170 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTC---C--------EEEEEEEEECCTTCCEEEEEECT---TSSEEEEEETTTTEEE
T ss_pred CcceeccceeecCCceEEEEccCCCC---c--------CcceEeeEEeCCCCcceEEEECC---CCCEEEEEcCCCCEEE
Confidence 57899999997422 0 011122111 3557899999999 9998887754 68999
Q ss_pred EEEcC-CCceE--EEeccCC-ceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 161 VWDIS-NSSII--LEVHSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 161 iWd~~-~~~~~--~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
+|++. +++.. ..+..+. ......+++ +|++.++++++. ++.|.+|++...
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~---spdg~~l~v~~~~~~~v~v~~~~~~---------------------- 225 (365)
T 1jof_A 171 THRKLASGEVELVGSVDAPDPGDHPRWVAM---HPTGNYLYALMEAGNRICEYVIDPA---------------------- 225 (365)
T ss_dssp EEEECTTSCEEEEEEEECSSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTT----------------------
T ss_pred EEEECCCCCEEEeeeEecCCCCCCCCEeEE---CCCCCEEEEEECCCCeEEEEEEeCC----------------------
Confidence 99998 67653 2333221 233455655 688988877664 789999988610
Q ss_pred eeEecccccceee------eEEE----eCCCC------CEEEEE-EcCCCCEEEEEECC-C-----cEEEEEcC-CCccc
Q 001391 236 CFKLQDQQHTAVN------LFRL----VGHEG------SIFRIE-WSSCGSKLVSVSDD-R-----SARIWEVR-AEYWK 291 (1088)
Q Consensus 236 ~~~~~~~~~~~~~------~~~~----~gh~~------~V~~v~-~sp~g~~l~s~s~D-g-----~v~iWd~~-~~~~~ 291 (1088)
+++. +..+ .+|.. .+..++ |+|||++|+++..+ . .|.+|++. +++.
T Consensus 226 ---------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~- 295 (365)
T 1jof_A 226 ---------THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI- 295 (365)
T ss_dssp ---------TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-
T ss_pred ---------CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-
Confidence 1111 1111 12333 588999 99999998776543 2 89999996 3322
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC-----CCEEEEEeCC-CcEEEEcCCCcee
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGED-CTCRVWGSDGKQL 340 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~-----~~~l~sg~~D-g~i~vWd~~~~~~ 340 (1088)
..+. .....+...+..++|+ +.+|++++.+ ++|++|+++.+.+
T Consensus 296 -----~~~~-~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 296 -----EKQL-FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp -----EEEE-EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred -----EEee-eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 1111 0122233334445554 5788888865 8999999854444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-11 Score=138.51 Aligned_cols=273 Identities=9% Similarity=0.097 Sum_probs=181.9
Q ss_pred CCCceEEecCCCceeee-----eEEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeC--
Q 001391 3 KKDLSEWRLDVGQYLGE-----ISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH-- 64 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~~~-----V~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~-- 64 (1088)
|++|.+||..+++.... --.++|+ || +++|+++. ++.|.+||..+++.+.++....
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p~i~~s--pd----g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNGHVQVS--ND----GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEEEEEEC--TT----SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred cCeEEEEECCCCeEEEEecCCCCCceEEC--CC----CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 67899999999873211 1189999 99 88888864 3679999999999999887642
Q ss_pred ---CcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeee-ccCCCCcEEEE
Q 001391 65 ---GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDV 138 (1088)
Q Consensus 65 ---~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~I~~v 138 (1088)
+....+++++ |||+ .++++. + +++|.+||+... +.+.. +... ....+
T Consensus 104 ~~~g~~p~~i~~s-------pdg~---~l~v~n~~~~~~v~v~d~~~~---------------~~~~~~i~~~--~~~~v 156 (361)
T 2oiz_A 104 VQGLNYDGLFRQT-------TDGK---FIVLQNASPATSIGIVDVAKG---------------DYVEDVTAAA--GCWSV 156 (361)
T ss_dssp CCBCCCGGGEEEC-------TTSS---EEEEEEESSSEEEEEEETTTT---------------EEEEEEGGGT--TEEEE
T ss_pred cccCCCcceEEEC-------CCCC---EEEEECCCCCCeEEEEECCCC---------------cEEEEEecCC--Cccee
Confidence 2346789999 8884 444443 4 689999999853 34444 3321 12336
Q ss_pred EEecccCCC-CEEEEEEcCCcEEEEEcCC-CceEEEec------cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 139 CFLKVCNGN-RSLAIGCSDNSIRVWDISN-SSIILEVH------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 139 ~f~p~~~d~-~~lasgs~Dg~V~iWd~~~-~~~~~~~~------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
.+.| ++ ..+++.+.||.+.+|++.. ++...... .... .+ +....+++..++..+.++.|.++|+
T Consensus 157 ~~~p---~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~~----~~~~~~~g~~~~~~~~~~~v~v~d~ 228 (361)
T 2oiz_A 157 IPQP---NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD-PI----FIAPALDKDKAHFVSYYGNVYSADF 228 (361)
T ss_dssp EECT---TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS-CB----CSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred EEcC---CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC-ce----EEEecccCCEEEEEeCCCeEEEEEe
Confidence 6777 54 6778888999999999865 55442221 1111 00 1111345556666678899999998
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC------CC----CCEEEEEEcCCCCEEEEEEC----
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HE----GSIFRIEWSSCGSKLVSVSD---- 276 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g------h~----~~V~~v~~sp~g~~l~s~s~---- 276 (1088)
.... ...+..+.- +. .....++|+|+++++..+..
T Consensus 229 ~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 229 SGDE-------------------------------VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp SSSS-------------------------------CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred cCCC-------------------------------ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 6111 011111110 00 11113689999888776543
Q ss_pred -------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CC--ceeEEEc
Q 001391 277 -------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKMIK 344 (1088)
Q Consensus 277 -------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~--~~~~~~~ 344 (1088)
...|.+||+.+. +.+. .+..+. +++++|+ +.+|++++. ++|.+||. ++ +.+..+.
T Consensus 278 ~~~~~~~~~~v~viD~~t~--------~~v~--~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTK--------QRVA--RIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp TTCTTCCCSEEEEEETTTT--------EEEE--EEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET
T ss_pred cccccCCCceEEEEECCCC--------cEEE--EEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec
Confidence 348999999885 4444 455555 8999998 678888887 99999999 77 8888876
Q ss_pred ccCCCCeEEEEEcCCCC
Q 001391 345 EHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~ 361 (1088)
.+.. ..+.++++|+|.
T Consensus 345 ~~G~-~P~~~~~~p~G~ 360 (361)
T 2oiz_A 345 GAAE-ASLQVQFHPVGG 360 (361)
T ss_dssp TSCS-SEEEEEECCCSC
T ss_pred cCCC-CcEEEEecCCCC
Confidence 5554 588999999985
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=9.6e-12 Score=141.37 Aligned_cols=257 Identities=10% Similarity=0.012 Sum_probs=169.6
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE----------CCCEEEEEEeccCCCCCC
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----------gd~~v~iw~l~~~~~~~~ 112 (1088)
++.|.+||..+++.+.++..... - .++|+ ||++ .+.++. .+++|.+||+.+
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~--p-~i~~s-------pdg~---~lyv~~~~~~~~~~g~~~~~v~v~d~~t------ 90 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFN--G-HVQVS-------NDGK---KIYTMTTYHERITRGKRSDVVEVWDADK------ 90 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEE--E-EEEEC-------TTSS---EEEEEEEEETTSSSSCEEEEEEEEETTT------
T ss_pred cCeEEEEECCCCeEEEEecCCCC--C-ceEEC-------CCCC---EEEEEEecccccccCCCCCEEEEEECcC------
Confidence 46999999999999988876432 3 89999 8883 444443 256899999874
Q ss_pred CCCCccccccceeeeccC------CCCcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCceEEE-eccCCceeEEE
Q 001391 113 QYQPETCVNLSLVQSLPR------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILE-VHSPERCLLYS 183 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~------h~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~~~~-~~~~~~~~~~s 183 (1088)
++.+..+.. +......++|+| ||++|+++.. +++|.+||+.+++.+.. +..+.. +.
T Consensus 91 ---------~~~~~~i~~~~~~~~~g~~p~~i~~sp---dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~---~~ 155 (361)
T 2oiz_A 91 ---------LTFEKEISLPPKRVQGLNYDGLFRQTT---DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC---WS 155 (361)
T ss_dssp ---------CCEEEEEEECTTBCCBCCCGGGEEECT---TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE---EE
T ss_pred ---------CcEEEEEEcCccccccCCCcceEEECC---CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc---ce
Confidence 233333322 234567899999 9999988864 68999999999988887 654332 12
Q ss_pred EeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE------EEeCCC
Q 001391 184 MKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF------RLVGHE 256 (1088)
Q Consensus 184 ~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~gh~ 256 (1088)
+.+ .|+ ...+++.+.||.+.+|+... .++... .+..+.
T Consensus 156 v~~---~p~~~~~~~~~~~dg~~~~v~~~~--------------------------------~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 156 VIP---QPNRPRSFMTICGDGGLLTINLGE--------------------------------DGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEE---CTTSSSEEEEEETTSSEEEEEECT--------------------------------TSSEEEEEECCCCSCTTT
T ss_pred eEE---cCCCCeeEEEECCCCcEEEEEECC--------------------------------CCcEeeeccccceEcCCC
Confidence 222 233 36778888999999999861 011110 111112
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec----cC----cceEEEEEC--CCEEEEEeC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG----HN----ARVWDCCLT--DSFIITAGE 326 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~----h~----~~I~~v~~~--~~~l~sg~~ 326 (1088)
..+ .+.++|++..++..+.++.|.++|+..... ..+....... +. .....++|+ +..++.+..
T Consensus 201 ~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 201 DPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV------KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp SCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC------EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred Cce-EEEecccCCEEEEEeCCCeEEEEEecCCCc------eecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 221 233456777787788899999999876432 1111001100 00 111124566 455555443
Q ss_pred -----------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 -----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 -----------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.++|.+||+ +++.+..+..+. +++++|+|||++|++++. ++|.+||..+
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred cCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 348999999 788888887765 789999999999999887 9999999854
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-12 Score=146.64 Aligned_cols=260 Identities=8% Similarity=-0.067 Sum_probs=162.1
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEE-----EEecccccccCCCccceeeEEEEEC-CCE--EEEEEeccCCCCCCCCCC
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHG-----ISCNFINCTEGSVSTRVTFEVALFG-EKR--VKLFELNFELSPNSQYQP 116 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~-----i~~s~~~~~~~~d~~~~~~~la~~g-d~~--v~iw~l~~~~~~~~~~~~ 116 (1088)
....+|..+|..+..+..+.. ..+. .+|| |||+ .++.++. ++. |.+||+..
T Consensus 11 ~~~~~~~~~g~~~~~lt~~~~-~~~~~~~~~~~~S-------pDg~---~l~~~~~~~g~~~l~~~d~~~---------- 69 (388)
T 3pe7_A 11 FDTYQDASTGAQVTRLTPPDV-TCHRNYFYQKCFT-------RDGS---KLLFGGAFDGPWNYYLLDLNT---------- 69 (388)
T ss_dssp CEEEECTTTCCEEEECSCTTS-CEECCCTTSCCBC-------TTSC---EEEEEECTTSSCEEEEEETTT----------
T ss_pred ceEEecCCCCcceEEecCCcc-cccchhhcCccCC-------CCCC---EEEEEEcCCCCceEEEEeCCC----------
Confidence 344567888888888776554 3555 7788 8883 4444454 554 66666653
Q ss_pred ccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 117 ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 117 ~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
.+......++...+..++|+| |++.|+.++.++.|++||+.+++.......+...... ..+ ..++++..+
T Consensus 70 -----g~~~~lt~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~-~~~-~~~~dg~~l 139 (388)
T 3pe7_A 70 -----QVATQLTEGRGDNTFGGFLSP---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGY-GTW-VANSDCTKL 139 (388)
T ss_dssp -----CEEEECCCSSCBCSSSCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE-EEE-EECTTSSEE
T ss_pred -----CceEEeeeCCCCCccceEEcC---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccc-cce-eECCCCCee
Confidence 233444456666666788999 9999999999999999999998876655544432211 111 115777777
Q ss_pred EEE----------------------ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 197 ASG----------------------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 197 ~sg----------------------~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+.. ..++.|.+||+. +++ ...+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---------------------------------~g~-~~~l~~ 185 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK---------------------------------TGE-STVILQ 185 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT---------------------------------TCC-EEEEEE
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECC---------------------------------CCc-eEEeec
Confidence 642 233567777776 332 334455
Q ss_pred CCCCEEEEEEcC-CCCEEEEEECC------CcEEEEEcCCCcccCCCCceeeeceeeeccC--cceEEEEEC--CCEEEE
Q 001391 255 HEGSIFRIEWSS-CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN--ARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 255 h~~~V~~v~~sp-~g~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~--~~I~~v~~~--~~~l~s 323 (1088)
+...+..++|+| +|+.|+.++.+ ..|.++|...... + .+..+. ..+...+|+ +..|+.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~-----~l~~~~~~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM------R-----KVKTHAEGESCTHEFWVPDGSALVY 254 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC------E-----ESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce------E-----EeeeCCCCcccccceECCCCCEEEE
Confidence 677899999999 99999887764 3677778765432 1 233333 357788898 455544
Q ss_pred -EeCCC----cEEEEcC-CCce--eEEEcccCC--CCeEEEEEcCCCCEEEEE---------eCCCCEEEEEcCCC
Q 001391 324 -AGEDC----TCRVWGS-DGKQ--LKMIKEHIG--RGIWRCLYDSLSSLLVTA---------GFDSAIKVHQFQAF 380 (1088)
Q Consensus 324 -g~~Dg----~i~vWd~-~~~~--~~~~~~h~~--~~V~~l~~~~dg~~l~tg---------~~Dg~I~iwd~~~~ 380 (1088)
...++ .|++||+ +++. +..+.++.. .....++|+|||+.|+.. ..+..|.+||+.+.
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 33322 3999999 4442 223332110 001123689999877753 45678999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-11 Score=132.82 Aligned_cols=234 Identities=8% Similarity=0.106 Sum_probs=166.1
Q ss_pred ceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeec------cCCCCcEEEEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL------PRLSHWVFDVC 139 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l------~~h~~~I~~v~ 139 (1088)
.+.+++++ +++ .++++ ..++.|.+|+.+. +.+..+ .+|...+.+++
T Consensus 31 ~p~~v~~~-------~~g----~l~v~~~~~~~i~~~d~~g----------------~~~~~~~~~~~~~~~~~~p~~i~ 83 (286)
T 1q7f_A 31 EPSGVAVN-------AQN----DIIVADTNNHRIQIFDKEG----------------RFKFQFGECGKRDSQLLYPNRVA 83 (286)
T ss_dssp CEEEEEEC-------TTC----CEEEEEGGGTEEEEECTTS----------------CEEEEECCBSSSTTCBSSEEEEE
T ss_pred CCceEEEC-------CCC----CEEEEECCCCEEEEECCCC----------------cEEEEecccCCCcccccCceEEE
Confidence 57889998 776 45555 4589999999762 122222 24556789999
Q ss_pred Ee-cccCCCCEEEEEEc-CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcccc
Q 001391 140 FL-KVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 140 f~-p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~ 217 (1088)
+. + ++.++++... ++.|++|| .+++.+..+..........+++ ++++.++++...++.|.+||..
T Consensus 84 ~~~~---~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~------ 150 (286)
T 1q7f_A 84 VVRN---SGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV---DNKGRIIVVECKVMRVIIFDQN------ 150 (286)
T ss_dssp EETT---TTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE---CTTSCEEEEETTTTEEEEECTT------
T ss_pred EEcC---CCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE---eCCCCEEEEECCCCEEEEEcCC------
Confidence 95 5 6666665543 88999999 5677776665433334455655 5678888887788999999965
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCC
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 295 (1088)
+..+..+. ++...+.+++++|+|+.+++.+.++.|++||....
T Consensus 151 ----------------------------g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------- 195 (286)
T 1q7f_A 151 ----------------------------GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------- 195 (286)
T ss_dssp ----------------------------SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-------
T ss_pred ----------------------------CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-------
Confidence 22333332 45567999999999998888888999999997542
Q ss_pred ceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC-cEEEEcCCCceeEEEcccCC-CCeEEEEEcCCCCEEEEEeCCCC
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC-TCRVWGSDGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg-~i~vWd~~~~~~~~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
.+..+...++...+..++++ +.++++...++ .|++|+.+++.+..+..+.. ..+.+++++|+|+++++ +.|+.
T Consensus 196 --~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 196 --YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR 272 (286)
T ss_dssp --EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred --EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe
Confidence 22201112334578899997 56777777775 99999998888888766543 13789999999987777 67999
Q ss_pred EEEEEcC
Q 001391 372 IKVHQFQ 378 (1088)
Q Consensus 372 I~iwd~~ 378 (1088)
|++|++.
T Consensus 273 v~v~~~~ 279 (286)
T 1q7f_A 273 LYIYRYV 279 (286)
T ss_dssp EEEEECS
T ss_pred EEEEEcc
Confidence 9999984
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-11 Score=151.79 Aligned_cols=307 Identities=10% Similarity=0.079 Sum_probs=184.6
Q ss_pred CCCceEEecCCCcee------------eeeEEEEEeccCCCCCCCCEEEEEeC----------CeEEEEECCCCeeEEEE
Q 001391 3 KKDLSEWRLDVGQYL------------GEISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPF 60 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~------------~~V~~v~fs~~pd~~~~~~~laag~d----------~~I~vwd~~tg~~~~~~ 60 (1088)
|++|++||+.+++.. .....++|| || +++|+.+++ +.+.+||+.++++.. +
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--pd----g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l 107 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PD----GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E 107 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEEC--CC----CCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c
Confidence 788999999998721 112347889 99 899998875 677899999998653 4
Q ss_pred eeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE----
Q 001391 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF---- 136 (1088)
Q Consensus 61 ~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~---- 136 (1088)
..+.+ .+...+|| ||| ..||...++.|.+|++.......-.+ .......+.++.++|+
T Consensus 108 ~~~~~-~~~~~~~S-------PdG----~~la~~~~~~i~~~~~~~~~~~~lt~------~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 108 ERIPN-NTQWVTWS-------PVG----HKLAYVWNNDIYVKIEPNLPSYRITW------TGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp SCCCT-TEEEEEEC-------SST----TCEEEEETTEEEEESSTTSCCEECCS------CCBTTTEEESBCCHHHHHHT
T ss_pred ccCCC-cceeeEEC-------CCC----CEEEEEECCeEEEEECCCCceEEEcC------CCCccceecCcccccccchh
Confidence 44444 69999999 898 56777788999999987543000000 0011112334444443
Q ss_pred -----EEEEecccCCCCEEEEEEcCC------------------------------------cEEEEEcCC---Cc--eE
Q 001391 137 -----DVCFLKVCNGNRSLAIGCSDN------------------------------------SIRVWDISN---SS--II 170 (1088)
Q Consensus 137 -----~v~f~p~~~d~~~lasgs~Dg------------------------------------~V~iWd~~~---~~--~~ 170 (1088)
.+.|+| ||+.||.++.|. +|++||+.+ ++ ..
T Consensus 170 ~~~~~~~~wSp---Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 170 FSAYSALWWSP---NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp SSSSBCEEECT---TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred cCCCcceEECC---CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 489999 999999876432 478889888 63 23
Q ss_pred EEeccC-----CceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 171 LEVHSP-----ERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 171 ~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
..+..+ ....+..+.+ +||+..++.... +..|.+||+.+++...
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~w---spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~------------------------ 299 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTW---ATQERISLQWLRRIQNYSVMDICDYDESSGRW------------------------ 299 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEE---EETTEEEEEEEESSTTEEEEEEEEEETTTTEE------------------------
T ss_pred EEecCCccCCCCCeEEEEEEE---eCCCeEEEEEeCCCCCEEEEEEEECCCCcccc------------------------
Confidence 334331 3344556665 578876665433 3479999988322000
Q ss_pred cccceeeeEE--EeCCCCCEE-----EEEEcCCCCEEE-EEECC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 242 QQHTAVNLFR--LVGHEGSIF-----RIEWSSCGSKLV-SVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 242 ~~~~~~~~~~--~~gh~~~V~-----~v~~sp~g~~l~-s~s~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
....+.. -.+|.+.|. ...|+|||+.++ ..+.+ ..|.+||..++.. + .+......
T Consensus 300 ---~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~------~-----~lT~g~~~ 365 (740)
T 4a5s_A 300 ---NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC------T-----FITKGTWE 365 (740)
T ss_dssp ---EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC------E-----ESCCSSSC
T ss_pred ---ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce------E-----ecccCCEE
Confidence 0001111 145666655 788999999877 66643 4688888876533 1 22222334
Q ss_pred eEEEE-ECCCEE-EEEeC----CCcEEEE--cCCCceeE-EEccc---CCCCeEEEEEcCCCCEEEEEeCC---CCEEEE
Q 001391 311 VWDCC-LTDSFI-ITAGE----DCTCRVW--GSDGKQLK-MIKEH---IGRGIWRCLYDSLSSLLVTAGFD---SAIKVH 375 (1088)
Q Consensus 311 I~~v~-~~~~~l-~sg~~----Dg~i~vW--d~~~~~~~-~~~~h---~~~~V~~l~~~~dg~~l~tg~~D---g~I~iw 375 (1088)
+..+. ++++.| +++.. .+...+| ++.+.... .+... ....+....|+|++++++..... ..+.++
T Consensus 366 v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~ 445 (740)
T 4a5s_A 366 VIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (740)
T ss_dssp EEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred EEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEE
Confidence 44433 555544 44444 2334444 44544333 34321 11258899999999976655433 345566
Q ss_pred EcC
Q 001391 376 QFQ 378 (1088)
Q Consensus 376 d~~ 378 (1088)
+..
T Consensus 446 ~~~ 448 (740)
T 4a5s_A 446 SSV 448 (740)
T ss_dssp ETT
T ss_pred ECC
Confidence 653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-12 Score=142.74 Aligned_cols=273 Identities=12% Similarity=-0.025 Sum_probs=170.0
Q ss_pred EEEeccCCCCCCCCEEEEEeC--C--eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 23 LCFVHLPSHLSSLPFLLAGSG--S--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d--~--~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
.+|| || +++|+.+.+ + .|.+||+.+++.......+ ...+.++.|+ |||+ .++.+..++.
T Consensus 41 ~~~S--pD----g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~-~~~~~~~~~s-------pdg~---~l~~~~~~~~ 103 (388)
T 3pe7_A 41 KCFT--RD----GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR-GDNTFGGFLS-------PDDD---ALFYVKDGRN 103 (388)
T ss_dssp CCBC--TT----SCEEEEEECTTSSCEEEEEETTTCEEEECCCSS-CBCSSSCEEC-------TTSS---EEEEEETTTE
T ss_pred ccCC--CC----CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC-CCCccceEEc-------CCCC---EEEEEeCCCe
Confidence 7899 99 888888763 4 5999999998876655543 3345577899 8883 4445555789
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE--ecccCCCCEEEEE----------------------E
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF--LKVCNGNRSLAIG----------------------C 154 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f--~p~~~d~~~lasg----------------------s 154 (1088)
|.+||+.... ....+..+...+....+ +| ++.+++.. .
T Consensus 104 l~~~d~~~g~---------------~~~~~~~~~~~~~~~~~~~~~---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 104 LMRVDLATLE---------------ENVVYQVPAEWVGYGTWVANS---DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp EEEEETTTCC---------------EEEEEECCTTEEEEEEEEECT---TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EEEEECCCCc---------------ceeeeechhhcccccceeECC---CCCeeccccccCcccccccccchhhhhhccC
Confidence 9999998643 22223344555544444 67 88887743 2
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-CCcEEEEEecC------CeEEEEEeccCccccCCCCCCCccC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d------g~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
.+..|.+||+.+++......... .+..+.+ +| ++..|+..... ..|.++|..
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~--~~~~~~~---sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---------------- 224 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ--WLGHPIY---RPYDDSTVAFCHEGPHDLVDARMWLINED---------------- 224 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS--CEEEEEE---ETTEEEEEEEEECSCTTTSSCSEEEEETT----------------
T ss_pred CcceEEEEECCCCceEEeecCCc--cccccEE---CCCCCCEEEEEEecCCCCCcceEEEEeCC----------------
Confidence 34679999999887554433222 2334444 57 88888776653 356666665
Q ss_pred CCCCCCCceeEecccccceeeeEEEeCCC--CCEEEEEEcCCCCEEEEEECC-C----cEEEEEcCCCcccCCCCceeee
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSSCGSKLVSVSDD-R----SARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~--~~V~~v~~sp~g~~l~s~s~D-g----~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
.. ....+..+. ..+...+|+|||+.|+..+.+ + .|++||+.+++. +.+.
T Consensus 225 -----------------~~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~~l~ 280 (388)
T 3pe7_A 225 -----------------GT-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN------RQLT 280 (388)
T ss_dssp -----------------SC-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE------EEEE
T ss_pred -----------------CC-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce------EEEE
Confidence 11 222333333 357889999999977654432 2 399999988643 2221
Q ss_pred ceeeeccCcce---EEEEEC--CCEEEEE---------eCCCcEEEEcCCCceeEEEcccCCC----------CeEEEEE
Q 001391 301 SSVLYGHNARV---WDCCLT--DSFIITA---------GEDCTCRVWGSDGKQLKMIKEHIGR----------GIWRCLY 356 (1088)
Q Consensus 301 ~~~~~~h~~~I---~~v~~~--~~~l~sg---------~~Dg~i~vWd~~~~~~~~~~~h~~~----------~V~~l~~ 356 (1088)
...++.... ....|+ +..|+.. ..+..|++||+.+..+..+..+... .+.+++|
T Consensus 281 --~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 358 (388)
T 3pe7_A 281 --SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSF 358 (388)
T ss_dssp --EECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred --cCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccC
Confidence 222211000 011344 4444432 5567899999966666666655430 2678899
Q ss_pred cCCCCEEEEEe-CCCCEEEEEc
Q 001391 357 DSLSSLLVTAG-FDSAIKVHQF 377 (1088)
Q Consensus 357 ~~dg~~l~tg~-~Dg~I~iwd~ 377 (1088)
+|||+.|+..+ .+|...+|.+
T Consensus 359 spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 359 TPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCCEEEEEecCCCceeEEEE
Confidence 99999777655 5788888866
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-10 Score=127.23 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=167.6
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-----CceeEEEEeeecCCCCCcEEEEEec-CC
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTI-YN 203 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~-dg 203 (1088)
++-..+.+++++| ++.++++...++.|.+||.. ++.+..+... .......+++. .+++.++++... ++
T Consensus 27 g~~~~p~~v~~~~---~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~--~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGC
T ss_pred CccCCCceEEECC---CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE--cCCCeEEEEcCCCCC
Confidence 5567799999999 99988888889999999987 5555555321 11223444441 345666666543 88
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
.|.+||.. +..+..+. .+...+.+++++|+|+.+++...++.|.+
T Consensus 101 ~i~~~d~~----------------------------------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 101 QIQIYNQY----------------------------------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVII 146 (286)
T ss_dssp EEEEECTT----------------------------------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEEECCC----------------------------------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 99999943 33344443 34567899999999998888888899999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccC-CCCeEEEEEcCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI-GRGIWRCLYDSL 359 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~-~~~V~~l~~~~d 359 (1088)
||.... .+..+...++...+..++++ +.++++...++.|++|+.+++.+..+..+. ...+..++++++
T Consensus 147 ~~~~g~---------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~ 217 (286)
T 1q7f_A 147 FDQNGN---------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN 217 (286)
T ss_dssp ECTTSC---------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTT
T ss_pred EcCCCC---------EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCC
Confidence 996542 22111112445568899998 456666677899999999888887775442 125889999999
Q ss_pred CCEEEEEeCCC-CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec
Q 001391 360 SSLLVTAGFDS-AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1088)
Q Consensus 360 g~~l~tg~~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~ 438 (1088)
|+++++...++ .|.+|+.+++.+..+. .. .....+..+++.|++.++++..
T Consensus 218 G~l~v~~~~~~~~i~~~~~~g~~~~~~~------------------~~----------~~~~~~~~i~~~~~g~l~vs~~ 269 (286)
T 1q7f_A 218 GEILIADNHNNFNLTIFTQDGQLISALE------------------SK----------VKHAQCFDVALMDDGSVVLASK 269 (286)
T ss_dssp CCEEEEECSSSCEEEEECTTSCEEEEEE------------------ES----------SCCSCEEEEEEETTTEEEEEET
T ss_pred CCEEEEeCCCCEEEEEECCCCCEEEEEc------------------cc----------CCCCcceeEEECCCCcEEEECC
Confidence 99888888776 9999997543222111 00 1112467899999999998887
Q ss_pred CCeEEEEEe
Q 001391 439 HGYLYHTKL 447 (1088)
Q Consensus 439 ~g~i~~~~~ 447 (1088)
++.|..|++
T Consensus 270 ~~~v~v~~~ 278 (286)
T 1q7f_A 270 DYRLYIYRY 278 (286)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEEc
Confidence 777876654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-11 Score=149.96 Aligned_cols=283 Identities=10% Similarity=-0.003 Sum_probs=178.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEE--e-CCeEEEEECCCCeeEEEEeeeCCcceE---------EEEecccccccCCC
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAG--S-GSQVLLYDLEAGTLIRPFQVFHGIRLH---------GISCNFINCTEGSV 83 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag--~-d~~I~vwd~~tg~~~~~~~~~~~~~V~---------~i~~s~~~~~~~~d 83 (1088)
|...|..++|+ ++ +.+++.. . ++...||....+.....+..+.. .+. ...|+.. ||
T Consensus 22 ~~~~~~~~~~s--~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~S-----PD 89 (662)
T 3azo_A 22 RSGRPACVGAV--GD----EVWWVAPRPAEAGRATLVRRRADGAEESALPAPW-NVRNRVFEYSGFPWAGVPR-----PA 89 (662)
T ss_dssp TCSCCEEEEEE--TT----EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTC-CBCCCGGGTCCCCEEEECC-----SS
T ss_pred cCCccceeEEc--CC----eEEEEecCcccCCcEEEEEECCCCCcceeCCCCc-cccccccccCCccceeeee-----cC
Confidence 45678999999 77 5555655 3 57899999655544555554332 344 3434311 77
Q ss_pred ccceeeE-EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-----CCCcEEEEEEecccCCCCEEEEEEcC-
Q 001391 84 STRVTFE-VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-----LSHWVFDVCFLKVCNGNRSLAIGCSD- 156 (1088)
Q Consensus 84 ~~~~~~~-la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~I~~v~f~p~~~d~~~lasgs~D- 156 (1088)
| .. |+.+.++..+||.++.... + ......+.. |...+.+++|+| ||+.|+.++.|
T Consensus 90 g----~~~la~~~~~~~~l~~~~~~~~-g----------~~~~~~l~~~~~~~~~~~~~~~~~sp---Dg~~l~~~~~~~ 151 (662)
T 3azo_A 90 G----GPLLVFTHFGDQRLYAFEPDAP-G----------GAVPRPLTPVSAVGGGLRWADPVLLP---ERGEVWCMAEEF 151 (662)
T ss_dssp S----SCEEEEEBTTTCCEEEECTTST-T----------CCCCEECSCCCCSTTCEEEEEEEEET---TTTEEEEEEEEE
T ss_pred C----CeEEEEEECCCCeEEEEcCCCC-C----------CCCCEeccCCccCCCCccccCcEECC---CCCEEEEEEecc
Confidence 7 44 6666655555666553200 0 011222333 677899999999 99999998877
Q ss_pred ---------CcEEEEEcCC------CceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecC--------CeEEEEEecc
Q 001391 157 ---------NSIRVWDISN------SSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIY--------NEIIVWKVDW 212 (1088)
Q Consensus 157 ---------g~V~iWd~~~------~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~d--------g~I~vwd~~~ 212 (1088)
..|++||+.+ ++. ..+. .+. ....++.+ +|||..|+..+.+ ..|.+||+..
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~---SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH-RFVTGPRL---SPDGRQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS-SEECCCEE---CTTSSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC-CcccCceE---CCCCCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 5899999987 544 3333 222 22333343 7999999877755 3799999870
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccce---eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcCC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA---VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR--SARIWEVRA 287 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg--~v~iWd~~~ 287 (1088)
++ .......+|...+..++|+|||++++++..++ .|.+||+.+
T Consensus 227 --------------------------------~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 227 --------------------------------DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp --------------------------------TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred --------------------------------CCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 12 33333445678999999999999888888888 455555544
Q ss_pred CcccCCCCceeeeceeeeccCcc--------eEEEEEC--CCEEEEEeCCCcEEEE--cCCCceeEEEcccCCCCeEEE-
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNAR--------VWDCCLT--DSFIITAGEDCTCRVW--GSDGKQLKMIKEHIGRGIWRC- 354 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~--------I~~v~~~--~~~l~sg~~Dg~i~vW--d~~~~~~~~~~~h~~~~V~~l- 354 (1088)
++. +. ...++... +..++|+ +.+++++.. +.+++| |..+..+..+..|.+ .+..+
T Consensus 275 ~~~------~~----l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~ 342 (662)
T 3azo_A 275 GAA------TQ----LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWT-EWAATL 342 (662)
T ss_dssp CCE------EE----SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCC-EEEEEE
T ss_pred Cce------ee----cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCC-eEEEEE
Confidence 322 11 11122111 4567886 578888888 999999 555566788887766 57776
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEc
Q 001391 355 LYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 355 ~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++.+.-++++++.+....+|.+
T Consensus 343 s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 343 TVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEETTEEEEEEEETTEEEEEEEE
T ss_pred ecCCCEEEEEEcCCCCCCEEEEE
Confidence 55544445555666665556544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-11 Score=135.64 Aligned_cols=245 Identities=11% Similarity=0.064 Sum_probs=169.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCC-------------------------eEEEEECCCCeeEEEEeeeCCcceEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGS-------------------------QVLLYDLEAGTLIRPFQVFHGIRLHG 70 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~-------------------------~I~vwd~~tg~~~~~~~~~~~~~V~~ 70 (1088)
..+.|.+|+++ |+ ++++++..+. +|.+||..+|+.+..+....-....+
T Consensus 22 ~l~~v~~va~d--~~----G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 22 LPGQVSGVALD--SK----NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHG 95 (329)
T ss_dssp CCSCEEEEEEC--TT----CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEE
T ss_pred ecCCceEEEEC--CC----CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceE
Confidence 45789999999 98 8888887743 79999999999877665333346899
Q ss_pred EEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeec---------cCCCCcEEEEEE
Q 001391 71 ISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL---------PRLSHWVFDVCF 140 (1088)
Q Consensus 71 i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l---------~~h~~~I~~v~f 140 (1088)
++++ ++| .++++ .+++.|++|+..... ..+..+ .++-.....+++
T Consensus 96 ia~d-------~~g----~l~v~d~~~~~v~~~~~~g~~--------------~~~~~~~~~~~~g~~~~~~~~P~~ia~ 150 (329)
T 3fvz_A 96 LSID-------TDG----NYWVTDVALHQVFKLDPHSKE--------------GPLLILGRSMQPGSDQNHFCQPTDVAV 150 (329)
T ss_dssp EEEC-------TTS----CEEEEETTTTEEEEECTTCSS--------------CCSEEESBTTBCCCSTTCCSSEEEEEE
T ss_pred EEEC-------CCC----CEEEEECCCCEEEEEeCCCCe--------------EEEEEecccCCCCCCccccCCCcEEEE
Confidence 9999 777 44444 457999999976321 112222 345567899999
Q ss_pred ecccCCCCEEEEEE-cCCcEEEEEcCCCceEEEeccCC---------ceeEEEEeeecCCCC-CcEEEEEecCCeEEEEE
Q 001391 141 LKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE---------RCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 141 ~p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~---------~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd 209 (1088)
+| .++.++++.+ .++.|++|+ .+++.+..+.... ......+++ +++ +.++++...++.|++|+
T Consensus 151 ~~--~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~---d~~~g~l~v~d~~~~~I~~~~ 224 (329)
T 3fvz_A 151 EP--STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL---VPHLDQLCVADRENGRIQCFK 224 (329)
T ss_dssp CT--TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE---ETTTTEEEEEETTTTEEEEEE
T ss_pred eC--CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE---ECCCCEEEEEECCCCEEEEEE
Confidence 98 1355666665 689999999 5666666654211 112445555 466 77788888899999999
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE--eCCCCCEEEEEEcC------CCCEEEEEECCCcEE
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSS------CGSKLVSVSDDRSAR 281 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~v~~sp------~g~~l~s~s~Dg~v~ 281 (1088)
.. +++.+..+ .++...+.+++|+| ++...++.+.+..|+
T Consensus 225 ~~---------------------------------~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 225 TD---------------------------------TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp TT---------------------------------TCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEE
T ss_pred CC---------------------------------CCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEE
Confidence 87 45555555 35667889999999 333333333455899
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCC
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~ 337 (1088)
+|+..+++. ...+. ...++...+..++++ +.++++...++.|++|++++
T Consensus 272 ~~~~~~g~~-----~~~~~--~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 272 VMNFSSGEI-----IDVFK--PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEETTTCCE-----EEEEC--CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEcCCCeE-----EEEEc--CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999988643 11111 113566778999998 55778888899999999844
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-10 Score=124.96 Aligned_cols=266 Identities=8% Similarity=-0.051 Sum_probs=180.1
Q ss_pred CCCCceEEecCCCceee-------------eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcc
Q 001391 2 GKKDLSEWRLDVGQYLG-------------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIR 67 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~~-------------~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~ 67 (1088)
++++|.++|..+++... ....+++. .+ ++.++.. ++.|.+||..+++.+.++... ..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~-----~lyv~~~~~~~v~viD~~t~~~~~~i~~~--~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DG-----IGWIVVNNSHVIFAIDINTFKEVGRITGF--TS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TT-----EEEEEEGGGTEEEEEETTTCCEEEEEECC--SS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CC-----EEEEEEcCCCEEEEEECcccEEEEEcCCC--CC
Confidence 47899999999987332 24567777 43 4444444 599999999999999988643 35
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC-----CCcEEEEEEe
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-----SHWVFDVCFL 141 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~I~~v~f~ 141 (1088)
..+++++ +++ .+.++. .++.|.+||..+. +....+... ......+++
T Consensus 86 p~~i~~~-------~~g----~lyv~~~~~~~v~~iD~~t~---------------~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 86 PRYIHFL-------SDE----KAYVTQIWDYRIFIINPKTY---------------EITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp EEEEEEE-------ETT----EEEEEEBSCSEEEEEETTTT---------------EEEEEEECTTCCTTTCBCCCEEE-
T ss_pred CcEEEEe-------CCC----eEEEEECCCCeEEEEECCCC---------------eEEEEEEcCCccccCCCcceEEE-
Confidence 8999998 666 555555 6899999998753 233322211 124566777
Q ss_pred cccCCCCEEEEEE-cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC----------CeEEEEEe
Q 001391 142 KVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----------NEIIVWKV 210 (1088)
Q Consensus 142 p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d----------g~I~vwd~ 210 (1088)
. ++.++++.. .++.|.++|+.+++.+.++...... ..+.+ ++++.++++...+ +.|.++|.
T Consensus 139 ~---~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p--~~i~~---~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 139 Y---GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP--TSLVM---DKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp E---TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB--CCCEE---CTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred E---CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc--cceEE---cCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 4 555555544 4899999999999888777543221 22333 5778776666544 78999998
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
. +.+....+.-. ......++|+|+++++..+.. .|.+||..+++
T Consensus 211 ~---------------------------------t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 211 E---------------------------------TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp T---------------------------------TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred C---------------------------------CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 7 44444444422 246899999999999887755 89999998764
Q ss_pred ccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEE----eCCCcEEEEcCCCceeEEEcccCCCCeEEEEE
Q 001391 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA----GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 290 ~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg----~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
. . ... ....+......++++ +.++++. ..++.|.+||.+|+.+.++..-. .-..++|
T Consensus 256 ~-----~-~~~--~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~--~P~~~~~ 319 (328)
T 3dsm_A 256 V-----P-VRP--FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGI--IPGAFCW 319 (328)
T ss_dssp C-----C-SSC--SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEE--SEEEEEE
T ss_pred e-----e-eee--eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEecc--CcceEEE
Confidence 3 1 000 111124568889996 3455665 57899999999998888876433 3456665
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-10 Score=125.41 Aligned_cols=238 Identities=9% Similarity=0.090 Sum_probs=165.5
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC-C------------------------CEEEEEEeccCCCCCCCCCCccccc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-E------------------------KRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d------------------------~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.+.+++++ ++| .++++.. + ++|.+||..+.
T Consensus 25 ~v~~va~d-------~~G----~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-------------- 79 (329)
T 3fvz_A 25 QVSGVALD-------SKN----NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-------------- 79 (329)
T ss_dssp CEEEEEEC-------TTC----CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------------
T ss_pred CceEEEEC-------CCC----CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------------
Confidence 58999999 777 4555544 4 26888887642
Q ss_pred cceeeec-cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-eEEEecc--------CCceeEEEEeeecCCC
Q 001391 122 LSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHS--------PERCLLYSMKLWGDNL 191 (1088)
Q Consensus 122 ~~~~~~l-~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-~~~~~~~--------~~~~~~~s~~~~~~s~ 191 (1088)
+.+..+ .++-.....++++| +++++++...++.|++||..... .+..+.. ........+++ ++
T Consensus 80 -~~~~~~~~~~~~~p~gia~d~---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~---~~ 152 (329)
T 3fvz_A 80 -EILQSSGKNLFYLPHGLSIDT---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV---EP 152 (329)
T ss_dssp -CEEEEECTTTCSSEEEEEECT---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE---CT
T ss_pred -eEEeccCCCccCCceEEEECC---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE---eC
Confidence 223333 24556799999999 99988888889999999986542 4444431 11123445655 56
Q ss_pred -CCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe----------CCCCCE
Q 001391 192 -EALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----------GHEGSI 259 (1088)
Q Consensus 192 -~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----------gh~~~V 259 (1088)
++.++++.+ .++.|++|+.. +..+..+. ++-...
T Consensus 153 ~~g~lyv~d~~~~~~I~~~~~~----------------------------------g~~~~~~~~~g~~~~~~~~~~~~p 198 (329)
T 3fvz_A 153 STGAVFVSDGYCNSRIVQFSPS----------------------------------GKFVTQWGEESSGSSPRPGQFSVP 198 (329)
T ss_dssp TTCCEEEEECSSCCEEEEECTT----------------------------------SCEEEEECEECCSSSCCTTEESCE
T ss_pred CCCeEEEEeCCCCCeEEEEcCC----------------------------------CCEEEEeccCCCCCCCCCcccCCC
Confidence 677888876 68999999954 22333332 233458
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEE--------eCCCcE
Q 001391 260 FRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA--------GEDCTC 330 (1088)
Q Consensus 260 ~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg--------~~Dg~i 330 (1088)
.+|+++|+ +..+++...++.|++|+..+++. +..+...++...+..+++++..++.. ..+.++
T Consensus 199 ~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--------~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v 270 (329)
T 3fvz_A 199 HSLALVPHLDQLCVADRENGRIQCFKTDTKEF--------VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQG 270 (329)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCE--------EEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCE
T ss_pred cEEEEECCCCEEEEEECCCCEEEEEECCCCcE--------EEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEE
Confidence 99999998 67777888899999999986532 22112235566778888875443333 234589
Q ss_pred EEEcC-CCceeEEEc---ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 331 RVWGS-DGKQLKMIK---EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~---~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
++|+. +++.+..+. .+.. ....++++|+|.++++...++.|++|++.+
T Consensus 271 ~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 271 FVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 99998 888888874 4444 589999999998888888999999999854
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-10 Score=132.05 Aligned_cols=258 Identities=9% Similarity=-0.105 Sum_probs=152.4
Q ss_pred EEEEECCCCeeEEEEeeeCCc----ceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCcc
Q 001391 46 VLLYDLEAGTLIRPFQVFHGI----RLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPET 118 (1088)
Q Consensus 46 I~vwd~~tg~~~~~~~~~~~~----~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~ 118 (1088)
....|..+|+.+..+..+... .+..++|| |||+ .++.+.. +..|.+|++....
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~S-------pdG~---~l~~~~~~~g~~~l~~~d~~~~~---------- 71 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFT-------QDGK---KLLFAGDFDGNRNYYLLNLETQQ---------- 71 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBC-------TTSC---EEEEEECTTSSCEEEEEETTTTE----------
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCC-------CCCC---EEEEEEecCCCceEEEEECCCCc----------
Confidence 445688888877776643221 25677888 8883 3333433 2467777776422
Q ss_pred ccccceeeeccCCCCc-EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE--EEEee---------
Q 001391 119 CVNLSLVQSLPRLSHW-VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL--YSMKL--------- 186 (1088)
Q Consensus 119 ~~~~~~~~~l~~h~~~-I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~--~s~~~--------- 186 (1088)
. ..+..+... ...+.|+| |++.|+.++.++.|.+||+.+++.......+..-.. ..+.+
T Consensus 72 -----~-~~l~~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 142 (396)
T 3c5m_A 72 -----A-VQLTEGKGDNTFGGFIST---DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGI 142 (396)
T ss_dssp -----E-EECCCSSCBCTTTCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEE
T ss_pred -----E-EEeecCCCCccccceECC---CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccc
Confidence 2 222223333 33478999 999999999999999999998876544443322100 00111
Q ss_pred ----ecCCCCCcEEEEE-----ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 187 ----WGDNLEALRIASG-----TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 187 ----~~~s~~~~~l~sg-----~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
...+|++..++.. ..+..|.+||+. +++.. .+..+..
T Consensus 143 ~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~---------------------------------~g~~~-~~~~~~~ 188 (396)
T 3c5m_A 143 EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE---------------------------------TGELE-VIHQDTA 188 (396)
T ss_dssp EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT---------------------------------TCCEE-EEEEESS
T ss_pred cccccccCCCCcceeeeeeccCCCcceEEEEECC---------------------------------CCcEE-eeccCCc
Confidence 1123333333322 234455556654 33322 3335677
Q ss_pred CEEEEEEcC-CCCEEEEEECC------CcEEEEEcCCCcccCCCCceeeeceeeecc--CcceEEEEEC--CCEEEEEeC
Q 001391 258 SIFRIEWSS-CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLT--DSFIITAGE 326 (1088)
Q Consensus 258 ~V~~v~~sp-~g~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h--~~~I~~v~~~--~~~l~sg~~ 326 (1088)
.+..+.|+| +++.|+.++.+ ..|.+||+..+.. . .+..+ ...+..++|+ +..|+.++.
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~-----~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV------R-----KIKEHAEGESCTHEFWIPDGSAMAYVSY 257 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC------E-----ESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce------e-----EeeccCCCccccceEECCCCCEEEEEec
Confidence 899999999 78877776654 3588888766432 1 22222 3357788998 455666554
Q ss_pred C-----CcEEEEcCCCceeEEEcccCCCCeEEEEEcC-CCCEEEEEe----------------CCCCEEEEEcCCC
Q 001391 327 D-----CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAG----------------FDSAIKVHQFQAF 380 (1088)
Q Consensus 327 D-----g~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~-dg~~l~tg~----------------~Dg~I~iwd~~~~ 380 (1088)
+ +.|++||+.+.....+....+ .. +.|+| +|++++.++ .++.|.+||+.+.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 258 FKGQTDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ETTTCCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred CCCCccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 3 449999994333333332222 33 88999 999888765 3467889998653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-09 Score=113.28 Aligned_cols=287 Identities=8% Similarity=-0.054 Sum_probs=187.5
Q ss_pred CCCceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEee-eCCcceEEEEeccccccc
Q 001391 3 KKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~-~~~~~V~~i~~s~~~~~~ 80 (1088)
++.+..|.+... ...+.++++. |+ +++.++.. ++.|.+||.. ++.. .+.. .....++++++.
T Consensus 2 ~g~~~~~~~~~~--~~~~~~i~~d--~~----g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~------ 65 (299)
T 2z2n_A 2 EFKLQELNLTNQ--DTGPYGITVS--DK----GKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTIS------ 65 (299)
T ss_dssp CEEEEEEECCSS--SCCEEEEEEC--TT----SCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEEC------
T ss_pred cceEEEEcCCCc--CCCccceEEC--CC----CCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEEC------
Confidence 455666766543 2568999999 88 78777766 5899999988 5543 3332 133468999998
Q ss_pred CCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
+++ .+.++. +++.|..|+... . .+.. .+......+.++++.| ++.+.++...++.|
T Consensus 66 -~~g----~l~v~~~~~~~i~~~~~~g-~-------------~~~~-~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i 122 (299)
T 2z2n_A 66 -SDG----EVWFTENAANKIGRITKKG-I-------------IKEY-TLPNPDSAPYGITEGP---NGDIWFTEMNGNRI 122 (299)
T ss_dssp -TTS----CEEEEETTTTEEEEECTTS-C-------------EEEE-ECSSTTCCEEEEEECT---TSCEEEEETTTTEE
T ss_pred -CCC----CEEEeCCCCCeEEEECCCC-c-------------EEEE-eCCCcCCCceeeEECC---CCCEEEEecCCceE
Confidence 776 455544 478898888651 1 1111 1223456789999998 88887777678899
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
..||. +++...............+.+ ++++.+.++...++.|..||.. +
T Consensus 123 ~~~d~-~g~~~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~-g-------------------------- 171 (299)
T 2z2n_A 123 GRITD-DGKIREYELPNKGSYPSFITL---GSDNALWFTENQNNAIGRITES-G-------------------------- 171 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-C--------------------------
T ss_pred EEECC-CCCEEEecCCCCCCCCceEEE---cCCCCEEEEeCCCCEEEEEcCC-C--------------------------
Confidence 99998 555433222212233445554 5677777777667888888863 1
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
.........+...+.++++++++...++...++.|..||. +++. .. +....+...+.++++.
T Consensus 172 ------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 172 ------DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI------TE---FKIPTPNARPHAITAGAG 235 (299)
T ss_dssp ------CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EECSSTTCCEEEEEECST
T ss_pred ------cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE------EE---EECCCCCCCceeEEECCC
Confidence 1111112334566889999999998777777889999998 5322 11 1233455678899997
Q ss_pred CCEEEEEeCCCcEEEEcCCCceeEEE--cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 318 DSFIITAGEDCTCRVWGSDGKQLKMI--KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~~~~~~~~--~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+.+.++...++.|.+|+.+++ +..+ ..+.. .+.++++ +++.+.++.. .+.+..++.+.
T Consensus 236 g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~-~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTSNNI-IEEYPIQIKSA-EPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp TCEEEEETTTTEEEEEETTTE-EEEEECSSSSC-CEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCEEEeccCCceEEEECCCCc-eEEEeCCCCCC-ccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 455555557789999998664 3333 23334 5899999 8888766655 56677777643
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=138.77 Aligned_cols=271 Identities=13% Similarity=0.007 Sum_probs=163.4
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeC----CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSG----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d----~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
+..++|+ || +++|+...+ ..|.+||+.+++...... ........+.|+ |||+ .++.+..
T Consensus 38 ~~~~~~S--pd----G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~s-------pdg~---~l~~~~~ 100 (396)
T 3c5m_A 38 FYQKCFT--QD----GKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFIS-------TDER---AFFYVKN 100 (396)
T ss_dssp TTSCCBC--TT----SCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEEC-------TTSS---EEEEEET
T ss_pred eecCcCC--CC----CCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceEC-------CCCC---EEEEEEc
Confidence 6778999 99 888877652 479999999887644332 222223347788 8883 4555566
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE-------------------EEEecccCCCCEEEEE---
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD-------------------VCFLKVCNGNRSLAIG--- 153 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~-------------------v~f~p~~~d~~~lasg--- 153 (1088)
++.|.+|++.... .+.+ ...+..+... ++++| +++.++.+
T Consensus 101 ~~~l~~~d~~~~~-------------~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp---dg~~~~~~~~~ 162 (396)
T 3c5m_A 101 ELNLMKVDLETLE-------------EQVI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP---LTSWEKFAEFY 162 (396)
T ss_dssp TTEEEEEETTTCC-------------EEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC---CCSHHHHHHHH
T ss_pred CCcEEEEECCCCC-------------cEEE--EecccccCCCCCEEEeccCCccccccccccccCC---CCcceeeeeec
Confidence 7889999987532 1122 2223333333 34566 77766543
Q ss_pred --EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-CCcEEEEEecC------CeEEEEEeccCccccCCCCCCC
Q 001391 154 --CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 154 --s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d------g~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
..+..|.+||+.+++......... .+..+.+ +| ++..|+..+.+ ..|.+|++.
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~---sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------------- 224 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIHQDTA--WLGHPIY---RPFDDSTVGFCHEGPHDLVDARMWLVNED------------- 224 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEEEESS--CEEEEEE---ETTEEEEEEEEECSCSSSCSCCCEEEETT-------------
T ss_pred cCCCcceEEEEECCCCcEEeeccCCc--ccccceE---CCCCCCEEEEEecCCCCCCCceEEEEECC-------------
Confidence 356789999999887654443221 2334444 46 66666655433 357777765
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCC--CCCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCcccCCCCce
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH--EGSIFRIEWSSCGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh--~~~V~~v~~sp~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~ 297 (1088)
... ...+..+ ...+..++|+|+|++|+.++.+ +.|++||+.+++. .
T Consensus 225 --------------------~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~ 277 (396)
T 3c5m_A 225 --------------------GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN------E 277 (396)
T ss_dssp --------------------SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE------E
T ss_pred --------------------CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe------E
Confidence 111 1122222 2357889999999988777554 4599999987543 2
Q ss_pred eeeceeeeccCcceEEEEEC---CCEEEEEe----------------CCCcEEEEcCCCceeEEEcccCCC---------
Q 001391 298 EVGSSVLYGHNARVWDCCLT---DSFIITAG----------------EDCTCRVWGSDGKQLKMIKEHIGR--------- 349 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~---~~~l~sg~----------------~Dg~i~vWd~~~~~~~~~~~h~~~--------- 349 (1088)
.+. ...+ .. +.|+ +.+++.++ .+..|++||+.+.....+..+...
T Consensus 278 ~l~--~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 278 EVM--VMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp EEE--ECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred Eee--eCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 221 1112 12 5564 45666654 347899999944334455444431
Q ss_pred -CeEEEEEcCCCCEEEEEeC-CCCEEEEEc
Q 001391 350 -GIWRCLYDSLSSLLVTAGF-DSAIKVHQF 377 (1088)
Q Consensus 350 -~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~ 377 (1088)
.+..++|+|+|+.|+.++. ++...+|.+
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1456789999998876664 666677765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-10 Score=126.69 Aligned_cols=248 Identities=7% Similarity=0.038 Sum_probs=159.2
Q ss_pred CCCceEEecCCCc--eeeeeEEEEEeccCCCCCCCCEEEEEeC----C--eEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 3 KKDLSEWRLDVGQ--YLGEISALCFVHLPSHLSSLPFLLAGSG----S--QVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 3 d~~i~iWdl~~g~--~~~~V~~v~fs~~pd~~~~~~~laag~d----~--~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
++.|.+||+.+++ ....+..++|| || +++|+.... + .|.+||+.+++....... .. +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l~~~~~~~~S--pD----g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~--~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIENATMPRIS--PD----GKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN--IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEEESCEEEEEC--TT----SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE--EEEEEEC
T ss_pred cceEEEEeCCCCceEEcccCCCeEEC--CC----CCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC--ccceeEC
Confidence 4568999999886 33678889999 99 888887652 2 488889988876554443 32 8999999
Q ss_pred ccccccCCCccceeeEEEEEC---------------------------CCEEEEEEeccCCCCCCCCCCccccccceeee
Q 001391 75 FINCTEGSVSTRVTFEVALFG---------------------------EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g---------------------------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (1088)
|||+ .++.++. ...|.+|++.... .+..
T Consensus 113 -------pdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~---------------~~~~ 167 (347)
T 2gop_A 113 -------EDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE---------------VIEE 167 (347)
T ss_dssp -------TTSS---EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE---------------EEEE
T ss_pred -------CCCC---EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe---------------EEee
Confidence 8873 3444332 2467778876432 2122
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCC-------cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-------SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg-------~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
+.. . .+..++|+| |+ +++++..++ ...||.+.+++ ...+..+ ....+. +|++..|+.++
T Consensus 168 l~~-~-~~~~~~~sp---dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~--~~~~~~-----spdg~~l~~~~ 233 (347)
T 2gop_A 168 FEK-P-RFSSGIWHR---DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK--VSFYAV-----DSDGERILLYG 233 (347)
T ss_dssp EEE-E-TTCEEEEET---TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE--ESEEEE-----EECSSCEEEEE
T ss_pred ecC-C-CcccccCCC---Ce-EEEEEecccccccccccccEEEeCCCc-eEEeccC--cceeeE-----CCCCCEEEEEE
Confidence 222 2 688999999 99 887776542 44555555443 3333322 122222 57888777766
Q ss_pred cC--------CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEE-EEEcCCCCEE
Q 001391 201 IY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-IEWSSCGSKL 271 (1088)
Q Consensus 201 ~d--------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-v~~sp~g~~l 271 (1088)
.+ ..|.+|| . ++......+|...+.. +.|+ ++ .+
T Consensus 234 ~~~~~~~~~~~~l~~~d-~----------------------------------~~~~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD-G----------------------------------KEVMGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp CCSSSCCCSSCEEEEEC-S----------------------------------SCEEESSTTCCSEEEEEEEET-TE-EE
T ss_pred ccccCCccccceEEEEC-C----------------------------------CceEeccccCCcccCCccEEc-Cc-EE
Confidence 43 3566666 3 1122223456677886 9999 88 88
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcE-EEEcCCCceeEEEcccCC
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTC-RVWGSDGKQLKMIKEHIG 348 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i-~vWd~~~~~~~~~~~h~~ 348 (1088)
++++.++.++|| +.+++ .. .+..+...|.+++|++.++++++.++.. .+|.+++ ....+..|..
T Consensus 277 ~~~~~~~~~~l~-~~~g~--------~~---~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~g-~~~~lt~~n~ 341 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGE--------IK---PIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDG-EEKQLTDYND 341 (347)
T ss_dssp EEEEETTEEEEE-EESSS--------EE---EEECSSSEEEEEEESSSEEEEEECSSSCCEEEEESS-SEEECCCTTS
T ss_pred EEEecCCcEEEE-EcCCc--------eE---EEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeCC-cEEEeccccH
Confidence 999999999999 87432 21 3444577889999988566677777654 6666553 3455555543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-10 Score=125.58 Aligned_cols=271 Identities=11% Similarity=0.024 Sum_probs=173.3
Q ss_pred eeeEEEEEeccCCCCCCCCEEEE-EeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-C
Q 001391 18 GEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G 95 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laa-g~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g 95 (1088)
..|.+++|+ |+ ...++. +.++.++.| .++....+..+.. .+.+++|+ +++ .++++. .
T Consensus 6 ~~~~~~~~~--~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~-------~~g----~l~~~~~~ 64 (333)
T 2dg1_A 6 QDLPTLFYS--GK----SNSAVPIISESELQTI---TAEPWLEISKKGL-QLEGLNFD-------RQG----QLFLLDVF 64 (333)
T ss_dssp CCCCBCCSC--GG----GGCSSCCCCGGGSCEE---ECEEEEEEESSCC-CEEEEEEC-------TTS----CEEEEETT
T ss_pred cccceeeec--CC----ccceeEEeecccCccc---ccceeEEEeccCc-cccCcEEC-------CCC----CEEEEECC
Confidence 457788898 77 444444 446889999 4566666665444 57999998 777 555544 4
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC----CcEEEEEcCCCceEE
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRVWDISNSSIIL 171 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D----g~V~iWd~~~~~~~~ 171 (1088)
++.|.+|+.+... .......+...+.+++++| +++++++...+ +.|.+||..++....
T Consensus 65 ~~~i~~~d~~~~~---------------~~~~~~~~~~~~~~i~~~~---dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 65 EGNIFKINPETKE---------------IKRPFVSHKANPAAIKIHK---DGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp TCEEEEECTTTCC---------------EEEEEECSSSSEEEEEECT---TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred CCEEEEEeCCCCc---------------EEEEeeCCCCCcceEEECC---CCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 7899999876432 2222224567899999999 99887777666 689999998876653
Q ss_pred Eecc-CCceeEEEEeeecCCCCCcEEEEEec------CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccc
Q 001391 172 EVHS-PERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1088)
Q Consensus 172 ~~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~------dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 244 (1088)
.+.. ........+.+ ++++.++++... .+.|..++..
T Consensus 127 ~~~~~~~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~l~~~~~~--------------------------------- 170 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVF---DSKGGFYFTDFRGYSTNPLGGVYYVSPD--------------------------------- 170 (333)
T ss_dssp EECSSSSCCCEEEEEE---CTTSCEEEEECCCBTTBCCEEEEEECTT---------------------------------
T ss_pred EEccCccCCcccceEE---CCCCCEEEEeccccccCCCceEEEEeCC---------------------------------
Confidence 3321 12233455555 567777766543 2334444433
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCC-cccCCCCceeeec---eeeeccCcceEEEEEC--
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAE-YWKDSDSIEEVGS---SVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~-~~~~~~~~~~i~~---~~~~~h~~~I~~v~~~-- 317 (1088)
..+ +..+..+...+..++|+|+++.+ ++.+.++.|.+|++.+. .. ...+.. ....++ ..+..++++
T Consensus 171 ~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-----~~~~~~~~~~~~~~~-~~~~~i~~d~~ 243 (333)
T 2dg1_A 171 FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-----IQPFGATIPYYFTGH-EGPDSCCIDSD 243 (333)
T ss_dssp SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-----EEEEEEEEEEECCSS-SEEEEEEEBTT
T ss_pred CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-----cccccceEEEecCCC-CCCCceEECCC
Confidence 111 22222334568899999999865 45556789999998642 11 111110 011222 457788887
Q ss_pred CCEEEEEeCCCcEEEEcCCCceeEEEcccCC-----CCeEEEEEcCCCCEEEEEeCCC
Q 001391 318 DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG-----RGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~-----~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+.++++...++.|.+|+.+++.+..+..+.. ..+.+++|+|++..|+.++.++
T Consensus 244 G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 244 DNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 5677777778999999998887777754432 0378999999987776665553
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-10 Score=144.84 Aligned_cols=268 Identities=10% Similarity=-0.017 Sum_probs=156.6
Q ss_pred CCCCceEEecCCCc-------eeeeeE---------EEEE--eccCCCCCCCCE-EEEEeC--CeEEEEECC--C-CeeE
Q 001391 2 GKKDLSEWRLDVGQ-------YLGEIS---------ALCF--VHLPSHLSSLPF-LLAGSG--SQVLLYDLE--A-GTLI 57 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-------~~~~V~---------~v~f--s~~pd~~~~~~~-laag~d--~~I~vwd~~--t-g~~~ 57 (1088)
+|+...||....+. +...|. +..| | || +++ |+.+.+ ..|.+|++. + ++ .
T Consensus 45 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~S--PD----g~~~la~~~~~~~~l~~~~~~~~g~~~-~ 117 (662)
T 3azo_A 45 EAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPR--PA----GGPLLVFTHFGDQRLYAFEPDAPGGAV-P 117 (662)
T ss_dssp TTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECC--SS----SSCEEEEEBTTTCCEEEECTTSTTCCC-C
T ss_pred cCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeee--cC----CCeEEEEEECCCCeEEEEcCCCCCCCC-C
Confidence 46678899854332 112333 3333 5 78 777 777664 567777765 2 43 3
Q ss_pred EEEeee----CCcceEEEEecccccccCCCccceeeEEEEECC----------CEEEEEEeccCCCCCCCCCCccccccc
Q 001391 58 RPFQVF----HGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----------KRVKLFELNFELSPNSQYQPETCVNLS 123 (1088)
Q Consensus 58 ~~~~~~----~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd----------~~v~iw~l~~~~~~~~~~~~~~~~~~~ 123 (1088)
..+... +...+..++|| |||+ .++.+..+ ..|.+|++...... ...
T Consensus 118 ~~l~~~~~~~~~~~~~~~~~s-------pDg~---~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~ 177 (662)
T 3azo_A 118 RPLTPVSAVGGGLRWADPVLL-------PERG---EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA----------DRS 177 (662)
T ss_dssp EECSCCCCSTTCEEEEEEEEE-------TTTT---EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT----------CGG
T ss_pred EeccCCccCCCCccccCcEEC-------CCCC---EEEEEEecccCCCCCCceeEEEEEECCCCccc----------cCC
Confidence 444432 34468899999 8883 44444444 57889988741000 001
Q ss_pred eeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCC--------cEEEEEcC-CCc--eEEEeccCCceeEEEEeeecCCC
Q 001391 124 LVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDN--------SIRVWDIS-NSS--IILEVHSPERCLLYSMKLWGDNL 191 (1088)
Q Consensus 124 ~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg--------~V~iWd~~-~~~--~~~~~~~~~~~~~~s~~~~~~s~ 191 (1088)
....+. .+...+..++|+| ||++|+.++.++ .|.+||+. ++. ....+.........++.+ ++
T Consensus 178 ~~~~l~~~~~~~~~~~~~Sp---DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~---sp 251 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSP---DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW---AP 251 (662)
T ss_dssp GSEESSCSCSSEECCCEECT---TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE---CT
T ss_pred ceeEEEecCCCcccCceECC---CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE---CC
Confidence 123344 5667889999999 999999887553 79999998 562 333333322233555655 67
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC--------EEEEE
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS--------IFRIE 263 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--------V~~v~ 263 (1088)
|+.+++++..++...||.+... .++......++... +..++
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~-------------------------------~~~~~~l~~~~~~~~~p~w~~~~~~~~ 300 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPA-------------------------------TGAATQLCRREEEFAGPLWTPGMRWFA 300 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTT-------------------------------TCCEEESSCCSSBSSCCCCSTTCCSEE
T ss_pred CCeEEEEECCCCCeEEEEEECC-------------------------------CCceeecccccccccCccccccCceEe
Confidence 8888888888885555544300 11111111122111 45789
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE-EECCC-EE-EEEeCCCc--EEEEcCCCc
Q 001391 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC-CLTDS-FI-ITAGEDCT--CRVWGSDGK 338 (1088)
Q Consensus 264 ~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v-~~~~~-~l-~sg~~Dg~--i~vWd~~~~ 338 (1088)
|+|+++++++++. +.++||.+.... ..+. .+..|...+..+ .+.+. ++ ++++.+.. +.+||+.+.
T Consensus 301 ~~~~~~~~~~~~~-~~~~l~~~d~~~-------~~~~--~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 301 PLANGLIAVVHGK-GAAVLGILDPES-------GELV--DAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp ECTTSCEEEEEBS-SSCEEEEEETTT-------TEEE--ECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EeCCCEEEEEEEc-CccEEEEEECCC-------CcEE--EecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9999999999999 999999544211 1122 556666777777 66654 33 34455544 555566444
Q ss_pred eeEEE
Q 001391 339 QLKMI 343 (1088)
Q Consensus 339 ~~~~~ 343 (1088)
....+
T Consensus 371 ~~~~l 375 (662)
T 3azo_A 371 RARTI 375 (662)
T ss_dssp CEEEE
T ss_pred ceEEe
Confidence 44444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-08 Score=120.14 Aligned_cols=273 Identities=10% Similarity=-0.009 Sum_probs=179.4
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
+.++++.. +++|.++|..+++++.++.... .++++.|+ |||+ .++++..++.|.+||+....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~S-------pDGr---~lyv~~~dg~V~viD~~~~t----- 229 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLS-------ASGR---YLFVIGRDGKVNMIDLWMKE----- 229 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEEC-------TTSC---EEEEEETTSEEEEEETTSSS-----
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEEC-------CCCC---EEEEEcCCCeEEEEECCCCC-----
Confidence 34444444 5999999999999999988633 58999999 8884 56666668999999985211
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEe----cccCCCCEEEEEEc-CCcEEEEEcCCCceEEEeccCC----------c
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFL----KVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPE----------R 178 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~----p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~----------~ 178 (1088)
.+.+..+.... ....++|+ | ||++++++.. +++|.++|..+.+.+..+.... .
T Consensus 230 --------~~~v~~i~~G~-~P~~ia~s~~~~p---DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~ 297 (567)
T 1qks_A 230 --------PTTVAEIKIGS-EARSIETSKMEGW---EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 297 (567)
T ss_dssp --------CCEEEEEECCS-EEEEEEECCSTTC---TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred --------CcEeEEEecCC-CCceeEEccccCC---CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence 34455554433 36799999 8 9998877654 6999999999999887765221 1
Q ss_pred eeEEEEeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 179 CLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
..+..+.. +++ ...+++-...|.|.++|.... ....+..+ ....
T Consensus 298 ~rva~i~~---s~~~~~~vv~~~~~g~v~~vd~~~~-------------------------------~~~~v~~i-~~~~ 342 (567)
T 1qks_A 298 PRVAAILA---SHYRPEFIVNVKETGKILLVDYTDL-------------------------------NNLKTTEI-SAER 342 (567)
T ss_dssp CCEEEEEE---CSSSSEEEEEETTTTEEEEEETTCS-------------------------------SEEEEEEE-ECCS
T ss_pred CceEEEEE---cCCCCEEEEEecCCCeEEEEecCCC-------------------------------ccceeeee-eccc
Confidence 11222322 233 345566667799999998610 11112222 2345
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeece-eeeccCcceEEEEEC---CCEEEEEe-CCCcEE
Q 001391 258 SIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVWDCCLT---DSFIITAG-EDCTCR 331 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~-~~~~h~~~I~~v~~~---~~~l~sg~-~Dg~i~ 331 (1088)
....+.|+|++++++++. .++.|.++|+.+++. ...+. . ....|.++-..+ ++ +...++.. .+++|.
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-----~~~i~-vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vs 415 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-----VAIED-TGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVA 415 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EEEEE-CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-----EEEEe-ccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEE
Confidence 577889999999887655 578999999998643 22221 1 122454332222 33 23445553 468999
Q ss_pred EEcC-C-------CceeEEEcccCCCCeEEEEEcCCCCEEEEEeC-------CCCEEEEEcCC
Q 001391 332 VWGS-D-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-------DSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~-------~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-------Dg~I~iwd~~~ 379 (1088)
++|. . .+.++++..... +-.-+..+|++++|.+... .++|.++|+.+
T Consensus 416 vid~~~~~~~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 416 LIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred EecCCCCCCccccCEEEEEEecCCC-CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 9998 3 356777765533 2235778999998888663 35999999854
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-09 Score=119.60 Aligned_cols=238 Identities=12% Similarity=0.099 Sum_probs=151.2
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-EC-C--CE--EEEEEeccCCCCCCCCCC
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FG-E--KR--VKLFELNFELSPNSQYQP 116 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~g-d--~~--v~iw~l~~~~~~~~~~~~ 116 (1088)
++.|.+||+.+++.. .+ ..+..++|| ||| ..|+. .. + +. |.+|++...
T Consensus 42 ~~~l~~~d~~~~~~~-~l-----~~~~~~~~S-------pDg----~~la~~~~~~~~~~~~l~~~~~~~g--------- 95 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI-----ENATMPRIS-------PDG----KKIAFMRANEEKKVSEIWVADLETL--------- 95 (347)
T ss_dssp EEEEEEEETTTCCEE-EE-----ESCEEEEEC-------TTS----SEEEEEEEETTTTEEEEEEEETTTT---------
T ss_pred cceEEEEeCCCCceE-Ec-----ccCCCeEEC-------CCC----CEEEEEEeccCCCcceEEEEECCCC---------
Confidence 468999999988753 23 258899999 888 44444 32 2 44 555555432
Q ss_pred ccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC---------------------------CcEEEEEcCCCce
Q 001391 117 ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---------------------------NSIRVWDISNSSI 169 (1088)
Q Consensus 117 ~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---------------------------g~V~iWd~~~~~~ 169 (1088)
+... +..+.. +..++|+| |++.|+.++.+ ..|.+||+.+++.
T Consensus 96 ------~~~~-l~~~~~-~~~~~wsp---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 96 ------SSKK-ILEAKN-IRSLEWNE---DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp ------EEEE-EEEESE-EEEEEECT---TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred ------ceEE-EEcCCC-ccceeECC---CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 1111 222233 99999999 99988887643 5789999988876
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCC-------eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg-------~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
+..+..+ .+..+.+ ++++ +++++..++ ...||.+.
T Consensus 165 ~~~l~~~---~~~~~~~---spdg-~~~~~~~~~~~~~~~~~~~l~~~d------------------------------- 206 (347)
T 2gop_A 165 IEEFEKP---RFSSGIW---HRDK-IVVNVPHREIIPQYFKFWDIYIWE------------------------------- 206 (347)
T ss_dssp EEEEEEE---TTCEEEE---ETTE-EEEEEECCCSSCCSSCCEEEEEEE-------------------------------
T ss_pred EeeecCC---CcccccC---CCCe-EEEEEecccccccccccccEEEeC-------------------------------
Confidence 3444331 2333443 4778 777665542 34555443
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC--------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE-
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD--------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD- 313 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D--------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~- 313 (1088)
.++ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++ ... ...+|...+..
T Consensus 207 --~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--------~~~--l~~~~~~~~~~~ 268 (347)
T 2gop_A 207 --DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE--------VMG--ILDEVDRGVGQA 268 (347)
T ss_dssp --TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC--------EEE--SSTTCCSEEEEE
T ss_pred --CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc--------eEe--ccccCCcccCCc
Confidence 111 1222333 555554 9999998887754 3677777 322 111 33455667776
Q ss_pred EEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCE-EEEEcC
Q 001391 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI-KVHQFQ 378 (1088)
Q Consensus 314 v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I-~iwd~~ 378 (1088)
+.|++.++++++.++.+++| + +++... +..+.+ .|.+++++| .++++++.++.. .+|.++
T Consensus 269 ~~~sdg~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~-~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 269 KIKDGKVYFTLFEEGSVNLY-IWDGEIKP-IAKGRH-WIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEETTEEEEEEEETTEEEEE-EESSSEEE-EECSSS-EEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cEEcCcEEEEEecCCcEEEE-EcCCceEE-EecCCC-eEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 88884488899999999999 8 565543 334455 699999999 677777777765 788775
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-08 Score=106.82 Aligned_cols=274 Identities=12% Similarity=-0.023 Sum_probs=180.0
Q ss_pred cceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
..++++++. ++| .+.++.. ++.|.+|+.. .. .... .+..+...+.++++.+
T Consensus 15 ~~~~~i~~d-------~~g----~l~v~~~~~~~v~~~d~~-~~-------------~~~~-~~~~~~~~~~~i~~~~-- 66 (299)
T 2z2n_A 15 TGPYGITVS-------DKG----KVWITQHKANMISCINLD-GK-------------ITEY-PLPTPDAKVMCLTISS-- 66 (299)
T ss_dssp CCEEEEEEC-------TTS----CEEEEETTTTEEEEECTT-CC-------------EEEE-ECSSTTCCEEEEEECT--
T ss_pred CCccceEEC-------CCC----CEEEEecCCCcEEEEcCC-CC-------------eEEe-cCCcccCceeeEEECC--
Confidence 468999998 777 4555544 7899999876 22 1111 1223457799999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
++.+.++...++.|..||.. ++. ..+..+ .......+.+ ++++.++++...++.|.+||..
T Consensus 67 -~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~d~~------------ 128 (299)
T 2z2n_A 67 -DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITE---GPNGDIWFTEMNGNRIGRITDD------------ 128 (299)
T ss_dssp -TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT------------
T ss_pred -CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEE---CCCCCEEEEecCCceEEEECCC------------
Confidence 88877776668889999986 332 222222 2233455555 4677777777778889988864
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
..........+...+.++++.+++..+++...++.|..||. +++. ..+ .
T Consensus 129 ---------------------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~~---~ 177 (299)
T 2z2n_A 129 ---------------------GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI------TEF---K 177 (299)
T ss_dssp ---------------------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE------EEE---E
T ss_pred ---------------------CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE------EEe---e
Confidence 11111122234567899999999988888777889999998 4322 111 2
Q ss_pred eeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
...+...+.++++. +.+.++...++.|.+|+.+++.... ...+.. .+.+++++++|++.++...++.|..|+..+.
T Consensus 178 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~ 256 (299)
T 2z2n_A 178 IPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA-RPHAITAGAGIDLWFTEWGANKIGRLTSNNI 256 (299)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEEETTTE
T ss_pred CCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCC-CceeEEECCCCCEEEeccCCceEEEECCCCc
Confidence 23344567889987 4566665568899999996554332 222333 5899999999997777667888999987421
Q ss_pred CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEe
Q 001391 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (1088)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~ 447 (1088)
+.....+ .....+.++++ +++.+++++..+.+..++.
T Consensus 257 -------------------~~~~~~~----------~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 257 -------------------IEEYPIQ----------IKSAEPHGICF-DGETIWFAMECDKIGKLTL 293 (299)
T ss_dssp -------------------EEEEECS----------SSSCCEEEEEE-CSSCEEEEETTTEEEEEEE
T ss_pred -------------------eEEEeCC----------CCCCccceEEe-cCCCEEEEecCCcEEEEEc
Confidence 1111111 11235788999 8899999887777776543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-09 Score=119.28 Aligned_cols=247 Identities=11% Similarity=-0.055 Sum_probs=159.9
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
..+..+..... ...+++|+ |+++ .++++.. ++.|..|+... . ...+..+..
T Consensus 18 ~~~~~l~~~~~-~~eg~~~d-------~~g~---~l~~~~~~~~~i~~~~~~~----------------~-~~~~~~~~~ 69 (296)
T 3e5z_A 18 AEARRLADGFT-WTEGPVYV-------PARS---AVIFSDVRQNRTWAWSDDG----------------Q-LSPEMHPSH 69 (296)
T ss_dssp CCCEEEECCCS-SEEEEEEE-------GGGT---EEEEEEGGGTEEEEEETTS----------------C-EEEEESSCS
T ss_pred CcEEEEecCCc-cccCCeEe-------CCCC---EEEEEeCCCCEEEEEECCC----------------C-eEEEECCCC
Confidence 33344443223 47899999 6762 3555544 78999999763 2 344455677
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc---eeEEEEeeecCCCCCcEEEE----EecC----
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER---CLLYSMKLWGDNLEALRIAS----GTIY---- 202 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~s----g~~d---- 202 (1088)
.+.+++++| +++++++...++.|.+||..+++.......... .....+++ ++++.++++ |+.+
T Consensus 70 ~~~~l~~~~---dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~---d~~G~l~vtd~~~g~~~~~~~ 143 (296)
T 3e5z_A 70 HQNGHCLNK---QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCL---APDGSLWFSDPTYGIDKPEEG 143 (296)
T ss_dssp SEEEEEECT---TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEE---CTTSCEEEEECSHHHHCGGGS
T ss_pred CcceeeECC---CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEE---CCCCCEEEECCcccccccccc
Confidence 899999999 999887776678999999988875433321111 11123333 577877776 3210
Q ss_pred -------CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 203 -------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 203 -------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
+.-.||.+. ....+..+..+.....+++|+|+++.+++.+
T Consensus 144 ~~~~~~~~~~~l~~~~---------------------------------~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~ 190 (296)
T 3e5z_A 144 YGGEMELPGRWVFRLA---------------------------------PDGTLSAPIRDRVKPNGLAFLPSGNLLVSDT 190 (296)
T ss_dssp SCCCCCSSSCEEEEEC---------------------------------TTSCEEEEECCCSSEEEEEECTTSCEEEEET
T ss_pred ccccccCCCcEEEEEC---------------------------------CCCCEEEeecCCCCCccEEECCCCCEEEEeC
Confidence 112344443 1122334456677789999999999987788
Q ss_pred CCCcEEEEEcCCCcccCCCCc-eeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeE
Q 001391 276 DDRSARIWEVRAEYWKDSDSI-EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~-~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
.++.|++|++..... . .... .+..+...+..+++. +.+.++. ++.|.+|+.+++.+..+..+.. +.
T Consensus 191 ~~~~i~~~~~~~~g~-----~~~~~~--~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~--~~ 259 (296)
T 3e5z_A 191 GDNATHRYCLNARGE-----TEYQGV--HFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT--TS 259 (296)
T ss_dssp TTTEEEEEEECSSSC-----EEEEEE--EECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC--CC
T ss_pred CCCeEEEEEECCCCc-----CcCCCe--EeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC--ce
Confidence 889999999873211 1 1111 223345556778887 4544444 8899999999988888877765 78
Q ss_pred EEEE-cCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 353 RCLY-DSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 353 ~l~~-~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
+++| .|+++.|+.++.++ +.-++....
T Consensus 260 ~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 260 NLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred eEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 9999 58999888888774 333344433
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-09 Score=122.40 Aligned_cols=269 Identities=12% Similarity=0.033 Sum_probs=169.5
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|..+.|+ +++. .++....++.++.|. .+....+..+...+.+++|+| +
T Consensus 7 ~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~---~ 55 (333)
T 2dg1_A 7 DLPTLFYS-------GKSN---SAVPIISESELQTIT------------------AEPWLEISKKGLQLEGLNFDR---Q 55 (333)
T ss_dssp CCCBCCSC-------GGGG---CSSCCCCGGGSCEEE------------------CEEEEEEESSCCCEEEEEECT---T
T ss_pred ccceeeec-------CCcc---ceeEEeecccCcccc------------------cceeEEEeccCccccCcEECC---C
Confidence 47777887 4431 222335577888882 233445566777889999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC----CeEEEEEeccCccccCCCCC
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d----g~I~vwd~~~~~~~~~~~~~ 222 (1088)
+++++++..++.|.+||..+++.......+ ...+.++++ ++++.++++...+ +.|.+||..
T Consensus 56 g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~---~~dg~l~v~~~~~~~~~~~i~~~d~~----------- 120 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKI---HKDGRLFVCYLGDFKSTGGIFAATEN----------- 120 (333)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEE---CTTSCEEEEECTTSSSCCEEEEECTT-----------
T ss_pred CCEEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEE---CCCCcEEEEeCCCCCCCceEEEEeCC-----------
Confidence 998888888999999999888765433222 223555655 5778777776666 689999877
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCcccCCC
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSD------DRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~------Dg~v~iWd~~~~~~~~~~ 294 (1088)
.......+. .+...+..++++|+|+.+++... .+.|..++..+++.
T Consensus 121 ----------------------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~---- 174 (333)
T 2dg1_A 121 ----------------------GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV---- 174 (333)
T ss_dssp ----------------------SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----
T ss_pred ----------------------CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE----
Confidence 222211121 24467999999999998887654 24455555443221
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcC--CCceeEEE--------cccCCCCeEEEEEcCCCC
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGS--DGKQLKMI--------KEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~--~~~~~~~~--------~~h~~~~V~~l~~~~dg~ 361 (1088)
. .+..+...+..++|+ +..+ ++...++.|.+|+. ++..+..+ .++ . .+..++++++|+
T Consensus 175 --~-----~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~-~~~~i~~d~~G~ 245 (333)
T 2dg1_A 175 --T-----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E-GPDSCCIDSDDN 245 (333)
T ss_dssp --E-----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S-EEEEEEEBTTCC
T ss_pred --E-----EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C-CCCceEECCCCC
Confidence 1 222223457788898 3444 55556889999998 34433221 122 2 478899999999
Q ss_pred EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCC
Q 001391 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHG 440 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g 440 (1088)
++++...++.|.+|+.++..+.. +..+.. ..++...+.+++|++++ .+++++.++
T Consensus 246 l~v~~~~~~~v~~~d~~g~~~~~------------------~~~~~~------~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNKRGYPIGQ------------------ILIPGR------DEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEETTTEEEEECTTSCEEEE------------------EECTTG------GGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEEcCCCEEEEECCCCCEEEE------------------EEcCCC------ccccccCcceEEECCCCCEEEEEeCcc
Confidence 88888888999999885432111 111110 00111257889999886 677777663
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-09 Score=121.32 Aligned_cols=261 Identities=8% Similarity=-0.070 Sum_probs=170.1
Q ss_pred CCeEEEEECCCCeeEEEEee-----eCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCc
Q 001391 43 GSQVLLYDLEAGTLIRPFQV-----FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPE 117 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~-----~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~ 117 (1088)
++.|.+||.++++....+.. .-+....++.+. .+. .+++..+++.|.+||..+
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-------~~~----lyv~~~~~~~v~viD~~t----------- 73 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-------DGI----GWIVVNNSHVIFAIDINT----------- 73 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-------TTE----EEEEEGGGTEEEEEETTT-----------
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-------CCE----EEEEEcCCCEEEEEECcc-----------
Confidence 58999999999988765421 112236777776 331 445555589999999885
Q ss_pred cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCce----eEEEEeeecCCCCC
Q 001391 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC----LLYSMKLWGDNLEA 193 (1088)
Q Consensus 118 ~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~----~~~s~~~~~~s~~~ 193 (1088)
.+.+..+. .......+++++ ++...++...++.|.+||..+++....+..+... ....+++ .++
T Consensus 74 ----~~~~~~i~-~~~~p~~i~~~~---~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~----~~~ 141 (328)
T 3dsm_A 74 ----FKEVGRIT-GFTSPRYIHFLS---DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ----YGK 141 (328)
T ss_dssp ----CCEEEEEE-CCSSEEEEEEEE---TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE----ETT
T ss_pred ----cEEEEEcC-CCCCCcEEEEeC---CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE----ECC
Confidence 34445553 346789999998 8854444447999999999999887776533300 1112332 234
Q ss_pred cEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEE
Q 001391 194 LRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (1088)
Q Consensus 194 ~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~ 272 (1088)
.++++.. .++.|.++|.. +.+.+..+.. ......++++|+|++++
T Consensus 142 ~lyv~~~~~~~~v~viD~~---------------------------------t~~~~~~i~~-g~~p~~i~~~~dG~l~v 187 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTE---------------------------------TDKVVDELTI-GIQPTSLVMDKYNKMWT 187 (328)
T ss_dssp EEEEEECTTCCEEEEEETT---------------------------------TTEEEEEEEC-SSCBCCCEECTTSEEEE
T ss_pred EEEEEcCCCCCEEEEEECC---------------------------------CCeEEEEEEc-CCCccceEEcCCCCEEE
Confidence 4444443 48899999998 4455555543 23457889999999887
Q ss_pred EEECC----------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCce
Q 001391 273 SVSDD----------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQ 339 (1088)
Q Consensus 273 s~s~D----------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~ 339 (1088)
++..+ +.|.++|..+.+. ... ...+.......++++ +..++.+.. .|.+||. +++.
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~id~~t~~v--------~~~-~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 188 ITDGGYEGSPYGYEAPSLYRIDAETFTV--------EKQ-FKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EBCCBCTTCSSCBCCCEEEEEETTTTEE--------EEE-EECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred EECCCccCCccccCCceEEEEECCCCeE--------EEE-EecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 77665 7899999987532 221 111112367899998 567776654 8999998 4443
Q ss_pred eE-EEcccCCCCeEEEEEcC-CCCEEEEE----eCCCCEEEEEcCCCCC
Q 001391 340 LK-MIKEHIGRGIWRCLYDS-LSSLLVTA----GFDSAIKVHQFQAFLP 382 (1088)
Q Consensus 340 ~~-~~~~h~~~~V~~l~~~~-dg~~l~tg----~~Dg~I~iwd~~~~~~ 382 (1088)
.. .+....+.....++++| ++.+.++. ..++.|.+||.+++.+
T Consensus 257 ~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~ 305 (328)
T 3dsm_A 257 PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLI 305 (328)
T ss_dssp CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEE
T ss_pred eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEE
Confidence 21 11111123588999999 55666666 5789999999875433
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-08 Score=117.07 Aligned_cols=306 Identities=9% Similarity=-0.009 Sum_probs=190.5
Q ss_pred CCCCceEEecCCCceee------eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC--CCeeEEEEeeeCCcceEEEE
Q 001391 2 GKKDLSEWRLDVGQYLG------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~~------~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~--tg~~~~~~~~~~~~~V~~i~ 72 (1088)
.++.|.++|..+++... .+..+.|+ || +++|.+++ ++.|.+||+. +++.+.++.... ...+++
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g~~p~~v~~S--pD----Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--~P~~ia 246 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTGYAVHISRLS--AS----GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--EARSIE 246 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEEC--TT----SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--EEEEEE
T ss_pred CCCeEEEEECCCCeEEEEEeCCCCccceEEC--CC----CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--CCceeE
Confidence 57889999999987432 35689999 99 89988877 6899999995 888888887633 468999
Q ss_pred ecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeecc----------CCCC-cEEEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP----------RLSH-WVFDVCF 140 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~----------~h~~-~I~~v~f 140 (1088)
|++. .+|||+ .++++ ..+++|.|+|..+. +.+..+. .|.. .+..+.+
T Consensus 247 ~s~~---~~pDGk---~l~v~n~~~~~v~ViD~~t~---------------~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 247 TSKM---EGWEDK---YAIAGAYWPPQYVIMDGETL---------------EPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp ECCS---TTCTTT---EEEEEEEETTEEEEEETTTC---------------CEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred Eccc---cCCCCC---EEEEEEccCCeEEEEECCCC---------------cEEEEEeccccccccccccCCCceEEEEE
Confidence 9820 002773 34333 34799999997642 2333221 1323 6888888
Q ss_pred ecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEEEeccCccccC
Q 001391 141 LKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 141 ~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~ 218 (1088)
++ ++. .++....+|.|.++|....+.+....-..........+ ++++.+++++. .++.|.++|..
T Consensus 306 s~---~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~---~pdgr~~~va~~~sn~V~ViD~~------- 372 (567)
T 1qks_A 306 SH---YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL---DGSHRYFITAANARNKLVVIDTK------- 372 (567)
T ss_dssp CS---SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE---CTTSCEEEEEEGGGTEEEEEETT-------
T ss_pred cC---CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE---CCCCCEEEEEeCCCCeEEEEECC-------
Confidence 88 655 45555667999999998765433222122222334444 67888776654 67999999998
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeC-----CCCCEEEEEEcCCCCEE-EEEE-CCCcEEEEEcCCCccc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-----HEGSIFRIEWSSCGSKL-VSVS-DDRSARIWEVRAEYWK 291 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----h~~~V~~v~~sp~g~~l-~s~s-~Dg~v~iWd~~~~~~~ 291 (1088)
+++.+..+.- |.+.-..+ ++|++..+ +++. .++.|.++|..+.+..
T Consensus 373 --------------------------t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 373 --------------------------EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp --------------------------TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred --------------------------CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 3443433332 43322222 57875544 4443 4689999998873210
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-------CCcEEEEcC-CC------ceeEEEcc-------cCC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-------DCTCRVWGS-DG------KQLKMIKE-------HIG 348 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-------Dg~i~vWd~-~~------~~~~~~~~-------h~~ 348 (1088)
....+.++ .+......-..+..+ +.++..... ..+|.|+|+ +. +....+.- ..+
T Consensus 426 -~~~~kvv~--~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (567)
T 1qks_A 426 -DNAWKILD--SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ 502 (567)
T ss_dssp -TTBTSEEE--EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC
T ss_pred -cccCEEEE--EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC
Confidence 00012333 333222222234455 456665542 459999998 33 12233421 123
Q ss_pred CCeEEEEEcCCCCEEEEEe-----CCCCEEEEEcCC
Q 001391 349 RGIWRCLYDSLSSLLVTAG-----FDSAIKVHQFQA 379 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~-----~Dg~I~iwd~~~ 379 (1088)
+.++.+.|+++|+.+..+. .++.|.++|..+
T Consensus 503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred cceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 3589999999999776653 379999999854
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.7e-09 Score=112.35 Aligned_cols=185 Identities=10% Similarity=0.103 Sum_probs=137.8
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
+++|++++ ++.|++||.++|+.+.++..+....+++++++ |+| .+++ +.++.|..||.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~-------pdG----~ilv-s~~~~V~~~d~~-------- 64 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-------KAG----EILF-SYSKGAKMITRD-------- 64 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC-------TTS----CEEE-ECBSEEEEECTT--------
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC-------CCC----CEEE-eCCCCEEEECCC--------
Confidence 57888888 69999999999999999987653468999999 787 5666 678889998873
Q ss_pred CCCccccccceeeeccCC-CCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEeccCCc-----eeEEEEee
Q 001391 114 YQPETCVNLSLVQSLPRL-SHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPER-----CLLYSMKL 186 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h-~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~~-----~~~~s~~~ 186 (1088)
.+.+..+..+ ...+.++.+.| +|+++++.+. ++.|..+|. +++.+.++..... .....+.
T Consensus 65 --------G~~~W~~~~~~~~~~~~~~~~~---dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~- 131 (276)
T 3no2_A 65 --------GRELWNIAAPAGCEMQTARILP---DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN- 131 (276)
T ss_dssp --------SCEEEEEECCTTCEEEEEEECT---TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE-
T ss_pred --------CCEEEEEcCCCCccccccEECC---CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce-
Confidence 3455555544 35789999999 9999998887 777777775 6777666542111 0011111
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp 266 (1088)
..+++.++++...++.|..||.. ++.+.++..+ ..+.++...+
T Consensus 132 --~~~~G~~lv~~~~~~~v~~~d~~----------------------------------G~~~w~~~~~-~~~~~~~~~~ 174 (276)
T 3no2_A 132 --KNKKGNYLVPLFATSEVREIAPN----------------------------------GQLLNSVKLS-GTPFSSAFLD 174 (276)
T ss_dssp --ECTTSCEEEEETTTTEEEEECTT----------------------------------SCEEEEEECS-SCCCEEEECT
T ss_pred --ECCCCCEEEEecCCCEEEEECCC----------------------------------CCEEEEEECC-CCccceeEcC
Confidence 25789999999999999999976 4445555543 4566788899
Q ss_pred CCCEEEEEECCCcEEEEEcCCCc
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
+|..+++++.++.|..+|..+++
T Consensus 175 ~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 175 NGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp TSCEEEECBTTSEEEEECTTTCC
T ss_pred CCCEEEEeCCCCeEEEEeCcCCc
Confidence 99999999998899999998764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-07 Score=103.47 Aligned_cols=273 Identities=9% Similarity=-0.039 Sum_probs=176.3
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEE-
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALF- 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~- 94 (1088)
..+.+|++. ++ +++.++.. ++.|.+||.. ++... +... ....+.++++. +++ .+.++.
T Consensus 20 ~~p~~i~~d--~~----g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-------~~g----~l~v~~~ 80 (300)
T 2qc5_A 20 SGPYGITSS--ED----GKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-------SLG----DIWFTEN 80 (300)
T ss_dssp CCEEEEEEC--TT----SCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-------TTS----CEEEEET
T ss_pred CCcceeeEC--CC----CCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-------CCC----CEEEEec
Confidence 467899999 88 77777765 5899999988 65443 3321 22468899998 776 444444
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
+++.|..|+.. .. .. ...+......+.++++.+ ++.+.++...++.|..+|.. ++......
T Consensus 81 ~~~~v~~~d~~-g~-------------~~-~~~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i~~~~~~-g~~~~~~~ 141 (300)
T 2qc5_A 81 GANKIGKLSKK-GG-------------FT-EYPLPQPDSGPYGITEGL---NGDIWFTQLNGDRIGKLTAD-GTIYEYDL 141 (300)
T ss_dssp TTTEEEEECTT-SC-------------EE-EEECSSTTCCEEEEEECS---TTCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CCCeEEEECCC-CC-------------eE-EecCCCCCCCCccceECC---CCCEEEEccCCCeEEEECCC-CCEEEccC
Confidence 47889988866 22 11 112223346789999998 88877776668899999987 55442211
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.........+.+ ++++.+.++....+.|..++.. ..........
T Consensus 142 ~~~~~~~~~i~~---d~~g~l~v~~~~~~~i~~~~~~---------------------------------g~~~~~~~~~ 185 (300)
T 2qc5_A 142 PNKGSYPAFITL---GSDNALWFTENQNNSIGRITNT---------------------------------GKLEEYPLPT 185 (300)
T ss_dssp SSTTCCEEEEEE---CTTSSEEEEETTTTEEEEECTT---------------------------------CCEEEEECSS
T ss_pred CCCCCCceeEEE---CCCCCEEEEecCCCeEEEECCC---------------------------------CcEEEeeCCC
Confidence 112233445554 4667766666667888888864 1111112234
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
+...+.++++.++|...++....+.|..|+. ++.. ..+ ....+...+.++++. +.+.++...++.|..
T Consensus 186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~------~~~---~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 186 NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI------SEY---DIPTPNARPHAITAGKNSEIWFTEWGANQIGR 255 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EEE---ECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE------EEE---ECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence 4567899999999988877777788999998 3221 111 233345668889997 455555556789999
Q ss_pred EcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 333 WGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 333 Wd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|+.+++.... +..... .+.++++.++|++.++.. . .|..++.
T Consensus 256 ~~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 256 ITNDNTIQEYQLQTENA-EPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECTTSCEEEEECCSTTC-CCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCcEEEEECCccCC-ccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9996654322 222233 578999999998666554 4 6666665
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-08 Score=126.02 Aligned_cols=240 Identities=8% Similarity=0.007 Sum_probs=156.9
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeC--C----eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSG--S----QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d--~----~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.+.+++|| || +++||.+.+ | +|++||+.+|+.+..... . ..+.+++|+ |||+ .++.
T Consensus 126 ~~~~~~~S--PD----g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~ws-------pDg~---~l~~ 187 (710)
T 2xdw_A 126 ALRGYAFS--ED----GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWT-------HDGK---GMFY 187 (710)
T ss_dssp EEEEEEEC--TT----SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEEC-------TTSS---EEEE
T ss_pred EEEEEEEC--CC----CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEE-------eCCC---EEEE
Confidence 58899999 99 899887652 3 899999999988764332 2 236789999 8883 4555
Q ss_pred EECCCE----------------EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-
Q 001391 93 LFGEKR----------------VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS- 155 (1088)
Q Consensus 93 ~~gd~~----------------v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~- 155 (1088)
+..++. |.+|++.+.. ....++.....|...+..+.|+| ||++|+.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~-----------~~~~~v~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~~ 253 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ-----------SEDILCAEFPDEPKWMGGAELSD---DGRYVLLSIRE 253 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCG-----------GGCEEEECCTTCTTCEEEEEECT---TSCEEEEEEEC
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCc-----------ccceEEeccCCCCeEEEEEEEcC---CCCEEEEEEEc
Confidence 555544 8999987532 01124444455677899999999 9999888765
Q ss_pred ----CCcEEEEEcCC------Cc-eEEEeccCCceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEeccCccccCCC
Q 001391 156 ----DNSIRVWDISN------SS-IILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 156 ----Dg~V~iWd~~~------~~-~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~~~~~~~~~~ 220 (1088)
+..|.+||+.+ +. ....+..+.....+. + ++++..|+..+. .+.|.+||+.
T Consensus 254 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~--~---s~dg~~l~~~s~~~~~~~~l~~~d~~--------- 319 (710)
T 2xdw_A 254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY--V---TNEGTVFTFKTNRHSPNYRLINIDFT--------- 319 (710)
T ss_dssp SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE--E---EEETTEEEEEECTTCTTCEEEEEETT---------
T ss_pred cCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEE--E---eccCCEEEEEECCCCCCCEEEEEeCC---------
Confidence 67899999986 43 344444444333222 1 356666665544 3368888887
Q ss_pred CCCCccCCCCCCCCceeEeccccccee--eeEEEeCCCC--CEEEEEEcCCCCEEEEEECCCcE--EEEEcCCCcccCCC
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAV--NLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSA--RIWEVRAEYWKDSD 294 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~gh~~--~V~~v~~sp~g~~l~s~s~Dg~v--~iWd~~~~~~~~~~ 294 (1088)
... ....+..|.. .+..++|++++.++++...|+.. ++|++.+++
T Consensus 320 ------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~----- 370 (710)
T 2xdw_A 320 ------------------------DPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA----- 370 (710)
T ss_dssp ------------------------SCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-----
T ss_pred ------------------------CCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-----
Confidence 221 2344445544 68889999888888889888854 555664432
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEE-EEe---CCCcEEEEcC-CCc
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFII-TAG---EDCTCRVWGS-DGK 338 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~-sg~---~Dg~i~vWd~-~~~ 338 (1088)
.+. .+..+...+..+.++ +..++ +.+ ..+++..||+ +++
T Consensus 371 ---~~~--~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 371 ---LLK--IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---EEE--EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---EEE--ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 222 444556778888886 33443 333 3478999998 444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=111.14 Aligned_cols=209 Identities=8% Similarity=0.041 Sum_probs=149.0
Q ss_pred eEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 89 FEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 89 ~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.+|++ ++++.|.+||.++ .+.+.++..+. ..+.+++++| +|++++ +.++.|..||. +
T Consensus 6 ~~lv~~~~~~~v~~~d~~t---------------G~~~w~~~~~~~~~~~~~~~~p---dG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDT---------------KEIVWEYPLEKGWECNSVAATK---AGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEEECTTCSEEEEEETTT---------------TEEEEEEECCTTCCCCEEEECT---TSCEEE--ECBSEEEEECT-T
T ss_pred cEEEeeCCCCEEEEEECCC---------------CeEEEEeCCCccCCCcCeEECC---CCCEEE--eCCCCEEEECC-C
Confidence 44444 5589999999864 45566666665 5789999999 999888 35788999999 8
Q ss_pred CceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
++.+.++..+....+.++.. .+++..+++.+. ++.|..+|..
T Consensus 65 G~~~W~~~~~~~~~~~~~~~---~~dG~~lv~~~~~~~~v~~vd~~---------------------------------- 107 (276)
T 3no2_A 65 GRELWNIAAPAGCEMQTARI---LPDGNALVAWCGHPSTILEVNMK---------------------------------- 107 (276)
T ss_dssp SCEEEEEECCTTCEEEEEEE---CTTSCEEEEEESTTEEEEEECTT----------------------------------
T ss_pred CCEEEEEcCCCCccccccEE---CCCCCEEEEecCCCCEEEEEeCC----------------------------------
Confidence 99988887654444555554 578999988876 6777766653
Q ss_pred eeeeEEEe------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 246 AVNLFRLV------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 246 ~~~~~~~~------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
++.+..+. ++......+++.++|+++++.+.++.|..||.. ++. +. .+..+ ..+.++.+.
T Consensus 108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~--------~w--~~~~~-~~~~~~~~~~~ 175 (276)
T 3no2_A 108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL--------LN--SVKLS-GTPFSSAFLDN 175 (276)
T ss_dssp SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE--------EE--EEECS-SCCCEEEECTT
T ss_pred CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE--------EE--EEECC-CCccceeEcCC
Confidence 22222222 222345567889999999999999999999987 532 21 22222 234445555
Q ss_pred CCEEEEEeCCCcEEEEcCC-CceeEEEcccCC-----CCeEEEEEcCCCCEEEEEe
Q 001391 318 DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIG-----RGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~-~~~~~~~~~h~~-----~~V~~l~~~~dg~~l~tg~ 367 (1088)
+++++++..++.|..+|.. |+.+.++..+.. .-+..+...++|+++++..
T Consensus 176 g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 176 GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 6788888888899999994 999998865421 1277888899999888873
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.10 E-value=9.9e-09 Score=110.87 Aligned_cols=236 Identities=7% Similarity=-0.068 Sum_probs=155.4
Q ss_pred ceEEEEecccccccCCCccceeeEEE-E-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVA-L-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la-~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
...+++++ +++ .+.+ + ..++.|.+|+..... .......+...+.++++.+
T Consensus 25 ~p~~i~~~-------~~g----~l~v~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~p~~i~~~~-- 76 (270)
T 1rwi_B 25 SPSGVAVD-------SAG----NVYVTSEGMYGRVVKLATGSTG---------------TTVLPFNGLYQPQGLAVDG-- 76 (270)
T ss_dssp CEEEEEEC-------TTC----CEEEEECSSSCEEEEECC--------------------EECCCCSCCSCCCEEECT--
T ss_pred CccceEEC-------CCC----CEEEEccCCCCcEEEecCCCcc---------------cceEeeCCcCCcceeEECC--
Confidence 57888888 776 4554 4 457889999865321 1111122335678899999
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
++.++++.. ++.|.+||....... .+..........+++ ++++.++++...++.|.+|+..
T Consensus 77 -~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~---~~~g~l~v~~~~~~~i~~~~~~------------- 137 (270)
T 1rwi_B 77 -AGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAV---DTQGAVYVADRGNNRVVKLAAG------------- 137 (270)
T ss_dssp -TCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEE---CTTCCEEEEEGGGTEEEEECTT-------------
T ss_pred -CCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEE---CCCCCEEEEECCCCEEEEEECC-------------
Confidence 888665555 889999998765433 222222223455555 4677777777778899999754
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
..........+...+.+++++|+|+.+++...++.|.+|+...... .. ..
T Consensus 138 --------------------~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--------~~--~~ 187 (270)
T 1rwi_B 138 --------------------SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--------VV--LP 187 (270)
T ss_dssp --------------------CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE--------EE--CC
T ss_pred --------------------CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce--------Ee--ec
Confidence 1111111122334678899999999888877788999999876422 11 12
Q ss_pred eccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 305 ~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..+...+.++++. +.++++...++.|.+|+..+.............+.+++++++|+++++...++.|+++++..
T Consensus 188 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 188 FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 2233567889997 45666666788999999966554443322212589999999999888988999999999853
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-08 Score=123.75 Aligned_cols=243 Identities=9% Similarity=0.018 Sum_probs=157.6
Q ss_pred ceEEEEecccccccCCCccceeeEEEEE-C-CC----EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALF-G-EK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f 140 (1088)
.+.+++|| ||| .+|+.. . ++ .|++||+..+. .......+ ..+.+++|
T Consensus 126 ~~~~~~~S-------PDg----~~la~~~~~~G~~~~~i~v~d~~tg~---------------~~~~~~~~-~~~~~~~w 178 (710)
T 2xdw_A 126 ALRGYAFS-------EDG----EYFAYGLSASGSDWVTIKFMKVDGAK---------------ELPDVLER-VKFSCMAW 178 (710)
T ss_dssp EEEEEEEC-------TTS----SEEEEEEEETTCSCEEEEEEETTTTE---------------EEEEEEEE-ECSCCEEE
T ss_pred EEEEEEEC-------CCC----CEEEEEEcCCCCceEEEEEEECCCCC---------------CCcccccC-cccceEEE
Confidence 57889999 888 444443 2 22 89999998543 12111111 22678999
Q ss_pred ecccCCCCEEEEEEcCCc----------------EEEEEcCCCce--EEEeccCC-ceeEEEEeeecCCCCCcEEEEEec
Q 001391 141 LKVCNGNRSLAIGCSDNS----------------IRVWDISNSSI--ILEVHSPE-RCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 141 ~p~~~d~~~lasgs~Dg~----------------V~iWd~~~~~~--~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
+| ||+.|+.++.++. |++|++.+++. ......+. .....++.+ ++|+.+|+....
T Consensus 179 sp---Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~---SpDg~~l~~~~~ 252 (710)
T 2xdw_A 179 TH---DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL---SDDGRYVLLSIR 252 (710)
T ss_dssp CT---TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE---CTTSCEEEEEEE
T ss_pred Ee---CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE---cCCCCEEEEEEE
Confidence 99 9999999888766 99999988763 22223221 222344554 788988887654
Q ss_pred -----CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee-eeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 202 -----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 202 -----dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
+..|.+||+.+... + ..+. ....+..+...+.. .|+|+|+.|+..+
T Consensus 253 ~~~~~~~~l~~~d~~~~~~-~--------------------------~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s 304 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESN-G--------------------------ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKT 304 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSS-S--------------------------SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEE
T ss_pred ccCCCccEEEEEECccccc-c--------------------------cCCccceEEeeCCCCcEEE-EEeccCCEEEEEE
Confidence 56899999871000 0 0011 34556667666655 4889998887766
Q ss_pred CC----CcEEEEEcCCCcccCCCCceeeeceeeeccCc--ceEEEEEC-C-CEEEEEeCCCc--EEEEcC-CCceeEEEc
Q 001391 276 DD----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT-D-SFIITAGEDCT--CRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 276 ~D----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~--~I~~v~~~-~-~~l~sg~~Dg~--i~vWd~-~~~~~~~~~ 344 (1088)
.+ ..|.+||+.++.. .... .+..|.. .+..+.|. + .++++...|+. |.+|++ +|+.+..+.
T Consensus 305 ~~~~~~~~l~~~d~~~~~~------~~~~--~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 305 NRHSPNYRLINIDFTDPEE------SKWK--VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp CTTCTTCEEEEEETTSCCG------GGCE--EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred CCCCCCCEEEEEeCCCCCc------ccce--eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 53 3599999877531 1112 4444443 67778887 4 56777888885 566777 788788888
Q ss_pred ccCCCCeEEEEEcCCCCEEEEE-e---CCCCEEEEEcCC
Q 001391 345 EHIGRGIWRCLYDSLSSLLVTA-G---FDSAIKVHQFQA 379 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l~tg-~---~Dg~I~iwd~~~ 379 (1088)
.+.+ .|..+.++|++..++.. + ..++|..||+.+
T Consensus 377 ~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 377 LEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp CCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred CCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 7766 68899999998765533 2 347899999854
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-08 Score=110.89 Aligned_cols=235 Identities=11% Similarity=0.008 Sum_probs=151.8
Q ss_pred eeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+..+..+.....+++|+| +++ +++++..++.|..||..++ ...+..+. .....+++ ++++.++++...++
T Consensus 20 ~~~l~~~~~~~eg~~~d~---~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~-~~~~~l~~---~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVP---ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS-HHQNGHCL---NKQGHLIACSHGLR 90 (296)
T ss_dssp CEEEECCCSSEEEEEEEG---GGTEEEEEEGGGTEEEEEETTSC--EEEEESSC-SSEEEEEE---CTTCCEEEEETTTT
T ss_pred EEEEecCCccccCCeEeC---CCCEEEEEeCCCCEEEEEECCCC--eEEEECCC-CCcceeeE---CCCCcEEEEecCCC
Confidence 344445667789999999 988 7888888999999999887 44443332 23445555 57888887777778
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe---C-CCCCEEEEEEcCCCCEEEEEEC---
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---G-HEGSIFRIEWSSCGSKLVSVSD--- 276 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---g-h~~~V~~v~~sp~g~~l~s~s~--- 276 (1088)
.|.+||.. +++...... + ....+..++++|+|+++++.+.
T Consensus 91 ~i~~~d~~---------------------------------~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~ 137 (296)
T 3e5z_A 91 RLERQREP---------------------------------GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGI 137 (296)
T ss_dssp EEEEECST---------------------------------TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHH
T ss_pred eEEEEcCC---------------------------------CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccc
Confidence 99999986 222111111 1 1234678999999998887431
Q ss_pred --------------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC--CCc
Q 001391 277 --------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGK 338 (1088)
Q Consensus 277 --------------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~--~~~ 338 (1088)
.+.|..++.. ++ +. ....+......++|+ +..+++.+.++.|.+|++ +++
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~---------~~--~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 138 DKPEEGYGGEMELPGRWVFRLAPD-GT---------LS--APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE 205 (296)
T ss_dssp HCGGGSSCCCCCSSSCEEEEECTT-SC---------EE--EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC
T ss_pred ccccccccccccCCCcEEEEECCC-CC---------EE--EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc
Confidence 2344444433 21 11 334555667889998 566777778899999998 344
Q ss_pred e---eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeec
Q 001391 339 Q---LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT 415 (1088)
Q Consensus 339 ~---~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (1088)
. ...+..+.+ .+..++++++|++.++. ++.|.+|+.+++.+.. +
T Consensus 206 ~~~~~~~~~~~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~------------------------------~ 252 (296)
T 3e5z_A 206 TEYQGVHFTVEPG-KTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGR------------------------------V 252 (296)
T ss_dssp EEEEEEEECCSSS-CCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEE------------------------------E
T ss_pred CcCCCeEeeCCCC-CCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEE------------------------------E
Confidence 4 233433333 46789999999876666 7889999986432211 1
Q ss_pred cCCCCceEEEEe-ccCCeEEEEecCCeEEEEEe
Q 001391 416 DSKSEYVRCLHL-TSEDTLYIATNHGYLYHTKL 447 (1088)
Q Consensus 416 ~~~~~~V~~l~~-s~~~~ll~~t~~g~i~~~~~ 447 (1088)
..+.. +.+++| .+++..+..++.+.++.++.
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~ 284 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIET 284 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETTEEEEEEC
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEc
Confidence 11223 778888 46765444444566776554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-07 Score=100.55 Aligned_cols=273 Identities=10% Similarity=-0.041 Sum_probs=176.6
Q ss_pred cceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
..++++++. ++| .+.++. +++.|.+|+.. .. ... ..+..+...+.++++.+
T Consensus 20 ~~p~~i~~d-------~~g----~l~v~~~~~~~v~~~~~~-~~-------------~~~-~~~~~~~~~~~~i~~~~-- 71 (300)
T 2qc5_A 20 SGPYGITSS-------EDG----KVWFTQHKANKISSLDQS-GR-------------IKE-FEVPTPDAKVMCLIVSS-- 71 (300)
T ss_dssp CCEEEEEEC-------TTS----CEEEEETTTTEEEEECTT-SC-------------EEE-EECSSTTCCEEEEEECT--
T ss_pred CCcceeeEC-------CCC----CEEEEcCCCCeEEEECCC-Cc-------------eEE-EECCCCCCcceeEEECC--
Confidence 368899998 777 455554 57999999876 22 121 12233446799999998
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
++.+.++...++.|..||.. ++.. .+..+ .......+++ .+++.+.++...++.|..++..
T Consensus 72 -~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~------------ 133 (300)
T 2qc5_A 72 -LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITE---GLNGDIWFTQLNGDRIGKLTAD------------ 133 (300)
T ss_dssp -TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEE---CSTTCEEEEETTTTEEEEECTT------------
T ss_pred -CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceE---CCCCCEEEEccCCCeEEEECCC------------
Confidence 88877766667889999987 5543 22221 2234555555 4677777777667888888865
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
.......+......+.++++.++++..++...++.|..++. +++. .. +.
T Consensus 134 ---------------------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~ 182 (300)
T 2qc5_A 134 ---------------------GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL------EE---YP 182 (300)
T ss_dssp ---------------------SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EE
T ss_pred ---------------------CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE------EE---ee
Confidence 11111122334567899999999997777777788999988 4321 11 12
Q ss_pred eeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
...+...+..+++. +.+.++....+.|.+|+.+++.... +..+.. .+.+++++++|++.++...++.|..++..+.
T Consensus 183 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~ 261 (300)
T 2qc5_A 183 LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA-RPHAITAGKNSEIWFTEWGANQIGRITNDNT 261 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEECTTSC
T ss_pred CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC-CceEEEECCCCCEEEeccCCCeEEEECCCCc
Confidence 33344568888887 4555555566789999996655443 222333 5889999999987777666788999987431
Q ss_pred CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEE
Q 001391 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTK 446 (1088)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~ 446 (1088)
+.....+ .....+.++++.++|.+++++.. .+..++
T Consensus 262 -------------------~~~~~~~----------~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 262 -------------------IQEYQLQ----------TENAEPHGITFGKDGSVWFALKC-KIGKLN 297 (300)
T ss_dssp -------------------EEEEECC----------STTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred -------------------EEEEECC----------ccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence 1111111 11234678889999999888874 666443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-05 Score=97.30 Aligned_cols=464 Identities=9% Similarity=0.014 Sum_probs=254.6
Q ss_pred CCceEEecCCCcee---e-------eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcc-eEEEE
Q 001391 4 KDLSEWRLDVGQYL---G-------EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR-LHGIS 72 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~---~-------~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~-V~~i~ 72 (1088)
+.+..||..+++.. . .|.++... ++ +.+.+ |+.+-|..||..+++............ |..+.
T Consensus 107 ~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d--~~----g~lwi-~t~~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~ 179 (795)
T 4a2l_A 107 DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEI--SP----EQLLI-STPEGLIMFDIKESKFIDDSFSTAMHKTIASTL 179 (795)
T ss_dssp SCEEEEETTTTEEEEECCEETTEECCCCEEEEE--ET----TEEEE-EETTEEEEEETTTTEEECSSSCHHHHTCCEEEE
T ss_pred CchheeCCCCCeEEeccccccCCCceEEEEEEC--CC----CCEEE-EECCceEEEECCCCEEEeccCCCCCCcceEEEE
Confidence 34778887766511 1 17888887 66 55554 444569999988765432111111123 77777
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
.. +++ .+.+...++.+..|+..... .+.... ..+...|.++...+ ++.+. .
T Consensus 180 ~d-------~~g----~lwigt~~~Gl~~~~~~~~~-------------~~~~~~-~~~~~~i~~i~~d~---~g~lw-i 230 (795)
T 4a2l_A 180 YR-------QGD----QIYIGTSTDGLYTYSITQKT-------------FEKVIP-ILGTKQIQAILQQS---PTRIW-V 230 (795)
T ss_dssp EE-------ETT----EEEEEESSSCEEEEETTTCC-------------EEECC-----CCCEEEEEEEE---TTEEE-E
T ss_pred EC-------CCC----CEEEEECCCCEEEEeCCCCe-------------EEEecC-CCCCCeeEEEEEcC---CCCEE-E
Confidence 76 555 56565555568888865422 111110 12346789988877 76644 4
Q ss_pred EEcCCcEEEEEcCCCceEEEeccC------CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSP------ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~------~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
|+.++-+.+||..+++...-...+ ....++++.. +.++.+.+ |+.. .|.+|+..+
T Consensus 231 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~---d~~g~lWi-gt~~-Gl~~~~~~~-------------- 291 (795)
T 4a2l_A 231 ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAM---DSQNRLWI-GTFN-DLNIYHEGT-------------- 291 (795)
T ss_dssp EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEE---CTTSCEEE-EESS-CEEEEETTT--------------
T ss_pred EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEE---cCCCCEEE-EeCC-hhheEcCCC--------------
Confidence 555545889998776544322211 1233555543 34554443 4444 588888761
Q ss_pred CCCCCCCCceeEecccccceeeeEEEe--------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCcee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLV--------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 298 (1088)
.. +..+. -....|.++...++|... .|+.++-|..|+...... +.
T Consensus 292 -------------------~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~------~~ 344 (795)
T 4a2l_A 292 -------------------DS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRF------KN 344 (795)
T ss_dssp -------------------TE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSS------EE
T ss_pred -------------------Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccc------eE
Confidence 11 11111 123579999999988754 455666688888765432 11
Q ss_pred eecee--eeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCceeEEEcc--------cCCCCeEEEEEcCCCCEEEEEe
Q 001391 299 VGSSV--LYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKE--------HIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 299 i~~~~--~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~--------h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
+.... ..-....|.++... ...|-.|..++-+..|+........+.. -....|.+++..+++++|..|+
T Consensus 345 ~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt 424 (795)
T 4a2l_A 345 IRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT 424 (795)
T ss_dssp ECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE
T ss_pred EcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe
Confidence 11000 00123468888887 4567778888889999985444444321 1123699999999988566677
Q ss_pred CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEe
Q 001391 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (1088)
Q Consensus 368 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~ 447 (1088)
.++-+..++..+.....+.. ... ......|.++...+++.+.+++.. .++.++
T Consensus 425 ~~~Gl~~~d~~~~~~~~~~~------------------~~~-------~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~- 477 (795)
T 4a2l_A 425 HAGGLSILHRNSGQVENFNQ------------------RNS-------QLVNENVYAILPDGEGNLWLGTLS-ALVRFN- 477 (795)
T ss_dssp TTTEEEEEETTTCCEEEECT------------------TTS-------CCSCSCEEEEEECSSSCEEEEESS-CEEEEE-
T ss_pred CcCceeEEeCCCCcEEEeec------------------CCC-------CcCCCeeEEEEECCCCCEEEEecC-ceeEEe-
Confidence 77779999885432211110 000 011246889999889999999984 466443
Q ss_pred ccCCcceeEEeeee-----cCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccc
Q 001391 448 CDMDSVNWNKILQV-----SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER 522 (1088)
Q Consensus 448 ~~~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~ 522 (1088)
..+..+...... -....+.++..... ..+-+|+. +.+..|+..++.. ..............
T Consensus 478 --~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~---------g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~ 543 (795)
T 4a2l_A 478 --PEQRSFTTIEKEKDGTPVVSKQITTLFRDSH---------KRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKL 543 (795)
T ss_dssp --TTTTEEEECCBCTTCCBCCCCCEEEEEECTT---------CCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGS
T ss_pred --CCCCeEEEccccccccccCCceEEEEEECCC---------CCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCC
Confidence 334444333221 11234555544332 33444444 5688888765432 10000000001111
Q ss_pred eeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeecc--c-cCceEEEEEeeeCCCEEEEEc
Q 001391 523 QLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS--C-FGARIMCLDASFEDEVLFCGD 599 (1088)
Q Consensus 523 ~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~--~-h~~~It~l~~spdg~~LatGs 599 (1088)
.+.. .+...+|++.++... -+..||..... + . .+.. + ....|.++...++|++.+.+
T Consensus 544 ~i~~--i~~d~~g~lWigT~~--Gl~~~d~~~~~----~--------~---~~~~~~gl~~~~i~~i~~d~~g~lWi~t- 603 (795)
T 4a2l_A 544 FTNC--IYEASNGIIWVGTRE--GFYCFNEKDKQ----I--------K---RYNTTNGLPNNVVYGILEDSFGRLWLST- 603 (795)
T ss_dssp CEEE--EEECTTSCEEEEESS--CEEEEETTTTE----E--------E---EECGGGTCSCSCEEEEEECTTSCEEEEE-
T ss_pred eeEE--EEECCCCCEEEEeCC--CceeECCCCCc----E--------E---EeCCCCCCchhheEEEEECCCCCEEEEc-
Confidence 1222 235567887765543 47778865331 1 1 1111 1 13458888888888877666
Q ss_pred CCCcEEEEeCCc
Q 001391 600 LRGNLVLFPLLR 611 (1088)
Q Consensus 600 ~dg~I~Iw~~~~ 611 (1088)
++-|..|+..+
T Consensus 604 -~~Gl~~~~~~~ 614 (795)
T 4a2l_A 604 -NRGISCFNPET 614 (795)
T ss_dssp -TTEEEEEETTT
T ss_pred -CCceEEEcCCC
Confidence 34577777654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-07 Score=102.80 Aligned_cols=270 Identities=7% Similarity=-0.121 Sum_probs=165.5
Q ss_pred CCEEEEEe--C-C---eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE----------CCCE
Q 001391 35 LPFLLAGS--G-S---QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKR 98 (1088)
Q Consensus 35 ~~~laag~--d-~---~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----------gd~~ 98 (1088)
++++.+.. + . +|.+||..+++.+.++..... - +++++ |||+ .+.++. .++.
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~--p-~i~~s-------pDg~---~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--P-NPVAA-------HSGS---EFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC--C-CeEEC-------CCCC---EEEEEeccccccccCCCCCe
Confidence 55555543 2 2 899999999999888775332 3 99999 8883 344442 2578
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCce
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSI 169 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~ 169 (1088)
|.+||..+. +.+..+.- +...-..++|+| ||++|+++.. ++.|.++| .+++.
T Consensus 99 v~viD~~t~---------------~~~~~i~~~~~~~~~~g~~p~~~~~sp---DG~~l~v~n~~~~~~v~viD-~t~~~ 159 (373)
T 2mad_H 99 VEVFDPVTF---------------LPIADIELPDAPRFDVGPYSWMNANTP---NNADLLFFQFAAGPAVGLVV-QGGSS 159 (373)
T ss_pred EEEEECCCC---------------cEEEEEECCCccccccCCCccceEECC---CCCEEEEEecCCCCeEEEEE-CCCCE
Confidence 999998742 22222211 012345899999 9999998864 58899999 99998
Q ss_pred EEE-eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 170 ILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 170 ~~~-~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
+.+ +..+.. . .+. ......+++.+.||.+.++|. +.+..... ....
T Consensus 160 ~~~~i~~~~~-~----~~~--~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~-------------------------~~~~ 206 (373)
T 2mad_H 160 DDQLLSSPTC-Y----HIH--PGAPSTFYLLCAQGGLAKTDH-AGGAAGAG-------------------------LVGA 206 (373)
T ss_pred EeEEcCCCce-E----EEE--eCCCceEEEEcCCCCEEEEEC-CCcEEEEE-------------------------eccc
Confidence 888 654432 1 111 122345566778999999987 33221100 0000
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--------cCcceEEEEEC--C
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--------HNARVWDCCLT--D 318 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--------h~~~I~~v~~~--~ 318 (1088)
. +.+.........+.+++..++..+..+.+.+.|+..... ..+..+.+.. .......+.++ +
T Consensus 207 ~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~------~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 207 M--LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred c--ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc------eEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 0 111111122345667666555555778899999875422 1111001100 11223345666 4
Q ss_pred CEEEEEeC----------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe-CCCCEEEEEcCC
Q 001391 319 SFIITAGE----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 319 ~~l~sg~~----------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~-~Dg~I~iwd~~~ 379 (1088)
..++.+.. ++.|.+.|. +++.+..+.... ..++++|+|||+ +++++. .++.|.++|..+
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 55555432 357999999 677778875433 478999999999 788877 589999999954
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-08 Score=107.72 Aligned_cols=272 Identities=10% Similarity=0.012 Sum_probs=172.3
Q ss_pred EEEeccCCCCCCCCEEEEEe------CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE--
Q 001391 23 LCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-- 94 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~------d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-- 94 (1088)
.... |+ ++.+.+.. ++.|.++|..+++.+.++..... . + ++++ |||+ .+.++.
T Consensus 38 ~~~~--pd----~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~s-------pDG~---~lyVan~~ 98 (386)
T 3sjl_D 38 EAPA--PD----ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVA-------DDGS---FIAHASTV 98 (386)
T ss_dssp CCCC--CC----TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEEC-------TTSS---CEEEEEEE
T ss_pred eccC--CC----CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEEC-------CCCC---EEEEEccc
Confidence 4445 77 55555543 46999999999999999987444 3 5 9999 8884 444443
Q ss_pred --------CCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEEc--CC
Q 001391 95 --------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DN 157 (1088)
Q Consensus 95 --------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs~--Dg 157 (1088)
.++.|.+||..+. +.+..+.- ....-..++|+| ||++|+++.. ++
T Consensus 99 ~~r~~~G~~~~~VsviD~~t~---------------~v~~~I~v~~g~r~~~g~~P~~~a~sp---DGk~lyVan~~~~~ 160 (386)
T 3sjl_D 99 FSRIARGERTDYVEVFDPVTL---------------LPTADIELPDAPRFLVGTYPWMTSLTP---DGKTLLFYQFSPAP 160 (386)
T ss_dssp EEETTEEEEEEEEEEECTTTC---------------CEEEEEEETTCCCCCBSCCGGGEEECT---TSSEEEEEECSSSC
T ss_pred ccccccCCCCCEEEEEECCCC---------------eEEEEEECCCccccccCCCCceEEEcC---CCCEEEEEEcCCCC
Confidence 2578999998853 33333321 112456799999 9999888763 68
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
.|.++|+.+++.+.++..+....++. .....+++.+.||.+.+.++.+.
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~~~~~P-------~g~~~~~~~~~DG~~~~v~~~~~------------------------ 209 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDCYHIFP-------TAPDTFFMHCRDGSLAKVAFGTE------------------------ 209 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEE-------EETTEEEEEETTSCEEEEECCSS------------------------
T ss_pred eEEEEECCCCcEEEEEECCCcceeec-------CCCceeEEECCCCCEEEEECCCC------------------------
Confidence 99999999999999886554222221 23456678888999999998721
Q ss_pred EecccccceeeeEEEeCC----CCCEE-EEEEc-CCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee------
Q 001391 238 KLQDQQHTAVNLFRLVGH----EGSIF-RIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY------ 305 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~gh----~~~V~-~v~~s-p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~------ 305 (1088)
++.......+ ...++ ...|. ++|+++. .+.++.|.+.|+.+... +.+.+..+.
T Consensus 210 --------g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~------~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 210 --------GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA------KFLPAVEALTEAERA 274 (386)
T ss_dssp --------SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC------EECCCEESSCHHHHH
T ss_pred --------CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc------eeecceecccccccc
Confidence 1111100001 12222 13554 5665444 66689999999976532 222211100
Q ss_pred -c-cCcceEEEEEC--CCEEEEEeC----------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEE-eC
Q 001391 306 -G-HNARVWDCCLT--DSFIITAGE----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA-GF 368 (1088)
Q Consensus 306 -~-h~~~I~~v~~~--~~~l~sg~~----------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg-~~ 368 (1088)
+ .......++++ ++.++.... ...|.+.|+ +++.+..+..-. .+++|++++|++ +|++. ..
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETT
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCC
Confidence 0 11122234555 455544432 246889999 788888876543 589999999996 66665 45
Q ss_pred CCCEEEEEcCC
Q 001391 369 DSAIKVHQFQA 379 (1088)
Q Consensus 369 Dg~I~iwd~~~ 379 (1088)
++.|.++|..+
T Consensus 353 ~~~VsViD~~t 363 (386)
T 3sjl_D 353 DKTLYIHDAES 363 (386)
T ss_dssp TTEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 89999999854
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=125.06 Aligned_cols=201 Identities=9% Similarity=-0.005 Sum_probs=130.9
Q ss_pred cCCCCcEEEEEEecccCCCCEEEE-----EEcCCcEEEEEcCCCceE-EEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAI-----GCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~las-----gs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
.+|...+.+++|+| ||++||. |+.+.+|++||+.+++.+ ........ ..++.+ ++|+..|+.++.+
T Consensus 117 ~~~~~~~~~~~~SP---DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~--~~~~~w---spDg~~l~~~~~d 188 (695)
T 2bkl_A 117 KDGTVSLGTWAVSW---DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGK--YATPKW---TPDSKGFYYEWLP 188 (695)
T ss_dssp SSSCEEEEEEEECT---TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCT--TCCCEE---CTTSSEEEEEECC
T ss_pred cCCCEEEEEEEECC---CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccc--ccceEE---ecCCCEEEEEEec
Confidence 35666899999999 9999883 444578999999998764 21111111 022333 6889999988877
Q ss_pred Ce-------------EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC
Q 001391 203 NE-------------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1088)
Q Consensus 203 g~-------------I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~ 269 (1088)
.. |++|++.+... ....+.....|...+..+.|+|||+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~-----------------------------~~~lv~~~~~~~~~~~~~~~SpDG~ 239 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPS-----------------------------KDTVVHERTGDPTTFLQSDLSRDGK 239 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGG-----------------------------GCEEEECCCCCTTCEEEEEECTTSC
T ss_pred CCCCCccccCCCCCEEEEEECCCCch-----------------------------hceEEEecCCCCEEEEEEEECCCCC
Confidence 65 99999872110 1123333345667899999999999
Q ss_pred EEEEEECCC----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEe---CCCcEEEEcC-CCce-
Q 001391 270 KLVSVSDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG---EDCTCRVWGS-DGKQ- 339 (1088)
Q Consensus 270 ~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~---~Dg~i~vWd~-~~~~- 339 (1088)
+|+.++.++ .|++|+..++.. . .+..+...+....+. +.++++.. .++.|.+|++ +++.
T Consensus 240 ~l~~~~~~~~~~~~l~~~~~~~~~~------~-----~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 240 YLFVYILRGWSENDVYWKRPGEKDF------R-----LLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp CEEEEEEETTTEEEEEEECTTCSSC------E-----EEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred EEEEEEeCCCCceEEEEEcCCCCce------E-----EeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 998877665 566665543321 1 344444455555555 45444443 2588999999 4432
Q ss_pred -eEEEcccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 340 -LKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 340 -~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
...+..+. ...+..++++ ++.++++...|+..++|.++
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 24443332 3358888888 67788999999999998763
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5.1e-08 Score=105.17 Aligned_cols=234 Identities=6% Similarity=-0.049 Sum_probs=152.3
Q ss_pred eeEEEEEeccCCCCCCCCEEE-EEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 19 EISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~la-ag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
...+++++ |+ +++.+ +.. ++.|.+||..++... .+.......+.+++++ +++ .++++..+
T Consensus 25 ~p~~i~~~--~~----g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~-------~~g----~l~v~~~~ 86 (270)
T 1rwi_B 25 SPSGVAVD--SA----GNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVD-------GAG----TVYVTDFN 86 (270)
T ss_dssp CEEEEEEC--TT----CCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEEC-------TTC----CEEEEETT
T ss_pred CccceEEC--CC----CCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEEC-------CCC----CEEEEcCC
Confidence 56789999 88 77776 534 589999997665432 2222222357889998 776 55555558
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
+.|.+|+..... ...+. .....+.++++.| ++.++++...++.|.+|+..+.........
T Consensus 87 ~~i~~~d~~~~~----------------~~~~~~~~~~~p~~i~~~~---~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~ 147 (270)
T 1rwi_B 87 NRVVTLAAGSNN----------------QTVLPFDGLNYPEGLAVDT---QGAVYVADRGNNRVVKLAAGSKTQTVLPFT 147 (270)
T ss_dssp TEEEEECTTCSC----------------CEECCCCSCSSEEEEEECT---TCCEEEEEGGGTEEEEECTTCCSCEECCCC
T ss_pred CEEEEEeCCCce----------------EeeeecCCcCCCcceEECC---CCCEEEEECCCCEEEEEECCCceeEeeccc
Confidence 899999876322 11111 2235789999999 888777777788999997655543322111
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
. ......+++ ++++.++++...++.|.+|+.. ..........+
T Consensus 148 ~-~~~p~~i~~---~~~g~l~v~~~~~~~i~~~~~~---------------------------------~~~~~~~~~~~ 190 (270)
T 1rwi_B 148 G-LNDPDGVAV---DNSGNVYVTDTDNNRVVKLEAE---------------------------------SNNQVVLPFTD 190 (270)
T ss_dssp S-CCSCCCEEE---CTTCCEEEEEGGGTEEEEECTT---------------------------------TCCEEECCCSS
T ss_pred c-CCCceeEEE---eCCCCEEEEECCCCEEEEEecC---------------------------------CCceEeecccC
Confidence 1 111223443 4677777777778899999987 22211112233
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEE
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vW 333 (1088)
...+.+++++++|..+++...++.|.+|+...... .. ....+...+.+++++ +.++++...++.|+++
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~------~~----~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS------TV----LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC------EE----CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc------ee----eccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 36789999999998888887888999999876422 10 122333568899997 5778888889999999
Q ss_pred cCC
Q 001391 334 GSD 336 (1088)
Q Consensus 334 d~~ 336 (1088)
+..
T Consensus 261 ~~~ 263 (270)
T 1rwi_B 261 TSL 263 (270)
T ss_dssp CCC
T ss_pred cCC
Confidence 984
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.1e-05 Score=94.79 Aligned_cols=456 Identities=10% Similarity=-0.005 Sum_probs=244.4
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcc---eEEEEecccccccCCCccceeeEEEEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR---LHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~---V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
..|.+|... ++ +.+-+ |+.+-|..||..+++.. .+....... |.++... ++| .+.+..
T Consensus 88 n~I~~i~~d--~~----g~lWi-gT~~Gl~~yd~~~~~f~-~~~~~~~~~~~~i~~i~~d-------~~g----~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTD--SQ----GRVWI-GTRDGLSRYDEEKDIFQ-NFFYEKNGKHLQVNGIEEI-------SPE----QLLIST 148 (795)
T ss_dssp SCEEEEEEC--TT----SCEEE-EESSCEEEEETTTTEEE-EECCEETTEECCCCEEEEE-------ETT----EEEEEE
T ss_pred cceeEEEEC--CC----CCEEE-EeCCchheeCCCCCeEE-eccccccCCCceEEEEEEC-------CCC----CEEEEE
Confidence 458888888 76 55554 44445899998877643 232211111 7777766 565 555555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC-CCc-EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-SHW-VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~-I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
. +.+..|+..... +... ..++ ... |.++...+ ++.+. .|+.++-|..|+..+++....
T Consensus 149 ~-~gl~~~~~~~~~-------------~~~~--~~~~~~~~~i~~i~~d~---~g~lw-igt~~~Gl~~~~~~~~~~~~~ 208 (795)
T 4a2l_A 149 P-EGLIMFDIKESK-------------FIDD--SFSTAMHKTIASTLYRQ---GDQIY-IGTSTDGLYTYSITQKTFEKV 208 (795)
T ss_dssp T-TEEEEEETTTTE-------------EECS--SSCHHHHTCCEEEEEEE---TTEEE-EEESSSCEEEEETTTCCEEEC
T ss_pred C-CceEEEECCCCE-------------EEec--cCCCCCCcceEEEEECC---CCCEE-EEECCCCEEEEeCCCCeEEEe
Confidence 4 668888865321 1111 0111 123 88888877 77644 466655688999877664332
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
........+.++.. ..++. +..|+.++.|.+||..+ ... ..+
T Consensus 209 ~~~~~~~~i~~i~~---d~~g~-lwigt~~~Gl~~~~~~~---------------------------------~~~-~~~ 250 (795)
T 4a2l_A 209 IPILGTKQIQAILQ---QSPTR-IWVATEGAGLFLINPKT---------------------------------KEI-KNY 250 (795)
T ss_dssp C----CCCEEEEEE---EETTE-EEEEEBSSCEEEEETTT---------------------------------TEE-EEE
T ss_pred cCCCCCCeeEEEEE---cCCCC-EEEEECCCCeEEEeCCC---------------------------------CeE-EEe
Confidence 11111223444332 23444 44455555588888761 111 111
Q ss_pred e--------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece---eeeccCcceEEEEEC-CCE
Q 001391 253 V--------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS---VLYGHNARVWDCCLT-DSF 320 (1088)
Q Consensus 253 ~--------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~---~~~~h~~~I~~v~~~-~~~ 320 (1088)
. -....|.++...++|...+.. .+ -|.+||..+... ..+... ...-....|.++... ...
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~------~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 322 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSF------ASYSSNPVENGSLSQRSVRSIFMDSQGG 322 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEE------EEECCCTTSTTSCSSSCEEEEEECTTSC
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeE------EEEecCCCCCCCCCCCcEEEEEEeCCcC
Confidence 1 023569999999888865544 44 488899776432 111100 001123568898887 556
Q ss_pred EEEEeCCCcEEEEcCCCceeEEEcc------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCcccccc
Q 001391 321 IITAGEDCTCRVWGSDGKQLKMIKE------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEF 394 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~~~~~~~~~~~------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 394 (1088)
|-.|+.++-|..|+........+.. -....|.++...++|.+ -.|+.++-|..|+........+.
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~-------- 393 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYT-------- 393 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEEC--------
T ss_pred EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEe--------
Confidence 7778888889999874444444322 11235999999988874 45777777888887543211110
Q ss_pred CCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEecCCeEEEEEeccCCcceeEEeeee---cCCcceEEE
Q 001391 395 NGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQV---SEGMPIICM 470 (1088)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t~~g~i~~~~~~~~~~~~~~~~~~~---~~~~~i~~l 470 (1088)
...... . .......|.+++..+++. +.+++..+.++.++.. +.++...... -....+.++
T Consensus 394 ----------~~~~~~--~-~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~---~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 394 ----------LQEDES--A-RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN---SGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp ----------CC---------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT---TCCEEEECTTTSCCSCSCEEEE
T ss_pred ----------cCCCCc--c-cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC---CCcEEEeecCCCCcCCCeeEEE
Confidence 000000 0 000124689999988898 9999987778755432 2333222211 112346665
Q ss_pred ecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeee-e-ccccceeeeEEEeecCCCeEEEEECCCCeEE
Q 001391 471 DLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW-S-AGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (1088)
Q Consensus 471 ~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~ 548 (1088)
..... ..+-+|+. +.+.+|+..++..... .... . ......+.. .+...+|++.+... +-+.
T Consensus 458 ~~d~~---------g~lwigt~-~Gl~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~--i~~d~~g~lWigt~--~Gl~ 520 (795)
T 4a2l_A 458 LPDGE---------GNLWLGTL-SALVRFNPEQRSFTTI---EKEKDGTPVVSKQITT--LFRDSHKRLWIGGE--EGLS 520 (795)
T ss_dssp EECSS---------SCEEEEES-SCEEEEETTTTEEEEC---CBCTTCCBCCCCCEEE--EEECTTCCEEEEES--SCEE
T ss_pred EECCC---------CCEEEEec-CceeEEeCCCCeEEEc---cccccccccCCceEEE--EEECCCCCEEEEeC--CceE
Confidence 54332 33444454 4577787654332110 0000 0 000111222 23556777776554 4477
Q ss_pred EEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 549 vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
.|+...... .. ........-....|.++...++|++.+... . -+..|+..+.
T Consensus 521 ~~~~~~~~~--~~--------~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 521 VFKQEGLDI--QK--------ASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp EEEEETTEE--EE--------CCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred EEeCCCCeE--EE--------ecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence 788754321 00 000000012345688998888898776544 3 6788886643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=125.28 Aligned_cols=248 Identities=6% Similarity=-0.096 Sum_probs=151.8
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe------CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~------d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.+.+++|| || +++||.+. +.+|++||+.+|+.+..-. .......+++|+ |||+ .++.
T Consensus 122 ~~~~~~~S--PD----G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~ws-------pDg~---~l~~ 184 (695)
T 2bkl_A 122 SLGTWAVS--WD----GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWT-------PDSK---GFYY 184 (695)
T ss_dssp EEEEEEEC--TT----SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEEC-------TTSS---EEEE
T ss_pred EEEEEEEC--CC----CCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEe-------cCCC---EEEE
Confidence 68899999 99 89888533 2689999999998751111 122123678999 8883 4455
Q ss_pred EECCCE-------------EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC--
Q 001391 93 LFGEKR-------------VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-- 157 (1088)
Q Consensus 93 ~~gd~~-------------v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg-- 157 (1088)
+..+.. |++|++.+... ...++.....|...+.++.|+| ||++|+..+.++
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-----------~~~lv~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPS-----------KDTVVHERTGDPTTFLQSDLSR---DGKYLFVYILRGWS 250 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGG-----------GCEEEECCCCCTTCEEEEEECT---TSCCEEEEEEETTT
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCch-----------hceEEEecCCCCEEEEEEEECC---CCCEEEEEEeCCCC
Confidence 555554 99999875430 1235555566778899999999 999888877666
Q ss_pred --cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe---cCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 158 --SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT---IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 158 --~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~---~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
.|.+|+..+++. ..+..+.....+.+ + +++.+++... .++.|.+||+.
T Consensus 251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~-~----~~g~l~~~s~~~~~~~~l~~~d~~--------------------- 303 (695)
T 2bkl_A 251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVH-A----WKDRFYVLTDEGAPRQRVFEVDPA--------------------- 303 (695)
T ss_dssp EEEEEEECTTCSSC-EEEEECSSCCEEEE-E----ETTEEEEEECTTCTTCEEEEEBTT---------------------
T ss_pred ceEEEEEcCCCCce-EEeecCCCceEEEE-e----cCCcEEEEECCCCCCCEEEEEeCC---------------------
Confidence 667776655543 33333333222222 1 3444444443 25789999986
Q ss_pred CCceeEecccccceee--eEEEe-CC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-
Q 001391 233 DFKCFKLQDQQHTAVN--LFRLV-GH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH- 307 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~--~~~~~-gh-~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h- 307 (1088)
++.. ...+. .+ ...+..++|+ ++..+++...|+..+||.+.... .... .+..+
T Consensus 304 ------------~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-------~~~~--~l~~~~ 361 (695)
T 2bkl_A 304 ------------KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG-------KPVR--TVQLPG 361 (695)
T ss_dssp ------------BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-------CEEE--ECCCSS
T ss_pred ------------CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-------CeeE--EecCCC
Confidence 2221 22333 33 4567888888 67788899999999988765311 1122 23333
Q ss_pred CcceEEEEEC--CCEEE-EEe---CCCcEEEEcCCCceeEEEccc
Q 001391 308 NARVWDCCLT--DSFII-TAG---EDCTCRVWGSDGKQLKMIKEH 346 (1088)
Q Consensus 308 ~~~I~~v~~~--~~~l~-sg~---~Dg~i~vWd~~~~~~~~~~~h 346 (1088)
...+..+.++ +..++ +.+ ..+++++||+.......+..+
T Consensus 362 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~ 406 (695)
T 2bkl_A 362 VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKV 406 (695)
T ss_dssp SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecC
Confidence 4556666665 34444 332 347899999843334445443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.90 E-value=0.00072 Score=84.78 Aligned_cols=470 Identities=10% Similarity=0.030 Sum_probs=242.9
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEE-e-----eeCCcceEEEEecccccccCC--Cccceee
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF-Q-----VFHGIRLHGISCNFINCTEGS--VSTRVTF 89 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~-~-----~~~~~~V~~i~~s~~~~~~~~--d~~~~~~ 89 (1088)
.|.+|... ++ ++.|-.|+ ++-|..||..+++..... . ......|.+|... . ++ .
T Consensus 67 ~I~~i~~d--~~----g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d-------~~~~g----~ 129 (781)
T 3v9f_A 67 ELNEVYTD--PV----QPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSS-------VQAGK----G 129 (781)
T ss_dssp CEEEEEEC--SS----SSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEEC-------SSTTS----E
T ss_pred ccceEEEc--CC----CCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEec-------CccCC----C
Confidence 48888877 66 66244455 447999999887643221 1 0012247777765 5 55 5
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec--c-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--P-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
+.+...++.+..++..... ++..... . .....|.++...+ ++.+ ..|+.++-+..||..+
T Consensus 130 lwi~t~~~gl~~~~~~~~~-------------~~~~~~~~~~~l~~~~i~~i~~d~---~g~l-wigt~~~Gl~~~~~~~ 192 (781)
T 3v9f_A 130 LWVCTYYRGIEYLDIATGK-------------FTHYNKSTVPALPSEQTWTATEAE---DGKL-YIGHVEGGLSILSLND 192 (781)
T ss_dssp EEEEESSSCEEEEETTTTE-------------EEEESTTTCTTCSCCCEEEEEEEE---TTEE-EEEETTTEEEEEETTT
T ss_pred EEEEECCCCeeEEECCCCe-------------EEeeccCcccCCCccceEEEEECC---CCCE-EEEecCCCeEEEcCCC
Confidence 5555535567778765321 1111100 0 1235688888876 6654 4566665688899877
Q ss_pred CceEEEeccC------CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEec
Q 001391 167 SSIILEVHSP------ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1088)
Q Consensus 167 ~~~~~~~~~~------~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 240 (1088)
++...-...+ ....+.++.. +.++.+.+ |+.. .|.+||..+.+... +
T Consensus 193 ~~~~~~~~~~~~~~~l~~~~i~~i~~---d~~g~lwi-gt~~-Gl~~~d~~~~~~~~----------------------~ 245 (781)
T 3v9f_A 193 KSVKHFVHDPQNPNSLPGNDVRCIYK---DTNGNIWI-GTSK-GLALFNANTETFTN----------------------F 245 (781)
T ss_dssp TEEEEECC--------CCSSEEEEEE---CTTCCEEE-EETT-EEEEEETTTTEEEC-----------------------
T ss_pred CceEeeecCCCCcccCCCCceeEEEE---cCCCCEEE-EeCC-cHheECCCCCcEEE----------------------E
Confidence 6543221111 0122444432 34554444 4444 68888876211000 0
Q ss_pred ccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCC--ceeeec--eeeeccCcceEEEEE
Q 001391 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS--IEEVGS--SVLYGHNARVWDCCL 316 (1088)
Q Consensus 241 ~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~i~~--~~~~~h~~~I~~v~~ 316 (1088)
.. ... ....-....|.++...++|...+ |+..+-|.++|..+.....-.. ...+.. .........|.++..
T Consensus 246 ~~--~~~--~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 246 HN--NPG--NIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp --------------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred Ec--CCC--ccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 00 000 00001245689999888876544 5554457888887653200000 000000 000113456888888
Q ss_pred C-CCEEEEEeCCCcEEEEcCCCceeEEEcc---------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCccc
Q 001391 317 T-DSFIITAGEDCTCRVWGSDGKQLKMIKE---------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLE 386 (1088)
Q Consensus 317 ~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~---------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~ 386 (1088)
. ...|-.|..++-|..++........+.. -....|.++...+++.+ ..|+.++-+..++..+.....+.
T Consensus 321 D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~ 399 (781)
T 3v9f_A 321 DSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNK 399 (781)
T ss_dssp CSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-
T ss_pred eCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEcc
Confidence 7 4567778878888899885444444321 11235999999888874 45565666888887532111100
Q ss_pred CCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeee-ecCCc
Q 001391 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ-VSEGM 465 (1088)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~-~~~~~ 465 (1088)
.+. ......|.++...+++.+.+++..+.++.+ +..+.++..... .....
T Consensus 400 ------------------~~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~---~~~~~~~~~~~~~~~~~~ 450 (781)
T 3v9f_A 400 ------------------ENR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYY---NTRLKKFQIIELEKNELL 450 (781)
T ss_dssp ------------------------------CCCSBEEEEEECTTSCEEEEETTEEEEEE---CSSSCEEEECCSTTTCCC
T ss_pred ------------------CCC--------CCCCcceEEEEECCCCCEEEEeccCCEEEE---cCCCCcEEEeccCCCCCC
Confidence 000 012246889998888999999987777744 333334433321 11234
Q ss_pred ceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCC
Q 001391 466 PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKG 545 (1088)
Q Consensus 466 ~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg 545 (1088)
.+.++..... ..+-+|+. +.+..|+..++......... ........+.. .+...+|.+.+.....|
T Consensus 451 ~v~~i~~d~~---------g~lwigt~-~Gl~~~~~~~~~~~~~~~~~--~~~~~~~~i~~--i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 451 DVRVFYEDKN---------KKIWIGTH-AGVFVIDLASKKVIHHYDTS--NSQLLENFVRS--IAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp CEEEEEECTT---------SEEEEEET-TEEEEEESSSSSCCEEECTT--TSSCSCSCEEE--EEECTTCCEEEEESSSC
T ss_pred eEEEEEECCC---------CCEEEEEC-CceEEEeCCCCeEEecccCc--ccccccceeEE--EEEcCCCCEEEEEcCCC
Confidence 5666554332 34555555 55777876654432100000 00000111222 23556777776554455
Q ss_pred eEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 546 ~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
+..|+..... . ........-....|.++...++|.+.+... +|-|..|+..+.
T Consensus 517 -l~~~~~~~~~----~--------~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 517 -VGIYTPDMQL----V--------RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp -EEEECTTCCE----E--------EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred -EEEEeCCCCe----E--------EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 6667765321 0 000000001245688998888888776554 676588876543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-07 Score=106.34 Aligned_cols=261 Identities=9% Similarity=-0.024 Sum_probs=166.8
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE----------CCCEEEEEEeccCCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----------gd~~v~iw~l~~~~~~~~~ 113 (1088)
+.|.++|..+++.+.++..... . +++++ ||++ .++++. .++.|.++|..+.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~-P--gia~S-------pDgk---~lyVan~~~~~~~~G~~~~~VsviD~~t~------ 159 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL-P--HPVAA-------EDGS---FFAQASTVFERIARGKRTDYVEVFDPVTF------ 159 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-C--EEEEC-------TTSS---CEEEEEEEEEETTEEEEEEEEEEECTTTC------
T ss_pred CeEEEEECCCCEEEEEEECCCC-C--ceEEC-------CCCC---EEEEEeccccccccCCCCCEEEEEECCCC------
Confidence 6999999999999999997543 3 89999 8884 444443 3678999998753
Q ss_pred CCCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCceEEEeccCCceeEEEE
Q 001391 114 YQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSM 184 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~ 184 (1088)
+.+..+.- .......++|+| |+++|+++.. ++.|.+.|+.+++.+.++..+....++.
T Consensus 160 ---------~vv~~I~v~g~~r~~~g~~P~~~~~sp---DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p- 226 (426)
T 3c75_H 160 ---------LPIADIELPDAPRFLVGTYQWMNALTP---DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFP- 226 (426)
T ss_dssp ---------CEEEEEEETTCCCCCBSCCGGGSEECT---TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE-
T ss_pred ---------cEEEEEECCCccccccCCCcceEEEcC---CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeecc-
Confidence 33333321 112346789999 9999998864 6899999999999998887543211111
Q ss_pred eeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCE-EEEE
Q 001391 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI-FRIE 263 (1088)
Q Consensus 185 ~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V-~~v~ 263 (1088)
.....+++.+.||.+.+.+..+++.... ....+.-....+ ..+.
T Consensus 227 ------~g~~~~v~~~~dG~~~~V~~~~~~v~~~-----------------------------~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 227 ------ASPTVFYMNCRDGSLARVDFADGETKVT-----------------------------NTEVFHTEDELLINHPA 271 (426)
T ss_dssp ------EETTEEEEEETTSSEEEEECCTTCCEEE-----------------------------ECCCCSCTTSCBCSCCE
T ss_pred ------CCCcEEEEEcCCCCEEEEECCCCcEEEE-----------------------------eeeeeccCCCceeeEee
Confidence 1124556666788888777751111100 000011111111 1356
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee-----c---cCcceEEEEEC--CCEEEEEeC-------
Q 001391 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----G---HNARVWDCCLT--DSFIITAGE------- 326 (1088)
Q Consensus 264 ~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~-----~---h~~~I~~v~~~--~~~l~sg~~------- 326 (1088)
|.++++.++..+..+.|.+.|...... ..+..+.+. . .......++++ +..++....
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~------~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth 345 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGA------TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH 345 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCE------EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCce------EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence 788988887778889999999876432 111100100 0 01111124565 455444432
Q ss_pred ---CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe-CCCCEEEEEcCC
Q 001391 327 ---DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 327 ---Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~-~Dg~I~iwd~~~ 379 (1088)
++.|.+.|. +.+.+..+.... ..++++|+||++ ++++.. .++.|.++|..+
T Consensus 346 k~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred cCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 357999999 788888876443 378999999999 888888 599999999954
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-07 Score=115.77 Aligned_cols=245 Identities=9% Similarity=0.009 Sum_probs=154.3
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeC------CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d------~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.+.+++|| || +++||.+.+ .+|++||+.+|+.+.. .. ....+.+++|+ || + .++.
T Consensus 164 ~~~~~~~S--PD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~-~~~~~~~~~ws-------pD-~---~l~~ 224 (741)
T 1yr2_A 164 ALDAWAAS--DD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL-KWVKFSGLAWL-------GN-D---ALLY 224 (741)
T ss_dssp EEEEEEEC--TT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE-EEEESCCCEES-------TT-S---EEEE
T ss_pred EEEeEEEC--CC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC-CCceeccEEEE-------CC-C---EEEE
Confidence 68899999 99 898888653 3699999999987653 21 22234678898 77 4 5666
Q ss_pred EECCC--------------EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-
Q 001391 93 LFGEK--------------RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN- 157 (1088)
Q Consensus 93 ~~gd~--------------~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg- 157 (1088)
+..++ .|.+|++.+.. ....++.....+...+..+.|+| ||++|+..+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-----------~~~~lv~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~~ 290 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQ-----------SADQPVFATPELPKRGHGASVSS---DGRWVVITSSEGT 290 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCG-----------GGCEEEECCTTCTTCEEEEEECT---TSCEEEEEEECTT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCc-----------hhCEEEeccCCCCeEEEEEEECC---CCCEEEEEEEccC
Confidence 55443 37888876432 01134444445556799999999 999888877544
Q ss_pred ----cEEEEEcCCC--ceEEEeccCCceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEeccCccccCCCCCCCccC
Q 001391 158 ----SIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 158 ----~V~iWd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
.|.+||+.++ +....+..+.....+.+ ++++..|+..+. ++.|.+||+.
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-----~~dg~~l~~~s~~~~~~~~l~~~d~~---------------- 349 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-----DGVGDQLWFVSGDGAPLKKIVRVDLS---------------- 349 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-----EEETTEEEEEECTTCTTCEEEEEECS----------------
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCceEEEE-----eccCCEEEEEECCCCCCCEEEEEeCC----------------
Confidence 8999999877 31344443433322222 256777776655 3458888887
Q ss_pred CCCCCCCceeEecccccce--eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 228 HGSSSDFKCFKLQDQQHTA--VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~--~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
.. .....+..+...+..+.+. ++..+++...|+..+||.+... ..... .+.
T Consensus 350 -----------------~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-------g~~~~--~l~ 402 (741)
T 1yr2_A 350 -----------------GSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD-------GKPAG--AVS 402 (741)
T ss_dssp -----------------SSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT-------SCEEE--ECB
T ss_pred -----------------CCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-------CCcee--ecc
Confidence 21 2223344555667778887 5667888899998888866521 11222 222
Q ss_pred -ccCcceEEEEEC--CC-EEEEEe---CCCcEEEEcCCCceeEEEc
Q 001391 306 -GHNARVWDCCLT--DS-FIITAG---EDCTCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 306 -~h~~~I~~v~~~--~~-~l~sg~---~Dg~i~vWd~~~~~~~~~~ 344 (1088)
.+...+..+.++ +. ++++.+ ..+++++||+.+.....++
T Consensus 403 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 403 LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS
T ss_pred CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 235667788876 33 443333 3478999998443344444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-06 Score=97.67 Aligned_cols=261 Identities=8% Similarity=-0.004 Sum_probs=156.3
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCC--------cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHG--------IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~--------~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~ 106 (1088)
..|.+++ ++.|..||.++|+.+.++..... ..+.+.-.. .++ .+++...++.|..+|..+
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~v~v~~~~g~l~a~d~~t 122 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-------SGG----HVYIGSEKAQVYALNTSD 122 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-------ETT----EEEEEETTSEEEEEETTT
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-------eCC----EEEEEcCCCEEEEEECCC
Confidence 4555555 68999999999999887775321 122221111 233 677777789999999875
Q ss_pred CCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE----E
Q 001391 107 ELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----Y 182 (1088)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~----~ 182 (1088)
.. ................+ .+..++.++.++.|..+|..+++.+.+......... .
T Consensus 123 G~---------------~~W~~~~~~~~~~~p~~-----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 182 (376)
T 3q7m_A 123 GT---------------VAWQTKVAGEALSRPVV-----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES 182 (376)
T ss_dssp CC---------------EEEEEECSSCCCSCCEE-----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC
T ss_pred CC---------------EEEEEeCCCceEcCCEE-----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC
Confidence 43 22122111111111122 234677888899999999999998877654322110 0
Q ss_pred EEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC-----
Q 001391 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG----- 257 (1088)
Q Consensus 183 s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~----- 257 (1088)
+.. ..+..++.++.++.|..+|.. +++.+........
T Consensus 183 ~~~-----~~~~~v~~g~~~g~l~~~d~~---------------------------------tG~~~w~~~~~~~~~~~~ 224 (376)
T 3q7m_A 183 APT-----TAFGAAVVGGDNGRVSAVLME---------------------------------QGQMIWQQRISQATGSTE 224 (376)
T ss_dssp CCE-----EETTEEEECCTTTEEEEEETT---------------------------------TCCEEEEEECCC------
T ss_pred CcE-----EECCEEEEEcCCCEEEEEECC---------------------------------CCcEEEEEecccCCCCcc
Confidence 111 123467778889999999987 3333322221100
Q ss_pred --CEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEE
Q 001391 258 --SIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (1088)
Q Consensus 258 --~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vW 333 (1088)
.+..+...| .+..+..++.++.+..+|..+++. +. ... ......+...+..++.++.++.+..+
T Consensus 225 ~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--------~w--~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~ 292 (376)
T 3q7m_A 225 IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--------MW--KRE--LGSVNDFIVDGNRIYLVDQNDRVMAL 292 (376)
T ss_dssp -----CCCCCCEEETTEEEEECTTSCEEEEETTTCCE--------EE--EEC--CCCEEEEEEETTEEEEEETTCCEEEE
T ss_pred cccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE--------Ee--ecc--CCCCCCceEECCEEEEEcCCCeEEEE
Confidence 000010111 246777888899999999988643 11 111 12244555568889999999999999
Q ss_pred cC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 334 d~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|. +|+.+..........+...... +..|+.++.+|.+.++|..+
T Consensus 293 d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 293 TIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred ECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCC
Confidence 98 8888777653222123333332 45788899999999999853
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-06 Score=94.92 Aligned_cols=241 Identities=9% Similarity=0.045 Sum_probs=150.8
Q ss_pred eeEEEEEeccCCCCCCCCEEEE-------Ee-CCeEEEEECCCCeeEEEEe----eeCCcceEEEEecccccccCCC-cc
Q 001391 19 EISALCFVHLPSHLSSLPFLLA-------GS-GSQVLLYDLEAGTLIRPFQ----VFHGIRLHGISCNFINCTEGSV-ST 85 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laa-------g~-d~~I~vwd~~tg~~~~~~~----~~~~~~V~~i~~s~~~~~~~~d-~~ 85 (1088)
...+++|+ ++ +.++++ +. ++.|.+||..+++...... .+. ..+.+++++ ++ +
T Consensus 19 ~~~~~~~~--~~----g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-~~~~~i~~~-------~~~g- 83 (314)
T 1pjx_A 19 GAEGPVFD--KN----GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG-GIPAGCQCD-------RDAN- 83 (314)
T ss_dssp TCEEEEEC--TT----SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE-CCEEEEEEC-------SSSS-
T ss_pred CccCceEC--CC----CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC-CCCceEEEe-------cCCC-
Confidence 35689999 88 777777 34 6899999998887643222 022 358999998 77 6
Q ss_pred ceeeEEEEECCCEEEEEEeccCCCCCCCCCCcccccccee-ee-ccC-CCCcEEEEEEecccCCCCEEEEEEcC------
Q 001391 86 RVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV-QS-LPR-LSHWVFDVCFLKVCNGNRSLAIGCSD------ 156 (1088)
Q Consensus 86 ~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~-~~-l~~-h~~~I~~v~f~p~~~d~~~lasgs~D------ 156 (1088)
.++++..++.|.+|+.+ .. ...+ .. ..+ ....+.++++.| ++++.++...+
T Consensus 84 ---~l~v~~~~~~l~~~d~~-g~-------------~~~~~~~~~~~~~~~~~~~i~~d~---~g~l~v~~~~~~~~~~~ 143 (314)
T 1pjx_A 84 ---QLFVADMRLGLLVVQTD-GT-------------FEEIAKKDSEGRRMQGCNDCAFDY---EGNLWITAPAGEVAPAD 143 (314)
T ss_dssp ---EEEEEETTTEEEEEETT-SC-------------EEECCSBCTTSCBCBCCCEEEECT---TSCEEEEECBCBCTTSC
T ss_pred ---cEEEEECCCCEEEEeCC-CC-------------EEEEEeccCCCccccCCcCEEECC---CCCEEEEecCccccccc
Confidence 66666666688888876 32 1111 11 111 224688999999 89877766554
Q ss_pred ---------CcEEEEEcCCCceEEEeccCCceeEEEEeee-cCCCCCcEE-EEEecCCeEEEEEecc-CccccCCCCCCC
Q 001391 157 ---------NSIRVWDISNSSIILEVHSPERCLLYSMKLW-GDNLEALRI-ASGTIYNEIIVWKVDW-EHVAPLLNSPEG 224 (1088)
Q Consensus 157 ---------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~-~~s~~~~~l-~sg~~dg~I~vwd~~~-~~~~~~~~~~~~ 224 (1088)
+.|..|+.. ++......... ....+++. ..++++..+ ++...++.|.+|+... ++..
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~--~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~-------- 212 (314)
T 1pjx_A 144 YTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ--FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE-------- 212 (314)
T ss_dssp CCBTTSSSCEEEEEECTT-SCEEEEEEEES--SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE--------
T ss_pred ccccccCCCCeEEEECCC-CCEEEeccCCC--CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc--------
Confidence 456667665 44332221111 12233331 012667554 4455678999999751 0000
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCC-CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
.......+.++. ..+..++++++|..+++...++.|.+||..+++. +. .
T Consensus 213 --------------------~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--------~~--~ 262 (314)
T 1pjx_A 213 --------------------NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--------KM--R 262 (314)
T ss_dssp --------------------EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--------SE--E
T ss_pred --------------------cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--------eE--E
Confidence 111233344454 6688999999999999888889999999875432 21 3
Q ss_pred eeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC
Q 001391 304 LYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS 335 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~ 335 (1088)
+..+...+.+++++ +. ++++...++.|..|+.
T Consensus 263 ~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 263 IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 34455678999997 45 4455556688999987
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-07 Score=114.65 Aligned_cols=236 Identities=10% Similarity=0.033 Sum_probs=150.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC----C--CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG----E--KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g----d--~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f 140 (1088)
.+.+++|| ||| .+|+... + ..|++||+..+. .+.. ..+...+..++|
T Consensus 164 ~~~~~~~S-------PDG----~~la~~~~~~G~e~~~i~v~dl~tg~---------------~~~~-~~~~~~~~~~~w 216 (741)
T 1yr2_A 164 ALDAWAAS-------DDG----RLLAYSVQDGGSDWRTVKFVGVADGK---------------PLAD-ELKWVKFSGLAW 216 (741)
T ss_dssp EEEEEEEC-------TTS----SEEEEEEEETTCSEEEEEEEETTTCC---------------EEEE-EEEEEESCCCEE
T ss_pred EEEeEEEC-------CCC----CEEEEEEcCCCCceEEEEEEECCCCC---------------CCCc-cCCCceeccEEE
Confidence 57889999 888 4454432 1 469999998643 1111 111112357899
Q ss_pred ecccCCCCEEEEEEcCCc--------------EEEEEcCCCce--EEEeccCCc-eeEEEEeeecCCCCCcEEEEEecCC
Q 001391 141 LKVCNGNRSLAIGCSDNS--------------IRVWDISNSSI--ILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 141 ~p~~~d~~~lasgs~Dg~--------------V~iWd~~~~~~--~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+| | +.|+.++.|+. |++|++.++.. ...+..+.. ....++.+ ++|+.+|+....++
T Consensus 217 sp---D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~---SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 217 LG---N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV---SSDGRWVVITSSEG 289 (741)
T ss_dssp ST---T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE---CTTSCEEEEEEECT
T ss_pred EC---C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE---CCCCCEEEEEEEcc
Confidence 99 9 88888876654 88999977652 222222221 12445544 78998887766543
Q ss_pred -----eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce-ee-eEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 204 -----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VN-LFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 204 -----~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~-~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
.|.+||+. ++ .. ...+..+...+.... +|+|+.|+..+.
T Consensus 290 ~~~~~~l~~~d~~---------------------------------~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 290 TDPVNTVHVARVT---------------------------------NGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp TCSCCEEEEEEEE---------------------------------TTEECCCEEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred CCCcceEEEEECC---------------------------------CCCCcccEEecCCCCceEEEE-eccCCEEEEEEC
Confidence 89999987 22 12 445555655555554 489998888776
Q ss_pred C----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC--CCceeEEEccc-CC
Q 001391 277 D----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS--DGKQLKMIKEH-IG 348 (1088)
Q Consensus 277 D----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h-~~ 348 (1088)
+ +.|.+||+.+.. .... .....+...+..+.+. +.++++...|+..++|.. +++....+..+ .+
T Consensus 336 ~~~~~~~l~~~d~~~~~-------~~~~-~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~ 407 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGST-------PRFD-TVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIG 407 (741)
T ss_dssp TTCTTCEEEEEECSSSS-------CEEE-EEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSC
T ss_pred CCCCCCEEEEEeCCCCc-------cccE-EEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCe
Confidence 4 459999987631 0111 1333444556677777 567788889998777765 57777777654 34
Q ss_pred CCeEEEEEcCCCCEEE-EEe---CCCCEEEEEcCC
Q 001391 349 RGIWRCLYDSLSSLLV-TAG---FDSAIKVHQFQA 379 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~-tg~---~Dg~I~iwd~~~ 379 (1088)
.|..+.++|+++.|+ +.+ ..++|.+||+.+
T Consensus 408 -~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 408 -SASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp -EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred -EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 588899999987555 222 347899999854
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-08 Score=110.62 Aligned_cols=170 Identities=8% Similarity=-0.001 Sum_probs=125.8
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-----------eEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----------IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-----------~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
.+..+++++ ...++++|+.++ +++|++.... ...... ... ++.+.| ++.+|+++ .+
T Consensus 39 ~~nlLais~---~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f-----d~~~L~v~-~~ 105 (388)
T 1xip_A 39 SLQNLDISN---SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF-----HGDQVLVS-TR 105 (388)
T ss_dssp CCBCEEEET---TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE-----ETTEEEEE-ES
T ss_pred cccEEEEcC---CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE-----CCCEEEEE-cC
Confidence 689999999 999999999875 6669975433 111222 223 667776 67888888 88
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
+.|++||+. ..........|+..+..+.+.+.. +++++.||.+.+
T Consensus 106 ~~l~v~dv~---------------------------------sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v 150 (388)
T 1xip_A 106 NALYSLDLE---------------------------------ELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSA 150 (388)
T ss_dssp SEEEEEESS---------------------------------STTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEE
T ss_pred CcEEEEEch---------------------------------hhhccCccceeecceeeEEecCCC--EEEEECCCCEEE
Confidence 999999997 222233445677778888876543 889999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCce---eEEE------c---ccCCCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQ---LKMI------K---EHIGRG 350 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~---~~~~------~---~h~~~~ 350 (1088)
||+.++.. ..+...|.|++|++.-++.|..||++++|+.++.. ..++ . +|.. .
T Consensus 151 ~dl~~~~~--------------~~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-~ 215 (388)
T 1xip_A 151 LDLRTKST--------------KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY-S 215 (388)
T ss_dssp EETTTCCE--------------EEEEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS-E
T ss_pred EEccCCcc--------------ccccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe-e
Confidence 99997532 11446899999996558999999999999986555 4456 2 2555 6
Q ss_pred eEEEEEcCCCCEEEEE
Q 001391 351 IWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg 366 (1088)
|.++.|.+++.++++=
T Consensus 216 V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 216 PLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEESSSSEEEEEE
T ss_pred EEEEEEecCCeEEEEE
Confidence 9999999998887753
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-06 Score=98.14 Aligned_cols=273 Identities=11% Similarity=0.071 Sum_probs=168.7
Q ss_pred CCCceEEecCCCceeeeeE-----EEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeC--
Q 001391 3 KKDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH-- 64 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~~~V~-----~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~-- 64 (1088)
++.|.+.|..+++..+.|. .++++ || +++|.++. ++.|.+||..+++.+.++....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~va~s--pD----G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPNPVVA--DD----GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEEC--TT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CCEEEEEECCCCeEEEEEECCCCCcEEEC--CC----CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 5679999999988443332 59999 99 77666543 4789999999999999987643
Q ss_pred ----CcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 65 ----GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 65 ----~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
+..-++++|+ |||+ .++++. . +++|.++|+.+. +.+.++.-- + |.
T Consensus 132 r~~~g~~P~~~a~s-------pDGk---~lyVan~~~~~~VsVID~~t~---------------~vv~tI~v~-g---~~ 182 (386)
T 3sjl_D 132 RFLVGTYPWMTSLT-------PDGK---TLLFYQFSPAPAVGVVDLEGK---------------AFKRMLDVP-D---CY 182 (386)
T ss_dssp CCCBSCCGGGEEEC-------TTSS---EEEEEECSSSCEEEEEETTTT---------------EEEEEEECC-S---EE
T ss_pred ccccCCCCceEEEc-------CCCC---EEEEEEcCCCCeEEEEECCCC---------------cEEEEEECC-C---cc
Confidence 2246789999 8884 455553 3 689999999853 444444321 1 11
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCC-CceEEEec---cCCceeEEE-EeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVH---SPERCLLYS-MKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~~~~~~~---~~~~~~~~s-~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.+.|. ..+.+++.+.||.+.+.++.+ ++...... ......++. ..+. .+++.+++ .+.+|.|.+.|..+.
T Consensus 183 ~~~P~--g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~--~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 183 HIFPT--APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS--QKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE--TTTTEEEE-EBTTSEEEEEECTTS
T ss_pred eeecC--CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE--cCCCcEEE-EeCCCEEEEEECCCC
Confidence 22341 445677788899999999876 55432221 111111111 1111 24565444 455899999998622
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe---------C-CCCCEEEEEEcCCCCEEEEEEC-------
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---------G-HEGSIFRIEWSSCGSKLVSVSD------- 276 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g-h~~~V~~v~~sp~g~~l~s~s~------- 276 (1088)
.. ..+..+. + ..+....++++|+++.+.....
T Consensus 258 ~~-------------------------------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h 306 (386)
T 3sjl_D 258 DA-------------------------------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 306 (386)
T ss_dssp SC-------------------------------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred cc-------------------------------eeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc
Confidence 11 0111110 0 0122334677899988777643
Q ss_pred ---CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEE-eCCCcEEEEcC-CCceeEEEcccCC
Q 001391 277 ---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITA-GEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 277 ---Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg-~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
...|.+.|+.+.+. ++. ...+ .+++.++++ +. +|++. ..+++|.++|. +++.+.++.....
T Consensus 307 k~~~~~V~viD~~t~kv--------~~~-i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 307 KTASRFVVVLDAKTGER--------LAK-FEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp TSCEEEEEEEETTTCCE--------EEE-EEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred CCCCCEEEEEECCCCeE--------EEE-EECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 25788999988643 331 2223 368899998 33 55554 56899999999 8898888865433
Q ss_pred CCeEEEEEcCC
Q 001391 349 RGIWRCLYDSL 359 (1088)
Q Consensus 349 ~~V~~l~~~~d 359 (1088)
-..+.+++|
T Consensus 376 --p~~l~~s~d 384 (386)
T 3sjl_D 376 --GPQVITTAD 384 (386)
T ss_dssp --SCCEEEECC
T ss_pred --CceeEECCc
Confidence 345556555
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.6e-07 Score=102.04 Aligned_cols=249 Identities=10% Similarity=0.045 Sum_probs=153.4
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC--eEEEEEe
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN--EIIVWKV 210 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg--~I~vwd~ 210 (1088)
.....|+|+| +++++++...++.|++||..++............. +++ ++++..|+++..++ .|.+++.
T Consensus 131 ~~P~~la~d~---~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~---ia~---~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVG---NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK---PAV---TKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECS---TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB---CEE---CTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeC---CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc---eeE---ecCCCcEEEEecCCCceEEEEEc
Confidence 4688999999 99877777778999999998877655444322211 333 57788888887766 7888887
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---eC-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~g-h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
. .......+ .. +...+.+++++|++..|..+..++.|+.||..
T Consensus 202 ~---------------------------------~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~ 248 (409)
T 3hrp_A 202 A---------------------------------SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK 248 (409)
T ss_dssp G---------------------------------GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT
T ss_pred C---------------------------------CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC
Confidence 6 22111222 12 45678899999965566667778899999988
Q ss_pred CCcccCCCCceeeeceeeeccCcce-E-EEEECC---CEEEEEeCCCcEEEEcCCCceeEEEcccC--------------
Q 001391 287 AEYWKDSDSIEEVGSSVLYGHNARV-W-DCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHI-------------- 347 (1088)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~~h~~~I-~-~v~~~~---~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~-------------- 347 (1088)
++.. ..+......++...- . .++|++ .++++-..++.|+.|+.+++ +..+.++.
T Consensus 249 ~~~~------~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~ 321 (409)
T 3hrp_A 249 TQEV------TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEAL 321 (409)
T ss_dssp TCCE------EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCB
T ss_pred CCCE------EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccE
Confidence 7532 111100022222222 2 788873 35556667889999999776 33333332
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 348 GRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
-.....++++++|+++++-. .++.|+.|++....+.++.++....++.+ + ......-.....++
T Consensus 322 ~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~-------------g--~~~~~~~~~P~gia 386 (409)
T 3hrp_A 322 FAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQID-------------G--TPLEATFNYPYDIC 386 (409)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCC-------------B--STTTCCBSSEEEEE
T ss_pred eCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCC-------------C--ChhceEeCCceEEE
Confidence 12378999999999888877 88999999964332332222210000000 0 00011123578999
Q ss_pred eccCCeEEEEec-CCeEEEE
Q 001391 427 LTSEDTLYIATN-HGYLYHT 445 (1088)
Q Consensus 427 ~s~~~~ll~~t~-~g~i~~~ 445 (1088)
+.+++.++++.. ++.|..+
T Consensus 387 vd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 387 YDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECSSSEEEEEESTTCEEEEE
T ss_pred EcCCCCEEEEECCCCeEEEE
Confidence 999988888754 4445544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.81 E-value=7.3e-07 Score=98.35 Aligned_cols=239 Identities=8% Similarity=0.019 Sum_probs=148.4
Q ss_pred ceEEEEecccccccCCCccceeeEEEE--------ECCCEEEEEEeccCCCCCCCCCCccccccceeee--ccCCCCcEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVAL--------FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--LPRLSHWVF 136 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~--------~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~--l~~h~~~I~ 136 (1088)
...+++|+ +++ .++++ ..++.|.+|+..... ...... ..++...+.
T Consensus 19 ~~~~~~~~-------~~g----~l~~~~~~~~~~~~~~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~~~~ 74 (314)
T 1pjx_A 19 GAEGPVFD-------KNG----DFYIVAPEVEVNGKPAGEILRIDLKTGK-------------KTVICKPEVNGYGGIPA 74 (314)
T ss_dssp TCEEEEEC-------TTS----CEEEEETTCEETTEECCEEEEECTTTCC-------------EEEEECCEETTEECCEE
T ss_pred CccCceEC-------CCC----CEEEEEeccccCCCCCCEEEEEeCCCCc-------------EEEEEecccCCCCCCCc
Confidence 46788888 676 45555 557899999876432 111111 123556799
Q ss_pred EEEEecccCC-CCEEEEEEcCCcEEEEEcCCCceEEE-eccC---CceeEEEEeeecCCCCCcEEEEEecC---------
Q 001391 137 DVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILE-VHSP---ERCLLYSMKLWGDNLEALRIASGTIY--------- 202 (1088)
Q Consensus 137 ~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~~~~~-~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~d--------- 202 (1088)
++++++ + +++++ +...+.|.+||.. ++.... .... .......+.+ ++++.+.++...+
T Consensus 75 ~i~~~~---~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 75 GCQCDR---DANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAF---DYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EEEECS---SSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEE---CTTSCEEEEECBCBCTTSCCCB
T ss_pred eEEEec---CCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEE---CCCCCEEEEecCcccccccccc
Confidence 999998 8 65444 4445579999988 654332 2111 1122344444 4667766665544
Q ss_pred ------CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc----CCCCEEE
Q 001391 203 ------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS----SCGSKLV 272 (1088)
Q Consensus 203 ------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s----p~g~~l~ 272 (1088)
+.|..|+.. ++ ...+..+......++++ |+++.+.
T Consensus 147 ~~~~~~~~l~~~~~~----------------------------------g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD----------------------------------GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp TTSSSCEEEEEECTT----------------------------------SC-EEEEEEEESSEEEEEEEECTTSCEEEEE
T ss_pred cccCCCCeEEEECCC----------------------------------CC-EEEeccCCCCcceEEEecccCCCCCEEE
Confidence 344444432 11 11222334557889999 9997654
Q ss_pred -EEECCCcEEEEEcC-CCcccCCCCceeeeceeeeccC-cceEEEEEC--CCEEEEEeCCCcEEEEcCC-CceeEEEccc
Q 001391 273 -SVSDDRSARIWEVR-AEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQLKMIKEH 346 (1088)
Q Consensus 273 -s~s~Dg~v~iWd~~-~~~~~~~~~~~~i~~~~~~~h~-~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-~~~~~~~~~h 346 (1088)
+...++.|.+|+.. +++.. ..+.+. .+.++. ..+..++++ +.++++...++.|.+|+.. ++.+..+..+
T Consensus 192 v~~~~~~~i~~~~~~~~g~~~---~~~~~~--~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 192 VAETPTKKLWSYDIKGPAKIE---NKKVWG--HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp EEETTTTEEEEEEEEETTEEE---EEEEEE--ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred EEECCCCeEEEEECCCCCccc---cceEEE--ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence 44567899999986 32210 001111 233343 567788887 5677777788999999995 7777777666
Q ss_pred CCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEcC
Q 001391 347 IGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 347 ~~~~V~~l~~~~dg~~l-~tg~~Dg~I~iwd~~ 378 (1088)
.. .+.+++++++++.| ++...++.|..|++.
T Consensus 267 ~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 267 FE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SS-CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CC-CceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 55 59999999999944 555567889999874
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-06 Score=99.60 Aligned_cols=235 Identities=10% Similarity=0.025 Sum_probs=148.4
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
....+|+|+ |+ ++++++.. ++.|++||..++++........ ..+ ++|+ ++++ .++++..+
T Consensus 131 ~~P~~la~d--~~----g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~--~~~-ia~~-------~~g~---~l~~~d~~ 191 (409)
T 3hrp_A 131 KYMWGIAAV--GN----NTVLAYQRDDPRVRLISVDDNKVTTVHPGFK--GGK-PAVT-------KDKQ---RVYSIGWE 191 (409)
T ss_dssp CCEEEEEEC--ST----TEEEEEETTTTEEEEEETTTTEEEEEEETCC--BCB-CEEC-------TTSS---EEEEEBSS
T ss_pred CCceEEEEe--CC----CCEEEEecCCCcEEEEECCCCEEEEeeccCC--CCc-eeEe-------cCCC---cEEEEecC
Confidence 457799999 88 77777766 4899999999887765554422 345 8888 7762 34444443
Q ss_pred C--EEEEEEeccCCCCCCCCCCccccccceeeeccC-CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE-
Q 001391 97 K--RVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE- 172 (1088)
Q Consensus 97 ~--~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~- 172 (1088)
+ .|.+|+..... ....+..+.. ....+.+++++| ++..|+.+..++.|+.||..++.....
T Consensus 192 ~~~~I~~~d~~~~~------------~~~~~g~~~~~~~~~p~~iav~p---~~g~lyv~d~~~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 192 GTHTVYVYMKASGW------------APTRIGQLGSTFSGKIGAVALDE---TEEWLYFVDSNKNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp TTCEEEEEEGGGTT------------CEEEEEECCTTSCSCCCBCEECT---TSSEEEEECTTCEEEEEETTTCCEEEEE
T ss_pred CCceEEEEEcCCCc------------eeEEeeeccchhcCCcEEEEEeC---CCCeEEEEECCCcEEEEECCCCCEEEEe
Confidence 3 77777765322 0111212222 456788999999 777777777788999999987764322
Q ss_pred ---eccCCceeEE-EEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 173 ---VHSPERCLLY-SMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 173 ---~~~~~~~~~~-s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
........-+ .+++ ++ ++.++++....+.|+.|+... .
T Consensus 257 ~~~~~g~~~~~P~~~ia~---~p~~g~lyv~d~~~~~I~~~~~~g---------------------------------~- 299 (409)
T 3hrp_A 257 QLELSGSLGTNPGPYLIY---YFVDSNFYMSDQNLSSVYKITPDG---------------------------------E- 299 (409)
T ss_dssp ECCCCSCCCCSSCCEEEE---ETTTTEEEEEETTTTEEEEECTTC---------------------------------C-
T ss_pred cccccCCCCCCccccEEE---eCCCCEEEEEeCCCCEEEEEecCC---------------------------------C-
Confidence 1111111102 4444 35 466667777788899998761 0
Q ss_pred eeEEEeCC---------------CCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeeceeeecc----
Q 001391 248 NLFRLVGH---------------EGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---- 307 (1088)
Q Consensus 248 ~~~~~~gh---------------~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h---- 307 (1088)
+..+.++ -....+++++|+|.++++-+ .++.|+.|++.++.. . .+.++
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v------~-----~~~g~~~~~ 367 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV------S-----TVAGQVDVA 367 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE------E-----EEEECTTCB
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE------E-----EEeCCCCCC
Confidence 1111111 24588999999999888888 889999999766532 1 22222
Q ss_pred -----------CcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 308 -----------NARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 308 -----------~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
-.....++++ +.++++-..++.|+.+++
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2357788887 445566666677776653
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-05 Score=90.32 Aligned_cols=254 Identities=11% Similarity=-0.001 Sum_probs=158.1
Q ss_pred CceEEecCCCceeeee-----EEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeee-C---
Q 001391 5 DLSEWRLDVGQYLGEI-----SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVF-H--- 64 (1088)
Q Consensus 5 ~i~iWdl~~g~~~~~V-----~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~-~--- 64 (1088)
+|.++|..+++..+.| ..++|+ || +++|.++. ++.|.+||..+.+.+.++... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p~i~~s--pD----g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~ 121 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLPNPVAA--HS----GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCCCeEEC--CC----CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 7899999998843322 389999 99 88888864 468999999999998887653 1
Q ss_pred --CcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeee-ccCCCCcEEEEE
Q 001391 65 --GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDVC 139 (1088)
Q Consensus 65 --~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~I~~v~ 139 (1088)
+..-..++++ |||+ .++++. . +++|.++| ... +.+.. +.. .. ++.
T Consensus 122 ~~g~~p~~~~~s-------pDG~---~l~v~n~~~~~~v~viD-~t~---------------~~~~~~i~~-~~---~~~ 171 (373)
T 2mad_H 122 DVGPYSWMNANT-------PNNA---DLLFFQFAAGPAVGLVV-QGG---------------SSDDQLLSS-PT---CYH 171 (373)
T ss_pred ccCCCccceEEC-------CCCC---EEEEEecCCCCeEEEEE-CCC---------------CEEeEEcCC-Cc---eEE
Confidence 1234678898 8884 455444 3 58899999 753 33444 322 11 245
Q ss_pred EecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEec-----cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 140 FLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVH-----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 140 f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~-----~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
+.| ++ ..+++.+.||.+.++|. +++...... ...........+ .+++..++..+..+.+.+.|+...
T Consensus 172 ~~~---~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 172 IHP---GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ---ANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEe---CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee---EecCCEEEEEcCCceEEEEeccCC
Confidence 556 44 45566778999999999 877664322 111111111111 122333333336788888888611
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe----------CCCCCEEEEEEcCCCCEEEEEEC-------
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----------GHEGSIFRIEWSSCGSKLVSVSD------- 276 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----------gh~~~V~~v~~sp~g~~l~s~s~------- 276 (1088)
. ...+..+. -.......++++|+++.+..+..
T Consensus 245 ~-------------------------------~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 245 G-------------------------------ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred c-------------------------------ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 1 01111111 01123445789999988777543
Q ss_pred ---CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEe-CCCcEEEEcC-CCceeEEE
Q 001391 277 ---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 277 ---Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~-~Dg~i~vWd~-~~~~~~~~ 343 (1088)
.+.|.+.|..+. +.+. .+ .-....+.++|+ +. +++++. .++.|.++|. +++.+..+
T Consensus 294 ~~~~~~V~VID~~t~--------~vv~--~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 294 HAAAKEVTSVTGLVG--------QTSS--QI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cCCCCeEEEEECCCC--------EEEE--EE-ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999885 3333 22 222357899998 55 677777 5899999999 77777774
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.76 E-value=0.00087 Score=84.01 Aligned_cols=467 Identities=10% Similarity=0.035 Sum_probs=245.3
Q ss_pred CceEEecCCCcee--------------eeeEEEEEeccC--CCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEee-----
Q 001391 5 DLSEWRLDVGQYL--------------GEISALCFVHLP--SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV----- 62 (1088)
Q Consensus 5 ~i~iWdl~~g~~~--------------~~V~~v~fs~~p--d~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~----- 62 (1088)
.+..||..+++.. ..|.++... + + +.+.+ |+ ++-|..||..+++... +..
T Consensus 88 Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d--~~~~----g~lwi-~t~~~gl~~~~~~~~~~~~-~~~~~~~~ 159 (781)
T 3v9f_A 88 GLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSS--VQAG----KGLWV-CTYYRGIEYLDIATGKFTH-YNKSTVPA 159 (781)
T ss_dssp CEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEEC--SSTT----SEEEE-EESSSCEEEEETTTTEEEE-ESTTTCTT
T ss_pred CcceECCCCCeEEeeccccCCCCCcccCcceEEEec--CccC----CCEEE-EECCCCeeEEECCCCeEEe-eccCcccC
Confidence 4777777665521 247777776 5 5 54444 55 6669999988766432 221
Q ss_pred eCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec-----cCCCCcEEE
Q 001391 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-----PRLSHWVFD 137 (1088)
Q Consensus 63 ~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-----~~h~~~I~~ 137 (1088)
.....|.++... +++ .+.+...++-+..|+..... .+..... .-....|.+
T Consensus 160 l~~~~i~~i~~d-------~~g----~lwigt~~~Gl~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~i~~ 215 (781)
T 3v9f_A 160 LPSEQTWTATEA-------EDG----KLYIGHVEGGLSILSLNDKS-------------VKHFVHDPQNPNSLPGNDVRC 215 (781)
T ss_dssp CSCCCEEEEEEE-------ETT----EEEEEETTTEEEEEETTTTE-------------EEEECC--------CCSSEEE
T ss_pred CCccceEEEEEC-------CCC----CEEEEecCCCeEEEcCCCCc-------------eEeeecCCCCcccCCCCceeE
Confidence 112357777765 555 55555556568888865421 1111100 011356889
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc------CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~------~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+...+ ++.+. .|+.+ -+.+||..+++...-... .....++++.. ..++ .|..|+..+-|.+++..
T Consensus 216 i~~d~---~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~---d~~g-~lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 216 IYKDT---NGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQ---LKDN-KLWIATELNGIMILDLQ 286 (781)
T ss_dssp EEECT---TCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEE---CTTS-EEEEEESSSCEEEEETT
T ss_pred EEEcC---CCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEE---CCCC-CEEEEeCCCCeEEECCC
Confidence 88877 77654 45555 688999876654321111 11233555443 3444 45556665678888876
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-------eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-------~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+...... .......+ .-....|.++...++|..- .|+.++-|..++
T Consensus 287 ~~~~~~~--------------------------~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~ 339 (781)
T 3v9f_A 287 QNQFLLP--------------------------EQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGGINFIS 339 (781)
T ss_dssp CC-----------------------------------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSCEEEEC
T ss_pred CCeeeee--------------------------eccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCeEEEeC
Confidence 2211000 00000000 0134578999998888754 455556688888
Q ss_pred cCCCcccCCCCceeeece-----eeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCceeEEEc---ccCCCCeEEEE
Q 001391 285 VRAEYWKDSDSIEEVGSS-----VLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIK---EHIGRGIWRCL 355 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~-----~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~---~h~~~~V~~l~ 355 (1088)
...... ..+... ........|.+++.. ...|-.|..++-+..|+........+. ......|+++.
T Consensus 340 ~~~~~~------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 340 NAPPTF------HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp SSCCSC------EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred CCCCcc------eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 765432 111100 001123468888887 466777887777888987443333221 11123599999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE
Q 001391 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~ 435 (1088)
..+++.+.+ |+.++-+..++..+.....+. .+ ......|+++...+++.+.+
T Consensus 414 ~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~------------------~~---------~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 414 KDSEGNLWF-GTYLGNISYYNTRLKKFQIIE------------------LE---------KNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp ECTTSCEEE-EETTEEEEEECSSSCEEEECC------------------ST---------TTCCCCEEEEEECTTSEEEE
T ss_pred ECCCCCEEE-EeccCCEEEEcCCCCcEEEec------------------cC---------CCCCCeEEEEEECCCCCEEE
Confidence 888887544 666666777776432111110 00 01224688999988999999
Q ss_pred EecCCeEEEEEeccCCcceeEEeeeec----CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCccee
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQVS----EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS 511 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~ 511 (1088)
++. +.++.++. .+..+....... ....+.++..... ..+-+|+..+.+..|+..++...
T Consensus 466 gt~-~Gl~~~~~---~~~~~~~~~~~~~~~~~~~~i~~i~~d~~---------g~lWigt~~~Gl~~~~~~~~~~~---- 528 (781)
T 3v9f_A 466 GTH-AGVFVIDL---ASKKVIHHYDTSNSQLLENFVRSIAQDSE---------GRFWIGTFGGGVGIYTPDMQLVR---- 528 (781)
T ss_dssp EET-TEEEEEES---SSSSCCEEECTTTSSCSCSCEEEEEECTT---------CCEEEEESSSCEEEECTTCCEEE----
T ss_pred EEC-CceEEEeC---CCCeEEecccCcccccccceeEEEEEcCC---------CCEEEEEcCCCEEEEeCCCCeEE----
Confidence 998 55765543 233332322211 1234555554332 34455555444666655432211
Q ss_pred eeeeeecc-ccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeecc--c-cCceEEEEE
Q 001391 512 FTFTWSAG-IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS--C-FGARIMCLD 587 (1088)
Q Consensus 512 ~~~~~~~~-~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~--~-h~~~It~l~ 587 (1088)
.+..... ....+.. .+...+|.+.++.. +|.+..||...... . .+.. + ....|.++.
T Consensus 529 -~~~~~~~l~~~~i~~--i~~d~~g~lWi~T~-~Glv~~~d~~~~~~------------~---~~~~~~gl~~~~i~~i~ 589 (781)
T 3v9f_A 529 -KFNQYEGFCSNTINQ--IYRSSKGQMWLATG-EGLVCFPSARNFDY------------Q---VFQRKEGLPNTHIRAIS 589 (781)
T ss_dssp -EECTTTTCSCSCEEE--EEECTTSCEEEEET-TEEEEESCTTTCCC------------E---EECGGGTCSCCCCCEEE
T ss_pred -EccCCCCCCCCeeEE--EEECCCCCEEEEEC-CCceEEECCCCCcE------------E---EccccCCCCCceEEEEE
Confidence 0000000 1111222 23456777776654 67657787653321 0 1111 1 123477887
Q ss_pred eeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 588 ASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 588 ~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
..++|++.+.+ .+| |..|+..+
T Consensus 590 ~d~~g~lW~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 590 EDKNGNIWAST-NTG-ISCYITSK 611 (781)
T ss_dssp ECSSSCEEEEC-SSC-EEEEETTT
T ss_pred ECCCCCEEEEc-CCc-eEEEECCC
Confidence 77888877554 455 77777654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-06 Score=91.05 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=141.0
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
..+..|+ ++++ .++.+. .++.|..|+..... . ..+ .....+.+++++| +
T Consensus 15 ~Egp~w~-------~~~~---~l~~~d~~~~~i~~~d~~~~~-------------~---~~~-~~~~~~~~i~~~~---d 64 (297)
T 3g4e_A 15 GESPVWE-------EVSN---SLLFVDIPAKKVCRWDSFTKQ-------------V---QRV-TMDAPVSSVALRQ---S 64 (297)
T ss_dssp EEEEEEE-------TTTT---EEEEEETTTTEEEEEETTTCC-------------E---EEE-ECSSCEEEEEEBT---T
T ss_pred ccCCeEE-------CCCC---EEEEEECCCCEEEEEECCCCc-------------E---EEE-eCCCceEEEEECC---C
Confidence 4677888 5432 444444 37899999987432 1 111 2346799999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccC---CceeEEEEeeecCCCCCcEEEEEecC---------CeEEEEEeccCc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVDWEH 214 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~d---------g~I~vwd~~~~~ 214 (1088)
++++++ . ++.|.+||..+++........ .......+.+ ++++.++++.... ..-.+|.+..
T Consensus 65 G~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~---d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-- 137 (297)
T 3g4e_A 65 GGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV---DPAGRYFAGTMAEETAPAVLERHQGALYSLFP-- 137 (297)
T ss_dssp SSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE---CTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--
T ss_pred CCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE---CCCCCEEEecCCcccccccccCCCcEEEEEEC--
Confidence 985544 4 678999999887654322211 1223444544 5677765543221 2345555540
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcC--CCccc
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVR--AEYWK 291 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~--~~~~~ 291 (1088)
.+. +..+..+......++|+|+++.+ ++.+.++.|..|++. ++...
T Consensus 138 ------------------------------~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 138 ------------------------------DHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp ------------------------------TSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred ------------------------------CCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc
Confidence 111 22223334557899999999876 555667899999974 33210
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEc-CCCCEEEEEe
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAG 367 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~-~dg~~l~tg~ 367 (1088)
..+.+. .+..+...+..+++. +.+.++....+.|.+||. +|+.+..+..+.. .+++++|. |+++.|+.++
T Consensus 187 ---~~~~~~--~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 187 ---NRRSVY--KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ---EEEEEE--ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEE
T ss_pred ---CcEEEE--ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEc
Confidence 001111 223344567888887 567777777888999999 5999888887755 59999998 8887665554
Q ss_pred C
Q 001391 368 F 368 (1088)
Q Consensus 368 ~ 368 (1088)
.
T Consensus 261 ~ 261 (297)
T 3g4e_A 261 A 261 (297)
T ss_dssp B
T ss_pred C
Confidence 3
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.3e-07 Score=103.20 Aligned_cols=172 Identities=14% Similarity=0.052 Sum_probs=122.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe-----------eEEEEeeeCCcceEEEEecccccccCCCccce
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-----------LIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~-----------~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
++..++++ +. +.++++|+...++||++++.+ ...... ... |..++|. .
T Consensus 39 ~~nlLais--~~----~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~fd-------~----- 97 (388)
T 1xip_A 39 SLQNLDIS--NS----KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCFH-------G----- 97 (388)
T ss_dssp CCBCEEEE--TT----TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEEE-------T-----
T ss_pred cccEEEEc--CC----CCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEEC-------C-----
Confidence 69999999 88 889999997788889976433 112222 232 8999982 2
Q ss_pred eeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 88 ~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
..|+++.++.|++||+.... .......|...|.++.+.+ . .++++..||.|.+||+.++
T Consensus 98 -~~L~v~~~~~l~v~dv~sl~---------------~~~~~~~~~~~v~~i~~~~---p--~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 98 -DQVLVSTRNALYSLDLEELS---------------EFRTVTSFEKPVFQLKNVN---N--TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp -TEEEEEESSEEEEEESSSTT---------------CEEEEEECSSCEEEEEECS---S--EEEEEETTSEEEEEETTTC
T ss_pred -CEEEEEcCCcEEEEEchhhh---------------ccCccceeecceeeEEecC---C--CEEEEECCCCEEEEEccCC
Confidence 34555588999999998532 2233445667788888776 3 3888999999999999988
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
.... +. ..+.++++ +++| ++.|..||.+++|+.. ...
T Consensus 157 ~~~~-~~----~~Vs~v~W---SpkG--~~vg~~dg~i~~~~~~---------------------------------~~~ 193 (388)
T 1xip_A 157 STKQ-LA----QNVTSFDV---TNSQ--LAVLLKDRSFQSFAWR---------------------------------NGE 193 (388)
T ss_dssp CEEE-EE----ESEEEEEE---CSSE--EEEEETTSCEEEEEEE---------------------------------TTE
T ss_pred cccc-cc----CCceEEEE---cCCc--eEEEEcCCcEEEEcCC---------------------------------Ccc
Confidence 7643 22 23445554 5777 6789999999999887 222
Q ss_pred e--eEEE------e---CCCCCEEEEEEcCCCCEEEEEE
Q 001391 248 N--LFRL------V---GHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 248 ~--~~~~------~---gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
. ...+ . +|...|.+|.|.+++.++++-.
T Consensus 194 ~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 194 MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 2 3334 2 4789999999999998887643
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.70 E-value=0.0027 Score=81.84 Aligned_cols=508 Identities=13% Similarity=0.088 Sum_probs=249.5
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccce
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~ 124 (1088)
.|++.+...++.+.......+..|...+.. +. .++++. ++.+.+++++... ++.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--------~~----~vvva~-g~~l~~fel~~~~-------------L~~ 546 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--------SS----QVVVAV-GRALYYLQIHPQE-------------LRQ 546 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC--------SS----EEEEEE-TTEEEEEEEETTE-------------EEE
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC--------CC----EEEEEE-CCEEEEEEeeCCc-------------eee
Confidence 456666555555555554444456655554 22 444444 5788888877421 222
Q ss_pred eeeccCCCCcEEEEEEecccC---CCCEEEEEEc-CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 125 VQSLPRLSHWVFDVCFLKVCN---GNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~---d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
.... .-.+.|.|+++.|... .++++|+|.. |++|+|+++.+.+.+....-+......++.+... ....+|..|-
T Consensus 547 ~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl 624 (1158)
T 3ei3_A 547 ISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCAL 624 (1158)
T ss_dssp EEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEE
T ss_pred eccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEe
Confidence 2222 2346799999987321 2468999996 9999999999877665443322223334433322 2346788999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.||.+..+.+... .+. + ... ...+-| ..++.=..+...+..-+-+..++..
T Consensus 625 ~dG~l~~~~~d~~--tg~------------------l-------~d~-r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~ 675 (1158)
T 3ei3_A 625 GDGALFYFGLNIE--TGL------------------L-------SDR-KKVTLG-TQPTVLRTFRSLSTTNVFACSDRPT 675 (1158)
T ss_dssp TTSEEEEEEECTT--TCC------------------E-------EEE-EEEECC-SSCCEEEEEESSSCEEEEEESSSCE
T ss_pred CCCeEEEEEEcCC--CCc------------------c-------ccc-eeEEcC-CCceEEEEEeeCCceeEEEECCCCE
Confidence 9999988776510 000 0 000 011222 2233333333333333333334444
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcce-EEEEEC----CCEEEEEeCCCcEEEEcCC-Cc--eeEEEcccCCCCeE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARV-WDCCLT----DSFIITAGEDCTCRVWGSD-GK--QLKMIKEHIGRGIW 352 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I-~~v~~~----~~~l~sg~~Dg~i~vWd~~-~~--~~~~~~~h~~~~V~ 352 (1088)
.++.-+. +. . +. .+ . -..+ ..+.|+ ++-++... ++.++|..++ -+ .++++.- +..+.
T Consensus 676 liy~~~~-~l------~-~s--~l-~-~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL--~~Tpr 740 (1158)
T 3ei3_A 676 VIYSSNH-KL------V-FS--NV-N-LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL--YESPR 740 (1158)
T ss_dssp EEEESSS-SE------E-EE--EB-S-SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC--SSEEE
T ss_pred EEEEcCC-ce------E-Ee--cc-C-hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC--CCCce
Confidence 4444322 11 0 10 00 0 0122 333454 34455444 4568888872 22 2333332 23688
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCCCC--c----c-------cC-------CccccccCCCcce--EEeeeCCCcc
Q 001391 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG--S----L-------ES-------HPEAKEFNGRTEI--FSIKIPNFSE 410 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~--~----~-------~~-------~~~~~~~~~~~~~--~~~~~~~~~~ 410 (1088)
.++++|+.+.++.+..+. ..++..+.... . . .+ ......|...... +.+-.|....
T Consensus 741 ri~y~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 741 KICYQEVSQCFGVLSSRI--EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEEEEGGGTEEEEEEEEE--EEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred EEEEcCCCCEEEEEEEec--cccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 999999888666554332 11222110000 0 0 00 0000011110011 1111222222
Q ss_pred ceeecc-CCCCceEEEE---eccC--CeEEEEe----------cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCC
Q 001391 411 QIRLTD-SKSEYVRCLH---LTSE--DTLYIAT----------NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS 474 (1088)
Q Consensus 411 ~~~~~~-~~~~~V~~l~---~s~~--~~ll~~t----------~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 474 (1088)
.+.... ..++.+.+++ |..+ ..++++| ..|+|+.+++.+ .+.+.+......+++.++.-..
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---~kL~lv~~~~v~g~v~al~~~~ 895 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---GKLQTVAEKEVKGAVYSMVEFN 895 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET---TEEEEEEEEEESSCEEEEEEET
T ss_pred EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC---CEEEEEEEEEcCCcCEEEeeeC
Confidence 111111 1234455554 3332 3566666 457788777752 3444455555566777776532
Q ss_pred CCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCC
Q 001391 475 NEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (1088)
Q Consensus 475 ~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~ 554 (1088)
..+++|- ...+++|++...+... ........ +.. ......+++++.|+.-..+.++....
T Consensus 896 ----------g~Lla~i-g~~l~vy~l~~~~~L~---~~~~~~~~----i~~--~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 896 ----------GKLLASI-NSTVRLYEWTTEKELR---TECNHYNN----IMA--LYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp ----------TEEEEEE-TTEEEEEEECTTSCEE---EEEEECCC----SCE--EEEEEETTEEEEEESSBCEEEEEEET
T ss_pred ----------CEEEEEc-CCEEEEEECCCCceEE---EEeecccc----EEE--EEEeccCCEEEEEEhhheEEEEEEEc
Confidence 2444443 3689999997643211 11111100 111 11222467888888888777766542
Q ss_pred CCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccc
Q 001391 555 PFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGA 634 (1088)
Q Consensus 555 ~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~ 634 (1088)
.. . .+...+ ...+...++++.+-.++ .++.|+.+|++.++..+..... ....+++...+.| |
T Consensus 956 ~~--~--------~L~~~a--~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~---~~~~~~L~~~~~f--h 1017 (1158)
T 3ei3_A 956 ME--G--------NFEEIA--RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATT---DEERQHLQEVGLF--H 1017 (1158)
T ss_dssp TT--T--------EEEEEE--ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCS---TTGGGBEEEEEEE--E
T ss_pred CC--C--------eEEEEE--eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCC---ccccceeeeEEEE--e
Confidence 21 1 222222 12345678898887665 6678999999999998763221 1112344444433 4
Q ss_pred ccccceeEEEEEeccC---------CceEEEEecCCCeEEEEE
Q 001391 635 HGISTVSTLSVAKLRS---------NQTEIRSTGGDGCICYLE 668 (1088)
Q Consensus 635 hg~~~Vtsv~~~~~~~---------~~~~l~t~g~Dg~i~iw~ 668 (1088)
-| +.|+++.-..... ....++-++.||.|-+.-
T Consensus 1018 lG-~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1018 LG-EFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp CS-SCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred CC-CcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 44 6788875321111 123466677788776553
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-05 Score=90.98 Aligned_cols=285 Identities=8% Similarity=-0.002 Sum_probs=167.8
Q ss_pred CCCCceEEecCCCcee----------------eee-EEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeee
Q 001391 2 GKKDLSEWRLDVGQYL----------------GEI-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF 63 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~----------------~~V-~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~ 63 (1088)
.++.|..+|..+|+.. ..+ ..+... +..|.+++ ++.|..+|.++|+.+..+...
T Consensus 61 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 61 RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--------GGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--------TTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--------CCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 3567888888888721 112 222333 34555555 799999999999998877753
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE-----EEE
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-----FDV 138 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I-----~~v 138 (1088)
.. ......+ .++ .+++...++.+..+|..+.. .+.......... ...
T Consensus 133 ~~-~~~~p~~--------~~~----~v~v~~~~g~l~~~d~~tG~---------------~~W~~~~~~~~~~~~~~~~~ 184 (376)
T 3q7m_A 133 GE-ALSRPVV--------SDG----LVLIHTSNGQLQALNEADGA---------------VKWTVNLDMPSLSLRGESAP 184 (376)
T ss_dssp SC-CCSCCEE--------ETT----EEEEECTTSEEEEEETTTCC---------------EEEEEECCC-----CCCCCC
T ss_pred Cc-eEcCCEE--------ECC----EEEEEcCCCeEEEEECCCCc---------------EEEEEeCCCCceeecCCCCc
Confidence 32 1111122 233 56666678999999987533 222111111100 111
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE---EEEe-e-ecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL---YSMK-L-WGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~---~s~~-~-~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.. .+..++.+..++.+..+|..+++.+.+......... ..+. . ......+..++.++.++.+..+|..
T Consensus 185 ~~-----~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~-- 257 (376)
T 3q7m_A 185 TT-----AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR-- 257 (376)
T ss_dssp EE-----ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT--
T ss_pred EE-----ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC--
Confidence 11 234677788899999999999988766553211000 0000 0 0000124567778889999999987
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
+++.+..... .....+.. ++..+..++.++.+..+|..+++.
T Consensus 258 -------------------------------tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~--- 299 (376)
T 3q7m_A 258 -------------------------------SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT--- 299 (376)
T ss_dssp -------------------------------TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE---
T ss_pred -------------------------------CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE---
Confidence 3444433321 22333333 466788888999999999988643
Q ss_pred CCceeeeceeee-ccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 294 DSIEEVGSSVLY-GHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 294 ~~~~~i~~~~~~-~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
+. ... .....+......+..|+.++.+|.+.++|. +|+.+........ .+.+.... .+..|+.++.||.
T Consensus 300 -----~w--~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~-~~~~~~~~-~~~~l~v~~~~G~ 370 (376)
T 3q7m_A 300 -----LW--TQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS-GFQTEPVA-ADGKLLIQAKDGT 370 (376)
T ss_dssp -----EE--EECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-CBCSCCEE-ETTEEEEEBTTSC
T ss_pred -----EE--eecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-cceeCCEE-ECCEEEEEeCCCE
Confidence 11 111 111222333345788999999999999998 8888877765333 23322111 2456888999999
Q ss_pred EEEEE
Q 001391 372 IKVHQ 376 (1088)
Q Consensus 372 I~iwd 376 (1088)
+..|+
T Consensus 371 l~~~~ 375 (376)
T 3q7m_A 371 VYSIT 375 (376)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99886
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-06 Score=103.67 Aligned_cols=303 Identities=8% Similarity=-0.030 Sum_probs=157.0
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEEC------CCEEEEEEecc
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFG------EKRVKLFELNF 106 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g------d~~v~iw~l~~ 106 (1088)
+..|++++ ++.|..+|.++|+++.++... +......+..+|.- .++ .+++..+ ++.|..||..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v----~~g----~v~vg~~~~~~~~~g~v~a~D~~t 192 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV----VNG----KVVIGNGGAEFGVRGYVTAYDAET 192 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE----ETT----EEEECCBCTTTCCBCEEEEEETTT
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE----ECC----EEEEEeCCCccCCCCEEEEEECCC
Confidence 34666666 899999999999999888763 22112222223210 133 3433322 46788888775
Q ss_pred CCCC----CCCCCCcccccccee----eec--------cCCCCcEEEEEEecccCCCCEEEEEEcCCc------------
Q 001391 107 ELSP----NSQYQPETCVNLSLV----QSL--------PRLSHWVFDVCFLKVCNGNRSLAIGCSDNS------------ 158 (1088)
Q Consensus 107 ~~~~----~~~~~~~~~~~~~~~----~~l--------~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~------------ 158 (1088)
.... .....|........+ ... .++......+++.| +..+|+.+..++.
T Consensus 193 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~---~~~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 193 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP---ELNLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET---TTTEEEEECCCEESSCHHHHHTTCS
T ss_pred CcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC---CCCEEEEeCCCCCccccCCCCCCCC
Confidence 4300 000000000000000 000 01111113678888 8888998887763
Q ss_pred -------EEEEEcCCCceEEEeccCC----------ceeEEEEeeecCCCCCc---EEEEEecCCeEEEEEeccCccccC
Q 001391 159 -------IRVWDISNSSIILEVHSPE----------RCLLYSMKLWGDNLEAL---RIASGTIYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 159 -------V~iWd~~~~~~~~~~~~~~----------~~~~~s~~~~~~s~~~~---~l~sg~~dg~I~vwd~~~~~~~~~ 218 (1088)
|..||..+++.+-.++... ...+..+. .++. .++.++.+|.++++|..+++....
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-----~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-----IDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-----ETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec-----cCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 9999999999987765321 11122221 1333 788899999999999986664321
Q ss_pred CC-CCCCc--cCCCCCCCCceeEecc----cccceeeeEEEe---CCCCCEEEEEEcCCCCEEEEEEC------------
Q 001391 219 LN-SPEGN--HAHGSSSDFKCFKLQD----QQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSD------------ 276 (1088)
Q Consensus 219 ~~-~~~~~--s~~~~~~~~~~~~~~~----~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s~s~------------ 276 (1088)
.. ..... ..+... ..-+..-. .. .......+. |.. .-..++|+|+.+.+++...
T Consensus 345 ~~~~~~~w~~~~~~~~--~~pi~~~~~~~~~~-~~~~~~~~p~~~Gg~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 345 KGIVPQSWTKGMDMKT--GRPILDEENAAYWK-NGKRNLVTPAFWGAH-DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EESSCCSSEEEEETTT--TEEEECHHHHCTTT-SSSCEEESSCTTCSS-CSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred ccccccccccccCccC--CCcccchhhccccC-CCCeeEeCCCccccc-CCCcceECCCCCEEEEeccccceeeeecccc
Confidence 10 00000 000000 00000000 00 000011111 111 1123678887777666532
Q ss_pred ---------------------------------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE--EEEECCCEE
Q 001391 277 ---------------------------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLTDSFI 321 (1088)
Q Consensus 277 ---------------------------------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~--~v~~~~~~l 321 (1088)
++.|+.||+.+++. +- ....+ ..++ .+.-.+.++
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~--------~W--~~~~~-~~~~~g~~~tagglv 489 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA--------AW--EVPYV-TIFNGGTLSTAGNLV 489 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE--------EE--EEEES-SSCCCCEEEETTTEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe--------Ee--EccCC-CCccCccceECCCEE
Confidence 36788888887632 21 22212 2222 222347899
Q ss_pred EEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEeC
Q 001391 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGF 368 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~ 368 (1088)
+.|+.||.++.||. +|+.+.+++...+-...-+.|..+|+ ++++.+.
T Consensus 490 f~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 490 FEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 99999999999999 89999988765442123466677776 4444433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=107.99 Aligned_cols=298 Identities=9% Similarity=0.004 Sum_probs=155.2
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEEC------CCEEEEEEecc
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFG------EKRVKLFELNF 106 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g------d~~v~iw~l~~ 106 (1088)
+..|++++ ++.|..+|..+|+++.++... ....-..+..+|. ..++ .+++..+ ++.|+.||..+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~----v~~~----~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR----VFKG----KVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE----EETT----EEEECCBCTTTCCBCEEEEEETTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE----EECC----EEEEEecccccCCCCEEEEEECCC
Confidence 34666666 799999999999999988864 2111011111211 0122 3444332 57888888775
Q ss_pred CCCC-------CCCCCCc------ccc-c----cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-----------
Q 001391 107 ELSP-------NSQYQPE------TCV-N----LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN----------- 157 (1088)
Q Consensus 107 ~~~~-------~~~~~~~------~~~-~----~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg----------- 157 (1088)
.... .....+- ... . .... ...+.......++++| ++.+|+.+..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~-~~~~g~~~w~~~~~d~---~~~~vy~~~~~~~~w~~~~~~~~ 275 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWW-EAGGGGTMWDSMTFDA---ELNTMYVGTGNGSPWSHKVRSPK 275 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHH-HHCEECCCCSCEEEET---TTTEEEEECCCEESSCHHHHSTT
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCcee-EeCCCcccccceeEcC---CCCEEEEECCCCccccCCCCCcc
Confidence 4300 0000000 000 0 0000 0001111223678888 888888877654
Q ss_pred --------cEEEEEcCCCceEEEeccCC----------ceeEEEEeeecCCCCC---cEEEEEecCCeEEEEEeccCccc
Q 001391 158 --------SIRVWDISNSSIILEVHSPE----------RCLLYSMKLWGDNLEA---LRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 158 --------~V~iWd~~~~~~~~~~~~~~----------~~~~~s~~~~~~s~~~---~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+|..+|..+++.+-.++... ...+... ..++ ..++.++.+|.++++|..+++..
T Consensus 276 ~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~-----~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 276 GGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI-----KIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE-----EETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEec-----ccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 59999999999887765321 1122221 1245 67889999999999999865543
Q ss_pred cCCC-CCCC--ccCCCCCCCCceeEecccccceeeeEEEe---CCCCCEEEEEEcCCCCEEEEEECC-------------
Q 001391 217 PLLN-SPEG--NHAHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSDD------------- 277 (1088)
Q Consensus 217 ~~~~-~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s~s~D------------- 277 (1088)
-... .... ...+.. ...+..-...........+. |...+ ..++++|++.++++...+
T Consensus 351 ~~~~~~~~~~~~~~d~~---g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 351 SAKNFVPVNWASGYDKH---GKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp EEEESSCCSSEEEECTT---SCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEEETTTTEEEEEEEECCCEEEECTTCCT
T ss_pred ccccccccCcccccCCC---CceeeccccCcCCCccEECcCcccccCC-CCceEcCCCCEEEEeChhcceeeeccccccc
Confidence 2110 0000 000000 00000000000000000000 11111 257888888877765432
Q ss_pred ------------------------------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE--EECCCEEEEEe
Q 001391 278 ------------------------------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC--CLTDSFIITAG 325 (1088)
Q Consensus 278 ------------------------------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v--~~~~~~l~sg~ 325 (1088)
+.|..||+.+++. +- .. .+..+++.. ...+.+++.++
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--------~W--~~-~~~~~~~~g~~~~~g~~v~~g~ 495 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--------AW--SV-EHVSPWNGGTLTTAGNVVFQGT 495 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--------EE--EE-EESSSCCCCEEEETTTEEEEEC
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--------Ee--ec-CCCCCCcCcceEeCCCEEEEEC
Confidence 6788889888632 21 11 122223332 23377889999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
.||.+++||. +|+.+..+....+-...-+.+..+|+.++
T Consensus 496 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 496 ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 9999999999 89999998755432233456667876443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-06 Score=91.33 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=133.7
Q ss_pred CCCceEEecCCCce-----eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee---CCcceEEEEec
Q 001391 3 KKDLSEWRLDVGQY-----LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF---HGIRLHGISCN 74 (1088)
Q Consensus 3 d~~i~iWdl~~g~~-----~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~---~~~~V~~i~~s 74 (1088)
++.|..||..+++. ...+.+++++ |+ ++++++ .+..|.+||..+++........ ...++.+++++
T Consensus 34 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~--~d----G~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d 106 (297)
T 3g4e_A 34 AKKVCRWDSFTKQVQRVTMDAPVSSVALR--QS----GGYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD 106 (297)
T ss_dssp TTEEEEEETTTCCEEEEECSSCEEEEEEB--TT----SSEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEeCCCceEEEEEC--CC----CCEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC
Confidence 56788999888762 3568899999 98 775554 5778999999988754333321 23468889998
Q ss_pred ccccccCCCccceeeEEEEECC---------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 75 FINCTEGSVSTRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd---------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
|+|+ .++...+. ..-.||.+.... +.. .+..+-.....++|+|
T Consensus 107 -------~dG~---l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--------------~~~-~~~~~~~~pngi~~sp--- 158 (297)
T 3g4e_A 107 -------PAGR---YFAGTMAEETAPAVLERHQGALYSLFPDH--------------HVK-KYFDQVDISNGLDWSL--- 158 (297)
T ss_dssp -------TTSC---EEEEEEECCSBTTBCCTTCEEEEEECTTS--------------CEE-EEEEEESBEEEEEECT---
T ss_pred -------CCCC---EEEecCCcccccccccCCCcEEEEEECCC--------------CEE-EEeeccccccceEEcC---
Confidence 7872 44444332 346788776422 111 1122334568999999
Q ss_pred CCCEEE-EEEcCCcEEEEEc--CCCceE-----EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcccc
Q 001391 146 GNRSLA-IGCSDNSIRVWDI--SNSSII-----LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 146 d~~~la-sgs~Dg~V~iWd~--~~~~~~-----~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~ 217 (1088)
+++.|+ +.+.++.|.+|++ .++... ..+.. .......+++ ++++.+.++....+.|.+||..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~---d~~G~lwva~~~~~~v~~~d~~------ 228 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCI---DAEGKLWVACYNGGRVIRLDPV------ 228 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEE---BTTSCEEEEEETTTEEEEECTT------
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEE---CCCCCEEEEEcCCCEEEEEcCC------
Confidence 998664 4556789999997 455432 11111 1123344554 5678777777777889999987
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc-CCCCEEEEEE
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVS 275 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s-p~g~~l~s~s 275 (1088)
+++.+..+..+...+++++|. |+++.|..++
T Consensus 229 ---------------------------tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 229 ---------------------------TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ---------------------------TCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred ---------------------------CceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 567777777777889999998 8887765444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-06 Score=92.40 Aligned_cols=228 Identities=12% Similarity=0.009 Sum_probs=136.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
...+..|+ ++++ .++.+.. ++.|..|+.. .. ...+..+...+..+++++
T Consensus 46 ~~egp~~~-------~~g~---~l~~~d~~~~~i~~~~~~-g~----------------~~~~~~~~~~~~gl~~d~--- 95 (305)
T 3dr2_A 46 WSEGPAWW-------EAQR---TLVWSDLVGRRVLGWRED-GT----------------VDVLLDATAFTNGNAVDA--- 95 (305)
T ss_dssp SEEEEEEE-------GGGT---EEEEEETTTTEEEEEETT-SC----------------EEEEEESCSCEEEEEECT---
T ss_pred CccCCeEe-------CCCC---EEEEEECCCCEEEEEeCC-CC----------------EEEEeCCCCccceeeECC---
Confidence 46888998 6762 3555543 6889889763 11 123334556789999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCce---eEEEEeeecCCCCCcEEEE----Eec-------------CCeE
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC---LLYSMKLWGDNLEALRIAS----GTI-------------YNEI 205 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~---~~~s~~~~~~s~~~~~l~s----g~~-------------dg~I 205 (1088)
+|+++++...++.|.+|+.. ++........... ....+.+ ++++.+.++ |+. .+.|
T Consensus 96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~---d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV---ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEE---CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEE---CCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 99877665556789999986 5432221111110 1112332 456766665 321 1334
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC------Cc
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD------RS 279 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D------g~ 279 (1088)
..+|.. +++.. .+. .......++|+|+++.|+.+... +.
T Consensus 172 ~~~d~~---------------------------------~g~~~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 172 YRLPPD---------------------------------GSPLQ-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp EEECSS---------------------------------SCCCE-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred EEEcCC---------------------------------CCcEE-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 444443 12221 122 34567889999999987776654 68
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEc
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~ 357 (1088)
|+.|++..... .... ............+++. ++ |..+..+ .|.+|+.+++.+..+..+. .+.+++|.
T Consensus 217 i~~~~~~~~~l------~~~~-~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g~~~~~~~~~~--~~~~~~f~ 285 (305)
T 3dr2_A 217 ITAFAWRDGAL------HDRR-HFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDGQLLGHIPTPG--TASNCTFD 285 (305)
T ss_dssp EEEEEEETTEE------EEEE-EEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTTSCEEEEEECSS--CCCEEEEC
T ss_pred EEEEEecCCCc------cCCe-EEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCCCCEEEEEECCC--ceeEEEEe
Confidence 99999875321 1011 0111122334556776 44 5555545 4999999998888887665 38899999
Q ss_pred CCCCEEEEEeCCCCEEE
Q 001391 358 SLSSLLVTAGFDSAIKV 374 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~i 374 (1088)
++++.|..++.++.+++
T Consensus 286 ~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 286 QAQQRLFITGGPCLWML 302 (305)
T ss_dssp TTSCEEEEEETTEEEEE
T ss_pred CCCCEEEEEcCCeEEEE
Confidence 99988888877654443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-06 Score=94.20 Aligned_cols=275 Identities=9% Similarity=0.011 Sum_probs=149.7
Q ss_pred cceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEec
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p 142 (1088)
....+++++ ++| .++++.. ++.++||.+.... ...|.. ......+|-..+..+++.+
T Consensus 17 ~~p~~va~~-------~~g----~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~-------~~~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLT-------PDG----RLFLSLHQFYQPEMQVAELTQDG--LIPFPP-------QSGNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEEC-------TTS----CEEEEECGGGCCSCSEEEEETTE--EEESCC-------CCSSCCCCCSCEEEEEECS
T ss_pred CCcceEEEC-------CCC----CEEEEeCCCCCCceEEEEECCCC--eecCCC-------cccCcccceeEeeEEEEcC
Confidence 368999999 787 5666642 3437788776211 000000 0011234667899999999
Q ss_pred ccCCCCEEEEEEc-----CCcEEEEEcCCCceEEEeccCC-----ceeEEEEeeecCCC-CCcEEEEEe---cCCeEEEE
Q 001391 143 VCNGNRSLAIGCS-----DNSIRVWDISNSSIILEVHSPE-----RCLLYSMKLWGDNL-EALRIASGT---IYNEIIVW 208 (1088)
Q Consensus 143 ~~~d~~~lasgs~-----Dg~V~iWd~~~~~~~~~~~~~~-----~~~~~s~~~~~~s~-~~~~l~sg~---~dg~I~vw 208 (1088)
++++.++-.. ++.|.+||+.+++.+..+..+. ......+++ ++ ++...++.. .++.|.+|
T Consensus 77 ---~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v---d~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 77 ---NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV---DLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp ---SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE---ETTTTEEEEEECCSGGGCEEEEE
T ss_pred ---CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE---ecCCCEEEEEcCccCCCCeEEEE
Confidence 8876665433 5789999999998776665321 112234444 23 344455555 68899999
Q ss_pred EeccCccccCCCCCCCccCCCCCC--CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSS--DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
|+.+.+............++.... ....+..... .+. + ..-...+..|+|+|+++.|+.+..++. ++|.+.
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~--~g~-~---~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQP--DGT-V---IRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECT--TSC-E---ECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEEEEeccC--CCc-e---eceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 987544322111100000000000 0000000000 000 0 001134789999999998888877663 555554
Q ss_pred CCcccC-C-CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 287 AEYWKD-S-DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 287 ~~~~~~-~-~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
...... . ...+....+...++......++++ +.++++...++.|.+||. +++..............++++.+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 311000 0 000101101222444455667887 678888888999999999 77644333322222588999999998
Q ss_pred EEEEEeCCCCEE
Q 001391 362 LLVTAGFDSAIK 373 (1088)
Q Consensus 362 ~l~tg~~Dg~I~ 373 (1088)
++++.+..+.+.
T Consensus 304 l~v~~~~~~~~~ 315 (343)
T 2qe8_A 304 LYFDCNQLHHSA 315 (343)
T ss_dssp EEEEECCGGGSG
T ss_pred EEEEeCcccccc
Confidence 888876554443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-05 Score=84.08 Aligned_cols=226 Identities=9% Similarity=-0.050 Sum_probs=137.1
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
..+..|+ |+++ .++.+. .++.|..|+..... .. .+. +...|.+++++| +
T Consensus 51 ~egp~~~-------~~~~---~l~~~d~~~~~i~~~d~~~~~-------------~~---~~~-~~~~v~~i~~~~---d 100 (326)
T 2ghs_A 51 GEGPTFD-------PASG---TAWWFNILERELHELHLASGR-------------KT---VHA-LPFMGSALAKIS---D 100 (326)
T ss_dssp EEEEEEE-------TTTT---EEEEEEGGGTEEEEEETTTTE-------------EE---EEE-CSSCEEEEEEEE---T
T ss_pred CcCCeEe-------CCCC---EEEEEECCCCEEEEEECCCCc-------------EE---EEE-CCCcceEEEEeC---C
Confidence 4677888 6542 455544 37889999876422 11 111 245799999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccC---CceeEEEEeeecCCCCCcEEEEEecC----CeEEEEEeccCccccCC
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~d----g~I~vwd~~~~~~~~~~ 219 (1088)
++++++. .+ .|.+||..+++........ .......+.+ ++++.++++...+ +...||.+.
T Consensus 101 g~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~---d~~G~l~v~~~~~~~~~~~~~l~~~~-------- 167 (326)
T 2ghs_A 101 SKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRM---HPSGALWIGTMGRKAETGAGSIYHVA-------- 167 (326)
T ss_dssp TEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE---CTTSCEEEEEEETTCCTTCEEEEEEE--------
T ss_pred CeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEE---CCCCCEEEEeCCCcCCCCceEEEEEe--------
Confidence 8877654 44 4999999888754332211 1223445554 5677766554321 223344332
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcC--CC-cccCCCC
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVR--AE-YWKDSDS 295 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~--~~-~~~~~~~ 295 (1088)
.++ +..+..+......++|+|+++.++. .+.++.|.+|++. ++ ... .
T Consensus 168 -------------------------~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---~ 218 (326)
T 2ghs_A 168 -------------------------KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---K 218 (326)
T ss_dssp -------------------------TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---C
T ss_pred -------------------------CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---C
Confidence 111 1112223345788999999987654 4567899999986 33 210 0
Q ss_pred ceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEc-CCCCEEEEEeC
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGF 368 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~-~dg~~l~tg~~ 368 (1088)
.+.+. .+......+..+++. +.+.++...++.|.+|+.+++.+..+..+.. .+.+++|. ++++.|+.++.
T Consensus 219 ~~~~~--~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 219 AEVFI--DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEEEE--ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred ceEEE--ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 11111 222234456778887 5666666667899999998888888776665 59999998 88876655543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.8e-06 Score=93.82 Aligned_cols=267 Identities=11% Similarity=0.074 Sum_probs=161.1
Q ss_pred CCceEEecCCCceeeeeE-----EEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeee----
Q 001391 4 KDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVF---- 63 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~-----~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~---- 63 (1088)
++|.+.|+.+++..+.|. .++++ || +++|.++. ++.|.++|..+++.+.++...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~Pgia~S--pD----gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLPHPVAA--ED----GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSCEEEEC--TT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CeEEEEECCCCEEEEEEECCCCCceEEC--CC----CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 689999999988443332 89999 99 77666653 468999999999999998763
Q ss_pred --CCcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 64 --HGIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 64 --~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
.+...+++.|+ |||+ .++++. . +++|.+.|+... +.+..+.-- + +..
T Consensus 173 ~~~g~~P~~~~~s-------pDGk---~lyV~n~~~~~~VsVID~~t~---------------kvv~~I~v~-g---~~~ 223 (426)
T 3c75_H 173 FLVGTYQWMNALT-------PDNK---NLLFYQFSPAPAVGVVDLEGK---------------TFDRMLDVP-D---CYH 223 (426)
T ss_dssp CCBSCCGGGSEEC-------TTSS---EEEEEECSSSCEEEEEETTTT---------------EEEEEEECC-S---EEE
T ss_pred cccCCCcceEEEc-------CCCC---EEEEEecCCCCeEEEEECCCC---------------eEEEEEEcC-C---cee
Confidence 12346788999 8884 444544 3 689999999853 344444321 1 133
Q ss_pred EecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEe----ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 140 FLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEV----HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 140 f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~----~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
..| ++ ..+++.+.||.+.+.+..+++..... ............+ .+++..++..+..+.+.+.|.....
T Consensus 224 ~~p---~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~---~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 224 IFP---ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAF---SLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp EEE---EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEE---CTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred ecc---CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeee---cCCCCEEEEEeCCCcEEEEeccCCc
Confidence 445 33 45666777888888888666554321 1111110001111 4556666555677899999986211
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC----------CCcEEEEE
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD----------DRSARIWE 284 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~----------Dg~v~iWd 284 (1088)
..... .+.+-.. ......... .....++++|+++++..... ++.|.+.|
T Consensus 298 ~~v~~----------------~~~~~~~--~~i~~g~~p---~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 298 ATFRA----------------PIEALTE--AERADDWRP---GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp EEECC----------------CEESSCT--TTGGGTEEE---CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred eEEee----------------eeeeccc--ccccccccc---CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 10000 0000000 000000001 11123689999887766532 35799999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEe-CCCcEEEEcC-CCceeEEE
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~-~Dg~i~vWd~-~~~~~~~~ 343 (1088)
..+.+ .+. .+. -....+.+.|+ +. ++++.. .++.|.|+|. +++.++++
T Consensus 357 ~~T~k--------vv~--~I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 357 AETGE--------RIN--KIE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTTCC--------EEE--EEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCe--------EEE--EEE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99854 333 111 11257889998 56 787777 5999999999 88888887
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-06 Score=102.27 Aligned_cols=246 Identities=13% Similarity=0.063 Sum_probs=143.8
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-----C-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-----G-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-----d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..+.+++|| || +++||-+. + .+|+|||+.+|+.+... .++.+..+++|+ + ++ .++
T Consensus 129 ~~l~~~~~S--pD----g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~k~~~~~Ws-D-------g~---~l~ 189 (693)
T 3iuj_A 129 TALDQLSFS--RD----GRILAYSLSLAGSDWREIHLMDVESKQPLETP--LKDVKFSGISWL-G-------NE---GFF 189 (693)
T ss_dssp CEEEEEEEC--TT----SSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EEEEESCCCEEE-T-------TT---EEE
T ss_pred EEEEEEEEC--CC----CCEEEEEEecCCCceEEEEEEECCCCCCCccc--cCCceeccEEEe-C-------CC---EEE
Confidence 468889999 99 88888543 2 58999999999865431 111123456666 3 31 444
Q ss_pred EEECC-------------CEEEEEEeccCCCCCCCCCCccccccceeeeccC-CCCcEEEEEEecccCCCCEEEEEEc--
Q 001391 92 ALFGE-------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCS-- 155 (1088)
Q Consensus 92 a~~gd-------------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~I~~v~f~p~~~d~~~lasgs~-- 155 (1088)
.+..+ ..|.+|++.+.. ..-.++..... |..++.++.++| |+++|+....
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-----------~~~~~v~~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~~~ 255 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQ-----------EDDRLVFGAIPAQHHRYVGATVTE---DDRFLLISAANS 255 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCG-----------GGCEEEESCSGGGCCSEEEEEECT---TSCEEEEEEESS
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCc-----------ccceEEEecCCCCCeEEEEEEEcC---CCCEEEEEEccC
Confidence 44444 348888887543 01234555555 667789999999 9997755432
Q ss_pred --CCcEEEEEcCCCc-eEEEeccCCceeEEEEeeecCCCCCcE-EEEEecC---CeEEEEEeccCccccCCCCCCCccCC
Q 001391 156 --DNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEALR-IASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 156 --Dg~V~iWd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~~~~~-l~sg~~d---g~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
++.|.++|+.++. ....+..+.....+.+ ++++.. ++....+ +.|..+++.+.
T Consensus 256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~-----~~~g~~l~~~t~~~~~~~~l~~~d~~~~--------------- 315 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSLV-----DNKGSTLYLLTNRDAPNRRLVTVDAANP--------------- 315 (693)
T ss_dssp SSCCEEEEEETTSTTCCCEEEECSSSSCEEEE-----EEETTEEEEEECTTCTTCEEEEEETTSC---------------
T ss_pred CCCcEEEEEECCCCCCceEEEeCCCCceEEEE-----eccCCEEEEEECCCCCCCEEEEEeCCCC---------------
Confidence 3589999997763 3344444433322221 133444 4444333 67888888711
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC---cEEEEEcCCCcccCCCCceeeeceeee
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
.......+..|...+. .|++++++|+....++ .|++|++..+.. +. ...
T Consensus 316 ----------------~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~------~~----l~~ 367 (693)
T 3iuj_A 316 ----------------GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV------RE----VAL 367 (693)
T ss_dssp ----------------CGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE------EE----ECC
T ss_pred ----------------CccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee------EE----eec
Confidence 1112345566666665 8999999887766544 688888875321 11 222
Q ss_pred ccCcceEEEEEC--CCEEEEEeCC----CcEEEEcCCCceeEEEc
Q 001391 306 GHNARVWDCCLT--DSFIITAGED----CTCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~~D----g~i~vWd~~~~~~~~~~ 344 (1088)
.....+..+.++ +..++....+ +++..||+.+.....+.
T Consensus 368 p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 368 PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 333455555554 3333333333 78888888443344443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.1e-07 Score=98.38 Aligned_cols=309 Identities=12% Similarity=0.050 Sum_probs=177.9
Q ss_pred eEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 7 ~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
.+|....+.. ...+..+. .+ +.+.++..++.|..|| .+++.+..+... ...+..+... +++
T Consensus 11 ~~W~~~~~~~--~~~~~~~d--~~----g~l~v~t~~~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~-------~~g-- 71 (330)
T 3hxj_A 11 IKWEFLIGNS--IDSSPILA--KN----GTIYLGSSNKNLYAIN-TDGSVKWFFKSG-EIIECRPSIG-------KDG-- 71 (330)
T ss_dssp -CCTTTSCEE--ECCCCEEC--TT----SCEECSSTTTTTEEEC-TTSCEEESSCGG-GEEEECCEET-------TTT--
T ss_pred EEEEEeCCCC--cccCceEc--cC----CeEEEEcCCCEEEEEC-CCCcEEEEEecC-CCcccceEEe-------cCC--
Confidence 4566554442 22344444 44 4444444478899999 889887665542 2235566665 554
Q ss_pred eeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 87 ~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.+.+ +.++ +..+|... +.+..+...........+. +..|..++.++.|..+|..
T Consensus 72 --~l~v-~t~~-l~~~d~~g----------------~~~~~~~~~~~~~~~~~~~-----~~~l~v~t~~~~l~~~d~~- 125 (330)
T 3hxj_A 72 --TIYF-GSDK-VYAINPDG----------------TEKWRFDTKKAIVSDFTIF-----EDILYVTSMDGHLYAINTD- 125 (330)
T ss_dssp --EECC-SSCE-EEEECCCG----------------GGGGGSCC-----CCEEEE-----TTEEEEECTTSEEEEECTT-
T ss_pred --cEEE-ecCc-EEEECCCC----------------cEEEEEECCCCcccCceEE-----CCEEEEEecCCEEEEEcCC-
Confidence 3333 3334 66666421 1111222222222223332 3457778889999999988
Q ss_pred CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
++.......+.. ...++.. .+++. +..++.++.|..+|.. +
T Consensus 126 g~~~~~~~~~~~-~~~~~~~---~~~g~-l~vgt~~~~l~~~d~~----------------------------------g 166 (330)
T 3hxj_A 126 GTEKWRFKTKKA-IYATPIV---SEDGT-IYVGSNDNYLYAINPD----------------------------------G 166 (330)
T ss_dssp SCEEEEEECSSC-CCSCCEE---CTTSC-EEEECTTSEEEEECTT----------------------------------S
T ss_pred CCEEEEEcCCCc-eeeeeEE---cCCCE-EEEEcCCCEEEEECCC----------------------------------C
Confidence 776655543322 1122221 23444 6667778889988865 2
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEe
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG 325 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~ 325 (1088)
..+..+......+.++...+++...+.. +.+..+| .+++. +. ........+.++... +..|..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~--------~~--~~~~~~~~~~~~~~~~~g~l~v~t 232 (330)
T 3hxj_A 167 TEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE--------KW--NFYAGYWTVTRPAISEDGTIYVTS 232 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE--------EE--EECCSSCCCSCCEECTTSCEEEEE
T ss_pred CEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE--------EE--EEccCCcceeceEECCCCeEEEEc
Confidence 2233333344556677777777755544 7788898 44321 11 222333456677777 44788888
Q ss_pred CCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 326 ~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
.++.+..++.+++.+..+..... .+.++.+.+++. |..++.+|.+..+|.+++. .+....
T Consensus 233 ~~~gl~~~~~~g~~~~~~~~~~~-~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~~------------------~~~~~~ 292 (330)
T 3hxj_A 233 LDGHLYAINPDGTEKWRFKTGKR-IESSPVIGNTDT-IYFGSYDGHLYAINPDGTE------------------KWNFET 292 (330)
T ss_dssp TTTEEEEECTTSCEEEEEECSSC-CCSCCEECTTSC-EEEECTTCEEEEECTTSCE------------------EEEEEC
T ss_pred CCCeEEEECCCCCEeEEeeCCCC-ccccceEcCCCe-EEEecCCCCEEEECCCCcE------------------EEEEEc
Confidence 88889999888887777665443 344566665664 6677888888888864321 111111
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
+ ...+.++...+++.+++++.+|.++..
T Consensus 293 ~------------~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 293 G------------SWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp S------------SCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred C------------CccccceEEcCCCEEEEEcCCCeEEEE
Confidence 1 223556667778999999999988743
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-05 Score=96.98 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=40.3
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|.|+.||+ +|+.+.++..+. +++.-.+...+.+++.|+.||.++.||.++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT--IFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ceeEEEEECCCCCeEeEccCCC--CccCccceECCCEEEEECCCCcEEEEECCC
Confidence 478999999 888888876554 344445666788999999999999999853
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.6e-06 Score=94.54 Aligned_cols=252 Identities=8% Similarity=-0.150 Sum_probs=152.0
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE----------CCCEEEEEEeccCCCCCCCC
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----------gd~~v~iw~l~~~~~~~~~~ 114 (1088)
+|.|+|..+++.+.++..... + ++.++ ||++ .+.++. .+++|.+||+.+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~s-------pDg~---~lyVan~~~~r~~~G~~~~~VsviD~~T~------- 106 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAG-------HSGS---DFALASTSFARSAKGKRTDYVEVFDPVTF------- 106 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEEC-------TTSS---CEEEEEEEETTTTSSSEEEEEEEECTTTC-------
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEEC-------CCCC---EEEEEcccccccccCCCCCEEEEEECCCC-------
Confidence 899999999999999997554 4 79999 8884 444443 2688999999863
Q ss_pred CCccccccceeeeccCC-------CCcEEEEEEecccCCCCEEEEEEc--CCcEEE--EEcCCCceEEEeccCCceeEEE
Q 001391 115 QPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGCS--DNSIRV--WDISNSSIILEVHSPERCLLYS 183 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h-------~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~i--Wd~~~~~~~~~~~~~~~~~~~s 183 (1088)
+.+.++... -.....++|+| ||++|+++.. ++.|.+ +|+.+ +.++..+....+
T Consensus 107 --------~vv~~I~v~~~~~~~~g~~P~~ia~Sp---DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~-- 170 (368)
T 1mda_H 107 --------LPIADIELPDAPRFSVGPRVHIIGNCA---SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHI-- 170 (368)
T ss_dssp --------CEEEEEEETTSCSCCBSCCTTSEEECT---TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCC--
T ss_pred --------CEEEEEECCCccccccCCCcceEEEcC---CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEE--
Confidence 444444321 12456799999 9999988864 467888 98877 444433221111
Q ss_pred EeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE----EEeCCCCC
Q 001391 184 MKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF----RLVGHEGS 258 (1088)
Q Consensus 184 ~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~gh~~~ 258 (1088)
.++ ...+++.+.||.+.+.++.+.... .++... .+.-...+
T Consensus 171 ------~p~g~~~~~~~~~dg~~~~vd~~~~~~~----------------------------~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 171 ------HPGAAATHYLGSCPASLAASDLAAAPAA----------------------------AGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp ------EEEETTEEECCCCTTSCEEEECCSSCCC----------------------------CEECCCCSCTTSCBCSCC
T ss_pred ------ccCCCeEEEEEcCCCCEEEEECcccccc----------------------------CCeEEEEeeeeeeCCCCc
Confidence 122 234455667888888887620000 011000 00111223
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee-----ccC---cceEEEEEC--CCEEEEEeC--
Q 001391 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----GHN---ARVWDCCLT--DSFIITAGE-- 326 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~-----~h~---~~I~~v~~~--~~~l~sg~~-- 326 (1088)
. . .++++.++..+. +.|.+.|...... +.+....+. .+. .....++++ +..++.+..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~------~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~ 285 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGA------TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCC------EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcc------eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence 2 3 566666666656 8899999865321 111100110 010 111114565 455554322
Q ss_pred -------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe-CCCCEEEEEcCC
Q 001391 327 -------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 327 -------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~-~Dg~I~iwd~~~ 379 (1088)
++.+.++|. +++.+..+.... ..+.++|+||++ ++++.. .++.|.++|+.+
T Consensus 286 ~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 286 SRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred cCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 235669999 777777776544 378999999997 567776 599999999954
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4e-05 Score=85.10 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=124.3
Q ss_pred CCCceEEecCCCce-----eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEee---eCCcceEEEEec
Q 001391 3 KKDLSEWRLDVGQY-----LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV---FHGIRLHGISCN 74 (1088)
Q Consensus 3 d~~i~iWdl~~g~~-----~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~---~~~~~V~~i~~s 74 (1088)
++.|.+||..+++. ...|.+++++ |+ ++++++. ...|.+||..+++....... ....++.+++++
T Consensus 70 ~~~i~~~d~~~~~~~~~~~~~~v~~i~~~--~d----g~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d 142 (326)
T 2ghs_A 70 ERELHELHLASGRKTVHALPFMGSALAKI--SD----SKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMH 142 (326)
T ss_dssp GTEEEEEETTTTEEEEEECSSCEEEEEEE--ET----TEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEECCCcceEEEEe--CC----CeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC
Confidence 45688888887752 2468899999 88 7777765 44599999988875433222 123468899998
Q ss_pred ccccccCCCccceeeEEEEECC----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGE----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l 150 (1088)
|+|+ .++...++ ....||.+. .. .... +..+......++|+| +++.|
T Consensus 143 -------~~G~---l~v~~~~~~~~~~~~~l~~~~-~g------------~~~~---~~~~~~~~~~i~~s~---dg~~l 193 (326)
T 2ghs_A 143 -------PSGA---LWIGTMGRKAETGAGSIYHVA-KG------------KVTK---LFADISIPNSICFSP---DGTTG 193 (326)
T ss_dssp -------TTSC---EEEEEEETTCCTTCEEEEEEE-TT------------EEEE---EEEEESSEEEEEECT---TSCEE
T ss_pred -------CCCC---EEEEeCCCcCCCCceEEEEEe-CC------------cEEE---eeCCCcccCCeEEcC---CCCEE
Confidence 7772 33333332 345566655 21 0111 112234567899999 99876
Q ss_pred EEE-EcCCcEEEEEcC--CC-ce-----EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCC
Q 001391 151 AIG-CSDNSIRVWDIS--NS-SI-----ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (1088)
Q Consensus 151 asg-s~Dg~V~iWd~~--~~-~~-----~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~ 221 (1088)
+.+ +.++.|.+|++. ++ .. ...+... ......+.+ ++++.+.++....+.|.+|+..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~---d~~G~lwva~~~~~~v~~~d~~---------- 259 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVC---DAEGHIWNARWGEGAVDRYDTD---------- 259 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEE---CTTSCEEEEEETTTEEEEECTT----------
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEE---CCCCCEEEEEeCCCEEEEECCC----------
Confidence 555 457899999986 55 32 2222111 122334444 5677777666667888888864
Q ss_pred CCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc-CCCCEEEEEE
Q 001391 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVS 275 (1088)
Q Consensus 222 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s-p~g~~l~s~s 275 (1088)
++.+..+..+...+.+++|. |+++.|..++
T Consensus 260 ------------------------g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 260 ------------------------GNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ------------------------CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred ------------------------CCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 33445566666789999998 8887765444
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.38 E-value=0.02 Score=73.76 Aligned_cols=147 Identities=10% Similarity=0.183 Sum_probs=84.2
Q ss_pred CCCeEEEec----------CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeec-CCCeEEEEECCCCeEEEEe
Q 001391 483 IDDWVALGD----------GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKS-LGHRFIFTADPKGRLKLWQ 551 (1088)
Q Consensus 483 ~~~~la~g~----------~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~L~s~~~dg~i~vwd 551 (1088)
...++++|+ ..|.|++|++.+. +.++.. ... +.+.+.+.. .+|++|++. ...+++|+
T Consensus 843 ~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~----kL~lv~--~~~----v~g~v~al~~~~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 843 PNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG----KLQTVA--EKE----VKGAVYSMVEFNGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp CCCEEEEEEEECCTTCSSCCCEEEEEEEEETT----EEEEEE--EEE----ESSCEEEEEEETTEEEEEE--TTEEEEEE
T ss_pred CCEEEEEEeeecCCCCCCCCceEEEEEEEECC----EEEEEE--EEE----cCCcCEEEeeeCCEEEEEc--CCEEEEEE
Confidence 347888876 3588999999732 222211 111 112222222 356655544 46899999
Q ss_pred cCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceee
Q 001391 552 LCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF 631 (1088)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~ 631 (1088)
+...+. +.+... .+. .|..+.....++++++|+.-..|.++.+..... ++...+.
T Consensus 911 l~~~~~-----------L~~~~~---~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~---------~L~~~a~- 965 (1158)
T 3ei3_A 911 WTTEKE-----------LRTECN---HYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG---------NFEEIAR- 965 (1158)
T ss_dssp ECTTSC-----------EEEEEE---ECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTT---------EEEEEEE-
T ss_pred CCCCce-----------EEEEee---ccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC---------eEEEEEe-
Confidence 974321 111011 111 133334444588999999999998877653211 3333321
Q ss_pred cccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecC
Q 001391 632 KGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 632 ~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
.-....+|++.+.. + ..++.+-.+|.+.+...+..
T Consensus 966 --D~~~~~vta~~~ld---~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 966 --DFNPNWMSAVEILD---D-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp --CCSCBCEEEEEEEE---T-TEEEEEETTSEEEEEEECTT
T ss_pred --ecccccEEEEEEEc---c-CcEEEEcCCCcEEEEecCCC
Confidence 11114699999983 3 47778889999999888763
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.5e-06 Score=91.38 Aligned_cols=278 Identities=9% Similarity=-0.034 Sum_probs=165.7
Q ss_pred CCCCceEEecCCCcee-------eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 2 GKKDLSEWRLDVGQYL-------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~-------~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.++.|..|| .+++.. ..+.++.+. ++ + .|.+|+.+ |..||. +|+.+..+..... ......+.
T Consensus 38 ~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~--~~----g-~l~v~t~~-l~~~d~-~g~~~~~~~~~~~-~~~~~~~~ 106 (330)
T 3hxj_A 38 SNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG--KD----G-TIYFGSDK-VYAINP-DGTEKWRFDTKKA-IVSDFTIF 106 (330)
T ss_dssp TTTTTEEEC-TTSCEEESSCGGGEEEECCEET--TT----T-EECCSSCE-EEEECC-CGGGGGGSCC------CCEEEE
T ss_pred CCCEEEEEC-CCCcEEEEEecCCCcccceEEe--cC----C-cEEEecCc-EEEECC-CCcEEEEEECCCC-cccCceEE
Confidence 366788888 777621 234566665 55 4 45555545 889986 6666544443221 12222222
Q ss_pred ccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
++ .+.+...++.+..+|.. .. .......+...+.++...+ ++. |..++
T Consensus 107 --------~~----~l~v~t~~~~l~~~d~~-g~---------------~~~~~~~~~~~~~~~~~~~---~g~-l~vgt 154 (330)
T 3hxj_A 107 --------ED----ILYVTSMDGHLYAINTD-GT---------------EKWRFKTKKAIYATPIVSE---DGT-IYVGS 154 (330)
T ss_dssp --------TT----EEEEECTTSEEEEECTT-SC---------------EEEEEECSSCCCSCCEECT---TSC-EEEEC
T ss_pred --------CC----EEEEEecCCEEEEEcCC-CC---------------EEEEEcCCCceeeeeEEcC---CCE-EEEEc
Confidence 33 55555557888888866 22 1222223334456666665 665 66677
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
.++.|..+|.. ++.......+.. .+.++.. ..++.+. .++ +.|..+| .
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~---d~~g~l~-v~t--~~l~~~d-~----------------------- 202 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTNDA-ITSAASI---GKDGTIY-FGS--DKVYAIN-P----------------------- 202 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSSC-CCSCCEE---CTTCCEE-EES--SSEEEEC-T-----------------------
T ss_pred CCCEEEEECCC-CCEeEEEecCCC-ceeeeEE---cCCCEEE-EEe--CEEEEEC-C-----------------------
Confidence 88999999998 776655543321 1222222 2345444 444 8888888 5
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v 314 (1088)
++..+.........+.++...++|. +..++.++.+..++.... .+. ........+.++
T Consensus 203 ----------~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~---------~~~--~~~~~~~~~~~~ 260 (330)
T 3hxj_A 203 ----------DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGT---------EKW--RFKTGKRIESSP 260 (330)
T ss_dssp ----------TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSC---------EEE--EEECSSCCCSCC
T ss_pred ----------CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCC---------EeE--EeeCCCCccccc
Confidence 3444444554556678888888875 445566777888874332 121 222222223344
Q ss_pred EEC-CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 315 CLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 315 ~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+. +..|..++.+|.+..+|.+++.+..+..... .+.++...+++. |..++.+|.+++...+
T Consensus 261 ~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~-~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 261 VIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSW-IIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp EECTTSCEEEECTTCEEEEECTTSCEEEEEECSSC-CCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred eEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCc-cccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 555 6788889999999999988887777655444 477787878876 5668899999988764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5e-05 Score=93.17 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=39.9
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|.|..||+ +++.+..+... . ++++..+..++.+++.++.||.+++||..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-S-PWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-S-SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cEEEEEeCCCCcEEeecCCC-C-CCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 78999999 78888777543 2 456666777888899999999999999853
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-07 Score=105.49 Aligned_cols=198 Identities=10% Similarity=-0.048 Sum_probs=104.7
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
.+++.+.|+.|..||..++. .+..+.. +.+.+..+.+ ++..+++++.|+.|+.||..+++
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~---------------~~W~~~~--~~~~s~p~~~---~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGS---------------IKWTLKE--DPVLQVPTHV---EEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp EEEEEETTSEEEEEETTTCC---------------EEEEEEC--CCSCCCC--------CCEEECTTTCCEEEC-----C
T ss_pred EEEEEcCCCEEEEEECCCCC---------------EEEEecC--CCceecceEc---CCCEEEEeCCCCEEEEEECCCCc
Confidence 66677779999999988543 3333333 3455555555 77778888899999999999988
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
.+.....+......+. ....++..|++|+.++.|+.||.. +++.
T Consensus 71 ~~w~~~~~~~~~~~~s---p~~~~~~~v~~g~~dg~v~a~D~~---------------------------------tG~~ 114 (369)
T 2hz6_A 71 GLTKLPFTIPELVQAS---PCRSSDGILYMGKKQDIWYVIDLL---------------------------------TGEK 114 (369)
T ss_dssp CSEECSCCHHHHHTTC---SCC-----CCCCEEEEEEEEECCC-------------------------------------
T ss_pred eeeeeeccCccccccC---ceEecCCEEEEEeCCCEEEEEECC---------------------------------CCcE
Confidence 7666543321111000 000134577888899999999998 4555
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-----CEEEE
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIIT 323 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-----~~l~s 323 (1088)
+..+..+. ...++|++..+++++.|+.|+.||..+++. .-.+ ..... ....+.+ ..++.
T Consensus 115 ~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-----~W~~---~~~~~----~~~~~~~~~~~~~~v~~ 178 (369)
T 2hz6_A 115 QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-----RWNA---TYFDY----AASLPEDDVDYKMSHFV 178 (369)
T ss_dssp ----------------------EEEEEEEEEEECCCSSSSSC-----CCEE---EEEEE----CCBCCCCCTTCCCCEEE
T ss_pred EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE-----EEeE---ecccc----cCccccCCccccceEEE
Confidence 55544433 234567888999999999999999988743 1111 11111 1122222 67888
Q ss_pred EeCCCcEEEEcC-CCceeEEEcccCCCCeEE-EEEcCCC
Q 001391 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR-CLYDSLS 360 (1088)
Q Consensus 324 g~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~-l~~~~dg 360 (1088)
++.||.++.||. +|+.+..+... . ++.. ..+++++
T Consensus 179 ~~~dg~v~a~d~~tG~~~W~~~~~-~-pv~~~~~~~~dg 215 (369)
T 2hz6_A 179 SNGDGLVVTVDSESGDVLWIQNYA-S-PVVAFYVWQREG 215 (369)
T ss_dssp EETSCEEEEECTTTCCEEEEEECS-S-CEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCcEEEEecCC-C-ceEEEEEecCCc
Confidence 999999999999 88888776633 2 4443 2334444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-05 Score=98.08 Aligned_cols=200 Identities=8% Similarity=0.012 Sum_probs=121.1
Q ss_pred CCCCcEEEEEEecccCCCCEEEEE-----EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC-
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIG-----CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN- 203 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasg-----s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg- 203 (1088)
+|...+..++|+| ||++||-+ +.+.+|++||+.+++.+.......+ ..++++ + |+..|+.+..+.
T Consensus 126 ~~~~~l~~~~~Sp---Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k--~~~~~W---s-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSR---DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVK--FSGISW---L-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECT---TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEE--SCCCEE---E-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECC---CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCce--eccEEE---e-CCCEEEEEEecCc
Confidence 4666899999999 99988743 2335799999999986543111110 112232 4 677777776663
Q ss_pred ------------eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC-CCCCEEEEEEcCCCCE
Q 001391 204 ------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 204 ------------~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~v~~sp~g~~ 270 (1088)
.|++|++.+.. .....+..... |...+..+.|+|||++
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~-----------------------------~~~~~v~~~~~~~~~~~~~~~~SpDg~~ 247 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQ-----------------------------EDDRLVFGAIPAQHHRYVGATVTEDDRF 247 (693)
T ss_dssp C-------CCCCEEEEEETTSCG-----------------------------GGCEEEESCSGGGCCSEEEEEECTTSCE
T ss_pred ccccccccCCCcEEEEEECCCCc-----------------------------ccceEEEecCCCCCeEEEEEEEcCCCCE
Confidence 38888876211 01123333333 5566889999999998
Q ss_pred EEEEEC----CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE-CCC-EEEEEeCC---CcEEEEcCC-Cce-
Q 001391 271 LVSVSD----DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-TDS-FIITAGED---CTCRVWGSD-GKQ- 339 (1088)
Q Consensus 271 l~s~s~----Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~-~~~-~l~sg~~D---g~i~vWd~~-~~~- 339 (1088)
|+.... +..|+++|+.++.. .+. .+..+......... .+. ++++...+ +.|.++++. +..
T Consensus 248 l~~~~~~~~~~~~i~~~d~~~~~~-------~~~--~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~ 318 (693)
T 3iuj_A 248 LLISAANSTSGNRLYVKDLSQENA-------PLL--TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA 318 (693)
T ss_dssp EEEEEESSSSCCEEEEEETTSTTC-------CCE--EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred EEEEEccCCCCcEEEEEECCCCCC-------ceE--EEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 754332 35899999877521 111 34444444444322 244 44454443 578899984 332
Q ss_pred -eEEEcccCCCCeEEEEEcCCCCEEEEEeCCC---CEEEEEcCC
Q 001391 340 -LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS---AIKVHQFQA 379 (1088)
Q Consensus 340 -~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg---~I~iwd~~~ 379 (1088)
...+..|... +. .|+++++.|+....++ .|++|++.+
T Consensus 319 ~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 319 HWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp GCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred ccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 3566666663 44 7888888777666544 577787754
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.8e-05 Score=81.40 Aligned_cols=226 Identities=10% Similarity=0.042 Sum_probs=134.2
Q ss_pred eEEEEEeccCCCCCCCC-EEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CC
Q 001391 20 ISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~-~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd 96 (1088)
..+..|+ |+ ++ ++.++. ++.|..|+. +++ +..+.... ..+.+++++ ++| .++++. ++
T Consensus 47 ~egp~~~--~~----g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~-~~~~gl~~d-------~dG----~l~v~~~~~ 106 (305)
T 3dr2_A 47 SEGPAWW--EA----QRTLVWSDLVGRRVLGWRE-DGT-VDVLLDAT-AFTNGNAVD-------AQQ----RLVHCEHGR 106 (305)
T ss_dssp EEEEEEE--GG----GTEEEEEETTTTEEEEEET-TSC-EEEEEESC-SCEEEEEEC-------TTS----CEEEEETTT
T ss_pred ccCCeEe--CC----CCEEEEEECCCCEEEEEeC-CCC-EEEEeCCC-CccceeeEC-------CCC----CEEEEECCC
Confidence 4578899 88 77 555555 589999998 455 34444433 368999999 787 555554 46
Q ss_pred CEEEEEEeccCCCCCCCCCCcccccccee-eeccCC-CCcEEEEEEecccCCCCEEEE----EEc-------------CC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLV-QSLPRL-SHWVFDVCFLKVCNGNRSLAI----GCS-------------DN 157 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~-~~l~~h-~~~I~~v~f~p~~~d~~~las----gs~-------------Dg 157 (1088)
+.|.+|+.+ .. .+.+ ....+. ...+.++++.| +|.+.+| |.. .+
T Consensus 107 ~~v~~~~~~-g~-------------~~~~~~~~~~~~~~~~~~i~~d~---dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 107 RAITRSDAD-GQ-------------AHLLVGRYAGKRLNSPNDLIVAR---DGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp TEEEEECTT-SC-------------EEEEECEETTEECSCCCCEEECT---TSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred CEEEEECCC-CC-------------EEEEEeccCCCccCCCCCEEECC---CCCEEEeCcCCCccccccccccccccCCC
Confidence 889999865 21 1111 111221 24577899999 9998876 332 24
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC------CeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
.|..||..+++..... . ......+++ ++++..|+.+... +.|.+|++.... ..
T Consensus 170 ~v~~~d~~~g~~~~~~-~--~~~p~gl~~---spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-------------- 228 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA-D--LDHPNGLAF---SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LH-------------- 228 (305)
T ss_dssp EEEEECSSSCCCEEEE-E--ESSEEEEEE---CTTSSEEEEEECCC---CCCEEEEEEEETTE-EE--------------
T ss_pred eEEEEcCCCCcEEEEe-c--CCCCcceEE---cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-cc--------------
Confidence 5777777666544322 1 111233444 6788877666554 789999987111 00
Q ss_pred CCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
..... .....+...+++++++|...++. .+ .|.+|+.... .+. .+..+. .+
T Consensus 229 -------------~~~~~--~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~---------~~~--~~~~~~-~~ 279 (305)
T 3dr2_A 229 -------------DRRHF--ASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQ---------LLG--HIPTPG-TA 279 (305)
T ss_dssp -------------EEEEE--ECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSC---------EEE--EEECSS-CC
T ss_pred -------------CCeEE--EECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCC---------EEE--EEECCC-ce
Confidence 01111 11123456678999999955554 44 4899998542 222 222222 57
Q ss_pred EEEEEC--CCEEEEEeCCCcEEE
Q 001391 312 WDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 312 ~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
.+++|. ++.|..++.++..++
T Consensus 280 ~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 280 SNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CEEEECTTSCEEEEEETTEEEEE
T ss_pred eEEEEeCCCCEEEEEcCCeEEEE
Confidence 888896 456766666654443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=3e-05 Score=86.96 Aligned_cols=270 Identities=9% Similarity=-0.031 Sum_probs=156.5
Q ss_pred CceEEecCCCceeeeeE-----EEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeC----
Q 001391 5 DLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH---- 64 (1088)
Q Consensus 5 ~i~iWdl~~g~~~~~V~-----~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~---- 64 (1088)
+|.+.|..+++..+.|. .++|+ || +++|.++. ++.|.+||+.+++.++++....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~s--pD----g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAG--HS----GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEEC--TT----SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEEC--CC----CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 67799999988433321 79999 99 77777764 4789999999999999998641
Q ss_pred --CcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEE--EEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 65 --GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKL--FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 65 --~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~i--w~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
+...++++++ |||+ .++++. + +..+.+ +|..+ ++.+.- .+. .
T Consensus 121 ~~g~~P~~ia~S-------pDGk---~lyVan~~~~~~v~V~~iD~~t------------------v~~i~v-~~~---~ 168 (368)
T 1mda_H 121 SVGPRVHIIGNC-------ASSA---CLLFFLFGSSAAAGLSVPGASD------------------DQLTKS-ASC---F 168 (368)
T ss_dssp CBSCCTTSEEEC-------TTSS---CEEEEECSSSCEEEEEETTTEE------------------EEEEEC-SSC---C
T ss_pred ccCCCcceEEEc-------CCCC---EEEEEccCCCCeEEEEEEchhh------------------ceEEEC-CCc---e
Confidence 1246889999 8884 444443 3 467888 87763 111110 010 1
Q ss_pred EEecccCCC-CEEEEEEcCCcEEEEEcCC-----CceEEE----eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 139 CFLKVCNGN-RSLAIGCSDNSIRVWDISN-----SSIILE----VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 139 ~f~p~~~d~-~~lasgs~Dg~V~iWd~~~-----~~~~~~----~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
.+.| ++ ..+++.+.|+.+.+.|+.+ ++.... +....... . .+++..++..+. +.+.+.
T Consensus 169 ~~~p---~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~----~----~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 169 HIHP---GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA----Q----ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp CCEE---EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE----E----ETTTTEEEECBS-SCCEEE
T ss_pred EEcc---CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc----c----cccCCEEEEEcC-CEEEEE
Confidence 2334 33 3445566788888888876 332211 11111111 1 133444444444 889998
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---------CCc
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRS 279 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---------Dg~ 279 (1088)
|....... .+..|............. ......++++|+++++..+.. +..
T Consensus 237 D~~~~~~~-------------------v~~~~~~~~~~~~~~~~~--p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 237 DIPAAGAT-------------------MKAAIDGNESGRKADNFR--SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp ECCSSCCE-------------------EECCCCSSCTHHHHTTEE--ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred ECCCCcce-------------------EEEEEEeccccccccccc--cCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 88511000 000000000000000000 011112679999988776532 235
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEe-CCCcEEEEcC-CCceeEEEcccCCCCeEEE
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRC 354 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~-~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l 354 (1088)
+.++|+.+.+ .+. .+... ...+.++|+ +. ++++.. .+++|.++|+ +++.+.++..... -+.+
T Consensus 296 ~~ViD~~t~~--------vv~--~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~--P~~i 362 (368)
T 1mda_H 296 TSSVTASVGQ--------TSG--PISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG--PESL 362 (368)
T ss_dssp EEEEESSSCC--------EEE--CCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC--CCEE
T ss_pred EEEEECCCCe--------EEE--EEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC--CCEE
Confidence 6699999863 333 12111 257889998 44 667777 5999999999 8888888876554 5677
Q ss_pred EEcC
Q 001391 355 LYDS 358 (1088)
Q Consensus 355 ~~~~ 358 (1088)
++.+
T Consensus 363 ~~~~ 366 (368)
T 1mda_H 363 SVQN 366 (368)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 7654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00056 Score=77.13 Aligned_cols=266 Identities=11% Similarity=0.046 Sum_probs=160.1
Q ss_pred CeEEEEECCC-----CeeEEEEeeeC-CcceEEEEecc----cccccC--CCccceeeEEEEEC--CCEEEEEEeccCCC
Q 001391 44 SQVLLYDLEA-----GTLIRPFQVFH-GIRLHGISCNF----INCTEG--SVSTRVTFEVALFG--EKRVKLFELNFELS 109 (1088)
Q Consensus 44 ~~I~vwd~~t-----g~~~~~~~~~~-~~~V~~i~~s~----~~~~~~--~d~~~~~~~la~~g--d~~v~iw~l~~~~~ 109 (1088)
..|.+.|+.. +++++.+.... +...|.+-|.. .+.... .+. ..|.+.+ +++|.|+|+.+..
T Consensus 43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r----~~l~v~~l~s~~I~viD~~t~p- 117 (462)
T 2ece_A 43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIER----RFLIVPGLRSSRIYIIDTKPNP- 117 (462)
T ss_dssp CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCS----CEEEEEBTTTCCEEEEECCSCT-
T ss_pred CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccC----CEEEEccCCCCeEEEEECCCCC-
Confidence 4788899886 88888887643 22466666620 001112 343 4555554 7899999987432
Q ss_pred CCCCCCCccccccceeeecc------C-CCCcEEEEEEecccCCCCEEEEEEcC------CcEEEEEcCCCceEEEeccC
Q 001391 110 PNSQYQPETCVNLSLVQSLP------R-LSHWVFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~------~-h~~~I~~v~f~p~~~d~~~lasgs~D------g~V~iWd~~~~~~~~~~~~~ 176 (1088)
.+.+..+.+. . -...-..+..+| +| .++++..+ +.|.+.|..+++.+.++...
T Consensus 118 ----------~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p---dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~ 183 (462)
T 2ece_A 118 ----------REPKIIKVIEPEEVKKVSGYSRLHTVHCGP---DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID 183 (462)
T ss_dssp ----------TSCEEEEEECHHHHHHHHCEEEEEEEEECS---SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB
T ss_pred ----------CCceeeeeechhhcccccCCCcccceeECC---Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC
Confidence 0134444442 1 112456778889 88 66666555 78999999999999988743
Q ss_pred Cc--eeEEEEeeecCCCCCcEEEEEe-------------------cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 177 ER--CLLYSMKLWGDNLEALRIASGT-------------------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 177 ~~--~~~~s~~~~~~s~~~~~l~sg~-------------------~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
.. ...|.+.+ +|+++.+++.. ..++|.+||+.
T Consensus 184 ~~~~~~~Yd~~~---~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~------------------------ 236 (462)
T 2ece_A 184 RGDQYLAYDFWW---NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR------------------------ 236 (462)
T ss_dssp CTTCCCCCCEEE---ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT------------------------
T ss_pred CCCccccceEEE---CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC------------------------
Confidence 22 22333333 46777777774 36899999998
Q ss_pred eeEecccccceeeeEEEeCC--CCCEEEEEE--cCCCCEEEEEE------CCCcEEEEEcCCCcccCCCCceee--ecee
Q 001391 236 CFKLQDQQHTAVNLFRLVGH--EGSIFRIEW--SSCGSKLVSVS------DDRSARIWEVRAEYWKDSDSIEEV--GSSV 303 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh--~~~V~~v~~--sp~g~~l~s~s------~Dg~v~iWd~~~~~~~~~~~~~~i--~~~~ 303 (1088)
+.+.+.++.-. ......+.| +|+++++..++ .+++|.+|....+... ..+.+ ....
T Consensus 237 ---------~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~---~~~vIdi~~~~ 304 (462)
T 2ece_A 237 ---------KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN---AEKVIEIPAEP 304 (462)
T ss_dssp ---------TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE---EEEEEEECCEE
T ss_pred ---------CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee---EEEEEeCCCcc
Confidence 44555555532 133456666 99999877665 5678888776543220 00111 0000
Q ss_pred eec-----------cCcceEEEEEC--CCEEEEEe-CCCcEEEEcCC----CceeEEEcccC---------CC----CeE
Q 001391 304 LYG-----------HNARVWDCCLT--DSFIITAG-EDCTCRVWGSD----GKQLKMIKEHI---------GR----GIW 352 (1088)
Q Consensus 304 ~~~-----------h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~~----~~~~~~~~~h~---------~~----~V~ 352 (1088)
..+ -......+.++ +.+|+.+. ..+.|.++|+. .+.+..+.... +. .-.
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr 384 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQ 384 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCC
Confidence 000 02346778887 56665554 46899999982 24444443220 00 236
Q ss_pred EEEEcCCCCEEEEEe
Q 001391 353 RCLYDSLSSLLVTAG 367 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~ 367 (1088)
.++++|||++|+++.
T Consensus 385 ~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 385 MLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSSEEEEEC
T ss_pred EEEEcCCCCEEEEEc
Confidence 889999999998887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00013 Score=81.59 Aligned_cols=244 Identities=9% Similarity=0.006 Sum_probs=141.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCCCeeEEEEee------eCCcceEEEEecccccccCCCcccee
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQV------FHGIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~tg~~~~~~~~------~~~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
.....|+++ |+ ++++++.. ++.++||.+.++++. .+.. .+-..+++++++ +++
T Consensus 17 ~~p~~va~~--~~----g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-------~~g---- 78 (343)
T 2qe8_A 17 LAPGNITLT--PD----GRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-------GNG---- 78 (343)
T ss_dssp SCEEEEEEC--TT----SCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-------SSS----
T ss_pred CCcceEEEC--CC----CCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-------CCC----
Confidence 467899999 98 88888854 243555555466543 2211 112468999998 776
Q ss_pred eEEEEE-C-----CCEEEEEEeccCCCCCCCCCCccccccceeeecc------CCCCcEEEEEEecccCCCCEE-EEEE-
Q 001391 89 FEVALF-G-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP------RLSHWVFDVCFLKVCNGNRSL-AIGC- 154 (1088)
Q Consensus 89 ~~la~~-g-----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~------~h~~~I~~v~f~p~~~d~~~l-asgs- 154 (1088)
.+.++- + ++.|.+||+.+.. .+..+. .+...+..++++| ++..+ ++-.
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~---------------~~~~~~~~~~~~~~~~~~~~v~vd~---~~g~~yvtd~~ 140 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQ---------------LSRVIYLPPPITLSNSFVNDLAVDL---IHNFVYISDPA 140 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTE---------------EEEEEECCTTTSCTTCCCCEEEEET---TTTEEEEEECC
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCe---------------EEEEEECChhhcccccccceEEEec---CCCEEEEEcCc
Confidence 555543 3 4789999987432 222221 2335678999998 65544 4444
Q ss_pred --cCCcEEEEEcCCCceEEEeccCCc----------------------------eeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 155 --SDNSIRVWDISNSSIILEVHSPER----------------------------CLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 155 --~Dg~V~iWd~~~~~~~~~~~~~~~----------------------------~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
.++.|.+||+.+++....+..+.. .....+++ ++++..|+.+...+.
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~---s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL---DAENEWLYLSPMHST 217 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE---CTTSCEEEEEESSCS
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe---ccCCCEEEEEeCCCC
Confidence 578999999998877665533100 01233444 567766666655543
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee--eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN--LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
++|.+.+...... . . ...+. .....++.+...+++++++|..+++...++.|.+
T Consensus 218 -~l~~~~~~~~~~~-----------~-~-----------~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~ 273 (343)
T 2qe8_A 218 -SMYRIKSADLSNL-----------Q-L-----------TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGV 273 (343)
T ss_dssp -EEEEEEHHHHTCT-----------T-C-----------CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEE
T ss_pred -eEEEEEHHHhcCC-----------C-C-----------ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEE
Confidence 3444331000000 0 0 00000 0012244456678999999999999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEE
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vW 333 (1088)
||..+++. ..+ ....+...+.+++|. +.++++.+..+.+.+|
T Consensus 274 ~d~~~G~~------~~~---~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 274 ITSADRAY------KLL---VTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EETTTTEE------EEE---EECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred EECCCCCE------EEE---EECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 99844321 111 111234568889996 4566666655444333
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00024 Score=75.28 Aligned_cols=195 Identities=9% Similarity=-0.020 Sum_probs=129.3
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
...++|+ |+ +.+.++.. ++.|+++|+.+++.++++.........++++. .+ ..+++.+.+
T Consensus 23 ~~Gl~~~--~d----g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-------g~----~lyv~t~~~ 85 (266)
T 2iwa_A 23 TQGLVYA--EN----DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-------NE----KLYQVVWLK 85 (266)
T ss_dssp EEEEEEC--ST----TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-------TT----EEEEEETTC
T ss_pred cccEEEe--CC----CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-------CC----EEEEEEecC
Confidence 4689999 87 54444432 38999999999999999876444334566665 33 155566679
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.+.++|..+ ++.+.++..-.. ....+++ |++.|+++..++.|.++|..+.+.+..+.-.
T Consensus 86 ~~v~viD~~t---------------~~v~~~i~~g~~--~g~glt~---Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 86 NIGFIYDRRT---------------LSNIKNFTHQMK--DGWGLAT---DGKILYGSDGTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp SEEEEEETTT---------------TEEEEEEECCSS--SCCEEEE---CSSSEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred CEEEEEECCC---------------CcEEEEEECCCC--CeEEEEE---CCCEEEEECCCCeEEEEECCCCcEEEEEEEC
Confidence 9999999875 344555532111 1233666 7776666667899999999999888877633
Q ss_pred Cc--e--eEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 177 ER--C--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 177 ~~--~--~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
.. . ....+.+. ++.+.+....++.|.+-|.. +++.+..+
T Consensus 146 ~~~~p~~~~nele~~----dg~lyvn~~~~~~V~vID~~---------------------------------tg~V~~~I 188 (266)
T 2iwa_A 146 YNGHRVIRLNELEYI----NGEVWANIWQTDCIARISAK---------------------------------DGTLLGWI 188 (266)
T ss_dssp ETTEECCCEEEEEEE----TTEEEEEETTSSEEEEEETT---------------------------------TCCEEEEE
T ss_pred CCCcccccceeEEEE----CCEEEEecCCCCeEEEEECC---------------------------------CCcEEEEE
Confidence 21 1 23344442 45455555567899999998 44444444
Q ss_pred eCC-------------CCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCC
Q 001391 253 VGH-------------EGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 253 ~gh-------------~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~ 288 (1088)
.-. .....+|+|+|+++.+ +++.....+..-++...
T Consensus 189 ~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 189 LLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 321 1467899999998755 55667788888887654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00073 Score=76.22 Aligned_cols=204 Identities=14% Similarity=0.134 Sum_probs=127.7
Q ss_pred CCEEEEEe--CCeEEEEECCCC----eeEEEEe---ee---CCcceEEEEecccccccCCCccceeeEEEEECC------
Q 001391 35 LPFLLAGS--GSQVLLYDLEAG----TLIRPFQ---VF---HGIRLHGISCNFINCTEGSVSTRVTFEVALFGE------ 96 (1088)
Q Consensus 35 ~~~laag~--d~~I~vwd~~tg----~~~~~~~---~~---~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd------ 96 (1088)
+++|.+.. ++.|.|+|+.+. ++++++. .+ ...+-|.+.++ |+| .++.+.|+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-------pdG----i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-------PDA----IYISALGNEEGEGP 163 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-------SSC----EEEEEEEETTSCSC
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-------CCe----EEEEcCCCcCCCCC
Confidence 77777765 589999999765 6777773 11 11246788888 786 66766665
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccC--CC-CcEEEEEEecccCCCCEEEEEE-------------------
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LS-HWVFDVCFLKVCNGNRSLAIGC------------------- 154 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~--h~-~~I~~v~f~p~~~d~~~lasgs------------------- 154 (1088)
+.|.++|.++ ++.+.+... .. .--+++-|+| +++.+++..
T Consensus 164 g~v~vlD~~T---------------~~v~~~~~~~~~~~~~~Yd~~~~p---~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 164 GGILMLDHYS---------------FEPLGKWEIDRGDQYLAYDFWWNL---PNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp CEEEEECTTT---------------CCEEEECCSBCTTCCCCCCEEEET---TTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred CeEEEEECCC---------------CeEEEEEccCCCCccccceEEECC---CCCEEEEccCcCccccccccchhhhhhc
Confidence 7899999875 334444431 22 2235688899 999888773
Q ss_pred cCCcEEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEe------cCCeEEEEEeccCccccCCCCCCCccC
Q 001391 155 SDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGT------IYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~------~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
.+.+|.+||+.+++.+.++..+ .......+.+ .++|++.+++.+. .+++|.+|....++..
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f-~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~----------- 293 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRP-LHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN----------- 293 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEE-CSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-----------
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEe-eECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-----------
Confidence 3789999999999888888764 3333334443 2367888877766 4678988877611000
Q ss_pred CCCCCCCceeEecccccceeeeEEEe-------CCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCC
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAE 288 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~ 288 (1088)
..++.+.. .......+. +-......|.++|||++|..+.. .+.|.++|+...
T Consensus 294 --------~~~vIdi~-~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 294 --------AEKVIEIP-AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp --------EEEEEEEC-CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred --------EEEEEeCC-CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 00000000 000000000 00245778999999999866554 689999999743
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0024 Score=68.19 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=141.3
Q ss_pred CEEEEEeCCeEEEEECCCCeeE-----EEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLI-----RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELS 109 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~-----~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~ 109 (1088)
++|+.+..+.|+.+++...... ..+.... ..+++++++ ++++ .+.++ .+++.|..+++....
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~-~~~~gi~~d-------~~~~---~ly~~d~~~~~I~~~~~~g~~- 69 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPA-KVIIGLAFD-------CVDK---VVYWTDISEPSIGRASLHGGE- 69 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE-EEEEEEEEE-------TTTT---EEEEEETTTTEEEEEESSSCC-
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCC-CcEEEEEEe-------cCCC---EEEEEECCCCEEEEEecCCCC-
Confidence 3555555568999998765321 1222222 258999998 5432 44444 347899999986321
Q ss_pred CCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeec
Q 001391 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~ 188 (1088)
. ...+.........+++.| ++..|+.+ ...+.|.++++............ ......+++
T Consensus 70 ------------~--~~~~~~~~~~p~~ia~d~---~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i~v-- 129 (267)
T 1npe_A 70 ------------P--TTIIRQDLGSPEGIALDH---LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVNPRGIVT-- 129 (267)
T ss_dssp ------------C--EEEECTTCCCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEE--
T ss_pred ------------c--EEEEECCCCCccEEEEEe---cCCeEEEEECCCCEEEEEEcCCCCEEEEEECC-CCCccEEEE--
Confidence 1 111122224678999998 76655555 45678999998754332222211 112234444
Q ss_pred CCCCCcEE-EEEec--CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEE
Q 001391 189 DNLEALRI-ASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEW 264 (1088)
Q Consensus 189 ~s~~~~~l-~sg~~--dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~ 264 (1088)
++++..| ++... .+.|..+++. . .....+ .........+++
T Consensus 130 -d~~~g~lyv~~~~~~~~~I~~~~~d---------------------------------g-~~~~~~~~~~~~~P~gia~ 174 (267)
T 1npe_A 130 -DPVRGNLYWTDWNRDNPKIETSHMD---------------------------------G-TNRRILAQDNLGLPNGLTF 174 (267)
T ss_dssp -ETTTTEEEEEECCSSSCEEEEEETT---------------------------------S-CCCEEEECTTCSCEEEEEE
T ss_pred -eeCCCEEEEEECCCCCcEEEEEecC---------------------------------C-CCcEEEEECCCCCCcEEEE
Confidence 3433344 33322 3677777765 1 111111 123356889999
Q ss_pred cCCCCEE-EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEE-eCCCcEEEEcC-CCceeE
Q 001391 265 SSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA-GEDCTCRVWGS-DGKQLK 341 (1088)
Q Consensus 265 sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg-~~Dg~i~vWd~-~~~~~~ 341 (1088)
+|++++| ++-...+.|..++...... .. ...+ ......++..+..++.+ ...+.|.++|. +++.+.
T Consensus 175 d~~~~~lyv~d~~~~~I~~~~~~g~~~------~~----~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 175 DAFSSQLCWVDAGTHRAECLNPAQPGR------RK----VLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTEEEE------EE----EEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEecCCCce------EE----EecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceE
Confidence 9987766 4555668899999876321 11 1111 12334566665555444 45689999999 688888
Q ss_pred EEcccCCCCeEEEEEcCCCC
Q 001391 342 MIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 342 ~~~~h~~~~V~~l~~~~dg~ 361 (1088)
.+........+.+++.|++.
T Consensus 244 ~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 244 TFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EECCSSCCCCCCEEEECSCC
T ss_pred EEccccccccceeeecCccC
Confidence 87644321367788888763
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00031 Score=86.02 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=90.9
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC------CCEEEEEEeccC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG------EKRVKLFELNFE 107 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g------d~~v~iw~l~~~ 107 (1088)
+..|+.++ ++.|..+|.++|+++.++..........+..+|. ..++ .+++..+ ++.|..+|.++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v~~~----~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR----VVKG----KVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE----EETT----EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE----EECC----EEEEeCCCCCcCCCCEEEEEECCCC
Confidence 34566666 7999999999999998887632211111222211 0122 3333322 367888877653
Q ss_pred CCC----CCCCCCccccccc------------eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC--------------
Q 001391 108 LSP----NSQYQPETCVNLS------------LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-------------- 157 (1088)
Q Consensus 108 ~~~----~~~~~~~~~~~~~------------~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg-------------- 157 (1088)
... .....|....... .+....++......+++.| +..+++.+..++
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~---~~~~vy~~~~~g~~w~~~~~~~~~gd 265 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP---ELDLLYVGTGNGSPWNREVRSPGGGD 265 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET---TTTEEEEECCCEESSCHHHHSTTCCC
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC---CCCEEEEeCCCCCccccCCCCCCCCC
Confidence 300 0000000000000 0000001112223578888 788888887665
Q ss_pred -----cEEEEEcCCCceEEEeccCC----------ceeEEEEeeecCCCCCc---EEEEEecCCeEEEEEeccCccc
Q 001391 158 -----SIRVWDISNSSIILEVHSPE----------RCLLYSMKLWGDNLEAL---RIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 158 -----~V~iWd~~~~~~~~~~~~~~----------~~~~~s~~~~~~s~~~~---~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
.|.-+|..+++.+-+++... ...+..+. .++. .++.++.+|.++++|..+++..
T Consensus 266 ~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-----~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 266 NLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-----IDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-----ETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred ceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec-----cCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 39999999999987765321 11122222 1343 6888999999999999876644
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00038 Score=72.84 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=114.3
Q ss_pred eEEEEEeccCCCCCCCCEEEE-EeCC--eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 20 ISALCFVHLPSHLSSLPFLLA-GSGS--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laa-g~d~--~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
..+|.|+ . +.+..+ |.+| .|+++|+++|+.++++......--.++++. .+ ..+.+.+.+
T Consensus 45 tqGL~~~--~-----~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-------g~----~ly~ltw~~ 106 (262)
T 3nol_A 45 TEGFFYR--N-----GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-------KD----KIVGLTWKN 106 (262)
T ss_dssp EEEEEEE--T-----TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-------TT----EEEEEESSS
T ss_pred cceEEEE--C-----CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-------CC----EEEEEEeeC
Confidence 3567777 3 233333 4444 999999999999999886443222345554 33 256666779
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.+.++|.++ ++.+.++..-. ....+.+ |++.|+....++.|.++|..+.+.+.++...
T Consensus 107 ~~v~v~D~~t---------------~~~~~ti~~~~---eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 107 GLGFVWNIRN---------------LRQVRSFNYDG---EGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp SEEEEEETTT---------------CCEEEEEECSS---CCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred CEEEEEECcc---------------CcEEEEEECCC---CceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence 9999999885 44555554322 1223335 7776666656788999999999988887642
Q ss_pred C--c--eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 177 E--R--CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 177 ~--~--~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
. + ..+..+.+ .++.+.+..-.++.|.+.|..+++ .+..+
T Consensus 166 ~~g~~~~~lNELe~----~~G~lyan~w~~~~I~vIDp~tG~---------------------------------V~~~I 208 (262)
T 3nol_A 166 AHGEELPELNELEW----VDGEIFANVWQTNKIVRIDPETGK---------------------------------VTGII 208 (262)
T ss_dssp ETTEECCCEEEEEE----ETTEEEEEETTSSEEEEECTTTCB---------------------------------EEEEE
T ss_pred cCCccccccceeEE----ECCEEEEEEccCCeEEEEECCCCc---------------------------------EEEEE
Confidence 1 1 11222333 246555555567889999988433 33222
Q ss_pred eC------------CCCCEEEEEEcCCCCEEEEEECC
Q 001391 253 VG------------HEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 253 ~g------------h~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
.- -....++|+|+|+++.|...+..
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 21 12457899999998887776653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00081 Score=71.18 Aligned_cols=206 Identities=9% Similarity=0.010 Sum_probs=131.2
Q ss_pred cceeeeccCCC--CcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 122 LSLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 122 ~~~~~~l~~h~--~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.+.+.+++ |. .....++|+| ++.+.++.+. ++.|++.|+.+++.+.++..+.......+.+. .+.+.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~---dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~----g~~lyv 80 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE---NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL----NEKLYQ 80 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS---TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE----TTEEEE
T ss_pred ceEEEEEE-CCCCCCcccEEEeC---CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe----CCEEEE
Confidence 44555553 44 3468999998 8654444443 68999999999999988764433222233331 223344
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
+.-.++.+.++|.. +.+.+.++.-.... ...+++||+.++.+..+
T Consensus 81 ~t~~~~~v~viD~~---------------------------------t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs 125 (266)
T 2iwa_A 81 VVWLKNIGFIYDRR---------------------------------TLSNIKNFTHQMKD--GWGLATDGKILYGSDGT 125 (266)
T ss_dssp EETTCSEEEEEETT---------------------------------TTEEEEEEECCSSS--CCEEEECSSSEEEECSS
T ss_pred EEecCCEEEEEECC---------------------------------CCcEEEEEECCCCC--eEEEEECCCEEEEECCC
Confidence 44567899999988 56666666422111 23355678777777678
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccC---cceEEEEECCCEEEE-EeCCCcEEEEcC-CCceeEEEccc------
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---ARVWDCCLTDSFIIT-AGEDCTCRVWGS-DGKQLKMIKEH------ 346 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---~~I~~v~~~~~~l~s-g~~Dg~i~vWd~-~~~~~~~~~~h------ 346 (1088)
+.|.++|..+.+. ...+. ...+. ..++.+.|.+..+.. ...++.|.+-|. +++.+..+...
T Consensus 126 ~~l~viD~~t~~v-----~~~I~---Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~ 197 (266)
T 2iwa_A 126 SILYEIDPHTFKL-----IKKHN---VKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL 197 (266)
T ss_dssp SEEEEECTTTCCE-----EEEEE---CEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH
T ss_pred CeEEEEECCCCcE-----EEEEE---ECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 9999999988543 22221 11111 235666776545544 446789999999 88888877532
Q ss_pred ------CCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcC
Q 001391 347 ------IGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 347 ------~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~ 378 (1088)
.......|+++|+++ +++|+...+.+...++.
T Consensus 198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 198 IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 112368999999986 55666677888888873
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.4e-07 Score=100.67 Aligned_cols=180 Identities=8% Similarity=-0.069 Sum_probs=98.0
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++..|++++.|+.|+.||..+++.+.++.. .. +.+..+ ..++..+++++.||.|+.||..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~-~~s~p~---~~~g~~~v~~s~dg~l~a~d~~t------------- 68 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP-VLQVPT---HVEEPAFLPDPNDGSLYTLGSKN------------- 68 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC-SCCCC--------CCEEECTTTCCEEEC-----------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC-ceecce---EcCCCEEEEeCCCCEEEEEECCC-------------
Confidence 667899999999999999999999877764 11 111111 24566777888999999999972
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCC-CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG-SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
++.+.....+.. .+.+.-...++..+++++.|+.++.||..+++. +. .+
T Consensus 69 --------------------G~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~--------~w--~~ 118 (369)
T 2hz6_A 69 --------------------NEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEK--------QQ--TL 118 (369)
T ss_dssp ---------------------CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------
T ss_pred --------------------CceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcE--------EE--Ee
Confidence 322222222111 000000001345677888899999999998753 11 22
Q ss_pred eccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC---CEEEEEeCCCCEEEEEcCC
Q 001391 305 YGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS---SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 305 ~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg---~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..+. .+. .+-.+..+++++.|+.++.||. +|+.+..+..+. ....++.++. ..+++++.||.+..||..+
T Consensus 119 ~~~~-~~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 119 SSAF-ADS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp ----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred cCCC-ccc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 2221 111 1114678899999999999999 787766654321 1223333432 4577789999999999853
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00068 Score=81.21 Aligned_cols=46 Identities=20% Similarity=0.069 Sum_probs=31.9
Q ss_pred CCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCE
Q 001391 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1088)
Q Consensus 317 ~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~ 362 (1088)
.+.+++.++.||.++.||. +|+.+..+.......-..+.+..+|++
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~ 520 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence 4778888999999999998 899998886543311112334466653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00095 Score=69.18 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=96.4
Q ss_pred eEEEEEeccCCCCCCCCEEEE-EeC--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 20 ISALCFVHLPSHLSSLPFLLA-GSG--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laa-g~d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
..+|.|+ ++ .+..+ |.. ..|+++|+++|+.+.++......--.++++. .+ ..+.+.+.+
T Consensus 23 tqGL~~~--~~-----~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-------~~----~ly~ltw~~ 84 (243)
T 3mbr_X 23 TEGLFYL--RG-----HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-------RD----RLIQLTWRN 84 (243)
T ss_dssp EEEEEEE--TT-----EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-------TT----EEEEEESSS
T ss_pred cccEEEE--CC-----EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-------CC----EEEEEEeeC
Confidence 5588888 43 33333 332 5999999999999999887544223445554 33 255566679
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.+.+||.++ ++.+.++..-... +.++ + +++.|+....++.|.++|..+.+.+.++...
T Consensus 85 ~~v~v~D~~t---------------l~~~~ti~~~~~G-wglt--~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 85 HEGFVYDLAT---------------LTPRARFRYPGEG-WALT--S---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp SEEEEEETTT---------------TEEEEEEECSSCC-CEEE--E---CSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred CEEEEEECCc---------------CcEEEEEeCCCCc-eEEe--e---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 9999999875 4555555432211 3443 5 6676666666889999999999988877632
Q ss_pred Cc----eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 177 ER----CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 177 ~~----~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
.. ..+..+.+ .++.+.+..-.+..|.+.|..+++
T Consensus 144 ~~g~~~~~lNeLe~----~~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 144 AGGRPLDNLNELEW----VNGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp ETTEECCCEEEEEE----ETTEEEEEETTTTEEEEECTTTCB
T ss_pred cCCcccccceeeEE----eCCEEEEEECCCCeEEEEECCCCC
Confidence 11 11222332 245555444457788888888433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00035 Score=73.05 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=95.1
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
..+|.|+ . ..|..+. ++.|+++|+++|+.++++ .....--.++++. .+. .+++.+.++
T Consensus 57 tqGL~~~--~------~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-------g~~----Ly~ltw~~~ 116 (268)
T 3nok_A 57 TQGLVFH--Q------GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-------GER----LYQLTWTEG 116 (268)
T ss_dssp EEEEEEE--T------TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-------SSC----EEEEESSSC
T ss_pred cceEEEE--C------CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-------CCE----EEEEEccCC
Confidence 3477777 3 3333333 588999999999999988 4333222446655 332 666667799
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
.+.+||.++ ++.+.++..-.. =+.++ + |++.|+....++.|.++|..+.+.+.++....
T Consensus 117 ~v~V~D~~T---------------l~~~~ti~~~~e-GwGLt--~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 117 LLFTWSGMP---------------PQRERTTRYSGE-GWGLC--Y---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp EEEEEETTT---------------TEEEEEEECSSC-CCCEE--E---ETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEEECCc---------------CcEEEEEeCCCc-eeEEe--c---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 999999885 455555543221 13444 5 77777777678999999999999888776322
Q ss_pred c--e--eEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 178 R--C--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 178 ~--~--~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
. . .+..+.+ .++.+.+..-..+.|.+-|.++
T Consensus 176 ~g~~v~~lNeLe~----~dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 176 RGQPVELINELEC----ANGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp TTEECCCEEEEEE----ETTEEEEEETTCSEEEEECTTT
T ss_pred CCcccccccccEE----eCCEEEEEECCCCeEEEEeCCC
Confidence 1 1 1222333 2565555444678888888883
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.001 Score=69.55 Aligned_cols=193 Identities=10% Similarity=0.021 Sum_probs=120.4
Q ss_pred eeeeccCCC--CcEEEEEEecccCCCCEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE-
Q 001391 124 LVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS- 198 (1088)
Q Consensus 124 ~~~~l~~h~--~~I~~v~f~p~~~d~~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s- 198 (1088)
.++.+ .|. .....+.|+ ++.+..+.+.+| .|+++|+.+++.+.++..+.....-.+.. ++..|..
T Consensus 33 vv~~~-phd~~~ftqGL~~~----~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-----~g~~ly~l 102 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR----NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-----WKDKIVGL 102 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE----TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-----ETTEEEEE
T ss_pred EEEEe-cCCCCcccceEEEE----CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-----eCCEEEEE
Confidence 44444 343 345778886 456666677766 89999999999998887554322222333 2334444
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
.-.++.+.++|.. +.+.+.++.-.. ....++++++.|+.+..++
T Consensus 103 tw~~~~v~v~D~~---------------------------------t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~ 146 (262)
T 3nol_A 103 TWKNGLGFVWNIR---------------------------------NLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTP 146 (262)
T ss_dssp ESSSSEEEEEETT---------------------------------TCCEEEEEECSS---CCCCEEECSSCEEECCSSS
T ss_pred EeeCCEEEEEECc---------------------------------cCcEEEEEECCC---CceEEecCCCEEEEECCCC
Confidence 4458899999998 566666665322 2233345777776666678
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccC-cceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEccc---------
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEH--------- 346 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~-~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h--------- 346 (1088)
.|.++|..+.+. ...+.. ...+.. ..+..+.+. +.+.+....+..|.+.|. +|+.+..+...
T Consensus 147 ~i~~iDp~T~~v-----~~~I~V-~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~ 220 (262)
T 3nol_A 147 VLRFLDPESLTP-----VRTITV-TAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPL 220 (262)
T ss_dssp EEEEECTTTCSE-----EEEEEC-EETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSC
T ss_pred eEEEEcCCCCeE-----EEEEEe-ccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccc
Confidence 899999988543 222220 111222 234456666 444444446889999999 88888776532
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeC
Q 001391 347 --IGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 347 --~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.......||++|+++.|...|.
T Consensus 221 ~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 221 PSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCcCCceEEEEEcCCCCEEEEECC
Confidence 1224688999999887777664
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0013 Score=76.85 Aligned_cols=284 Identities=11% Similarity=0.032 Sum_probs=166.0
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCc--------------------------------------ceEEEEecccccccCCCc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGI--------------------------------------RLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~--------------------------------------~V~~i~~s~~~~~~~~d~ 84 (1088)
.|+|+||-+.+++++..+.+|... ..|..+.|.. .-.+||
T Consensus 24 ~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t--~g~~DG 101 (595)
T 1fwx_A 24 SGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT--EGKYDG 101 (595)
T ss_dssp TCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE--TTEEEE
T ss_pred CceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC--CCCcCC
Confidence 499999999999999888765420 1122333310 001245
Q ss_pred cceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceee--eccCCCCcEEEEEE-e-cccCCCCEEEEEEc----
Q 001391 85 TRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQ--SLPRLSHWVFDVCF-L-KVCNGNRSLAIGCS---- 155 (1088)
Q Consensus 85 ~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~I~~v~f-~-p~~~d~~~lasgs~---- 155 (1088)
+ .+++... +.+|.+.|+.. ++..+ .++. ...+..+++ . | +++++++++.
T Consensus 102 ~---~lfVnd~~~~rVavIdl~t---------------~~~~~ii~ip~-g~~phg~~~~~~p---~~~~v~~~~~~~~p 159 (595)
T 1fwx_A 102 R---FLFMNDKANTRVARVRCDV---------------MKCDAILEIPN-AKGIHGLRPQKWP---RSNYVFCNGEDETP 159 (595)
T ss_dssp E---EEEEEETTTTEEEEEETTT---------------TEEEEEEECSS-CCSEEEEEECCSS---BCSEEEEEECSCEE
T ss_pred C---EEEEEcCCCCEEEEEECCC---------------ceEeeEEeCCC-CCCCcceeeeecC---CCcEEEEecccccc
Confidence 2 4444433 67899999885 33333 3332 234788888 4 8 9999888852
Q ss_pred --------------CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC---------------CeEE
Q 001391 156 --------------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---------------NEII 206 (1088)
Q Consensus 156 --------------Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---------------g~I~ 206 (1088)
++.+.+.|.++.+...++.-+..... +++ ++++.++++.+.+ ..|.
T Consensus 160 ~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~--~~~---spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 160 LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDN--CDA---DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp SSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCC--EEE---CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred cCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccc--eEE---CCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 45799999999988888764222111 222 6788888887755 3477
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc-eee-eEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVN-LFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIW 283 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~-~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iW 283 (1088)
+.|+...+. ...+|+...-+.+.+.+.... +.. +..+.. .....++.++|||++++.++ .+.+|.++
T Consensus 235 V~~~~~~~~---------~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVi 304 (595)
T 1fwx_A 235 VFNIAEIEK---------AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVL 304 (595)
T ss_dssp EEEHHHHHH---------HHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEE
T ss_pred EeeccceeE---------eccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEE
Confidence 777652211 111121111122444443320 222 333332 23567899999999876655 67899999
Q ss_pred EcCCCccc--C-CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-C----------CceeEEEcccC
Q 001391 284 EVRAEYWK--D-SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-D----------GKQLKMIKEHI 347 (1088)
Q Consensus 284 d~~~~~~~--~-~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~----------~~~~~~~~~h~ 347 (1088)
|+.+.+.. . -.....+. ....-....+.++|+ +...++...|+.|.+|++ . .+.+.++..|-
T Consensus 305 d~~~~~~~~~~~l~~~~~v~--~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 305 DVTRFDAVFYENADPRSAVV--AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp EGGGHHHHHHSCCCGGGGEE--ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred ECcccccccccccCcccceE--EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 99864210 0 00000111 112233567889998 534456778999999998 3 34566666554
Q ss_pred CCCe-----EEEEEcCCCCEEEEEeC
Q 001391 348 GRGI-----WRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 348 ~~~V-----~~l~~~~dg~~l~tg~~ 368 (1088)
. +- ..+.++|||++|++...
T Consensus 383 q-pGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 383 Q-PGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp C-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred c-cccceeccceEeCCCCCEEEEcCC
Confidence 3 11 12245789999888764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0036 Score=64.87 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=122.3
Q ss_pred cceeeeccCCC--CcEEEEEEecccCCCCEEEEEEcC--CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 122 LSLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 122 ~~~~~~l~~h~--~~I~~v~f~p~~~d~~~lasgs~D--g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.+.+..+ .|+ .....+.|++ +.+..+.+.+ ..|+.+|+.+++.+.++..+.....-.+... .+.+..
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~----~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~----~~~ly~ 79 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR----GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW----RDRLIQ 79 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET----TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE----TTEEEE
T ss_pred eEEEEEc-CCCCccccccEEEEC----CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe----CCEEEE
Confidence 3555666 454 4577899974 4555555554 4899999999999988875543222233331 233334
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
..-.++.+.++|.. +.+.+.++.-... =.+++ ++++.|+.+..+
T Consensus 80 ltw~~~~v~v~D~~---------------------------------tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs 123 (243)
T 3mbr_X 80 LTWRNHEGFVYDLA---------------------------------TLTPRARFRYPGE-GWALT--SDDSHLYMSDGT 123 (243)
T ss_dssp EESSSSEEEEEETT---------------------------------TTEEEEEEECSSC-CCEEE--ECSSCEEEECSS
T ss_pred EEeeCCEEEEEECC---------------------------------cCcEEEEEeCCCC-ceEEe--eCCCEEEEECCC
Confidence 44568899999998 6666766663221 13343 567766666678
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccC---cceEEEEECCCEEEE-EeCCCcEEEEcC-CCceeEEEccc------
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---ARVWDCCLTDSFIIT-AGEDCTCRVWGS-DGKQLKMIKEH------ 346 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---~~I~~v~~~~~~l~s-g~~Dg~i~vWd~-~~~~~~~~~~h------ 346 (1088)
+.|.++|..+.+. ...+ ....+. ..+..+.+.+..+.. ...+..|.+.|. +|+.+..+...
T Consensus 124 ~~l~~iDp~t~~~-----~~~I---~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 124 AVIRKLDPDTLQQ-----VGSI---KVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp SEEEEECTTTCCE-----EEEE---ECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred CeEEEEeCCCCeE-----EEEE---EEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 8999999988543 2222 222222 234556666444444 446789999999 88888776522
Q ss_pred ------CCCCeEEEEEcCCCCEEEEEeC
Q 001391 347 ------IGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 347 ------~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.+.-...|+++|+++.|...|.
T Consensus 196 ~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 2234688999998877666664
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0018 Score=67.70 Aligned_cols=191 Identities=7% Similarity=-0.002 Sum_probs=120.6
Q ss_pred ceeeeccCCC--CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 123 SLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 123 ~~~~~l~~h~--~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
+.+..+ .|. .....+.|+ ++.+..+.+.+|.|+++|+.+++.+.++ .+.....-.+.+ . .+.+.+..-
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~---~-g~~Ly~ltw 113 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS---D-GERLYQLTW 113 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE---C-SSCEEEEES
T ss_pred EEEEEE-cCCCccccceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE---e-CCEEEEEEc
Confidence 344555 343 345788886 4566677788889999999999998877 443322222333 1 223334445
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.++.+.++|.. +.+.+.++.-- ..=.+++ ++++.|+.+..++.|
T Consensus 114 ~~~~v~V~D~~---------------------------------Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l 157 (268)
T 3nok_A 114 TEGLLFTWSGM---------------------------------PPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTML 157 (268)
T ss_dssp SSCEEEEEETT---------------------------------TTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEE
T ss_pred cCCEEEEEECC---------------------------------cCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEE
Confidence 68899999998 66666666532 2213333 577888777778999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCc---ceEEEEECCCEEE-EEeCCCcEEEEcC-CCceeEEEccc---------
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLTDSFII-TAGEDCTCRVWGS-DGKQLKMIKEH--------- 346 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~---~I~~v~~~~~~l~-sg~~Dg~i~vWd~-~~~~~~~~~~h--------- 346 (1088)
.++|..+.+. ...+ ....+.. .+..+.|.+..|. ....+..|.+.|. +|+.+..+...
T Consensus 158 ~~iDp~T~~v-----~~~I---~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~ 229 (268)
T 3nok_A 158 TFHEPDGFAL-----VGAV---QVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ 229 (268)
T ss_dssp EEECTTTCCE-----EEEE---ECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred EEEcCCCCeE-----EEEE---EeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence 9999888543 2222 2222222 3456667644444 4446889999999 88888776432
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEe
Q 001391 347 ---IGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 347 ---~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
...-...||++|+++.|...|
T Consensus 230 ~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 230 VTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccCcCCceEEEEEcCCCCEEEEeC
Confidence 122468899999876555554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0058 Score=73.10 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=33.2
Q ss_pred EECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 315 CLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 315 ~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
...+.+++.++.|+.++.||. +|+.+.+++...+-...-+.+..+|+
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 334788888999999999999 89999888655431112244555665
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0025 Score=77.86 Aligned_cols=51 Identities=6% Similarity=-0.010 Sum_probs=38.8
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|.|..||. +|+.+.....+. +.+...+...+.+++.++.||.++.||.++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 488999998 888887776443 344444555678899999999999999853
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0042 Score=74.42 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE--EEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEE
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~--~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~ 353 (1088)
++.|.-||+.+++. +- .... ...++ .+...+.+++.|+.||.++.||. +|+.+.+++...+-...-
T Consensus 465 ~G~l~A~D~~tG~~--------~W--~~~~-~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P 533 (582)
T 1flg_A 465 VGSLRAMDPVSGKV--------VW--EHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP 533 (582)
T ss_dssp SEEEEEECTTTCCE--------EE--EEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cceEEEEECCCCCE--------EE--EecC-CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCc
Confidence 57788888887643 11 1111 11111 12334788889999999999999 899999887654411112
Q ss_pred EEEcCCCC
Q 001391 354 CLYDSLSS 361 (1088)
Q Consensus 354 l~~~~dg~ 361 (1088)
+.+..+|+
T Consensus 534 ~~y~~~G~ 541 (582)
T 1flg_A 534 ITWEQDGE 541 (582)
T ss_dssp EEEEETTE
T ss_pred eEEEECCE
Confidence 55666776
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.015 Score=69.59 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+|.+..||. +|+.+.++.... ++.+..+...+.+++.++.||.+..+|..+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 3578999998 788887765432 233333334456788899999999999853
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0067 Score=66.73 Aligned_cols=112 Identities=11% Similarity=-0.036 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC--------
Q 001391 258 SIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-------- 326 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-------- 326 (1088)
....|+++|++++|..+ +..+.|..+++..... ...+.+. . ... ...+++. +.+.++...
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---~~~~~~~--~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---GTAEVLV--K---IPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---TCEEEEE--E---CSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---CccceEE--e---CCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 45679999999865544 5668899999875321 0011111 1 122 6677887 555555444
Q ss_pred --CCcEEEEcCCCceeEEEcccCC---CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 --DCTCRVWGSDGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 --Dg~i~vWd~~~~~~~~~~~h~~---~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+.|..++.+++.+..+....+ ..+.++++ .++++.++....+.|..+++..
T Consensus 257 ~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp CEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678888888888877765432 24666766 4666666666788899998853
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0016 Score=79.63 Aligned_cols=116 Identities=17% Similarity=0.114 Sum_probs=71.6
Q ss_pred EEEEeccC-CCCCCCCEEEEEe-CC-----------eEEEEECCCCeeE--EEEeeeCCcceEEEEecccccccCCCccc
Q 001391 22 ALCFVHLP-SHLSSLPFLLAGS-GS-----------QVLLYDLEAGTLI--RPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 22 ~v~fs~~p-d~~~~~~~laag~-d~-----------~I~vwd~~tg~~~--~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
+.++. | + +++++.|. +. .+.+||..+++.. ..+........+++++. .++
T Consensus 190 ~~av~--~~~----g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-------~~g-- 254 (656)
T 1k3i_A 190 AAAIE--PTS----GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-------GNG-- 254 (656)
T ss_dssp EEEEE--TTT----TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-------TTS--
T ss_pred eEEEE--ecC----CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC-------CCC--
Confidence 55666 6 5 77777765 21 6899999887632 23322222223456666 666
Q ss_pred eeeEEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cC-----Cc
Q 001391 87 VTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SD-----NS 158 (1088)
Q Consensus 87 ~~~~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~D-----g~ 158 (1088)
.+++.+| +..+.+||..... ...+..+... .+-.++++.+ ++++++.|| .+ ..
T Consensus 255 --~lyv~GG~~~~~v~~yd~~t~~-------------W~~~~~~~~~-R~~~s~~~~~---dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 255 --QIVVTGGNDAKKTSLYDSSSDS-------------WIPGPDMQVA-RGYQSSATMS---DGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp --CEEEECSSSTTCEEEEEGGGTE-------------EEECCCCSSC-CSSCEEEECT---TSCEEEECCCCCSSSCCCC
T ss_pred --CEEEeCCCCCCceEEecCcCCc-------------eeECCCCCcc-ccccceEEec---CCeEEEEeCcccCCccccc
Confidence 6777766 4689999987532 3333333221 2224566677 889988888 34 57
Q ss_pred EEEEEcCCCceEE
Q 001391 159 IRVWDISNSSIIL 171 (1088)
Q Consensus 159 V~iWd~~~~~~~~ 171 (1088)
+.+||..+.+...
T Consensus 316 ~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 316 GEVYSPSSKTWTS 328 (656)
T ss_dssp EEEEETTTTEEEE
T ss_pred ceEeCCCCCccee
Confidence 9999998776443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.036 Score=60.34 Aligned_cols=247 Identities=9% Similarity=-0.003 Sum_probs=131.4
Q ss_pred CCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC
Q 001391 53 AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL 131 (1088)
Q Consensus 53 tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h 131 (1088)
..+.+..|... ....+++++ +++ .++++. .++.|..|+.... ...... .
T Consensus 21 ~~~~~~~~p~~--~~pegia~~-------~~g----~lyv~d~~~~~I~~~d~~g~--------------~~~~~~---~ 70 (306)
T 2p4o_A 21 PAKIITSFPVN--TFLENLASA-------PDG----TIFVTNHEVGEIVSITPDGN--------------QQIHAT---V 70 (306)
T ss_dssp CEEEEEEECTT--CCEEEEEEC-------TTS----CEEEEETTTTEEEEECTTCC--------------EEEEEE---C
T ss_pred CceEeEeCCCC--CCcceEEEC-------CCC----CEEEEeCCCCeEEEECCCCc--------------eEEEEe---C
Confidence 34555555432 357889998 776 455554 5788888875521 111111 1
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEE
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd 209 (1088)
......+++.+ +++++++....+ .|..+|..+++.......+.......++. .+++..+++....+.|.++|
T Consensus 71 ~~~p~gia~~~---dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~---~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 71 EGKVSGLAFTS---NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP---LSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp SSEEEEEEECT---TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE---SSSSEEEEEETTTTEEEEEE
T ss_pred CCCceeEEEcC---CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccc---cCCCcEEEEECCCCeEEEEe
Confidence 24688999999 888655543322 46667777776543332222212222332 23344444444578888888
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCC-
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRA- 287 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~- 287 (1088)
..+.+ .+++......... ...+.-.....+ +|++++| ++-+..+.|..+++..
T Consensus 145 ~~~~~----------------------~~v~~~~~~~~~~-~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~ 199 (306)
T 2p4o_A 145 VVQPS----------------------GSIWLEHPMLARS-NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST 199 (306)
T ss_dssp TTTTE----------------------EEEEEECGGGSCS-STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT
T ss_pred CCCCc----------------------EeEEEECCccccc-cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC
Confidence 65110 0000000000000 000111234555 7888765 4555678899999875
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEE--EcccCCCCeEEEEEc---CCC
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM--IKEHIGRGIWRCLYD---SLS 360 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~--~~~h~~~~V~~l~~~---~dg 360 (1088)
+.. ...+.+. . ......+++. +.++++....+.|.+++.+|+.... +..... ..++++|. |++
T Consensus 200 g~~---~~~~~~~--~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~-~p~~~a~~g~~~d~ 269 (306)
T 2p4o_A 200 DKP---GEPEIFV--E----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI-GSTAVAFGQTEGDC 269 (306)
T ss_dssp SCB---CCCEEEE--E----SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCT-TEEEEEECCSTTTT
T ss_pred CCC---CccEEEe--c----cCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccC-CceEEEEecccCCC
Confidence 211 0011111 1 1234456676 5666666667899999988766432 332222 58899998 887
Q ss_pred CEEEEEeCCC
Q 001391 361 SLLVTAGFDS 370 (1088)
Q Consensus 361 ~~l~tg~~Dg 370 (1088)
+.|+.+...+
T Consensus 270 ~~LyVt~~~~ 279 (306)
T 2p4o_A 270 TAIYVVTNGG 279 (306)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEECCCC
Confidence 7776665543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.042 Score=57.58 Aligned_cols=210 Identities=8% Similarity=0.006 Sum_probs=128.6
Q ss_pred eeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
+.+.+-.+.+..+++.| +++.| ++...++.|...|.. ++.+..+.-....-.-.+++ .+++.++++.-.++.
T Consensus 20 ~~l~g~~~~lSGla~~~---~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~---~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSA---QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEY---IGDNQFVISDERDYA 92 (255)
T ss_dssp EECTTCCSCEEEEEEET---TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEE---CSTTEEEEEETTTTE
T ss_pred eECCCcccCcceeEEeC---CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEE---eCCCEEEEEECCCCc
Confidence 45667777899999999 76654 456678889999987 88877764322122223343 355666666666788
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE------eCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL------VGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
+.++++.... .+ ..+... ...+....+|+|+|.++.|.++.+..
T Consensus 93 l~~~~v~~~~---------------------~i---------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~ 142 (255)
T 3qqz_A 93 IYVISLTPNS---------------------EV---------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN 142 (255)
T ss_dssp EEEEEECTTC---------------------CE---------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS
T ss_pred EEEEEcCCCC---------------------ee---------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC
Confidence 9998886111 00 011111 12345578999999998887777665
Q ss_pred cEEEEEcCCCcccCCCCceeeec--eeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccCC-----
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG----- 348 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~----- 348 (1088)
...+|.+... . .......+.. .....+...+.+++++ +.+++...+...+.++|..|+.+..+.-..+
T Consensus 143 p~~i~~~~g~-~-~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 143 PIEVYKVNGL-L-SSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLS 220 (255)
T ss_dssp SEEEEEEEST-T-CSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCS
T ss_pred CceEEEEccc-c-cCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcc
Confidence 6666666521 0 0000111110 0001123356788887 5677888888999999999887766543321
Q ss_pred ---CCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 001391 349 ---RGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1088)
Q Consensus 349 ---~~V~~l~~~~dg~~l~tg~~Dg~I~iw 375 (1088)
..--.|+|.++|++.++ +.-+.+..+
T Consensus 221 ~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 221 HNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp SCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred cccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 24679999999985555 555544443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.12 Score=56.61 Aligned_cols=274 Identities=9% Similarity=-0.000 Sum_probs=142.8
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe---eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~---~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
..+.+|.|. ++ +..+++|..+.|. .....|+ .+..-.......+.+|.|. ++ ..++++
T Consensus 36 ~~~~~v~~~--~~----~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-------~~-----~~~~~g 96 (327)
T 2xbg_A 36 ATILDMSFI--DR----HHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQ-------GN-----EGWIVG 96 (327)
T ss_dssp SCEEEEEES--SS----SCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEE-------TT-----EEEEEE
T ss_pred CcEEEEEEC--CC----CcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEec-------CC-----eEEEEE
Confidence 468899998 65 6778888777653 3333342 2211001123357888887 53 455555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
..+. |+.-.... ...+.+.....+...+..+.+.+ ++..++.+ .++.|.. ....++.-..+.
T Consensus 97 ~~g~--i~~S~DgG-----------~tW~~~~~~~~~~~~~~~i~~~~---~~~~~~~~-~~g~v~~-S~DgG~tW~~~~ 158 (327)
T 2xbg_A 97 EPPI--MLHTTDGG-----------QSWSQIPLDPKLPGSPRLIKALG---NGSAEMIT-NVGAIYR-TKDSGKNWQALV 158 (327)
T ss_dssp ETTE--EEEESSTT-----------SSCEECCCCTTCSSCEEEEEEEE---TTEEEEEE-TTCCEEE-ESSTTSSEEEEE
T ss_pred CCCe--EEEECCCC-----------CCceECccccCCCCCeEEEEEEC---CCCEEEEe-CCccEEE-EcCCCCCCEEee
Confidence 4553 33332211 01233222223345578888877 77666655 4554322 223344433333
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEE-EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEII-VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~-vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.+....++.+.+ .+++.+++.+. .|.+. -+|-. + ..-..+ -.
T Consensus 159 ~~~~~~~~~~~~---~~~~~~~~~g~-~G~~~~S~d~g-----G--------------------------~tW~~~--~~ 201 (327)
T 2xbg_A 159 QEAIGVMRNLNR---SPSGEYVAVSS-RGSFYSTWEPG-----Q--------------------------TAWEPH--NR 201 (327)
T ss_dssp CSCCCCEEEEEE---CTTSCEEEEET-TSSEEEEECTT-----C--------------------------SSCEEE--EC
T ss_pred cCCCcceEEEEE---cCCCcEEEEEC-CCcEEEEeCCC-----C--------------------------CceeEC--CC
Confidence 333334566655 35566666654 44433 33321 0 011111 12
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee-eccCcceEEEEEC-CCEEEEEeCCCcEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLT-DSFIITAGEDCTCR 331 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~~h~~~I~~v~~~-~~~l~sg~~Dg~i~ 331 (1088)
.....+..+.+.+++..+ .++.+|.+++++...++. -+.+. .- ..+...+.++.+. +..++.++.+|.+.
T Consensus 202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-----W~~~~--~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-----WGELL--SPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-----ECCCB--CTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-----eEecc--CCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 345678899999988755 455678877765332211 01111 00 1123457888887 44555556678774
Q ss_pred EEcC-CCceeEEEcc---cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 332 VWGS-DGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+.. .|+.-..+.. ... .+.++.|.+++ .++.++.+|.|.-++
T Consensus 274 -~S~DgG~tW~~~~~~~~~~~-~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 274 -CSQDGGQTWQQDVDVKKVPS-NFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp -EESSTTSSCEECGGGTTSSS-CCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred -EeCCCCcccEEcCccCCCCC-CeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 344 4555554442 223 47888887554 467778899766554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.19 Score=59.95 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|.|..||+ +|+.+.+..... +++.-.+...+.+++.|+.||.++.+|.++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence 688999998 788887765432 233322233466788899999999999853
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.23 Score=52.50 Aligned_cols=194 Identities=8% Similarity=-0.079 Sum_probs=112.0
Q ss_pred CcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-CcEEEEEecCCeEEEEEe
Q 001391 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~ 210 (1088)
..+..++++| +++.|+.+ ..++.|..++.........+... ......+++ +++ +.+.++....+.|.++++
T Consensus 36 ~~~~gi~~d~---~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~---d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 36 KVIIGLAFDC---VDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEGIAL---DHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEEET---TTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEEEEE---ETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEec---CCCEEEEEECCCCEEEEEecCCCCcEEEEECC-CCCccEEEE---EecCCeEEEEECCCCEEEEEEc
Confidence 4578999998 76655554 45789999999766543333221 112334444 343 445555556778888887
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcCC
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRA 287 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---Dg~v~iWd~~~ 287 (1088)
. .................++++|++..|..+.. .+.|..+++..
T Consensus 109 ~---------------------------------g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 109 D---------------------------------GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp T---------------------------------SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred C---------------------------------CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 6 11111111222246789999997666555443 36788888764
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
... +.+ ..........++++ +..| ++-...+.|.+++.++.....+..... ....+++. ++.+++
T Consensus 156 ~~~------~~~----~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~-~P~gi~~d-~~~lyv 223 (267)
T 1npe_A 156 TNR------RIL----AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYY 223 (267)
T ss_dssp CCC------EEE----ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEE
T ss_pred CCc------EEE----EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC-CceEEEEe-CCEEEE
Confidence 321 111 11222356788886 3454 555566899999996654443322222 34677765 344444
Q ss_pred EEeCCCCEEEEEcC
Q 001391 365 TAGFDSAIKVHQFQ 378 (1088)
Q Consensus 365 tg~~Dg~I~iwd~~ 378 (1088)
+....+.|..++..
T Consensus 224 a~~~~~~v~~~d~~ 237 (267)
T 1npe_A 224 TDWKTNSVIAMDLA 237 (267)
T ss_dssp EETTTTEEEEEETT
T ss_pred EECCCCeEEEEeCC
Confidence 44456888888875
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.11 Score=62.04 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+|.+..||+ +|+.+.+..... +.++-.+...+.+++.++.||.++.+|.++
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCC
Confidence 4578999998 788877664221 233222333566788899999999999853
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.35 Score=52.65 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=129.1
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+.+....|+..|+.+.+....+... ....+++|. ++++ .+..+- .++.|..+++..... +
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~~~--~~p~g~~~d-------~~~~---~ly~~D~~~~~I~~~~~~g~~~-~--- 65 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNL--RNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG-V--- 65 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEECSC--SSEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC----------
T ss_pred CEEEEECCCeEEEEECCCcceEehhcCC--CceEEEEEE-------eCCC---EEEEEECCCCcEEEEECCCCCC-C---
Confidence 3567777778999999987765555443 358999998 5431 344443 368898888764110 0
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-C
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~ 192 (1088)
......+...-.....+++.+ .+..|+ +-...+.|.+.++........+... ......+++ +| +
T Consensus 66 -------~~~~~~~~~~~~~p~glavd~---~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~iav---dp~~ 131 (316)
T 1ijq_A 66 -------SSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVV---DPVH 131 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEE---ETTT
T ss_pred -------cccEEEEeCCCCCcCEEEEee---cCCeEEEEECCCCEEEEEeCCCCceEEEEECC-CCCcceEEe---CCCC
Confidence 001111122223467899987 555454 4456788999998754332222211 112233443 33 3
Q ss_pred CcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCE
Q 001391 193 ALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 193 ~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~ 270 (1088)
+.++.+.... +.|...++. +.....+ ...-....+|+++|+++.
T Consensus 132 g~ly~~d~~~~~~I~~~~~d----------------------------------G~~~~~~~~~~~~~P~gla~d~~~~~ 177 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLN----------------------------------GVDIYSLVTENIQWPNGITLDLLSGR 177 (316)
T ss_dssp TEEEEEECSSSCEEEEEETT----------------------------------SCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred CEEEEEccCCCCeEEEEcCC----------------------------------CCCeEEEEECCCCCceEEEEeccCCE
Confidence 3333443222 567766665 1112222 223456889999998776
Q ss_pred EEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 271 LVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 271 l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
|..+ +..+.|..+|+..... +.+. ...+.......+++. +.++++-...+.|..++. +|+.+..+
T Consensus 178 lY~~D~~~~~I~~~d~dg~~~------~~~~--~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 178 LYWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEETTTTEEEEEETTSCSC------EEEE--ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEECCCCeEEEEecCCCce------EEEe--ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 6554 4567899999875321 2221 111112334566665 445555556678888876 66655544
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0073 Score=73.80 Aligned_cols=95 Identities=9% Similarity=-0.007 Sum_probs=56.0
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEecc
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
.+.+||..+.. .+.+..+. .+.....++++.+ ++++++.||. ++.+.+||..+.+....-..
T Consensus 220 ~~~~yd~~t~~-------------w~~~~~~~~~~~~~~~~~~~~~---~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~ 283 (656)
T 1k3i_A 220 LTSSWDPSTGI-------------VSDRTVTVTKHDMFCPGISMDG---NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM 283 (656)
T ss_dssp EEEEECTTTCC-------------BCCCEEEECSCCCSSCEEEECT---TSCEEEECSSSTTCEEEEEGGGTEEEECCCC
T ss_pred EEEEEeCCCCc-------------EEeCcccCCCCCCccccccCCC---CCCEEEeCCCCCCceEEecCcCCceeECCCC
Confidence 56777776533 33333332 2334445677888 9999999884 56899999987755433222
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEe-cC-----CeEEEEEec
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGT-IY-----NEIIVWKVD 211 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~-~d-----g~I~vwd~~ 211 (1088)
+......++.. -+++.+++.|+ .+ ..+.+||..
T Consensus 284 ~~~R~~~s~~~---~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 284 QVARGYQSSAT---MSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCCSSCEEEE---CTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CccccccceEE---ecCCeEEEEeCcccCCcccccceEeCCC
Confidence 22111112222 24677888877 34 568888887
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.059 Score=59.01 Aligned_cols=238 Identities=12% Similarity=0.040 Sum_probs=127.4
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeC-------------------CcceEEEEecccccc
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-------------------GIRLHGISCNFINCT 79 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~-------------------~~~V~~i~~s~~~~~ 79 (1088)
..++++. ++ ++++.++. ++.|..||..+++.. .+.... ...+.++++.
T Consensus 21 p~~i~~d--~~----g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~----- 88 (322)
T 2fp8_A 21 PNSFTFD--ST----NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN----- 88 (322)
T ss_dssp CCCEECC--TT----CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE-----
T ss_pred ceEEEEc--CC----CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEc-----
Confidence 3467888 77 77666666 689999998776532 332100 1247889988
Q ss_pred cCC-CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceee-eccCC-CCcEEEEEEecccCCCCEEEEEEc-
Q 001391 80 EGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-SLPRL-SHWVFDVCFLKVCNGNRSLAIGCS- 155 (1088)
Q Consensus 80 ~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~-~l~~h-~~~I~~v~f~p~~~d~~~lasgs~- 155 (1088)
+ ++ .++++...+.+..++..... .+.+. ...+. ......+++.+ .+|.+.++-..
T Consensus 89 --~~~g----~l~v~d~~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~~p~~i~~d~--~~G~l~v~d~~~ 147 (322)
T 2fp8_A 89 --LQNN----QLYIVDCYYHLSVVGSEGGH-------------ATQLATSVDGVPFKWLYAVTVDQ--RTGIVYFTDVST 147 (322)
T ss_dssp --TTTT----EEEEEETTTEEEEECTTCEE-------------CEEEESEETTEECSCEEEEEECT--TTCCEEEEESCS
T ss_pred --CCCC----cEEEEECCCCEEEEeCCCCE-------------EEEecccCCCCcccccceEEEec--CCCEEEEECCcc
Confidence 5 55 56666555557777654221 11111 11111 13467788865 13454443221
Q ss_pred ----------------CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCeEEEEEeccCccccC
Q 001391 156 ----------------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 156 ----------------Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~ 218 (1088)
++.|..||..+++.......-. ....+++ ++++..|+ +-+..+.|.++++..... +
T Consensus 148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--~p~gia~---~~dg~~lyv~d~~~~~I~~~~~~~~~~-~- 220 (322)
T 2fp8_A 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH--VPGGAEV---SADSSFVLVAEFLSHQIVKYWLEGPKK-G- 220 (322)
T ss_dssp SCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES--CCCEEEE---CTTSSEEEEEEGGGTEEEEEESSSTTT-T-
T ss_pred cccccccceehcccCCCceEEEEeCCCCEEEEeccCCc--cCcceEE---CCCCCEEEEEeCCCCeEEEEECCCCcC-C-
Confidence 3668888887665432211100 0112333 57776554 445678999999872100 0
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC----------CCcEEEEEcCCC
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD----------DRSARIWEVRAE 288 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~----------Dg~v~iWd~~~~ 288 (1088)
..+.+.. ..+ ...+++.++|.+.++... .+.|..+|...
T Consensus 221 --------------------------~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G- 269 (322)
T 2fp8_A 221 --------------------------TAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG- 269 (322)
T ss_dssp --------------------------CEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-
T ss_pred --------------------------ccceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-
Confidence 1111222 123 788999999987777654 35577776542
Q ss_pred cccCCCCceeeeceeee-cc-CcceEEEEECC-CEEEEEeCCCcEEEEcCC
Q 001391 289 YWKDSDSIEEVGSSVLY-GH-NARVWDCCLTD-SFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~-~h-~~~I~~v~~~~-~~l~sg~~Dg~i~vWd~~ 336 (1088)
+.+..+... +. -..+.++++.+ .++++...++.|.++++.
T Consensus 270 --------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 270 --------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp --------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred --------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 122101111 11 23455666664 444454567788888874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.25 Score=51.61 Aligned_cols=202 Identities=11% Similarity=0.045 Sum_probs=119.7
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF- 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~- 94 (1088)
..+.++++. |+ +..|.+.. ++.|...|.. |+.++.+.........+|++. +++ .++++.
T Consensus 27 ~~lSGla~~--~~----~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-------~~g----~~~vs~E 88 (255)
T 3qqz_A 27 NNISSLTWS--AQ----SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-------GDN----QFVISDE 88 (255)
T ss_dssp SCEEEEEEE--TT----TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-------STT----EEEEEET
T ss_pred cCcceeEEe--CC----CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-------CCC----EEEEEEC
Confidence 469999999 97 55555544 4899999988 898888864322358899998 665 554554
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceee-ec--cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC---Cc
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-SL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SS 168 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~-~l--~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~---~~ 168 (1088)
+++.+.++++...... ....... .+ .......-.+++.| .++.|.++.......+|.+.. ..
T Consensus 89 ~~~~l~~~~v~~~~~i---------~~~~~~~~~~~~~~~N~g~EGLA~d~---~~~~L~va~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEV---------KILKKIKIPLQESPTNCGFEGLAYSR---QDHTFWFFKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp TTTEEEEEEECTTCCE---------EEEEEEECCCSSCCCSSCCEEEEEET---TTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred CCCcEEEEEcCCCCee---------eeeeeeccccccccccCCcceEEEeC---CCCEEEEEECcCCceEEEEcccccCC
Confidence 4788999988753300 0001111 11 12345578999999 887777776655556666541 11
Q ss_pred eEEEecc------CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 169 IILEVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 169 ~~~~~~~------~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
.+..+.. ....-..++++. ...+.+++.....+.|.++|...
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~d--p~tg~lliLS~~s~~L~~~d~~g------------------------------ 204 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFN--QQKNTLLVLSHESRALQEVTLVG------------------------------ 204 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEE--TTTTEEEEEETTTTEEEEECTTC------------------------------
T ss_pred ceeeecchhhccccccCCceeEEEc--CCCCeEEEEECCCCeEEEEcCCC------------------------------
Confidence 1111111 011112345554 34466777777888888888760
Q ss_pred ccceeeeEEEe-CC------CCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 243 QHTAVNLFRLV-GH------EGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 243 ~~~~~~~~~~~-gh------~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
.......+. +. -..--+|+|.++|...++ ++-..++.+.
T Consensus 205 --~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 205 --EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp --CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred --CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 111122222 11 136789999999985555 6766554443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.017 Score=67.53 Aligned_cols=199 Identities=8% Similarity=-0.014 Sum_probs=118.8
Q ss_pred CCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE------------------
Q 001391 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF------------------ 94 (1088)
Q Consensus 35 ~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~------------------ 94 (1088)
+++|.... ++.|.+.|+.+.++...+....+...+++++..- |+++ .+++..
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~-----p~~~---~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKW-----PRSN---YVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCS-----SBCS---EEEEEECSCEESSCSSSSTTCGGG
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeec-----CCCc---EEEEecccccccCCCCcccccccc
Confidence 78888876 4889999999999998777666667999998411 4552 444442
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-----------------
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN----------------- 157 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg----------------- 157 (1088)
.++.+.++|.++ .+....+.-- +.-..++++| +|+++++.+.+.
T Consensus 173 ~~~~vtvID~~t---------------~~v~~qI~Vg-g~pd~~~~sp---dGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 173 YVNVFTAVDADK---------------WEVAWQVLVS-GNLDNCDADY---EGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp EEEEEEEEETTT---------------TEEEEEEEES-SCCCCEEECS---SSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cCceEEEEECCC---------------CeEEEEEEeC-CCccceEECC---CCCEEEEEecCcccCcchhhccccccceE
Confidence 135778888764 2233332210 1224466777 777777766432
Q ss_pred ---------------------cEEEEEcCC--Cce-EEEeccCCceeEEEEeeecCCCCCcEEEEE-ecCCeEEEEEecc
Q 001391 158 ---------------------SIRVWDISN--SSI-ILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDW 212 (1088)
Q Consensus 158 ---------------------~V~iWd~~~--~~~-~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~I~vwd~~~ 212 (1088)
.|.+.|..+ ++. +..+..+... ..+.+ +|||.++++. ..+.+|.++|+.+
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P--hGv~~---sPDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP--HGCNM---APDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC--CCEEE---CTTSSEEEEECTTSSBEEEEEGGG
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc--eEEEE---cCCCCEEEEeCCCCCeEEEEECcc
Confidence 366777766 433 3444322111 11222 6899876654 4688999999983
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
.+... ++. + ........... -......++|+|+|...++.-.|++|..||+..
T Consensus 309 ~~~~~----------~~~------l-----~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 309 FDAVF----------YEN------A-----DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHH----------HSC------C-----CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccccc----------ccc------c-----CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 21000 000 0 00111222222 224578899999994456677799999999976
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.56 Score=51.29 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=100.4
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEE-Ec
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRV-WG 334 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~v-Wd 334 (1088)
+.+..+.+.+++..++.+ .++.| |...++.. .-+. ...++...+..+.+. +..++..+.+|.+.. +|
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~----tW~~----~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK----NWQA----LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS----SEEE----EECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred CCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC----CCEE----eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 456777777766655554 45544 33322110 0111 223445578888887 334444445555443 44
Q ss_pred CCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEe-eeCCCcccee
Q 001391 335 SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI-KIPNFSEQIR 413 (1088)
Q Consensus 335 ~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 413 (1088)
-.++.-..+.......+..+++.+++.++ .++.+|.+.+.+.++ ...+.. ..+..
T Consensus 191 ~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~------------------G~tW~~~~~~~~----- 246 (327)
T 2xbg_A 191 PGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN------------------SENWGELLSPLR----- 246 (327)
T ss_dssp TTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE------------------EEEECCCBCTTS-----
T ss_pred CCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCC------------------CCeeEeccCCcc-----
Confidence 33443333322222358899999988755 455678776654221 111110 00100
Q ss_pred eccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCCCCCeEEEecC
Q 001391 414 LTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~~~~~la~g~~ 492 (1088)
.....+..+++.+++.+++.+.+|.++ ........|..+.... ....+..+.+.. +..+++++.
T Consensus 247 ---~~~~~~~~v~~~~~~~~~~~g~~g~i~---~S~DgG~tW~~~~~~~~~~~~~~~v~~~~---------~~~~~~~G~ 311 (327)
T 2xbg_A 247 ---RNSVGFLDLAYRTPNEVWLAGGAGALL---CSQDGGQTWQQDVDVKKVPSNFYKILFFS---------PDQGFILGQ 311 (327)
T ss_dssp ---SCCSCEEEEEESSSSCEEEEESTTCEE---EESSTTSSCEECGGGTTSSSCCCEEEEEE---------TTEEEEECS
T ss_pred ---cCCcceEEEEecCCCEEEEEeCCCeEE---EeCCCCcccEEcCccCCCCCCeEEEEEEC---------CCceEEEcC
Confidence 011247788888888888888888876 3334345686654321 122344444422 245666667
Q ss_pred CCCEEEE
Q 001391 493 KGNMTIV 499 (1088)
Q Consensus 493 dg~I~iw 499 (1088)
+|.|.-+
T Consensus 312 ~G~i~~~ 318 (327)
T 2xbg_A 312 KGILLRY 318 (327)
T ss_dssp TTEEEEE
T ss_pred CceEEEE
Confidence 8866554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.57 Score=50.57 Aligned_cols=208 Identities=9% Similarity=-0.048 Sum_probs=112.4
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
.+.+..+... .....+++++ +++++++-..++.|..||.... ....+..+. ....+++ .+++.++++...
T Consensus 22 ~~~~~~~p~~-~~pegia~~~---~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~--~p~gia~---~~dG~l~vad~~ 91 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAP---DGTIFVTNHEVGEIVSITPDGN-QQIHATVEG--KVSGLAF---TSNGDLVATGWN 91 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECT---TSCEEEEETTTTEEEEECTTCC-EEEEEECSS--EEEEEEE---CTTSCEEEEEEC
T ss_pred ceEeEeCCCC-CCcceEEECC---CCCEEEEeCCCCeEEEECCCCc-eEEEEeCCC--CceeEEE---cCCCcEEEEecc
Confidence 3445555432 5688999999 8887776667889999998654 333332222 2344544 466776555433
Q ss_pred CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 202 dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
.+ .|..++..+++ ...+..+ ........++..+++..+++-..++.
T Consensus 92 ~~~~~v~~~d~~~g~-------------------------------~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~ 139 (306)
T 2p4o_A 92 ADSIPVVSLVKSDGT-------------------------------VETLLTL-PDAIFLNGITPLSDTQYLTADSYRGA 139 (306)
T ss_dssp TTSCEEEEEECTTSC-------------------------------EEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTE
T ss_pred CCcceEEEEcCCCCe-------------------------------EEEEEeC-CCccccCcccccCCCcEEEEECCCCe
Confidence 32 35555654111 1111111 11223345555555555555556788
Q ss_pred EEEEEcCCCcccCCCCceee--ece----eeeccCcceEEEEECCC-EEEEEeCCCcEEEEcCC--Cce--eEEEcccCC
Q 001391 280 ARIWEVRAEYWKDSDSIEEV--GSS----VLYGHNARVWDCCLTDS-FIITAGEDCTCRVWGSD--GKQ--LKMIKEHIG 348 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i--~~~----~~~~h~~~I~~v~~~~~-~l~sg~~Dg~i~vWd~~--~~~--~~~~~~h~~ 348 (1088)
|..+|...+.. +.. ... ...+.-.....+...+. ++++-...+.|.+++++ ++. ...+... .
T Consensus 140 i~~~d~~~~~~------~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~ 212 (306)
T 2p4o_A 140 IWLIDVVQPSG------SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T 212 (306)
T ss_dssp EEEEETTTTEE------EEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-C
T ss_pred EEEEeCCCCcE------eEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-C
Confidence 88888764311 000 000 00011112334434454 44555567889999984 321 1222111 1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
....++++++|++.++....+.|.+++..+
T Consensus 213 -~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 213 -NIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp -CCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred -CCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 245788999998777777778899888753
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.52 Score=52.08 Aligned_cols=231 Identities=10% Similarity=-0.056 Sum_probs=126.6
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+.+....|+..++........+... ..+.+++|. +..+ .+..+- ..+.|..+++....
T Consensus 45 ~~ll~~~~~~I~~i~~~g~~~~~~~~~~--~~~~~l~~d-------~~~~---~ly~~D~~~~~I~r~~~~g~~------ 106 (349)
T 3v64_C 45 PVLLFANRIDIRQVLPHRSEYTLLLNNL--ENAIALDFH-------HRRE---LVFWSDVTLDRILRANLNGSN------ 106 (349)
T ss_dssp CEEEEECBSCEEEECTTSCCEEEEECSC--SCEEEEEEE-------TTTT---EEEEEETTTTEEEEEETTSCS------
T ss_pred ceeEeecccceEEEeCCCCeeEEeecCC--CceEEEEEe-------cccc---EEEEEeccCCceEEEecCCCC------
Confidence 5677677677888898765544333332 258999998 4331 344443 46888888876422
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-C
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~ 192 (1088)
.+.+ +.........+++.+ .+..| ++-...+.|.+.++........+... ......+++ +| +
T Consensus 107 -------~~~~--~~~~~~~p~glavd~---~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~-l~~P~~iav---dp~~ 170 (349)
T 3v64_C 107 -------VEEV--VSTGLESPGGLAVDW---VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAIAL---HPME 170 (349)
T ss_dssp -------CEEE--ECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECTT-CSCEEEEEE---ETTT
T ss_pred -------ceEE--EeCCCCCccEEEEec---CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC-CCCcceEEE---ecCc
Confidence 1111 111223457889987 55544 44455678999998755433222211 111233444 23 3
Q ss_pred CcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCE
Q 001391 193 ALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 193 ~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~ 270 (1088)
+.+..+-... +.|...++. +.....+ ...-....+|+++|+++.
T Consensus 171 g~ly~td~~~~~~I~r~~~d----------------------------------G~~~~~~~~~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 171 GTIYWTDWGNTPRIEASSMD----------------------------------GSGRRIIADTHLFWPNGLTIDYAGRR 216 (349)
T ss_dssp TEEEEEECSSSCEEEEEETT----------------------------------SCSCEESCCSSCSCEEEEEEETTTTE
T ss_pred CeEEEeccCCCCEEEEEeCC----------------------------------CCCcEEEEECCCCCcceEEEeCCCCE
Confidence 4444444444 667777765 1111111 122346789999987766
Q ss_pred EEE-EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 271 LVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 271 l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
|.. -+..+.|..+++..... +. ...........+++. +.++++-...+.|...+. +|+....+.
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~------~~----~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHR------KA----VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSC------EE----EECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCce------EE----EEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 544 45567899999875321 11 111122334455555 445555556677777774 665555543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.7 Score=51.84 Aligned_cols=232 Identities=9% Similarity=-0.063 Sum_probs=127.9
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+.+....|+.+++..+.....+.... .+.+++|. +..+ .++.+- ..+.|..+++....
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~~~~--~~~gl~~d-------~~~~---~ly~~D~~~~~I~r~~~~g~~------ 149 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLE--NAIALDFH-------HRRE---LVFWSDVTLDRILRANLNGSN------ 149 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEECSCS--CEEEEEEE-------TTTT---EEEEEETTTTEEEEEETTSCC------
T ss_pred ceeEeecCccceeeccCCCcEEEEecCCC--ccEEEEEe-------cCCC---eEEEEeCCCCcEEEEecCCCC------
Confidence 56777777789999988766544444333 58999998 4331 444443 46888888876321
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE- 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~- 192 (1088)
....+.........+++.+ .+..| ++-...+.|.+.++........+... ......+++ +|.
T Consensus 150 ---------~~~~~~~~~~~p~glavd~---~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~-l~~P~giav---dp~~ 213 (386)
T 3v65_B 150 ---------VEEVVSTGLESPGGLAVDW---VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAIAL---HPME 213 (386)
T ss_dssp ---------EEEEECSSCSCCCCEEEET---TTTEEEEEETTTTEEEECBTTSCSCEEEECSS-CSCEEEEEE---ETTT
T ss_pred ---------cEEEEeCCCCCccEEEEEe---CCCeEEEEcCCCCeEEEEeCCCCceEEeecCC-CCCCcEEEE---EcCC
Confidence 1111111223456788887 55544 44455678888887654433222211 111233343 233
Q ss_pred CcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+.+..+-... +.|...++. ...........-....+|+++|+++.|
T Consensus 214 g~ly~td~~~~~~I~r~~~d---------------------------------G~~~~~~~~~~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 214 GTIYWTDWGNTPRIEASSMD---------------------------------GSGRRIIADTHLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp TEEEEEECSSSCEEEEEETT---------------------------------SCSCEEEECSSCSCEEEEEEEGGGTEE
T ss_pred CeEEEeccCCCCEEEEEeCC---------------------------------CCCcEEEEECCCCCeeeEEEeCCCCEE
Confidence 3334443333 566666665 111111222334567899999876665
Q ss_pred E-EEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 272 V-SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 272 ~-s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
. +-+..+.|..+++..... +. ...........+++. +.++++-...+.|..++. +|+....+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~------~~----~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 261 YWVDAKHHVIERANLDGSHR------KA----VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEETTTTEEEEECTTSCSC------EE----EECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEECCCCEEEEEeCCCCee------EE----EEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 4 445567888888765321 11 111122334555555 555666667788888884 676665554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.66 Score=52.07 Aligned_cols=222 Identities=9% Similarity=-0.079 Sum_probs=122.5
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~ 167 (1088)
..|..+....|+.+++.... ... +......+..++|.+ .++.|+ +-...+.|..+++...
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~-------------~~~---~~~~~~~~~gl~~d~---~~~~ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSE-------------YTL---LLNNLENAIALDFHH---RRELVFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp CEEEEECBSCEEEECTTSCC-------------CEE---EECSCSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSC
T ss_pred ceeEeecCccceeeccCCCc-------------EEE---EecCCCccEEEEEec---CCCeEEEEeCCCCcEEEEecCCC
Confidence 45555566777777765322 111 112235688999997 555554 4456788999998766
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
.....+..... ....+++- ...+.+.++-...+.|.+.++. ...
T Consensus 149 ~~~~~~~~~~~-~p~glavd--~~~g~lY~~d~~~~~I~~~~~d---------------------------------g~~ 192 (386)
T 3v65_B 149 NVEEVVSTGLE-SPGGLAVD--WVHDKLYWTDSGTSRIEVANLD---------------------------------GAH 192 (386)
T ss_dssp CEEEEECSSCS-CCCCEEEE--TTTTEEEEEETTTTEEEECBTT---------------------------------SCS
T ss_pred CcEEEEeCCCC-CccEEEEE--eCCCeEEEEcCCCCeEEEEeCC---------------------------------CCc
Confidence 54333221111 01112221 1234444444455666666654 111
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEE-CC-CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEE
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVS-DD-RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FII 322 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~D-g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~ 322 (1088)
....+...-.....+++.|.+..|..+. .. +.|...++..... .. .....-.....++++ +. +++
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~----~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RI----IADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSCEEEEEEEGGGTEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------EE----EEECCCCCeeeEEEeCCCCEEEE
Confidence 1222233346689999999777665544 34 6777777765321 11 111223346788886 34 445
Q ss_pred EEeCCCcEEEEcCCCceeEEEc-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 323 TAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 323 sg~~Dg~i~vWd~~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+-...+.|..++++|.....+. .... ....+++. .+.++++-...+.|..++.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEE-CCEEEEeeCCCCeEEEEEC
Confidence 5556688999999765544432 2222 46788883 4455566666778888873
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.32 Score=55.61 Aligned_cols=201 Identities=12% Similarity=0.098 Sum_probs=104.7
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEc-CC----cEEEEEcCCCceE--EEeccCCceeEEEEeeecCCC-CCcEEEEEecC
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCS-DN----SIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNL-EALRIASGTIY 202 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~-Dg----~V~iWd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d 202 (1088)
.......++|++ +++.|+++.. ++ .+...+. .+... ..+.... ....+++ ++ ++.++++-...
T Consensus 177 ~~~~P~~ia~d~---~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~--~p~giav---dp~~g~lyv~d~~~ 247 (430)
T 3tc9_A 177 GLSKVRTICWTH---EADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQ--NCNGAET---HPINGELYFNSWNA 247 (430)
T ss_dssp CCSCEEEEEECT---TSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECS--SCCCEEE---CTTTCCEEEEETTT
T ss_pred CCCCcceEEEeC---CCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCC--CceEEEE---eCCCCEEEEEECCC
Confidence 445688999999 9996666543 22 2333443 22211 1111000 0112222 45 56666666677
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee--eEEEeCCCCCEEEEEEcCCCCE-EEEEECCCc
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN--LFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRS 279 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~ 279 (1088)
+.|..++.. .... +.. .+.......++|+|++++ +++-...+.
T Consensus 248 ~~V~~~~~~---------------------------------~~~~~~~~~-~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 248 GQVFRYDFT---------------------------------TQETTPLFT-IQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TEEEEEETT---------------------------------TTEEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred CEEEEEECC---------------------------------CCcEEEEEE-cCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 888888876 2221 111 122345789999999995 455556788
Q ss_pred EEEEEcCCC--cccCCCCceeeece-eeecc---------CcceE-EEEEC----------CCEEEEEeCCCcEEEEcCC
Q 001391 280 ARIWEVRAE--YWKDSDSIEEVGSS-VLYGH---------NARVW-DCCLT----------DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 280 v~iWd~~~~--~~~~~~~~~~i~~~-~~~~h---------~~~I~-~v~~~----------~~~l~sg~~Dg~i~vWd~~ 336 (1088)
|..++.... ... ....+... ...+. -.... .++.. +.++++=...+.|+.++.+
T Consensus 294 I~~~~~d~~~~~~~---~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~ 370 (430)
T 3tc9_A 294 ILRSDYDWKTKRLT---TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ 370 (430)
T ss_dssp EEEEEEETTTTEEC---CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT
T ss_pred EEEEeCCccccccc---ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC
Confidence 988876542 110 00001000 00000 01122 34442 2344444566788888877
Q ss_pred CceeEEEcc----cCC------------CCeEEEEEcCC-CCEEEEEeCCCCEEEEEc
Q 001391 337 GKQLKMIKE----HIG------------RGIWRCLYDSL-SSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 337 ~~~~~~~~~----h~~------------~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~ 377 (1088)
|+....... ..+ ..-+.++++++ +.++++-.....|+.+++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 754433321 000 13678999994 655555556677887765
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.4 Score=52.20 Aligned_cols=191 Identities=13% Similarity=0.207 Sum_probs=109.9
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETC 119 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~ 119 (1088)
.+-|.|||+ +|++++.+.. + +++.+...|.+-. .|+..+..+++-. +++|++|++.....
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g-~~nnVD~r~~~~l---~g~~~dla~as~R~~~~n~l~vf~iDp~~~---------- 111 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--G-KLNNVDIRYDFPL---NGKKVDIAAASNRSEGKNTIEIYAIDGKNG---------- 111 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--S-CEEEEEEEEEEEE---TTEEEEEEEEEECSTTCCEEEEEEECTTTC----------
T ss_pred CCCEEEEcC-CCcEEEEccC--C-CcccEEEeccccc---CCceEeEEEEeCCCCCCCeEEEEEECCCCC----------
Confidence 588999999 8999988764 3 6888888753210 1211123344433 47899999863220
Q ss_pred cccceeeec--c-CCC-CcEEEEEE--ecccCCCC-EEEEEEcCCcEEEEEcC-------CCceEEEeccCCceeEEEEe
Q 001391 120 VNLSLVQSL--P-RLS-HWVFDVCF--LKVCNGNR-SLAIGCSDNSIRVWDIS-------NSSIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 120 ~~~~~~~~l--~-~h~-~~I~~v~f--~p~~~d~~-~lasgs~Dg~V~iWd~~-------~~~~~~~~~~~~~~~~~s~~ 185 (1088)
.++.+... . +.. ..+..+++ +| ..+. ++++...+|.+..|++. +.+.+.++..+.. .-.+.
T Consensus 112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~--~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq--~Egcv 186 (355)
T 3amr_A 112 -TLQSMTDPDHPIATAINEVYGFTLYHSQ--KTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ--TEGMA 186 (355)
T ss_dssp -CEEECSCTTSCEECCCSSCCCEEEEECT--TTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC--EEEEE
T ss_pred -ceeeccccccCcCCCCCCeeEEEEEecC--CCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC--cceEE
Confidence 01222111 1 111 56777888 55 1333 68888889999999983 2344566654432 22222
Q ss_pred eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CC-CCCEEEEE
Q 001391 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GH-EGSIFRIE 263 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh-~~~V~~v~ 263 (1088)
+ ++....|+.+-.+..|..++.+ +. ...+.+.+..+. +| ...+..|+
T Consensus 187 v---Dd~~g~Lyv~eEd~GIw~~da~-----p~-----------------------~~~~~~~v~~~~~g~l~aDvEGLa 235 (355)
T 3amr_A 187 A---DDEYGRLYIAEEDEAIWKFSAE-----PD-----------------------GGSNGTVIDRADGRHLTRDIEGLT 235 (355)
T ss_dssp E---ETTTTEEEEEETTTEEEEEECS-----TT-----------------------SCSCCEEEEEBSSSSBCSCEEEEE
T ss_pred E---cCCCCeEEEecccceEEEEeCC-----cC-----------------------CCCCceEEEEecCCccccCcceEE
Confidence 2 3556788888888654444433 00 000223343332 22 24688888
Q ss_pred E--cCCCC-EEEEEE-CCCcEEEEEcC
Q 001391 264 W--SSCGS-KLVSVS-DDRSARIWEVR 286 (1088)
Q Consensus 264 ~--sp~g~-~l~s~s-~Dg~v~iWd~~ 286 (1088)
+ .++++ +|++++ .+.+..+||..
T Consensus 236 i~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 236 IYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8 45555 666665 56789999986
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.57 E-value=0.81 Score=49.75 Aligned_cols=232 Identities=14% Similarity=-0.025 Sum_probs=125.2
Q ss_pred CEEEEEeCCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~ 112 (1088)
.+|+.+....|+..|+.... ....+... ..+.+++|. +..+ .+..+ ...+.|..+++.....
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~--~~~~~ld~d-------~~~~---~lyw~D~~~~~I~r~~~~g~~~--- 69 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVGGL--EDAAAVDFV-------FSHG---LIYWSDVSEEAIKRTEFNKTES--- 69 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEEEE--EEEEEEEEE-------GGGT---EEEEEETTTTEEEEEETTSSSC---
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEecCC--CccEEEEEE-------eCCC---EEEEEECCCCcEEEEEccCCCc---
Confidence 56777777889999998763 22222222 247789998 4321 34333 3468888888764210
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL 191 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~ 191 (1088)
....+ ...-.....+++.+ .+..| ++-...+.|.++++........+. ........+++ .+
T Consensus 70 --------~~~~~---~~~l~~p~glavd~---~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giav---dp 131 (318)
T 3sov_A 70 --------VQNVV---VSGLLSPDGLACDW---LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIAL---DP 131 (318)
T ss_dssp --------CCEEE---EECCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEE---EG
T ss_pred --------eEEEE---cCCCCCccEEEEEc---CCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEE---eC
Confidence 00111 11123466788887 55544 444556789999986543322221 11111223333 23
Q ss_pred CCcEEEEEe--cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCC
Q 001391 192 EALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 192 ~~~~l~sg~--~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g 268 (1088)
.+..|+... ..+.|...++. +.....+ ...-....+|+++|++
T Consensus 132 ~~g~ly~td~~~~~~I~r~~~d----------------------------------G~~~~~~~~~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 132 SSGFMYWTDWGEVPKIERAGMD----------------------------------GSSRFIIINSEIYWPNGLTLDYEE 177 (318)
T ss_dssp GGTEEEEEECSSSCEEEEEETT----------------------------------SCSCEEEECSSCSCEEEEEEETTT
T ss_pred CCCEEEEEecCCCCEEEEEEcC----------------------------------CCCeEEEEECCCCCccEEEEeccC
Confidence 333333333 24666666665 1111122 2233567899999977
Q ss_pred CEEEE-EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 269 SKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 269 ~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
+.|.. -+..+.|..+|+..... +.+ ..+.......+++. +.++.+-...+.|..++. +|+....+.
T Consensus 178 ~~lY~aD~~~~~I~~~d~dG~~~------~~~----~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 178 QKLYWADAKLNFIHKSNLDGTNR------QAV----VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC------EEE----ECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEECCCCEEEEEcCCCCce------EEE----ecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 66554 45567899999875321 211 12223344556655 455556556677888887 666555443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.55 E-value=1.5 Score=49.42 Aligned_cols=240 Identities=9% Similarity=-0.069 Sum_probs=132.9
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~ 113 (1088)
..+|+......|+..++........+.. ...+.+++|. +..+ .+..+ ...+.|..+++.....
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~~--~~~~~~l~~d-------~~~~---~lywsD~~~~~I~~~~~~g~~~---- 146 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIPN--LRNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG---- 146 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEECS--CSCEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC---------
T ss_pred cceeEEeccceeEEEccCCcceeEeccc--cCcceEEeee-------eccC---ceEEEecCCCeEEEEEcccCCC----
Confidence 3577777888999999987655444443 2358999998 4331 34443 3468888888763110
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL- 191 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~- 191 (1088)
.......+.........+++.+ .+..|+.+ ...+.|.+.++........+.... .....+++ +|
T Consensus 147 -------~~~~~~~~~~~~~~p~glavD~---~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~-~~P~~iav---dp~ 212 (400)
T 3p5b_L 147 -------VSSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-SKPRAIVV---DPV 212 (400)
T ss_dssp --------CCCEEEECSSCSCEEEEEEET---TTTEEEEEETTTTEEEEECTTTCSEEEEEECSS-CCEEEEEE---ETT
T ss_pred -------CCcceEEEeCCCCCcccEEEEe---cCCceEEEECCCCeEEEEeCCCCceEEEEeCCC-CCcceEEE---ecc
Confidence 0011111222335678899987 55545444 557789998887654433332111 11233443 23
Q ss_pred CCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 192 EALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 192 ~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
.+.+..+-. ..+.|...++. ...........-....+|+++++++.
T Consensus 213 ~g~ly~td~~~~~~I~~~~~d---------------------------------G~~~~~~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 213 HGFMYWTDWGTPAKIKKGGLN---------------------------------GVDIYSLVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp TTEEEEEECSSSCCEEEEETT---------------------------------SCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred cCeEEEEeCCCCCEEEEEeCC---------------------------------CCccEEEEECCCCceEEEEEEeCCCE
Confidence 233333322 23566666665 11111122333467899999988777
Q ss_pred EEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 271 LVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 271 l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
|..+ +..+.|...|+..... +.+. ...+.-.....+++. +.++.+-...+.|..++. +|+.+..+..
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~------~~~~--~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp EEEEETTTTEEEEEETTSCCC------EEEE--ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCcc------EEEE--eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 6555 4567899999865322 2221 111122234455655 556666677788888885 7766666543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.51 E-value=1.1 Score=49.57 Aligned_cols=194 Identities=9% Similarity=-0.083 Sum_probs=110.7
Q ss_pred CcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
..+..++|++ ..+.|+.. ...+.|..+++........+..... ....+++- ..++.+..+-...+.|.+.++.
T Consensus 73 ~~~~~l~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd--~~~g~ly~~d~~~~~I~~~~~d 146 (349)
T 3v64_C 73 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVD--WVHDKLYWTDSGTSRIEVANLD 146 (349)
T ss_dssp SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCEEEEE--TTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEec---cccEEEEEeccCCceEEEecCCCCceEEEeCCCC-CccEEEEe--cCCCeEEEEcCCCCeEEEEcCC
Confidence 4588999997 55555444 4678899999876654333222111 11123331 1234555555566788888876
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE-ECC-CcEEEEEcCCCc
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDD-RSARIWEVRAEY 289 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~-s~D-g~v~iWd~~~~~ 289 (1088)
.......+...-.....++++|.+..|..+ ... +.|...++....
T Consensus 147 ---------------------------------G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 147 ---------------------------------GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp ---------------------------------SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred ---------------------------------CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 111122223344567899999976655444 444 678777776532
Q ss_pred ccCCCCceeeeceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcCCCceeEEEc-ccCCCCeEEEEEcCCCCEEEE
Q 001391 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 290 ~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~t 365 (1088)
. +. .....-.....++++ +..| ++-...+.|..++++|.....+. .... ....+++. ++.+.++
T Consensus 194 ~------~~----~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~-~~~ly~t 261 (349)
T 3v64_C 194 R------RI----IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSLYWT 261 (349)
T ss_dssp C------EE----SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEE-TTEEEEE
T ss_pred c------EE----EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEE-CCEEEEe
Confidence 1 11 111222346788886 4444 44456678999999765544432 2222 46788883 4455556
Q ss_pred EeCCCCEEEEEc
Q 001391 366 AGFDSAIKVHQF 377 (1088)
Q Consensus 366 g~~Dg~I~iwd~ 377 (1088)
-...+.|...+.
T Consensus 262 d~~~~~V~~~~~ 273 (349)
T 3v64_C 262 DWHTKSINSANK 273 (349)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCeEEEEEc
Confidence 556777777773
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=1.4 Score=47.89 Aligned_cols=222 Identities=8% Similarity=-0.100 Sum_probs=122.2
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCC--
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISN-- 166 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~-- 166 (1088)
.|..+..+.|+..++.... ....+ .....+..++|++ .++.|+.. ...+.|..+++..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~---------------~~~~~-~~~~~p~g~~~d~---~~~~ly~~D~~~~~I~~~~~~g~~ 63 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSE---------------YTSLI-PNLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAH 63 (316)
T ss_dssp EEEEECBSSEEEEETTSCC---------------CEEEE-CSCSSEEEEEEET---TTTEEEEEETTTTEEEEEEC----
T ss_pred EEEEECCCeEEEEECCCcc---------------eEehh-cCCCceEEEEEEe---CCCEEEEEECCCCcEEEEECCCCC
Confidence 4555666778888887532 11112 2235678999998 66555544 4568899999876
Q ss_pred --CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccc
Q 001391 167 --SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1088)
Q Consensus 167 --~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 244 (1088)
......+..... ....+++- ..++.+.++-...+.|.+.++.
T Consensus 64 ~~~~~~~~~~~~~~-~p~glavd--~~~~~ly~~d~~~~~I~~~~~~--------------------------------- 107 (316)
T 1ijq_A 64 GVSSYDTVISRDIQ-APDGLAVD--WIHSNIYWTDSVLGTVSVADTK--------------------------------- 107 (316)
T ss_dssp ----CEEEECSSCS-CCCEEEEE--TTTTEEEEEETTTTEEEEEETT---------------------------------
T ss_pred CCcccEEEEeCCCC-CcCEEEEe--ecCCeEEEEECCCCEEEEEeCC---------------------------------
Confidence 221222211111 11223331 1234444555567788888775
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC--CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCE
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD--RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D--g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~ 320 (1088)
.......+...-.....++++|.+..|..+... +.|...++..... +.+ ....-.....++++ +..
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------~~~----~~~~~~~P~gla~d~~~~~ 177 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSL----VTENIQWPNGITLDLLSGR 177 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEE----ECSSCSCEEEEEEETTTTE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------EEE----EECCCCCceEEEEeccCCE
Confidence 111111222334567899999977766554432 5777777754211 111 11223456788887 445
Q ss_pred EE-EEeCCCcEEEEcCCCceeEEEccc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 321 II-TAGEDCTCRVWGSDGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 321 l~-sg~~Dg~i~vWd~~~~~~~~~~~h--~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|+ +-...+.|..++++|.....+... .......+++. .+.+.++-...+.|..++.
T Consensus 178 lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 178 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 54 445667899999977555554321 11135678885 3555566666778888876
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.13 Score=63.82 Aligned_cols=200 Identities=10% Similarity=-0.020 Sum_probs=106.9
Q ss_pred CCCC-cEEEEEEe-cccCCCCEEEEEEc-C----CcEEEEEcCCC-ceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 130 RLSH-WVFDVCFL-KVCNGNRSLAIGCS-D----NSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 130 ~h~~-~I~~v~f~-p~~~d~~~lasgs~-D----g~V~iWd~~~~-~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
+|.- .+...+|+ | ||++||-+.. + .+|+++|+.++ +.+.. .......++.+ ++|+..|+....
T Consensus 170 ~~~~~~~~~~~~S~P---DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~~~~~~~~W---spDg~~l~y~~~ 240 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPP---EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVSGTNGEIVW---GPDHTSLFYVTK 240 (751)
T ss_dssp TCSCCEEEEEEECTT---TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEEEECSCCEE---CSSTTEEEEEEE
T ss_pred CCCeEEEeeeEecCC---CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cccCceeeEEE---ecCCCEEEEEEE
Confidence 4443 68889999 9 9998875533 2 25999999988 63211 00001112222 578877766655
Q ss_pred C-----CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEE
Q 001391 202 Y-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 202 d-----g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
+ ..|.++++.+. .......+. .+......+.|+|||++|+..+
T Consensus 241 d~~~~~~~v~~~~lgt~-------------------------------~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 241 DETLRENKVWRHVMGKL-------------------------------QSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp CTTCCEEEEEEEETTSC-------------------------------GGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCEEEEEECCCC-------------------------------chhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 4 25666666511 001112222 2334567889999999887655
Q ss_pred C---CCcEEEEEcCCCcccCCCCcee-eeceeeeccCcceEEEEEC-CCEEE-EEeCC--C--cEEEEcCCC-ceeEE-E
Q 001391 276 D---DRSARIWEVRAEYWKDSDSIEE-VGSSVLYGHNARVWDCCLT-DSFII-TAGED--C--TCRVWGSDG-KQLKM-I 343 (1088)
Q Consensus 276 ~---Dg~v~iWd~~~~~~~~~~~~~~-i~~~~~~~h~~~I~~v~~~-~~~l~-sg~~D--g--~i~vWd~~~-~~~~~-~ 343 (1088)
. ...|.++|+.++.. +. +. ..........+++.|+ +..|+ ....+ + .|..+++.. ..... +
T Consensus 290 ~~~~~~~l~~~d~~~~~~------~~~~~-~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l 362 (751)
T 2xe4_A 290 QSPETAEVHLLDLRKGNA------HNTLE-IVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL 362 (751)
T ss_dssp ECSSCEEEEEEESSSCTT------CCCEE-ESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE
T ss_pred cCCCCceEEEEECCCCCC------CceeE-EeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE
Confidence 2 34678888876421 11 01 0222334556777754 55444 44443 2 566666642 22222 2
Q ss_pred cccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 344 KEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 344 ~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
-.+.. ..+..+.+. .+.++++...|+..++|-+
T Consensus 363 i~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 363 VDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp ECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred ECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 22332 134555554 2345667777886666543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.92 Score=51.77 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=66.2
Q ss_pred CEEEEEEcCCCCEE-EEEECCCcEEEEEcCC--CcccCCCCceeeece-eeec---------cCcceEEEEE--------
Q 001391 258 SIFRIEWSSCGSKL-VSVSDDRSARIWEVRA--EYWKDSDSIEEVGSS-VLYG---------HNARVWDCCL-------- 316 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~--~~~~~~~~~~~i~~~-~~~~---------h~~~I~~v~~-------- 316 (1088)
.-..++|+|++++| ++-...+.|+.++... +... ....+.-. ...+ .-.....+++
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~---~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA---VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC---CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC---cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 34579999999854 5555678898888753 2110 00011000 0000 1123567888
Q ss_pred -C--CCEEEEEeCCCcEEEEcCCCceeEEEcccC----------------CCCeEEEEEc-CCCCEEEEEeCCCCEEEEE
Q 001391 317 -T--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI----------------GRGIWRCLYD-SLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 317 -~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~----------------~~~V~~l~~~-~dg~~l~tg~~Dg~I~iwd 376 (1088)
. +.++++-...+.|+.++.+|.......... -..-+.|+++ +++.++++=...+.|+.++
T Consensus 351 dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 351 EEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp SSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred cCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 5 345555566788999988775433331100 0126789999 6666666655667788776
Q ss_pred c
Q 001391 377 F 377 (1088)
Q Consensus 377 ~ 377 (1088)
+
T Consensus 431 ~ 431 (433)
T 4hw6_A 431 P 431 (433)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=3.3 Score=49.46 Aligned_cols=171 Identities=13% Similarity=0.055 Sum_probs=89.6
Q ss_pred CCCceEEecCCCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 3 KKDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 3 d~~i~iWdl~~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
.+.|+.-++.... ......+|+|+ +. +..|.... .+.|+.+++........+....-....+++
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~--~~----~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlA 90 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFV--FS----HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 90 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEE--TT----TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEE
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEE--eC----CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEE
Confidence 3567777877542 12446799999 86 55666655 488999998765321222211213578999
Q ss_pred ecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
+. +.++ .+..+ .+.+.|.+.+++... .+.+ +...-.....|++.| .+..|+
T Consensus 91 vD-------~~~~---~ly~~d~~~~~I~v~~~dG~~-------------~~~l--~~~~l~~P~~Iavdp---~~g~ly 142 (619)
T 3s94_A 91 CD-------WLGE---KLYWTDSETNRIEVSNLDGSL-------------RKVL--FWQELDQPRAIALDP---SSGFMY 142 (619)
T ss_dssp EE-------TTTT---EEEEEETTTTEEEEEETTSCS-------------CEEE--ECSSCSCCCCEEEET---TTTEEE
T ss_pred EE-------ecCC---EEEEEeCCCCEEEEEECCCCC-------------EEEE--EeCCCCCCceEEEec---CCCeEE
Confidence 98 5331 34433 347899999887321 1111 112334567899998 666555
Q ss_pred EEEc--CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-CcEEEEEecCCeEEEEEec
Q 001391 152 IGCS--DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 152 sgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~ 211 (1088)
.... .+.|...++............ ......+++ +++ +.+..+-...+.|...++.
T Consensus 143 ~tD~g~~~~I~r~~~dG~~~~~l~~~~-~~~P~Glal---d~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 143 WTDWGEVPKIERAGMDGSSRFIIINSE-IYWPNGLTL---DYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSS-CSSEEEEEE---ETTTTEEEEEETTTCCEEEESSS
T ss_pred EeccCCCCEEEEEECCCCceEEEEeCC-CCCCcEEEE---EccCCEEEEEeCCCCeEEEecCC
Confidence 5542 356666666543222222111 111223333 233 3344444455677777765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.13 E-value=0.98 Score=49.10 Aligned_cols=224 Identities=9% Similarity=-0.096 Sum_probs=124.3
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~ 167 (1088)
..|..+....|+..+++.... . ....+. ....+..++|.+ .++.|+ +-...+.|..+++...
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~---~-------~~~~~~----~~~~~~~ld~d~---~~~~lyw~D~~~~~I~r~~~~g~ 67 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKE---N-------ATIVVG----GLEDAAAVDFVF---SHGLIYWSDVSEEAIKRTEFNKT 67 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTS---C-------CEEEEE----EEEEEEEEEEEG---GGTEEEEEETTTTEEEEEETTSS
T ss_pred cEEEEEccCeEEEEECCCCce---E-------EEEEec----CCCccEEEEEEe---CCCEEEEEECCCCcEEEEEccCC
Confidence 456666678899999874320 0 011111 123577899988 555444 4455778999998765
Q ss_pred ceE-EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 168 SII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 168 ~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
... ..+..... ....+++- ...+.+..+-...+.|.++++. ..
T Consensus 68 ~~~~~~~~~~l~-~p~glavd--~~~g~ly~~d~~~~~I~~~~~d---------------------------------G~ 111 (318)
T 3sov_A 68 ESVQNVVVSGLL-SPDGLACD--WLGEKLYWTDSETNRIEVSNLD---------------------------------GS 111 (318)
T ss_dssp SCCCEEEEECCS-CCCEEEEE--TTTTEEEEEETTTTEEEEEETT---------------------------------SC
T ss_pred CceEEEEcCCCC-CccEEEEE--cCCCeEEEEECCCCEEEEEECC---------------------------------CC
Confidence 321 11111100 01122221 1244555555566788888876 11
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE-
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI- 321 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l- 321 (1088)
.....+........++++.|.+.+|..+.. .+.|...++..... +. .....-.....++++ +..|
T Consensus 112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~----~~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------FI----IINSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSCEEEEEEETTTTEEE
T ss_pred cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------EE----EEECCCCCccEEEEeccCCEEE
Confidence 111122244456789999997766655542 46777777764221 11 111222345788887 4444
Q ss_pred EEEeCCCcEEEEcCCCceeEEEcc-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 322 ITAGEDCTCRVWGSDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~~~~~~~~~~~-h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
++=...+.|..++++|.....+.. ... ....+++..+ .++.+-...+.|..++.
T Consensus 182 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~~-~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED-ILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEETT-EEEEEETTTTEEEEEET
T ss_pred EEECCCCEEEEEcCCCCceEEEecCCCC-CceEEEEeCC-EEEEEecCCCeEEEEEC
Confidence 444566889999997655554432 223 4667887643 45556556778888887
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.10 E-value=2.4 Score=47.68 Aligned_cols=222 Identities=7% Similarity=-0.104 Sum_probs=124.4
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~ 167 (1088)
..|..+....|+..++.... ... +......+..++|++ ..+.|+.. ...+.|+.+++...
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~-------------~~~---~~~~~~~~~~l~~d~---~~~~lywsD~~~~~I~~~~~~g~ 144 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSE-------------YTS---LIPNLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRA 144 (400)
T ss_dssp CEEEEEETTEEEEECTTSCS-------------CEE---EECSCSCEEEEEEET---TTTEEEEEETTTTEEEEEEC---
T ss_pred ceeEEeccceeEEEccCCcc-------------eeE---eccccCcceEEeeee---ccCceEEEecCCCeEEEEEcccC
Confidence 45666667888888887432 111 122346789999998 66655554 45678888888652
Q ss_pred c----eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 168 S----IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 168 ~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
. ....+.... .....+++- ...+.+.++-...+.|.+.++.
T Consensus 145 ~~~~~~~~~~~~~~-~~p~glavD--~~~~~lY~~d~~~~~I~~~~~~-------------------------------- 189 (400)
T 3p5b_L 145 HGVSSYDTVISRDI-QAPDGLAVD--WIHSNIYWTDSVLGTVSVADTK-------------------------------- 189 (400)
T ss_dssp ---CCCEEEECSSC-SCEEEEEEE--TTTTEEEEEETTTTEEEEECTT--------------------------------
T ss_pred CCCCcceEEEeCCC-CCcccEEEE--ecCCceEEEECCCCeEEEEeCC--------------------------------
Confidence 1 222222111 112233331 1234455555556777777765
Q ss_pred cceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC
Q 001391 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (1088)
Q Consensus 244 ~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~ 319 (1088)
.......+...-....+|++.|.+.+|..+.. .+.|...++..... .. .....-.....++++ +.
T Consensus 190 -g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~~----~~~~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 190 -GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YS----LVTENIQWPNGITLDLLSG 258 (400)
T ss_dssp -TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------EE----EECSSCSCEEEEEEETTTT
T ss_pred -CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------EE----EEECCCCceEEEEEEeCCC
Confidence 22222223334456889999997766655442 36788777765321 11 112222456788887 45
Q ss_pred EEEEE-eCCCcEEEEcCCCceeEEEccc---CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 320 FIITA-GEDCTCRVWGSDGKQLKMIKEH---IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 320 ~l~sg-~~Dg~i~vWd~~~~~~~~~~~h---~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.|+.+ ...+.|...+++|.....+... -. ...++++. .+.++++-...+.|..++.
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~-~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-HPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EEEEEETTTTEEEEEETTSCCCEEEEECSSTTS-SEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC-CCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 55544 4567899999977655554321 22 35577774 3345566666778888874
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.35 Score=59.79 Aligned_cols=113 Identities=7% Similarity=-0.019 Sum_probs=65.6
Q ss_pred CCCC-CEEEEEEc-CCCCEEEEEEC-CC----cEEEEEcCCC-cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE
Q 001391 254 GHEG-SIFRIEWS-SCGSKLVSVSD-DR----SARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 254 gh~~-~V~~v~~s-p~g~~l~s~s~-Dg----~v~iWd~~~~-~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
+|.- .+...+|| |||++|+-+.. +| .|+++|+.++ +. .. . .+.. ....+.|+ +..|+.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~--~--~~~~---~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IA--D--KVSG---TNGEIVWGPDHTSLFY 237 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CC--C--CEEE---ECSCCEECSSTTEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CC--c--cccC---ceeeEEEecCCCEEEE
Confidence 3443 67889999 99998875433 22 5999999886 42 00 0 1111 12356777 445555
Q ss_pred EeCC-----CcEEEEcC-CCc--eeEEEcccCCCCeEEEEEcCCCCEEEEEeC---CCCEEEEEcC
Q 001391 324 AGED-----CTCRVWGS-DGK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAGF---DSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~D-----g~i~vWd~-~~~--~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~---Dg~I~iwd~~ 378 (1088)
...| ..|.++++ ++. ....+......-..++.++|||++|+.... ...|.++|+.
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 5544 25777887 332 122332222223567899999998776553 2345566664
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.83 E-value=4.5 Score=49.69 Aligned_cols=237 Identities=8% Similarity=-0.077 Sum_probs=124.4
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+......|+..++........+... ..+.+|+|. +..+ .++.+ ...+.|+.+++.....
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~~--~~~~gl~~d-------~~~~---~lY~sD~~~~~I~~~~l~g~~~----- 458 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNL--RNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG----- 458 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECSC--SSEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC----------
T ss_pred cccccccccceeEeeccCCcceeeecCC--CceEEEeec-------ccCC---eeEEeeccceeEEEEeccCCCC-----
Confidence 4666666678888888766554444432 257899998 4321 34433 3468888888763210
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE- 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~- 192 (1088)
.......+.........|++.+ .++.|+ +-...+.|.+.++........+... ......+++ ++.
T Consensus 459 ------~~~~~~vi~~~l~~P~GLAvD~---~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~-l~~P~gIaV---Dp~~ 525 (791)
T 3m0c_C 459 ------VSSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVV---DPVH 525 (791)
T ss_dssp ---------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEE---ETTT
T ss_pred ------CcceeEEEecCCCCcceeeeee---cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC-CCCcceEEE---ecCC
Confidence 0011122222335567899988 665444 4456788999998755433222211 111234444 233
Q ss_pred CcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+.+..+-.. .+.|.+.++. .......+...-....+|++++.++.|
T Consensus 526 g~LYwtD~g~~~~I~~~~~d---------------------------------G~~~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLN---------------------------------GVDIYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp TEEEEEECSSSCEEEEEETT---------------------------------SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred CCEEEecCCCCCeEEEEecC---------------------------------CCceEEEEeCCCCCceEEEEecCCCeE
Confidence 333333222 2566666665 111222223334678999999877766
Q ss_pred EEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC-EEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS-FIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 272 ~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~-~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
..+ .....|...++..... ..+. ...+.-.....+++.+. ++++-...+.|...+. +|+.+..+
T Consensus 573 YwaD~~~~~I~~~d~dG~~~------~~v~--~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTSCSC------EEEE--ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeCCCCcEEEEecCCCce------EEEe--cCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 555 4456788888865422 1111 11111223345555543 4444445566766664 55544444
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.8 Score=49.10 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC-----CcEEEEcCC
Q 001391 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D-----g~i~vWd~~ 336 (1088)
+++.++.|+.+ ..+..||+.+.+. +.+. .+.........+.+.+.+++.|+.+ ..+.+||..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W------~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHW------TNVT--PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcE------EeCC--CCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCC
Confidence 56666666654 4588899887654 2221 1111111223344456777777764 468889985
Q ss_pred CceeEEEccc-CCCCeEEEEEcCCCCEEEEEeCCC-----CEEEEEcC
Q 001391 337 GKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQ 378 (1088)
Q Consensus 337 ~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~Dg-----~I~iwd~~ 378 (1088)
...-..+... ..+.-.+++.. ++++++.||.++ .+.+||+.
T Consensus 231 ~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 231 TDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCCcccccEEEEcCC
Confidence 4444433221 11111122222 566777777653 45566664
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.51 E-value=3.2 Score=45.09 Aligned_cols=205 Identities=8% Similarity=0.080 Sum_probs=119.1
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc-CCCC---E-EEEEEc--CCcEEE
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-NGNR---S-LAIGCS--DNSIRV 161 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~-~d~~---~-lasgs~--Dg~V~i 161 (1088)
.+|++...+-+.+||+. .+.++.+.. +.++.+.+-|.- -.++ + +++... +++|++
T Consensus 42 ~ii~t~k~~gL~Vydl~----------------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~v 103 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLD----------------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI 103 (355)
T ss_dssp EEEEEETTTEEEEEETT----------------SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEE
T ss_pred EEEEEcCCCCEEEEcCC----------------CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEE
Confidence 56666668899999995 456666654 567777776610 0122 2 233333 589999
Q ss_pred EEcC--CCceEEEecc---C--Cc-eeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 162 WDIS--NSSIILEVHS---P--ER-CLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 162 Wd~~--~~~~~~~~~~---~--~~-~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
|++. +++ +..+.. + .. ...|.+++......+ .+++....+|.+..|++......
T Consensus 104 f~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g---------------- 166 (355)
T 3amr_A 104 YAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG---------------- 166 (355)
T ss_dssp EEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS----------------
T ss_pred EEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC----------------
Confidence 9774 333 444422 2 11 334555554433334 36788888899999998511000
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-Ccce
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARV 311 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-~~~I 311 (1088)
....+.++++.- .+.+..+...+...+|..+-++.-|..++...... ...+.+.. .-.++ ...+
T Consensus 167 ----------~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~---~~~~~v~~-~~~g~l~aDv 231 (355)
T 3amr_A 167 ----------YISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG---SNGTVIDR-ADGRHLTRDI 231 (355)
T ss_dssp ----------CEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC---SCCEEEEE-BSSSSBCSCE
T ss_pred ----------cccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC---CCceEEEE-ecCCccccCc
Confidence 014556666654 45788999999999999999986655555432210 00123321 11222 2357
Q ss_pred EEEEEC----C-CEEEEEe-CCCcEEEEcCC--CceeEEE
Q 001391 312 WDCCLT----D-SFIITAG-EDCTCRVWGSD--GKQLKMI 343 (1088)
Q Consensus 312 ~~v~~~----~-~~l~sg~-~Dg~i~vWd~~--~~~~~~~ 343 (1088)
-.+++. + .+|+..+ .+.++.+||.. .+.+..|
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 777763 2 3555444 67899999983 3444444
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.86 Score=49.04 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=52.4
Q ss_pred eEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC----CcEEE
Q 001391 89 FEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRV 161 (1088)
Q Consensus 89 ~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D----g~V~i 161 (1088)
.+++.+| .+.+.+||..... ...+..+......-..+. - ++.+++.|+.+ +.+.+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~-------------W~~~~~~p~~r~~~~~~~--~---~~~lyv~GG~~~~~~~~~~~ 74 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYS-------------WTDIRCPFEKRRDAACVF--W---DNVVYILGGSQLFPIKRMDC 74 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTE-------------EEECCCCSCCCBSCEEEE--E---TTEEEEECCBSSSBCCEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCC-------------EecCCCCCcccceeEEEE--E---CCEEEEEeCCCCCCcceEEE
Confidence 5566665 3578888877532 233332222221112222 2 66777777755 67889
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC------CeEEEEEec
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------NEIIVWKVD 211 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d------g~I~vwd~~ 211 (1088)
||..+.+....-..+......++.. .++.+++.|+.+ ..+.+||..
T Consensus 75 ~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 75 YNVVKDSWYSKLGPPTPRDSLAACA----AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp EETTTTEEEEEECCSSCCBSCEEEE----ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred EeCCCCeEEECCCCCccccceeEEE----ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 9998876543322222111122222 245566666654 457777766
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.37 E-value=3.7 Score=46.61 Aligned_cols=154 Identities=8% Similarity=0.001 Sum_probs=87.3
Q ss_pred eeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-
Q 001391 19 EISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (1088)
Q Consensus 19 ~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g- 95 (1088)
....|+++ | + ...|.+.. ++.|+.+|..++++..... ......+++|+ ++++ .++++-.
T Consensus 138 ~P~~lavd--p~~----~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d-------~~G~---~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFD--PKN----HNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWT-------HEAD---SMIITNDQ 199 (430)
T ss_dssp CCCEEEEE--TTE----EEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEEC-------TTSS---EEEEEECC
T ss_pred CCCEEEEC--CCC----CCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEe-------CCCC---EEEEEeCC
Confidence 35688898 7 4 34455544 4889999998776544433 33358899999 7772 3554433
Q ss_pred CC----EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceE
Q 001391 96 EK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 96 d~----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
++ .+.+.+.. .. ......+.. ......++++| ++. ++++-..++.|..++...+...
T Consensus 200 ~~~~~~~v~~~~~~-g~-------------~~~~~~l~~-~~~p~giavdp---~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 200 NNNDRPNNYILTRE-SG-------------FKVITELTK-GQNCNGAETHP---INGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp SCTTSEEEEEEEGG-GT-------------SCSEEEEEE-CSSCCCEEECT---TTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcccceEEEEeCC-Cc-------------eeeeeeecc-CCCceEEEEeC---CCCEEEEEECCCCEEEEEECCCCcEE
Confidence 22 23333322 11 110111111 23356788888 544 4444446788999999876542
Q ss_pred EEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEec
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~ 211 (1088)
.....+.......+++ ++++. +.++-...+.|..++..
T Consensus 262 ~~~~~~~~~~P~gia~---~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQF---HPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEECSSSSCCEEEEE---CTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCCCCcceeEEE---cCCCCEEEEEECCCCEEEEEeCC
Confidence 2222222122334554 57788 45555667889998876
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=1.1 Score=48.22 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=53.8
Q ss_pred CCCEEEEEECC-------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC-----CcEEEEc
Q 001391 267 CGSKLVSVSDD-------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWG 334 (1088)
Q Consensus 267 ~g~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D-----g~i~vWd 334 (1088)
+++.++.|+.+ ..+..||+.+.+. ..+. .+.........+.+.+.+++.|+.+ ..+.+||
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEW------TYIA--EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcE------EECC--CCccccccccEEEECCEEEEECCCCCCcccceEEEEe
Confidence 45555555432 3588899887654 2221 1111111223344457777777765 3688888
Q ss_pred CCCceeEEEcccCC-CCeEEEEEcCCCCEEEEEeCCC-----CEEEEEcCC
Q 001391 335 SDGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQA 379 (1088)
Q Consensus 335 ~~~~~~~~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg-----~I~iwd~~~ 379 (1088)
.....-..+..... +.-.+++. -++.+++.||.++ .+.+||+..
T Consensus 227 ~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 227 PTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCC
Confidence 85444444332111 11112222 2567777777654 467777754
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.53 Score=52.34 Aligned_cols=117 Identities=11% Similarity=0.121 Sum_probs=79.4
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeC---CcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFH---GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~---~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~ 111 (1088)
+.-|+...++.||.-++..+..-+.+.... -..|+.+..+ |+| .+||..|+..|.|-.+..+....
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlS-------psG----~lLAl~g~~~V~Vv~LP~~~~~~ 100 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISS-------TSG----DLLCLFNDNEIFVMEVPWGYSNV 100 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEEC-------TTS----SEEEEECSSEEEEEECCTTCSCC
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEEC-------CCC----CEEEEecCCeEEEEEecCccccC
Confidence 566777777888888887544344444431 1147889998 888 89999999999999998432111
Q ss_pred CCCCCccc-cccceeeecc------CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 112 SQYQPETC-VNLSLVQSLP------RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 112 ~~~~~~~~-~~~~~~~~l~------~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.. +.. ...+ .+++. .....|..+.|+|....+..|++-..|++||+||+..
T Consensus 101 ~~---~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 101 ED---VSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp CC---HHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cc---cccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 10 000 0011 11111 1357899999999776778999999999999999975
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.9 Score=49.17 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=48.0
Q ss_pred CCCEEEEEEC------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC-----cEEEEcC
Q 001391 267 CGSKLVSVSD------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGS 335 (1088)
Q Consensus 267 ~g~~l~s~s~------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg-----~i~vWd~ 335 (1088)
+++.++.|+. -..+.+||..+.+. +.+. .+......-.++.+.+.+++.|+.++ .+.+||.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW------KELA--PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEE------EECC--CCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeE------EECC--CCCCchhceEEEEECCEEEEEeccCCCCccceEEEEEC
Confidence 4556666655 24688899887644 2221 11111112234445577778887665 4778888
Q ss_pred CCceeEEEccc-CCCCeEEEEEcCCCCEEEEEeCC
Q 001391 336 DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 336 ~~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
....-..+... ..+.-.+++.. ++.+++.||.+
T Consensus 220 ~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~ 253 (315)
T 4asc_A 220 TDNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFA 253 (315)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEE
T ss_pred CCCeEEECCCCCCcccceeEEEE-CCEEEEECCcc
Confidence 54444333221 11111122222 55677777764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.08 E-value=2.7 Score=47.86 Aligned_cols=156 Identities=8% Similarity=-0.073 Sum_probs=84.1
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC-
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK- 97 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~- 97 (1088)
-.+|+++ |+ +....|..+. .+.|+.+|..+++...... ......+++++ ++| .++++...+
T Consensus 141 P~gvavd--~~--s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd-------~dG----~lyVad~~~~ 203 (433)
T 4hw6_A 141 IWRMMFD--PN--SNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFT-------LNG----DMVVVDDQSS 203 (433)
T ss_dssp CCEEEEC--TT--TTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEEC-------TTC----CEEEEECCSC
T ss_pred CceEEEc--cc--cCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEEC-------CCC----CEEEEcCCCC
Confidence 4588888 71 0023444443 4899999998887654433 23358999999 777 444443211
Q ss_pred --EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEe-
Q 001391 98 --RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEV- 173 (1088)
Q Consensus 98 --~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~- 173 (1088)
.-.++.+.... .+. ....+. .-.....++++| +...|..+ ..++.|+.+|..++.....+
T Consensus 204 ~~~~gv~~~~~~~----~~~-----~~~~~~----~~~~P~giavd~---~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~ 267 (433)
T 4hw6_A 204 DTNTGIYLFTRAS----GFT-----ERLSLC----NARGAKTCAVHP---QNGKIYYTRYHHAMISSYDPATGTLTEEEV 267 (433)
T ss_dssp TTSEEEEEECGGG----TTC-----CEEEEE----ECSSBCCCEECT---TTCCEEECBTTCSEEEEECTTTCCEEEEEE
T ss_pred cccceEEEEECCC----Cee-----cccccc----ccCCCCEEEEeC---CCCeEEEEECCCCEEEEEECCCCeEEEEEe
Confidence 11222222111 000 001111 123346688887 54445544 45678999998877663222
Q ss_pred ccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEec
Q 001391 174 HSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~ 211 (1088)
........+.+++ ++++. +.++-...+.|..+++.
T Consensus 268 ~~~~~~~~~~ia~---dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 268 MMDTKGSNFHIVW---HPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp ECSCCSSCEEEEE---CTTSSEEEEEETTTTEEEEEEBC
T ss_pred ccCCCCCcccEEE---eCCCCEEEEEeCCCCEEEEEeCC
Confidence 2111122233554 57787 44555567889988875
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.71 E-value=2.8 Score=44.91 Aligned_cols=106 Identities=10% Similarity=-0.016 Sum_probs=54.5
Q ss_pred CEEEEEe-C--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-C----CEEEEEEeccC
Q 001391 36 PFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELNFE 107 (1088)
Q Consensus 36 ~~laag~-d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d----~~v~iw~l~~~ 107 (1088)
.+++.|. + ..+.+||..+.+-...-.......-++++.. ++ .+++.+| + ..+.+||+...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--------~~----~lyv~GG~~~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--------DN----VVYILGGSQLFPIKRMDCYNVVKD 80 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--------TT----EEEEECCBSSSBCCEEEEEETTTT
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--------CC----EEEEEeCCCCCCcceEEEEeCCCC
Confidence 3555555 2 6899999988764321111111111233322 22 4555555 2 56777777643
Q ss_pred CCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC------CcEEEEEcCCCceEE
Q 001391 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSIIL 171 (1088)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D------g~V~iWd~~~~~~~~ 171 (1088)
. .+.+..+......-..+. - ++.+++.|+.+ ..+.+||..+.+...
T Consensus 81 ~-------------W~~~~~~p~~r~~~~~~~--~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 81 S-------------WYSKLGPPTPRDSLAACA--A---EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp E-------------EEEEECCSSCCBSCEEEE--E---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred e-------------EEECCCCCccccceeEEE--E---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 2 333333332222212222 2 66777777765 468899998876543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=7.9 Score=43.13 Aligned_cols=264 Identities=11% Similarity=0.088 Sum_probs=153.7
Q ss_pred CCCceEEecCCCce--eeeeE--EEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccc
Q 001391 3 KKDLSEWRLDVGQY--LGEIS--ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 3 d~~i~iWdl~~g~~--~~~V~--~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~ 78 (1088)
+..|.|-|+..+.. ..|+. +.-.+ |. .+.||.=.+.+|+|+|+++.+.+..+.-.+. |.--.|-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~AdsAIMn--P~----~~iiALrag~~lQiFnle~K~klks~~~~e~--VvfWkWi---- 114 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTDD--VTFWKWI---- 114 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCSEEEEC--SS----SSCEEEEETTEEEEEETTTTEEEEEEECSSC--CCEEEEE----
T ss_pred CCeEEEEECCCCCcceecccccceeeeC--CC----CcEEEEecCCeEEEEchHHhhhhcceecCCC--ceEEEec----
Confidence 34578888888662 22333 23345 66 6788877799999999999999988886453 5555564
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC----CCcEEEEEEecccCCCCEEEEEE
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h----~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+ ..|+.-.+..|.-|+++... .+.+.+..| ...|..-..++ +.++++..|
T Consensus 115 ---s~-----~~l~lVT~taVyHWsi~~~s--------------~P~kvFdR~~~L~~~QIInY~~d~---~~kW~~l~G 169 (494)
T 1bpo_A 115 ---SL-----NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTG 169 (494)
T ss_dssp ---ET-----TEEEEECSSEEEEEESSSSC--------------CCEEEEECCGGGTTCEEEEEEECT---TSSEEEEEE
T ss_pred ---CC-----CeEEEEcCCeeEEecccCCC--------------CchhheecchhcccceEEEEEECC---CCCeEEEEe
Confidence 33 57888889999999997532 122222222 35677777777 777666544
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
-. . .++ . ..|.+.+|..+
T Consensus 170 I~--------------------------~-------~~~-~-----v~G~mQLYS~e----------------------- 187 (494)
T 1bpo_A 170 IS--------------------------A-------QQN-R-----VVGAMQLYSVD----------------------- 187 (494)
T ss_dssp EE--------------------------E-------ETT-E-----EEEEEEEEEST-----------------------
T ss_pred ec--------------------------c-------cCC-c-----ccceEEEeecc-----------------------
Confidence 10 0 001 1 11344555443
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCC---CEEEEEEC---CCcEEEEEcCCCc-ccCCCCceeeeceeeec-
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---SKLVSVSD---DRSARIWEVRAEY-WKDSDSIEEVGSSVLYG- 306 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g---~~l~s~s~---Dg~v~iWd~~~~~-~~~~~~~~~i~~~~~~~- 306 (1088)
.+.-+.+.||...-..+....+. ..++.+.. .+.+++-++.... ...+...+.+. ....
T Consensus 188 -----------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd--v~fpp 254 (494)
T 1bpo_A 188 -----------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD--VFFPP 254 (494)
T ss_dssp -----------TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE--CCCCT
T ss_pred -----------ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee--eeCCc
Confidence 12222333443322222221100 11222222 2577888875431 10011111111 1111
Q ss_pred --cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 307 --HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 307 --h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
-..-..++..+ -+.++.-..-|.+.++|+ ++.++..-+-... +|...+......-++...+.|.|.--.++.
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 12334567776 467888899999999999 8888877665555 788877777666677778999888777754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.39 E-value=9.3 Score=43.85 Aligned_cols=239 Identities=11% Similarity=0.121 Sum_probs=124.4
Q ss_pred eEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeec-cCCCCcEEEEEE-------ecccCCCCEEEEEEcCC--
Q 001391 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCF-------LKVCNGNRSLAIGCSDN-- 157 (1088)
Q Consensus 89 ~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~I~~v~f-------~p~~~d~~~lasgs~Dg-- 157 (1088)
.++++.. .+.|++.|++... ...+... .........++| ++ +++.|+++...+
T Consensus 153 ~Lyv~~~~~~~i~~ID~~~~~-------------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~---~G~~lyvad~~~~~ 216 (496)
T 3kya_A 153 HLYICYDGHKAIQLIDLKNRM-------------LSSPLNINTIPTNRIRSIAFNKKIEGYAD---EAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEEETEEEEEEEETTTTE-------------EEEEECCTTSSCSBEEEEEECCCBTTTBC---TTCEEEEEECCCTT
T ss_pred EEEEEECCCCeEEEEECCCCE-------------EEEEEccCccccCCCcEEEEeecccccCC---CCCEEEEEeCCCCC
Confidence 4555544 4667777776422 1211111 112346899999 99 888666665443
Q ss_pred -----cEEEEEcCC-Cce--------EEEeccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEec-------cCcc
Q 001391 158 -----SIRVWDISN-SSI--------ILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVD-------WEHV 215 (1088)
Q Consensus 158 -----~V~iWd~~~-~~~--------~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~-------~~~~ 215 (1088)
.|.+.+... +.. +..+..+ ..+++ .+ ++.++++-...+.|..+|+. +...
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p-----~giav---dp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQC-----NGATI---HPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCC-----CCEEE---CTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCc-----eEEEE---cCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 255665333 121 2222211 12333 34 45666666677889999886 2221
Q ss_pred -ccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCcccCC
Q 001391 216 -APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 216 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
.+... + .......+.. .+.....+.|+|+|+|++ +++-+....|+.++......
T Consensus 289 ~tp~~~-------------------~-~~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~--- 344 (496)
T 3kya_A 289 WDPIVK-------------------N-NPNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK--- 344 (496)
T ss_dssp CCCBGG-------------------G-CTTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT---
T ss_pred eccccc-------------------c-cccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc---
Confidence 00000 0 0000112222 233456789999999995 45556677888866543210
Q ss_pred CCceeeeceeeec------c---------CcceE-EEEEC---------CCEEEEEeCCCcEEEEcCCCceeEEEccc--
Q 001391 294 DSIEEVGSSVLYG------H---------NARVW-DCCLT---------DSFIITAGEDCTCRVWGSDGKQLKMIKEH-- 346 (1088)
Q Consensus 294 ~~~~~i~~~~~~~------h---------~~~I~-~v~~~---------~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h-- 346 (1088)
....+..+.+ . -.... .++.. +.++++=..++.||.++.+|. +.++.+.
T Consensus 345 ---~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~ 420 (496)
T 3kya_A 345 ---EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGA 420 (496)
T ss_dssp ---EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCT
T ss_pred ---eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccc
Confidence 0000001111 0 01123 33332 345556567788999997774 4444321
Q ss_pred ------------C-C--------CCeEEEEEcCC-CCEEEEEeCCCCEEEEEcCC
Q 001391 347 ------------I-G--------RGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 347 ------------~-~--------~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~~~ 379 (1088)
. + ..-..|+++++ +.+.++=.....|+.+++++
T Consensus 421 ~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 421 STSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp THHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred cccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 0 0 13578999986 66666666678899988854
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=94.33 E-value=1.1 Score=48.23 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=77.9
Q ss_pred CEEEEEE---cCCCCEEEEEE-------------CCCcEEEEEcC---CCcccCCCCceeeeceeeecc-----------
Q 001391 258 SIFRIEW---SSCGSKLVSVS-------------DDRSARIWEVR---AEYWKDSDSIEEVGSSVLYGH----------- 307 (1088)
Q Consensus 258 ~V~~v~~---sp~g~~l~s~s-------------~Dg~v~iWd~~---~~~~~~~~~~~~i~~~~~~~h----------- 307 (1088)
.+.+|.| .|+++++++.. .++.|..+|+. +++. ...+ .+...
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-----~~~~---dL~~~~~~~~~~~g~~ 135 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP-----VWSV---NFEKVQDEFEKKAGKR 135 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-----SEEE---ESHHHHHHHHHHHSSC
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE-----EEEe---cCcccccccccccccc
Confidence 3578999 68877766533 26789999998 5432 1111 22111
Q ss_pred CcceEEEEEC--CCEEEEEeCC-CcEEEEcCCCceeEEEc-----ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 308 NARVWDCCLT--DSFIITAGED-CTCRVWGSDGKQLKMIK-----EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 308 ~~~I~~v~~~--~~~l~sg~~D-g~i~vWd~~~~~~~~~~-----~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.....+++.. ++..++++.- +.|...+.+|+.+..+. .....+.+.|+++|+|++|++....|.+..+|+.
T Consensus 136 ~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 136 PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1246788887 7888888888 88888888877555432 1112246799999999988888779999999986
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.33 E-value=2.7 Score=45.35 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=45.6
Q ss_pred CCCEEEEEEC------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC-----cEEEEcC
Q 001391 267 CGSKLVSVSD------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGS 335 (1088)
Q Consensus 267 ~g~~l~s~s~------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg-----~i~vWd~ 335 (1088)
+++.++.|+. -..+.+||+.+.+. +.+. .+........++.+.+.+++.|+.++ .+.+||.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW------KDLA--PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEET
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEE------EECC--CCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEEC
Confidence 5566666653 23588899888654 2221 11111111233445577777777543 4667887
Q ss_pred CCceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCC
Q 001391 336 DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 336 ~~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
....-..+.... .+.-.+++. -++.+++.||.+
T Consensus 230 ~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~ 263 (318)
T 2woz_A 230 KTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFA 263 (318)
T ss_dssp TTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred CCCeEEECCCCCCcccceEEEE-ECCEEEEECCee
Confidence 443333332111 111112222 245677777754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.06 Score=65.85 Aligned_cols=239 Identities=9% Similarity=-0.052 Sum_probs=117.6
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+......|++.++.+.+....+.... .+.+++|. +.++ .++.+ ...+.|+.+++..... ..
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~~~~~~--~p~gla~d-------~~~~---~Ly~sD~~~~~I~~~~~~g~~~-~~-- 442 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSLIPNLR--NVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG-VS-- 442 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECCSCCCT--TCCCCEEE-------TTTT---EEEECCTTTTSBEEEESCCCCC--C--
T ss_pred eeEEecCccceEEEeCCCCcceeeeccCc--ceEEEccc-------cccC---eEEEEecCCCeEEEEecCCCCC-Cc--
Confidence 34555555788888988766554444332 57899998 4431 33333 2367888888764110 00
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (1088)
.....+...-.....|++.+ ..+.+.++-...+.|.+.++........+.... .....+++ ++.+.
T Consensus 443 --------~~~~~i~~~~~~P~glavD~--~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~-~~P~giav---Dp~~g 508 (699)
T 1n7d_A 443 --------SYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG-SKPRAIVV---DPVHG 508 (699)
T ss_dssp --------CCCCBCCSCC--CCCEECCC--SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS-CCCCCEEC---CSSSS
T ss_pred --------ceEEEEeCCCCCcceEEEEe--eCCcEEEEeccCCeEEEEecCCCceEEEEeCCC-CCcceEEE---ccCCC
Confidence 00111111112345678775 033444444456789999887554333222111 11112222 23222
Q ss_pred EEEEEe-c-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCE-
Q 001391 195 RIASGT-I-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSK- 270 (1088)
Q Consensus 195 ~l~sg~-~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~- 270 (1088)
.|+... . .+.|.++++. +.....+ ...-....+|+|+|+++.
T Consensus 509 ~ly~td~~~~~~I~~~~~d----------------------------------G~~~~~l~~~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 509 FMYWTDWGTPAKIKKGGLN----------------------------------GVDIYSLVTENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp CCEECCCSSSCCEEBCCSS----------------------------------SCCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred cEEEcccCCCCeEEEEeCC----------------------------------CCCeeEEEeCCCCCccEEEEeccCCEE
Confidence 222222 1 2455555443 1111111 122345678999987654
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
+++-+..+.|..+++..... +.+. ...+.......+++. +.++++....+.|..++. +|+.+..+..
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~------~~~~--~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEEETTTTEEEEECSSSSCC------EEEC--CCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEEecCCCeEEEEccCCCce------EEEE--ecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 45555667899998865321 2221 111111222344444 455556666788888887 6766665543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=4.8 Score=42.84 Aligned_cols=64 Identities=11% Similarity=0.261 Sum_probs=34.6
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC-----cEEEEcCC
Q 001391 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg-----~i~vWd~~ 336 (1088)
+++.++.|+.+ ..+.+||+.+.+. ..+. .+.........+.+.+.+++.|+.++ .+.+||..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------~~~~--~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAW------RQVA--DMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCE------eeCC--CCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 55666666654 4688999887654 2221 11111112223444567777777654 36777764
Q ss_pred Cc
Q 001391 337 GK 338 (1088)
Q Consensus 337 ~~ 338 (1088)
..
T Consensus 276 ~~ 277 (302)
T 2xn4_A 276 TD 277 (302)
T ss_dssp TT
T ss_pred CC
Confidence 33
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=93.88 E-value=10 Score=42.34 Aligned_cols=215 Identities=11% Similarity=0.170 Sum_probs=131.8
Q ss_pred CCceEEecCCCceee------eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC-CeeEEEEeeeC---CcceEEEEe
Q 001391 4 KDLSEWRLDVGQYLG------EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFH---GIRLHGISC 73 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~------~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t-g~~~~~~~~~~---~~~V~~i~~ 73 (1088)
.+++|+|+.+..... +|.-=.|- . .+.|+--++..|+-|++.. ..++..|.-|. +..|..-..
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWi--s-----~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~ 158 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWI--S-----LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT 158 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEE--E-----TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEE
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEec--C-----CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEE
Confidence 568999999987332 23322333 2 3578888889999999974 35566665433 334555555
Q ss_pred cccccccCCCccceeeEEEEEC--------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 74 NFINCTEGSVSTRVTFEVALFG--------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~g--------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
+ ++.+ .++..| .|.+.+|..+. +.-+.+.||......+.+.-...
T Consensus 159 d-------~~~k----W~~l~GI~~~~~~v~G~mQLYS~er----------------~~sQ~ieGhaa~F~~~~~~g~~~ 211 (494)
T 1bpo_A 159 D-------AKQK----WLLLTGISAQQNRVVGAMQLYSVDR----------------KVSQPIEGHAASFAQFKMEGNAE 211 (494)
T ss_dssp C-------TTSS----EEEEEEEEEETTEEEEEEEEEESTT----------------CCEEEECCSEEEEEEEECTTCSS
T ss_pred C-------CCCC----eEEEEeecccCCcccceEEEeeccc----------------cccchheeeeeeeEEEecCCCCC
Confidence 5 6653 333322 36788898873 34566778877665555532101
Q ss_pred CCCEEEEEEcC---CcEEEEEcCCC--------ceEEEec-cCC--ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 146 GNRSLAIGCSD---NSIRVWDISNS--------SIILEVH-SPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~D---g~V~iWd~~~~--------~~~~~~~-~~~--~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
...+++-+... +.++|-++... +....+. .++ ...-.++.. ++.-..++.-+..|.|.++|++
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv---s~kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI---SEKHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE---ETTTTEEEEEETTSEEEEEETT
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe---cccCCEEEEEecCceEEEEecc
Confidence 11234444332 68888888543 1111221 222 111222322 3445577888899999999999
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
++..+..-+-....|+.-+......-++.....|.|.--.++..
T Consensus 289 ---------------------------------Tgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 289 ---------------------------------TGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ---------------------------------TCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ---------------------------------cceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 77777777767788888777777667777778888877776664
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.87 E-value=16 Score=44.74 Aligned_cols=183 Identities=9% Similarity=-0.057 Sum_probs=104.3
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
....|+..++........+.... ....+++. ..++.++.+-...+.|+.+++.....
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~--~~~gl~~d--~~~~~lY~sD~~~~~I~~~~l~g~~~------------------- 458 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLR--NVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHG------------------- 458 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCS--SEEEEEEE--TTTTEEEEEETTTTEEEEEEC------------------------
T ss_pred cccceeEeeccCCcceeeecCCC--ceEEEeec--ccCCeeEEeeccceeEEEEeccCCCC-------------------
Confidence 34568887876655433333222 23344442 12344555555567788777761000
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~ 313 (1088)
.......+........+|++.+.++.| ++-...+.|.+.++..... .. ...........
T Consensus 459 ----------~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------~~----l~~~~l~~P~g 518 (791)
T 3m0c_C 459 ----------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KT----LFRENGSKPRA 518 (791)
T ss_dssp -------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EE----EEECTTCCEEE
T ss_pred ----------CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------EE----EEeCCCCCcce
Confidence 011222233344567789999877554 5556678899999876422 11 22223345778
Q ss_pred EEEC--CCEEEEEe-C-CCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEcCCC
Q 001391 314 CCLT--DSFIITAG-E-DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAF 380 (1088)
Q Consensus 314 v~~~--~~~l~sg~-~-Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~~~ 380 (1088)
+++. ...|+... . .+.|.+.+++|.....+..........|++++.+..|+.+. ..+.|...++.+.
T Consensus 519 IaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 519 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 8886 34454443 3 37888888888766665443323578999998777666654 4567888887653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.84 E-value=4.9 Score=43.15 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCEEEEEECCC-----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC
Q 001391 267 CGSKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED 327 (1088)
Q Consensus 267 ~g~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D 327 (1088)
+++.++.|+.++ .+.+||+.+.+. ..+. .+.........+.+.+.+++.|+.+
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKW------APFE--AFPQERSSLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeE------EECC--CCCCcccceeEEEECCEEEEECCcc
Confidence 556677776544 578888887644 2222 1111111223444556777777764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=7.1 Score=41.43 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=33.7
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC-----cEEEEcCC
Q 001391 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg-----~i~vWd~~ 336 (1088)
+++.++.|+.+ ..+.+||+.+.+. ..+. .+.........+.+.+.+++.|+.++ .+.+||..
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSW------TTVT--SMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcE------EECC--CCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence 45666666653 4688999987654 2222 11111112233444566777777653 45667763
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.36 E-value=4.4 Score=43.44 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=32.7
Q ss_pred CCCEEEEEEcC-----CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC-----CeEEEEEec
Q 001391 146 GNRSLAIGCSD-----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~D-----g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d-----g~I~vwd~~ 211 (1088)
++.+++.|+.+ ..+.+||..+.+....-..+......++... ++.+++.|+.+ ..+.+||+.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL----NRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE----CCEEEEEeCCCCCCcCceEEEEeCC
Confidence 56677777643 4688899887654432222221111122221 45566666544 447777766
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=93.33 E-value=10 Score=40.76 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=89.5
Q ss_pred EEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEE-Eee-----eCCcceEEEEe---cccccccCCCccceeeE
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRP-FQV-----FHGIRLHGISC---NFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~-~~~-----~~~~~V~~i~~---s~~~~~~~~d~~~~~~~ 90 (1088)
+.+|. +. +..+..++ .++|..||...+..... +.. .....+.+|.+ . |++ ++
T Consensus 17 ~~~wd--~~----~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D-------~~g----rL 79 (334)
T 2p9w_A 17 DTIYD--RT----RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHD-------NSK----RL 79 (334)
T ss_dssp CEEEE--TT----TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSS-------SCC----EE
T ss_pred CccCc--CC----CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccC-------CCC----cE
Confidence 56777 54 44555555 69999999986644333 211 01123678888 4 555 56
Q ss_pred EEEEC--------------CCEEEEEEec---cCCCCCCCCCCccccccceeeeccCC-----------CCcEEEEEEec
Q 001391 91 VALFG--------------EKRVKLFELN---FELSPNSQYQPETCVNLSLVQSLPRL-----------SHWVFDVCFLK 142 (1088)
Q Consensus 91 la~~g--------------d~~v~iw~l~---~~~~~~~~~~~~~~~~~~~~~~l~~h-----------~~~I~~v~f~p 142 (1088)
+++.. ++.|..+|+. +.. ......|... .....++++.+
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-------------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~ 146 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK-------------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR 146 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC-------------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECT
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCC-------------EEEEecCccccccccccccccccCCceeEECC
Confidence 66433 5778899987 332 1111222111 13488999999
Q ss_pred ccCCCCEEEEEEcC-CcEEEEEcCCCceEEE-eccC---CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 143 VCNGNRSLAIGCSD-NSIRVWDISNSSIILE-VHSP---ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 143 ~~~d~~~lasgs~D-g~V~iWd~~~~~~~~~-~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+|+.-++++.- +.|...+........- +..+ ...-...+.+ .|++..|++....|.|..+|+.
T Consensus 147 ---~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~---~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 147 ---DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITF---DPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ---TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEE---ETTTTEEEEESSSSSEEEEECS
T ss_pred ---CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEE---eCCCCEEEEEcCCCeEEEEcCC
Confidence 99988888877 7766666654322211 1111 1111223333 3677777666559999999987
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.99 E-value=11 Score=40.27 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=32.9
Q ss_pred CCCEEEEEEcC-------CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec------CCeEEEEEec
Q 001391 146 GNRSLAIGCSD-------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~D-------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~------dg~I~vwd~~ 211 (1088)
++.+++.|+.+ ..+.+||..+.+....-..+......++.. .++.+++.|+. ...+.+||+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS----HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE----ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE----ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56777777754 347888888765543322222111112222 24555555553 2347777776
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.95 E-value=13 Score=40.76 Aligned_cols=72 Identities=11% Similarity=-0.010 Sum_probs=45.2
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec---cCCCCcEEEEEEecc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL---PRLSHWVFDVCFLKV 143 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l---~~h~~~I~~v~f~p~ 143 (1088)
.-.+|+|. |+| .++++-.++.|.+++ . .. .+.+..+ ..-......|+|+|
T Consensus 32 ~P~~ia~~-------pdG----~l~V~e~~g~I~~i~-~-g~-------------~~~~~~~~v~~~g~~~p~gia~~p- 84 (352)
T 2ism_A 32 VPWALAFL-------PDG----GMLIAERPGRIRLFR-E-GR-------------LSTYAELSVYHRGESGLLGLALHP- 84 (352)
T ss_dssp CEEEEEEC-------TTS----CEEEEETTTEEEEEE-T-TE-------------EEEEEECCCCCSTTCSEEEEEECT-
T ss_pred CceEEEEc-------CCC----eEEEEeCCCeEEEEE-C-CC-------------ccEeecceEeecCCCCceeEEECC-
Confidence 36789998 887 677776678888887 2 11 1222211 12235689999999
Q ss_pred cCC---CCEEEEEEc-C-----CcEEEEEcCCC
Q 001391 144 CNG---NRSLAIGCS-D-----NSIRVWDISNS 167 (1088)
Q Consensus 144 ~~d---~~~lasgs~-D-----g~V~iWd~~~~ 167 (1088)
+ +..|+++.. . +.|..++...+
T Consensus 85 --df~~~g~lYv~~~~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 85 --RFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp --TTTTSCEEEEEEEECTTSSEEEEEEEEECSS
T ss_pred --CCCCCCEEEEEEecCCCCCccEEEEEEeCCC
Confidence 7 555555433 2 56888887643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=92.78 E-value=2.8 Score=44.94 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC-----CcEEEEcCC
Q 001391 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D-----g~i~vWd~~ 336 (1088)
+++.++.|+.+ ..+..||+.+.+. ..+. .+.........+.+.+.+++.|+.+ ..+.+||+.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEW------RMIT--AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE------EECC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeE------eeCC--CCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence 45566666543 4588899887644 2221 1111111223344456777777765 458889985
Q ss_pred CceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCCC-----CEEEEEcC
Q 001391 337 GKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQ 378 (1088)
Q Consensus 337 ~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg-----~I~iwd~~ 378 (1088)
...-..+.... .+.-.+++.. ++++++.||.++ .+.+||+.
T Consensus 240 ~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 240 TETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCC
Confidence 44433332211 1111122222 566777777553 35566654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=21 Score=42.47 Aligned_cols=232 Identities=12% Similarity=-0.025 Sum_probs=129.2
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+.+....|+..|+.+......+....-..+.+++|. +..+ .+..+ ..++.|..++++...
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d-------~~~~---~lywtD~~~~~I~r~~~~g~~------ 70 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFD-------VTDN---RIYWTDISLKTISRAFMNGSA------ 70 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEE-------TTTT---EEEEEETTTTEEEEEETTSCS------
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEE-------CCCC---EEEEEECCCCeEEEEECCCCC------
Confidence 577777889999999987654333332222358899998 4331 44444 347888888876321
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-C
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~ 192 (1088)
.+.+ +..-......+++.+ .+..| ++-...+.|.+.++........+... ......+++ +| +
T Consensus 71 -------~~~v--~~~g~~~P~GlAvD~---~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~-l~~P~~iav---dp~~ 134 (628)
T 4a0p_A 71 -------LEHV--VEFGLDYPEGMAVDW---LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD-LDSPRALAL---DPAE 134 (628)
T ss_dssp -------CEEE--ECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSTTCEEEECSS-CCCEEEEEE---ETTT
T ss_pred -------cEEE--EeCCCCCcceEEEEe---CCCEEEEEECCCCEEEEEecCCCcEEEEEeCC-CCCcccEEE---ccCC
Confidence 1111 111124567899987 55544 44455678999998654332222111 111234444 23 3
Q ss_pred CcEEEEE-ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l~sg-~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+.+..+- +..+.|...++. +.....+...-....+|+++++++.|
T Consensus 135 G~lY~tD~g~~~~I~r~~~d----------------------------------G~~~~~l~~~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 135 GFMYWTEWGGKPKIDRAAMD----------------------------------GSERTTLVPNVGRANGLTIDYAKRRL 180 (628)
T ss_dssp TEEEEEECSSSCEEEEEETT----------------------------------SCSCEEEECSCSSEEEEEEETTTTEE
T ss_pred CeEEEeCCCCCCEEEEEeCC----------------------------------CCceEEEECCCCCcceEEEccccCEE
Confidence 4333332 224555555554 11122222345678999999987766
Q ss_pred EEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-CEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 272 ~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
..+ ...+.|...++..... +. +.........+++.+ .++++-...+.|...|. +|+....+.
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~------~v-----~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR------EV-----IADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC------EE-----EEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEECCCCEEEEEcCCCCce------EE-----eeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 554 4567888888866321 21 222223345677664 44455556788888886 665544443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.63 E-value=8.5 Score=42.05 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=21.4
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg 328 (1088)
.+.+||+.+.+. +.+. .+......-.++.+.+.+++.|+.++
T Consensus 286 ~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKW------DKSG--ELSQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---C------EEEE--ECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred eEEEEecCCCce------eeCC--CCCCCcccceeEEeCCEEEEEeeeCC
Confidence 477889887654 2232 22211122234455678888888654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.10 E-value=20 Score=39.10 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.3
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
..-+.++|.| +|++++ +..++.|++++
T Consensus 31 ~~P~~ia~~p---dG~l~V-~e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLP---DGGMLI-AERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECT---TSCEEE-EETTTEEEEEE
T ss_pred CCceEEEEcC---CCeEEE-EeCCCeEEEEE
Confidence 3568999999 998554 55679999998
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=90.88 E-value=12 Score=48.25 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=72.8
Q ss_pred CCCceEEecCCCce--eeeeEE--EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccc
Q 001391 3 KKDLSEWRLDVGQY--LGEISA--LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 3 d~~i~iWdl~~g~~--~~~V~~--v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~ 78 (1088)
...|.|-|+..+.. ..||.| .-.+ |. .+.||.-.+.+|+|+|+++.+.+..+.-.+ .|.--.|-
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~AdsAIMn--P~----~~iiALrag~~lQiFnl~~k~klks~~~~e--~VvfWkWi---- 114 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWI---- 114 (1630)
T ss_pred CceEEEEECCCCCCcccccccchhhccC--CC----cceEEEecCCeEEEeehHHhhhhcccccCC--CceEEEec----
Confidence 34577777777552 223332 2234 65 677777778999999999988888877544 35555564
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC----CCcEEEEEEecccCCCCEEEEEE
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h----~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+ ..|+.-.+..|.-|++.... .+.+.+..| ...|..-..++ +.++++..|
T Consensus 115 ---s~-----~~l~lVT~~aVyHW~~~~~s--------------~P~k~fdR~~~L~~~QIinY~~d~---~~kW~~l~g 169 (1630)
T 1xi4_A 115 ---SL-----NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTG 169 (1630)
T ss_pred ---CC-----CeeEEEcCCeEEEeccCCCC--------------ccHHHHhcchhcccCeeEEeeeCC---CCCeEEEEe
Confidence 44 67888888999999997422 122222222 34566666666 777665543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.79 E-value=27 Score=39.99 Aligned_cols=161 Identities=12% Similarity=0.139 Sum_probs=88.5
Q ss_pred eEEEEEeccC-CCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeC--CcceEEEEe-------cccccccCCCcccee
Q 001391 20 ISALCFVHLP-SHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFH--GIRLHGISC-------NFINCTEGSVSTRVT 88 (1088)
Q Consensus 20 V~~v~fs~~p-d~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~--~~~V~~i~~-------s~~~~~~~~d~~~~~ 88 (1088)
-..|+|+ | + .+.+.++-.+ ..|++.|.+++.+........ -.+..+|+| + +++.
T Consensus 141 p~~la~d--p~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-------~~G~--- 205 (496)
T 3kya_A 141 NGRLAFD--PLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-------DEAE--- 205 (496)
T ss_dssp EEEEEEE--TTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-------CTTC---
T ss_pred CCEEEEc--cCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-------CCCC---
Confidence 5689999 8 3 1334444333 789999998877655444322 235889999 7 6762
Q ss_pred eEEEEEC-C-C---E--EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEE
Q 001391 89 FEVALFG-E-K---R--VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIR 160 (1088)
Q Consensus 89 ~~la~~g-d-~---~--v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~ 160 (1088)
.++++.. + + . |.+++..... .+... .....+..+ .....++++| ++. ++++-..++.|.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G----~~~~~--~~~~~v~~~----~~p~giavdp---~~g~LYvtd~~~g~V~ 272 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADG----TFDDR--SDIQLIAAY----KQCNGATIHP---INGELYFNSYEKGQVF 272 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTS----CCSTT--SCEEEEEEE----SCCCCEEECT---TTCCEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCC----ceeec--ccceeeccC----CCceEEEEcC---CCCeEEEEECCCCEEE
Confidence 3444433 3 1 3 4444422211 11100 000122222 2345778888 555 455556778899
Q ss_pred EEEcC-------CCce-----------EEE-eccCCceeEEEEeeecCCCCCcE-EEEEecCCeEEEEEec
Q 001391 161 VWDIS-------NSSI-----------ILE-VHSPERCLLYSMKLWGDNLEALR-IASGTIYNEIIVWKVD 211 (1088)
Q Consensus 161 iWd~~-------~~~~-----------~~~-~~~~~~~~~~s~~~~~~s~~~~~-l~sg~~dg~I~vwd~~ 211 (1088)
.+|+. ++.. ... +..+.....+.+++ ++++.. .++-+..+.|+.++..
T Consensus 273 r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~---~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 273 RLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFI---HPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEE---CTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecccccccccCceeecccccccccccceeEecCCCCCceEEEE---cCCCCEEEEEeCCCCEEEEEecC
Confidence 99997 5543 112 22222233455665 678874 4555667888887765
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=90.49 E-value=8.7 Score=42.77 Aligned_cols=106 Identities=10% Similarity=0.102 Sum_probs=72.3
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC--CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
..+.+..++.||.-++.... . .+.+. ++. --+.|..+..+| +|++||..+ +..|.|-.+..
T Consensus 33 t~i~~a~~n~iR~~~i~~~~----~--------Yk~L~-~~~~i~f~~i~qlvlSp---sG~lLAl~g-~~~V~Vv~LP~ 95 (452)
T 3pbp_A 33 TRIVFIQDNIIRWYNVLTDS----L--------YHSLN-FSRHLVLDDTFHVISST---SGDLLCLFN-DNEIFVMEVPW 95 (452)
T ss_dssp TEEEEEETTEEEEEETTTCS----S--------CEEEE-CTTTCCCCTTCEEEECT---TSSEEEEEC-SSEEEEEECCT
T ss_pred CEEEEEECCEEEEEECCCCC----c--------ceEEe-cCcccccCceeEEEECC---CCCEEEEec-CCeEEEEEecC
Confidence 45555666888888877422 1 22222 221 123578899999 999999886 56899988873
Q ss_pred Cc------------eEEEeccC-----CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 167 SS------------IILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 167 ~~------------~~~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+. ..+.+.-. ....+..+.||+.+..+..|++-+.|+.|++||+.
T Consensus 96 ~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 96 GYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp TCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred ccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 32 11222211 13457788899888889999999999999999998
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=90.30 E-value=0.68 Score=56.48 Aligned_cols=194 Identities=8% Similarity=-0.106 Sum_probs=101.5
Q ss_pred CcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCC----CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISN----SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~----~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~v 207 (1088)
..+..++|.+ .+..|+.. ...+.|+.+++.. ......+.... .....+++. ...+.++++-...+.|.+
T Consensus 406 ~~p~gla~d~---~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~-~~P~glavD--~~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 406 RNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QAPDGLAVD--WIHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp TTCCCCEEET---TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---CCCEECC--CSSSBCEECCTTTSCEEE
T ss_pred cceEEEcccc---ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC-CCcceEEEE--eeCCcEEEEeccCCeEEE
Confidence 4567899988 66666655 3467899999875 11111111000 001122221 123444444445677777
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEEEEE-CC-CcEEEEE
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVS-DD-RSARIWE 284 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~s~s-~D-g~v~iWd 284 (1088)
.++. .. .+..+ .........|+++|.+.+|+.+. .. +.|...+
T Consensus 480 ~d~d---------------------------------g~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 480 ADTK---------------------------------GV-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp EBSS---------------------------------SC-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred EecC---------------------------------CC-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 7765 11 11222 22234467888998765554433 22 5676666
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccC--CCCeEEEEEcCC
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHI--GRGIWRCLYDSL 359 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~--~~~V~~l~~~~d 359 (1088)
+..... +.+ ....-.....++++ +.++++-...+.|.+++++|.....+.... ......|++..+
T Consensus 526 ~dG~~~------~~l----~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~ 595 (699)
T 1n7d_A 526 LNGVDI------YSL----VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 595 (699)
T ss_dssp SSSCCC------CEE----SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT
T ss_pred CCCCCe------eEE----EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC
Confidence 654211 111 11112334568886 345556667788999999765555543211 112345666554
Q ss_pred CCEEEEEeCCCCEEEEEc
Q 001391 360 SSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~ 377 (1088)
.++++....+.|..++.
T Consensus 596 -~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 596 -KVFWTDIINEAIFSANR 612 (699)
T ss_dssp -EEEEECSTTTCEEEEET
T ss_pred -EEEEEeCCCCeEEEEEc
Confidence 45555556678888876
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=88.52 E-value=46 Score=39.45 Aligned_cols=225 Identities=8% Similarity=-0.117 Sum_probs=118.4
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~ 167 (1088)
.++.-...+.|+..++.... .+ ...+...-.....++|++ .+..|+.+. ..+.|..+++...
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~-------------~~-~~~~~~~~~~~~~ld~~~---~~~~ly~sD~~~~~I~r~~~~g~ 72 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGK-------------EN-ATIVVGGLEDAAAVDFVF---SHGLIYWSDVSEEAIKRTEFNKT 72 (619)
T ss_dssp CCEEEECSSBEEEECCC-----------------------CBCCSCEEEEEEET---TTTEEEEEETTTTEEEEEEC---
T ss_pred ceEEEeccccEEEEeCCCCc-------------ce-EEEEEcCCCceEEEEEEe---CCCEEEEEECCCCeEEEEEccCC
Confidence 35555667888888887421 01 111112234578999998 666666554 4678888888755
Q ss_pred ce-EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 168 SI-ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 168 ~~-~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
.. ...+.... .....+++-+ ..+.+..+-...+.|.+.++. ..
T Consensus 73 ~~~~~v~~~~~-~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~d---------------------------------G~ 116 (619)
T 3s94_A 73 ESVQNVVVSGL-LSPDGLACDW--LGEKLYWTDSETNRIEVSNLD---------------------------------GS 116 (619)
T ss_dssp --CEEEECSSC-SCEEEEEEET--TTTEEEEEETTTTEEEEEETT---------------------------------SC
T ss_pred CceEEEEeCCC-CCcCeEEEEe--cCCEEEEEeCCCCEEEEEECC---------------------------------CC
Confidence 32 22222221 1233444411 234555566667888888876 11
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~ 322 (1088)
.....+...-....+|++.|.+.+|..+.. .+.|...++..... +. .....-.....+++. +..|+
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------~~----l~~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------FI----IINSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSSEEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------EE----EEeCCCCCCcEEEEEccCCEEE
Confidence 111122234456788999997666655443 34565556554221 11 111223456778886 34444
Q ss_pred -EEeCCCcEEEEcCCCceeEEEcc-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 323 -TAGEDCTCRVWGSDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 323 -sg~~Dg~i~vWd~~~~~~~~~~~-h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+=...+.|...+++|.....+.. ... ...++++..+ .+.++-...+.|...|..
T Consensus 187 ~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEeCCCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 44566789999997755444322 112 2346777665 444554567788888873
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=88.10 E-value=34 Score=37.35 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.0
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
...+.++|.| +++++ ++..++.|++++. +++
T Consensus 29 ~~P~~ia~~p---dG~l~-V~e~~g~I~~~d~-~G~ 59 (354)
T 3a9g_A 29 EVPWSIAPLG---GGRYL-VTERPGRLVLISP-SGK 59 (354)
T ss_dssp SCEEEEEEEE---TTEEE-EEETTTEEEEECS-SCE
T ss_pred CCCeEEEEcC---CCeEE-EEeCCCEEEEEeC-CCc
Confidence 4578999999 98855 4566799999873 444
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=86.68 E-value=7.8 Score=39.02 Aligned_cols=163 Identities=9% Similarity=-0.065 Sum_probs=77.4
Q ss_pred ceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEee--eecCC-cceEEEecCCCCCCCcCCCCCeEEEecCCCCEE
Q 001391 421 YVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL--QVSEG-MPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT 497 (1088)
Q Consensus 421 ~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~--~~~~~-~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~ 497 (1088)
.++.++|.|++.+++. .+|.++..+........|.... -+..+ ....++-+.+ ++.+.++ .||.|+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~--------~G~LYav--~dG~iy 110 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP--------NGYLYAV--SKDKLY 110 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT--------TSCEEEE--ETTEEE
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC--------CCCEEEe--CCCEEE
Confidence 4779999999999998 8999998765554444442210 00000 0012333333 3466666 558776
Q ss_pred EEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeecc
Q 001391 498 IVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577 (1088)
Q Consensus 498 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~ 577 (1088)
-++-.+.....-..-........=... ....+.|+|.+.+.. |+.++-+..+......-. ........
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~--~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl--------~~~~~~g~ 178 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGF--KFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWL--------ARATKIGQ 178 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGE--EEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHH--------HHCEEEES
T ss_pred EeCCCcCCCCceeccccEeccCCCCce--EEEEECCCceEEEEe--CCcEEecCCCCCCCcccc--------cccceecc
Confidence 554322211110000000000000011 234578898887776 777554333311110000 01111111
Q ss_pred ccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 578 ~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
..-..-.-+.|++++.+.++- +| ++|...
T Consensus 179 ~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 179 GGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE--TT--EEEEES
T ss_pred CCcceEEEEEECCCCcEEEEe--CC--eEEecC
Confidence 122233446688999888776 66 455543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.69 E-value=15 Score=40.08 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=17.2
Q ss_pred CCCEEEEEEc-C---------CcEEEEEcCCCceE
Q 001391 146 GNRSLAIGCS-D---------NSIRVWDISNSSII 170 (1088)
Q Consensus 146 d~~~lasgs~-D---------g~V~iWd~~~~~~~ 170 (1088)
++.+++.||. + +.+.+||..+.+..
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 5667777765 2 46889998876544
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=84.89 E-value=45 Score=35.63 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=111.6
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEE
Q 001391 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (1088)
Q Consensus 357 ~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~ 436 (1088)
-++..++++.+.+|.|+--.+..-..+...+. ....+ .+...+..+..+..+....+++.
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~----------g~~~~----------~lke~D~l~~~~~~~~~~~ll~~ 64 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGK----------GLSSF----------DLNDGDEIVIALCVNTHDYLFMI 64 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCC----------CEECC----------CCCTTCCEEEEEEEETTCEEEEE
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCC----------Cceec----------ccCCCCEEEEEEEECCCCEEEEE
Confidence 35667889999999999877632110000000 00000 01111222333334445689999
Q ss_pred ecCCeEEEEEeccCCcceeEE-------eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc-
Q 001391 437 TNHGYLYHTKLCDMDSVNWNK-------ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP- 508 (1088)
Q Consensus 437 t~~g~i~~~~~~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~- 508 (1088)
|+.|.++.++..+.....|.. .+....+..+..+..... ......++..+..|.++...+..-....
T Consensus 65 T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~-----~~~~~~ll~~T~~G~~kr~~l~~~~~~r~ 139 (312)
T 1suu_A 65 SNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKD-----LTDDAYLLLTTASGKIARFESTDFKAVKS 139 (312)
T ss_dssp ETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESC-----CCTTCEEEEEETTSEEEEEEGGGGCC---
T ss_pred ECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEecc-----CCCCCEEEEEeCCCeEEEEEHHHhhccCC
Confidence 999999998877654433221 122223444555433221 0134678888999999887765422111
Q ss_pred ceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEe
Q 001391 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (1088)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~ 588 (1088)
...... .......+..+..+ . ++..++..+.+|....+.+..-...... . .-...+...-...|.++..
T Consensus 140 ~G~~~i--~L~~~d~lv~~~~~-~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~-----~--~Gv~~i~L~~~d~vv~~~~ 208 (312)
T 1suu_A 140 RGVIVI--KLNDKDFVTSAEIV-F-KDEKVICLSKKGSAFIFNSRDVRLTNRG-----T--QGVCGMKLKEGDLFVKVLS 208 (312)
T ss_dssp -CEECB--CCCTTCCEEEEEEE-C-TTCEEEEEETTSEEEEEEGGGSCBCCTT-----B--CCEECCCCCTTCCEEEEEE
T ss_pred CcEEEE--ecCCCCEEEEEEEe-C-CCCEEEEEeCCCcEEEEEHHHccccCCC-----C--CCeEeEEeCCCCEEEEEEE
Confidence 111111 11223345554332 3 3445666778898888887642211100 0 0001111122455666665
Q ss_pred eeCCCEEEEEcCCCcEEEEeCCc
Q 001391 589 SFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 589 spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
..++..|++.+..|..+.++++.
T Consensus 209 v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 209 VKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CTTCSEEEEEETTSEEEEEEGGG
T ss_pred ECCCCeEEEEECCCceEEEEHHH
Confidence 55667788999999999998875
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=83.97 E-value=53 Score=35.72 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=22.4
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~ 165 (1088)
...+.|+|.| +++.|+++...|.|++++..
T Consensus 18 ~~P~~i~~~p---dG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLP---DNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECS---TTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcC---CCCEEEEEeCCceEEEEeCC
Confidence 3568999999 99834455568999999853
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=26 Score=35.30 Aligned_cols=155 Identities=8% Similarity=-0.017 Sum_probs=79.2
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee---ccCcceEEEEEC-CCEEEEEeCCCcEEE
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY---GHNARVWDCCLT-DSFIITAGEDCTCRV 332 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~---~h~~~I~~v~~~-~~~l~sg~~Dg~i~v 332 (1088)
..+..++|+|+|.+.+. .++.+.-.+..+... ...+...+.. +... ..++.|. +..|... .||.|+-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN-----DNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT-----CCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCc-----ccccccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEE
Confidence 36779999999986666 566554444333211 1111100111 1111 3567777 3344444 6799988
Q ss_pred EcC--CCce-----eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 333 WGS--DGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 333 Wd~--~~~~-----~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
++. ++.. -..+....-+.+..|.+.|+|.+-+.. |+.+.-+......- . .+..
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~------~---~wl~--------- 171 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQ------D---NWLA--------- 171 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTT------C---CHHH---------
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCC------c---cccc---------
Confidence 886 2221 112211111258899999999866655 77643322211100 0 0000
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
.....-...-...+.+.|.+++.+++.. +|.++..
T Consensus 172 ----~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y~~ 206 (236)
T 1tl2_A 172 ----RATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFYED 206 (236)
T ss_dssp ----HCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred ----ccceeccCCcceEEEEEECCCCcEEEEe-CCeEEec
Confidence 0000001112245667899999888888 8888753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1088 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.5 bits (163), Expect = 2e-12
Identities = 50/331 (15%), Positives = 102/331 (30%), Gaps = 47/331 (14%)
Query: 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77
++ + F + S + S A + + ++D E G R + +
Sbjct: 18 SPVTRVIFHPVFSVMVS-----ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 78 CTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137
+ G + ++ + + P +S + V
Sbjct: 73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132
Query: 138 VCFLKVCNGNRS-------------LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSM 184
+K G+R +A +D ++RVW ++ E+ + +
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV-ECI 191
Query: 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244
++ + + G S D K K+ D
Sbjct: 192 SWAPES--------------SYSSISEATGSETKKSGKPGPFLLSGSRD-KTIKMWDVS- 235
Query: 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304
T + L LVGH+ + + + S G ++S +DD++ R+W D + + L
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW--------DYKNKRCM--KTL 285
Query: 305 YGHNARVWDCCL--TDSFIITAGEDCTCRVW 333
H V T +++T D T +VW
Sbjct: 286 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 52/305 (17%), Positives = 94/305 (30%), Gaps = 41/305 (13%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309
+ L GH + R+ + S +VS S+D + ++W+ ++ L GH
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----------RTLKGHTD 60
Query: 310 RVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL--SSLLVTAG 367
V D S + A + D + + I+ G + +V+A
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427
D IK+ + Q + K F G E + PN + + S + VR +
Sbjct: 121 RDKTIKMWEVQ--------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
Query: 428 TSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487
+++ H ++ +S + +SE P G D
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSS----ISEATGSETKKSGKPGPFLLSGSRDKT 228
Query: 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547
+ DV T T R + G +FI + L
Sbjct: 229 I------------KMWDVSTGMCLMTLVGHDNWVRGV-----LFHSGGKFILSCADDKTL 271
Query: 548 KLWQL 552
++W
Sbjct: 272 RVWDY 276
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.8 bits (156), Expect = 1e-11
Identities = 36/203 (17%), Positives = 59/203 (29%), Gaps = 47/203 (23%)
Query: 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192
DV L + R G D S ++WD+ E
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD------------- 228
Query: 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252
+ + + P GN S D C + + +
Sbjct: 229 --------------INAICF--------FPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312
I + +S G L++ DD + +W D+ + G VL GH+ RV
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVW--------DALKADRAG--VLAGHDNRVS 316
Query: 313 DCCLTD--SFIITAGEDCTCRVW 333
+TD + T D ++W
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.8 bits (151), Expect = 7e-11
Identities = 38/257 (14%), Positives = 76/257 (29%), Gaps = 15/257 (5%)
Query: 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSM 184
V ++P S WV + N + + + + + + L
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG------SSSDFKCFK 238
+ DN T I S + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298
L D + + GHE I I + G+ + SDD + R++++RA+ + S +
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 299 VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYD 357
+ + + ++ +D C VW + ++ H R +
Sbjct: 269 IICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVT 321
Query: 358 SLSSLLVTAGFDSAIKV 374
+ T +DS +K+
Sbjct: 322 DDGMAVATGSWDSFLKI 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.5 bits (150), Expect = 1e-10
Identities = 39/273 (14%), Positives = 85/273 (31%), Gaps = 19/273 (6%)
Query: 125 VQSLPRLSHWVFDVCFLKVCN----GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
S P ++ VCF G I D R + +++S +
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF--- 237
+ G +RI + ++ ++ +G + S D
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 238 --KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295
+ GH+ S++ + ++ G +VS S DRS ++W ++ K
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 296 IEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGR- 349
G+ + + + + D +I++ +D W G L M++ H
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 353
Query: 350 ----GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
++ T D ++ +++
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 41/274 (14%)
Query: 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALR 195
VC +K N LA GC + + +V+ +S+ S++ L S ++ L
Sbjct: 65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 196 I------------ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243
I A+G I +W ++ + +L E + +
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 244 HTAVNLFRL---------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294
V ++ L +G G + + S DR+ R+W+ + +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243
Query: 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK----------- 341
E + GH V+ T +++ D + ++W K
Sbjct: 244 DSE---NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 342 -MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
+ + +++ D +
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 19/132 (14%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR------ 286
+ + + V L + + H + +++S+ G L + + + +++ V
Sbjct: 39 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVA 97
Query: 287 --AEYWKDSDSIEEVGSSVLYGHNARVWDCCL--TDSFIITAGEDCTCRVWGSDGKQLKM 342
++ + E + +S + + C F+ T ED R+W + +++ M
Sbjct: 98 RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 157
Query: 343 IKEHIGRGIWRC 354
I + + I+
Sbjct: 158 ILQGHEQDIYSL 169
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 20/233 (8%)
Query: 145 NGNRSLAIGCSDNSIRVWDISNSSII--LEVHS-PERCLLYSMKLWGDNLEALRIASGTI 201
GNR + G DN+++VW + L H+ + +
Sbjct: 26 CGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 84
Query: 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR 261
+ + S D + +++
Sbjct: 85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL----MGHVAAV 140
Query: 262 IEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFI 321
G ++VS + D ++W+ E L GH RV+ +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCL----------HTLQGHTNRVYSLQFDGIHV 190
Query: 322 ITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
++ D + RVW D + I G + ++LV+ DS +K+
Sbjct: 191 VSGSLDTSIRVW--DVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 8e-06
Identities = 60/368 (16%), Positives = 108/368 (29%), Gaps = 47/368 (12%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
L GH+ + CG+++VS SDD + ++W L GH V
Sbjct: 12 LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCL----------RTLVGHTGGV 60
Query: 312 WDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371
W + D+ II+ D T +VW ++ + + V+ D+
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV--VSGSRDAT 118
Query: 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431
++V + + A + + + + +++ D E CLH
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD--PETETCLHTLQGH 176
Query: 432 TLYIATNHGYLYHTKLCDMDS------VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485
T + + H +D+ V + G + + D+
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--------DN 228
Query: 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKG 545
+ G+ + I + L C F+ T+ G
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ--------SAVTCLQFNKNFVITSSDDG 280
Query: 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605
+KLW L + LV S G + + AS V G G
Sbjct: 281 TVKLWDL----------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 606 LFPLLRDL 613
L+ D
Sbjct: 331 TKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 27/210 (12%)
Query: 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192
V R + G D ++VWD + + + ++ +++ +
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG------HTNRVYSLQFD 186
Query: 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF-----------KCFKLQD 241
+ + SG++ I VW V+ + +++ G+ + S + K+ D
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGN---CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD 243
Query: 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301
+ ++ + +++ SDD + ++W+++ + I + +
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-----TGEFIRNLVT 298
Query: 302 SVLYGHNARVWDCCLTDS--FIITAGEDCT 329
G VW +++ + T
Sbjct: 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 303 VLYGHNARVWDCC-LTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIG 348
VL GH+ V C + I++ +D T +VW GK L+ + H G
Sbjct: 11 VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 41/256 (16%), Positives = 80/256 (31%), Gaps = 19/256 (7%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPER 178
+L + S V+ + + + + + G DN+I++WD + L H+
Sbjct: 4 SLQRIHCRSETSKGVYCLQY----DDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58
Query: 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238
L + + N + H +L+ N + S +
Sbjct: 59 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118
Query: 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298
+ D R V +VS S DR+ ++W + +
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT----- 173
Query: 299 VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358
L GH + D +++ D T R+W D + ++ G
Sbjct: 174 -----LNGHKRGIACLQYRDRLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRF 226
Query: 359 LSSLLVTAGFDSAIKV 374
+ +V+ +D IKV
Sbjct: 227 DNKRIVSGAYDGKIKV 242
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 37/164 (22%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
V++L + + + +R + G SDN+IR+WDI + + + E +
Sbjct: 167 TCEFVRTLNGHKRGIACLQY-----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 221
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
RI SG +I VW D
Sbjct: 222 RCIRFDNK------RIVSGAYDGKIKVW------------------------DLVAALDP 251
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284
+ L LV H G +FR+++ ++VS S D + IW+
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 4e-06
Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 42/180 (23%)
Query: 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213
D +I+VW+ S + ++ + + + SG+ N I +W ++
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNG------HKRGIACLQYRDRLVVSGSSDNTIRLWDIEC- 207
Query: 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273
C ++ + ++VS
Sbjct: 208 --------------------GACLRVLEGHE--------------ELVRCIRFDNKRIVS 233
Query: 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333
+ D ++W++ A + + + L H+ RV+ + I+++ D T +W
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRT-LVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 35/330 (10%), Positives = 78/330 (23%), Gaps = 38/330 (11%)
Query: 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AEYWKDSDSIEEVGSSV 303
N + H+ IF + S VS S D ++W+ + + D
Sbjct: 5 ATANAGK--AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 304 LYGHNARVWDCCLTDS----FIITAGEDCTCRVWG-SDGKQLKMIKEH---------IGR 349
H+ V D+ + T + + + K +
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120
Query: 350 GIWRCL-----YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIK 404
W LS LV + +F F + + +
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF-----------ADESNSLTLNWSP 169
Query: 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG--YLYHTKLCDMDSVNWNKILQVS 462
+ + S++ + ++ + N+G + ++ ++
Sbjct: 170 TLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 463 EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER 522
I + D +G + P S +
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 523 QLLGTYWCKSLGHRFIFTADPKGRLKLWQL 552
+ + G G+L+ W +
Sbjct: 290 SWVMSLSFNDSGETLCSAGW-DGKLRFWDV 318
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 39/368 (10%), Positives = 99/368 (26%), Gaps = 47/368 (12%)
Query: 18 GEISALCFVHLPSHLSSLPFLLA--GSGSQVLLYDLEAGTLIRPFQVFHG----IRLHGI 71
+ + + + L+A +L Y + + +
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120
Query: 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL---VQSL 128
S + + VA + +++ + ++ L L V+S
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180
Query: 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG 188
S + V + +A G ++ ++++
Sbjct: 181 MTPSQFATSVDI----SERGLIATGFNNGTVQIS---------------ELSTLRPLYNF 221
Query: 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248
++ ++ S +I + + +A NS + + + L H++
Sbjct: 222 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 281
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
H + + ++ G L S D R W+V+ + E + + L H
Sbjct: 282 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK--------TKERI--TTLNMHC 331
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368
+ + V+ + +G + L+ L
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGVFDVK---------FLKKGWRSGMGADLNESLCCVCL 382
Query: 369 DSAIKVHQ 376
D +I+ +
Sbjct: 383 DRSIRWFR 390
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 20/236 (8%), Positives = 58/236 (24%), Gaps = 31/236 (13%)
Query: 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMK------ 185
+F V N D ++VWD ++
Sbjct: 14 DADIFSVSAC-----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 186 ---LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ-- 240
+ D E +A+ + +++ +++ E + + + + L+
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 241 -DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299
+ +G+ + ++ + S++ + S +
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT------------ 176
Query: 300 GSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRC 354
+ ++ I T + T ++ + E I
Sbjct: 177 -VESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 34/304 (11%), Positives = 80/304 (26%), Gaps = 17/304 (5%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
GH +I + S+ G L S + W++ H +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN---------RVFPDVHATMI 58
Query: 312 WDCCLTDSF-IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL--SSLLVTAGF 368
T + T D +V + G + K + + L ++ + A
Sbjct: 59 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118
Query: 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428
I ++ + + + + ++ + + S +
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178
Query: 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVA 488
+ +A ++ + V + E + + D V
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238
Query: 489 LGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548
L G + ++ +V +++ P A + W I +A +K
Sbjct: 239 LATGSLDNSV--IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE---TTIVSAGQDSNIK 293
Query: 549 LWQL 552
W +
Sbjct: 294 FWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 5e-04
Identities = 24/256 (9%), Positives = 59/256 (23%), Gaps = 9/256 (3%)
Query: 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSL 359
V YGHN + + + +A + W S G ++ + I S
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKS 419
L + D V ++S + + +
Sbjct: 67 GDLFTVSWDDHLKVVPAGG----SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 420 EYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479
LT Y ++ + + + + G + + + + +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539
+ + + V ++ W + +
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD--NVRLA 240
Query: 540 TADPKGRLKLWQLCDP 555
T + +W + P
Sbjct: 241 TGSLDNSVIVWNMNKP 256
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 7e-04
Identities = 41/318 (12%), Positives = 79/318 (24%), Gaps = 37/318 (11%)
Query: 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77
I+AL L S A + + +D+ G R F H + GI
Sbjct: 13 KAITALSSSADGKTLFS-----ADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 78 CTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137
V G + V+ S + S +
Sbjct: 68 DLFTVSWDDHLKVVPAGG----------------------SGVDSSKAVANKLSSQPLGL 105
Query: 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197
+ + S S + + D+ +
Sbjct: 106 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 165
Query: 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257
SG +E+ E + ++ S + H
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225
Query: 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-- 315
+ + WS +L + S D S +W + + + + H +
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVW--------NMNKPSDHPIIIKGAHAMSSVNSVIW 277
Query: 316 LTDSFIITAGEDCTCRVW 333
L ++ I++AG+D + W
Sbjct: 278 LNETTIVSAGQDSNIKFW 295
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 6e-07
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314
HE + ++++ CG VS D W + + ++ V C
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAW--------RTPYGASI---FQSKESSSVLSC 312
Query: 315 CLT--DSFIITAGEDCTCRVW 333
++ D +I+T D V+
Sbjct: 313 DISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 43/312 (13%), Positives = 76/312 (24%), Gaps = 52/312 (16%)
Query: 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167
P++ P + + +L V V + ++VWDIS+
Sbjct: 28 FPPDALIGPGIPRHARQINTL-NHGEVVCAVTI----SNPTRHVYTGGKGCVKVWDISHP 82
Query: 168 SIILEVHSPE--------RCLLYS----MKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215
V + R + G L I I ++
Sbjct: 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142
Query: 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275
A + + S H + + GH I+ S+ G+KL +
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL------------------- 316
D + R W++R S+ Y +
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262
Query: 317 -------------TDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSLSSL 362
+ ++ G+D W G + KE + C
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES--SSVLSCDISVDDKY 320
Query: 363 LVTAGFDSAIKV 374
+VT D V
Sbjct: 321 IVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 221 SPEGNHAHGSSSD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278
+ G + D ++ S+ + S +V+ S D+
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGA-----SIFQSKESSSVLSCDISVDDKYIVTGSGDK 328
Query: 279 SARIWEV 285
A ++EV
Sbjct: 329 KATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 8e-04
Identities = 31/310 (10%), Positives = 75/310 (24%), Gaps = 24/310 (7%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
+ H + + S+ + + ++W++ K V +
Sbjct: 44 QINTLNHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNK-----SPVSQLDCLNRD 97
Query: 309 ARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ C L D + G + + IK + C + ++
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA-----ISPD 152
Query: 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427
L + ++F G T+ S + T VR L
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 428 TSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487
L ++ C + + + + + +
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK 272
Query: 488 ALGDGK-----GNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD 542
GK G ++ F S+ + S+ ++I T
Sbjct: 273 FAYCGKWFVSTGKDNLLNAW-RTPYGASIFQSKESSSV------LSCDISVDDKYIVTGS 325
Query: 543 PKGRLKLWQL 552
+ ++++
Sbjct: 326 GDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317
I W+ +++ ++ I+E W L HN +V
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV--------QVHELKEHNGQVTGVDWA 60
Query: 318 --DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRC 354
+ I+T G D VW G+ K +
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 37/299 (12%), Positives = 87/299 (29%), Gaps = 18/299 (6%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
+ + ++ + + + V + L H G + ++W+ +++V+ DR+A
Sbjct: 16 NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 75
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQ 339
+W ++ WK + I + R + + C +D
Sbjct: 76 YVWTLKGRTWKPTLVILRINR---AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132
Query: 340 LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399
K IK+ I + + S LL D ++ P
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI-KEVEERPAPTPWGSKMPFG 191
Query: 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459
+ + + + R ++ + T+ +A + L
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL------- 244
Query: 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSA 518
P++ + ++ G D + L + G + P+ S +A
Sbjct: 245 ------PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.0 bits (94), Expect = 6e-04
Identities = 27/202 (13%), Positives = 62/202 (30%), Gaps = 17/202 (8%)
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+ ++F + + + + S V + +A D+
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
++ + D + + S LL + +L +A+G +++ D
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSL----VAAGH-DCFPVLFTYDSAAGKL 278
Query: 218 LLNSPEGNH---AHGSSSDFKCFKLQDQQ-----HTAVNLFRLVGHEGSIFRIEWSSCG- 268
+ + + F+ D++ A H+ S+ +I S G
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338
Query: 269 ---SKLVSVSDDRSARIWEVRA 287
S+ + D IW+VR+
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 14/104 (13%), Positives = 25/104 (24%), Gaps = 10/104 (9%)
Query: 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313
+ I I+ S L+ S D S +++ + V + +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFD-------IQAKNVDLLQSLRYKHPLLC 61
Query: 314 CCL---TDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRC 354
C TD I G + + C
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 8e-05
Identities = 20/229 (8%), Positives = 57/229 (24%), Gaps = 27/229 (11%)
Query: 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172
P + + ++ + + L +G +++ ++ + +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232
+ E A +I + V D
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD------------------DQG 227
Query: 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292
D + + + IE+S L + D W +
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW--------N 279
Query: 293 SDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLK 341
+ +++ + + V +D+ + A D T + + + ++
Sbjct: 280 LQTRKKI-KNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIE 327
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 10/174 (5%), Positives = 39/174 (22%), Gaps = 27/174 (15%)
Query: 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH------------------ 174
+++L + D + EV
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH---VAPLLNSPEGNHAHGSS 231
P + + +++ + + + ++ + G+
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285
K + ++ + ++ + S+ ++ DD + +
Sbjct: 296 EKGVLLKYDVKTR------KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 2e-04
Identities = 27/339 (7%), Positives = 64/339 (18%), Gaps = 33/339 (9%)
Query: 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96
++ + + + D+ + T+ + + + T V
Sbjct: 11 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA----PDNR-----TAYVLNNHY 61
Query: 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156
+ +L+ TC N + + + + +
Sbjct: 62 GDIYGIDLD------------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109
Query: 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216
LEV S L + + + V D +
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD 169
Query: 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276
+ + + +
Sbjct: 170 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ-SPRHEFSMLYTIARFKDDKQDPATADL 228
Query: 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336
D + + G + D
Sbjct: 229 LYGYLSV--------DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY--D 278
Query: 337 GKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
KQ K+IK ++ + +D L G + + V
Sbjct: 279 LKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
Query: 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267
+ S + + + L H+ + + W +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268
Query: 268 GSKLVSVSDDRSARIWEV 285
S LVS D + W V
Sbjct: 269 PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 0.003
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 19/85 (22%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
L + GH I + + L+S S D W SS+ H+
Sbjct: 6 LKTISGHNKGITALTVN----PLISGSYDGRIMEWSS---------------SSMHQDHS 46
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVW 333
+ + + ++
Sbjct: 47 NLIVSLDNSKAQEYSSISWDDTLKV 71
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 35/300 (11%), Positives = 78/300 (26%), Gaps = 21/300 (7%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96
+ +G+ V + + T + H + S + C G V V
Sbjct: 32 IQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 91
Query: 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156
+K F + F V + + G
Sbjct: 92 HILKTTIPVFSGPVKDISWDSESKR--------IAAVGEGRERFGHVFLFDTGTSNGNLT 143
Query: 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216
R + + ++ ++ + G + + + +
Sbjct: 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203
Query: 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276
+G + D + + + V H GS+F + WS G+K+ S S
Sbjct: 204 FASTGGDGTIVLYNGVDGTKTGVFEDDS-----LKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336
D++ +IW V + + V + T +++ + +
Sbjct: 259 DKTIKIWNVA-----TLKVEKTI--PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.9 bits (91), Expect = 0.001
Identities = 31/265 (11%), Positives = 64/265 (24%), Gaps = 15/265 (5%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
+L+ + SH A G ++R+WD + ++ IL+ P
Sbjct: 47 SLTDTEIYTEHSHQTTVAKT---SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 103
Query: 181 LYS----------MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230
+ G+ E ++
Sbjct: 104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 163
Query: 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290
S + H + + ++ GS S D + ++
Sbjct: 164 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 223
Query: 291 KDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGR 349
+ + + G + I +A D T ++W + K K I
Sbjct: 224 TGVFEDDSLKNVAHSGSV-FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 350 GIWRCLYDSLSSLLVTAGFDSAIKV 374
+ LV+ + I
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 28/314 (8%), Positives = 70/314 (22%), Gaps = 24/314 (7%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
L GH S+ + +++ +DD+ R++ DS + + + L GH+ V
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVY--------DSINKKFLLQ--LSGHDGGV 56
Query: 312 WDCCLT-DSFIITAGE--DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368
W +++ + + +VT
Sbjct: 57 WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428
D+ + V + T + + + ++
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176
Query: 429 SEDTLYI---ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485
+ + D + + MD G
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236
Query: 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPK- 544
+ G + + + + + +Y +L F
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296
Query: 545 ------GRLKLWQL 552
+ ++ L
Sbjct: 297 LVSGSENQFNIYNL 310
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 0.001
Identities = 41/311 (13%), Positives = 90/311 (28%), Gaps = 13/311 (4%)
Query: 302 SVLYGHNARVWDCC-LTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSL 359
+ L GH V C D+++IT +D RV+ + K L + H G G+W L +
Sbjct: 6 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVW-ALKYAH 63
Query: 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKS 419
+LV+ D ++V + E + T + + + +T S+
Sbjct: 64 GGILVSGSTDRTVRVWDIKKG------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 420 EYVRCLHLTSEDTLYIATNHGY---LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476
+ L E ++ ++HT + V + S +++ +
Sbjct: 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 177
Query: 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536
I VA ++ SA ++ +
Sbjct: 178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237
Query: 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596
+ L S+ S + + + S + + + + +
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 297
Query: 597 CGDLRGNLVLF 607
++
Sbjct: 298 VSGSENQFNIY 308
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 0.001
Identities = 30/267 (11%), Positives = 58/267 (21%), Gaps = 36/267 (13%)
Query: 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL------YSMKLWGDNLEALRI 196
+A G + + V+D ++ P+ + L D L
Sbjct: 64 ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 123
Query: 197 ASGTIYNEIIVWKVDWEHVAPL------LNSPEGNHAHGS-SSDFKCFKLQDQQHTAVNL 249
+V L P D K+ +
Sbjct: 124 QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183
Query: 250 FRL----VGHEGSIFRIEWSSCGSKLVSVSDDRSARIW-----EVRAEYWKDSDSIEEVG 300
E I +S +LV + + + ++ + E
Sbjct: 184 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243
Query: 301 SSVLYGH---------NARVWDCCLTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRG 350
G R++ V G++L + +G
Sbjct: 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHE 301
Query: 351 IWRCLY--DSLSSLLVTAGFDSAIKVH 375
I D L + D + +H
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 0.001
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSF 320
K +V D + R+W+V + + V L + +
Sbjct: 259 SWLDSQKFATVGADATIRVWDVT--------TSKCVQKWTLDKQQLGNQQVGVVATGNGR 310
Query: 321 IITAGEDCTCRVW 333
II+ D T +
Sbjct: 311 IISLSLDGTLNFY 323
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.78 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.77 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.74 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.69 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.68 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.66 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.56 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.55 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.51 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.51 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.51 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.46 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.33 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.14 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.99 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.99 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.97 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.96 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.93 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.52 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.34 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.25 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.25 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.21 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.19 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.13 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.02 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.0 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.87 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.86 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.81 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.74 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.51 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.5 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.46 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.17 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.47 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.94 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.18 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.89 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.64 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.58 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.51 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 93.35 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.96 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.85 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 90.18 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 85.4 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 84.19 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 81.58 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 80.03 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-31 Score=299.25 Aligned_cols=280 Identities=13% Similarity=0.191 Sum_probs=234.2
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeE---EEEe-eeCCcceEEEEecccccccCCCccceeeE
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLI---RPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~---~~~~-~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
.|..+|+||+|+ |+ +++|++|+|+.|+|||+.++... ..+. ..+...|.+++|+ |+++ .+
T Consensus 49 ~H~~~V~~v~fs--~~----g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s-------~dg~---~l 112 (337)
T d1gxra_ 49 NHGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-------PDGC---TL 112 (337)
T ss_dssp CCSSCCCEEEEC--SS----SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-------TTSS---EE
T ss_pred CCCCcEEEEEEC--CC----CCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc-------CCCC---EE
Confidence 477899999999 99 99999999999999999865332 2222 1233479999999 7873 45
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
++++.|++|++||+.... .+....+.+|...|.+++|+| ++.++++++.|+.|++|++.+++..
T Consensus 113 ~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~~~~~~~~~~~ 176 (337)
T d1gxra_ 113 IVGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp EEEESSSEEEEEECCCC---------------EEEEEEECSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEeecccccccccccccc-------------ccccccccccccccccccccc---ccccccccccccccccccccccccc
Confidence 455569999999987543 456677889999999999999 9999999999999999999999887
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.....+.. .+.++++ ++++..+++|+.|+.|++||++ +++.+.
T Consensus 177 ~~~~~~~~-~v~~l~~---s~~~~~~~~~~~d~~v~i~d~~---------------------------------~~~~~~ 219 (337)
T d1gxra_ 177 RQFQGHTD-GASCIDI---SNDGTKLWTGGLDNTVRSWDLR---------------------------------EGRQLQ 219 (337)
T ss_dssp EEECCCSS-CEEEEEE---CTTSSEEEEEETTSEEEEEETT---------------------------------TTEEEE
T ss_pred cccccccc-ccccccc---cccccccccccccccccccccc---------------------------------cceeec
Confidence 77665544 3556665 5788999999999999999998 555555
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
.+ .|.+.|.+++|+|+++++++++.|+.+++||+..... .....|...|.+++|+ +.+|++++.||
T Consensus 220 ~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg 287 (337)
T d1gxra_ 220 QH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cc-ccccceEEEEEcccccccceecccccccccccccccc-----------ccccccccccceEEECCCCCEEEEEeCCC
Confidence 44 4889999999999999999999999999999988533 2667899999999998 57999999999
Q ss_pred cEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.|++||. +++.+..+. |.. +|++++|+|++++|++|+.||+|++||+
T Consensus 288 ~i~iwd~~~~~~~~~~~-~~~-~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 288 LLNAWRTPYGASIFQSK-ESS-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTTCCEEEEEE-CSS-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred eEEEEECCCCCEEEEcc-CCC-CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9999999 777777665 555 6999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-31 Score=302.95 Aligned_cols=310 Identities=15% Similarity=0.299 Sum_probs=241.7
Q ss_pred CCCCceEEecCCCc-----------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee-------
Q 001391 2 GKKDLSEWRLDVGQ-----------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF------- 63 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-----------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~------- 63 (1088)
.++...+|+....+ |.++|+||+|+ || +++||+|+|+.|+|||+.+++.+..+..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs--~d----g~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 36 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS--ND----GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDP 109 (388)
T ss_dssp CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEEC--TT----SSEEEEECBSCEEEEETTTCCEEEEECC--------
T ss_pred CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEEC--CC----CCEEEEEeCCeEEEEEecccceEeeecccccccccc
Confidence 35667888865443 66899999999 99 89999999999999999999988777542
Q ss_pred ----------CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 64 ----------HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 64 ----------~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
+...|.+++|+ |+++ .+++++.|+.|++|+... .+.+..+.+|..
T Consensus 110 ~~~~~~~~~~~~~~V~~l~~s-------~~~~---~l~s~~~dg~v~i~~~~~---------------~~~~~~~~~h~~ 164 (388)
T d1erja_ 110 ENLNTSSSPSSDLYIRSVCFS-------PDGK---FLATGAEDRLIRIWDIEN---------------RKIVMILQGHEQ 164 (388)
T ss_dssp ---------CCCCBEEEEEEC-------TTSS---EEEEEETTSCEEEEETTT---------------TEEEEEECCCSS
T ss_pred cccccccccCCCCCEEEEEEC-------CCCC---cceecccccccccccccc---------------cccccccccccc
Confidence 22358999999 7773 445556699999999874 456777889999
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.|.++++++ ++..+++|+.++.+++||..+.........+... ..+.+ ...++.+|++|+.||.|++|+..+.
T Consensus 165 ~v~~~~~~~---~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~l~~~~~d~~i~i~~~~~~ 237 (388)
T d1erja_ 165 DIYSLDYFP---SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--TTVAV--SPGDGKYIAAGSLDRAVRVWDSETG 237 (388)
T ss_dssp CEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE--EEEEE--CSTTCCEEEEEETTSCEEEEETTTC
T ss_pred ccccccccc---ccccccccccceeeeeeecccccccccccccccc--ccccc--cCCCCCeEEEEcCCCeEEEeecccC
Confidence 999999999 9999999999999999999988877766554432 22333 2467889999999999999999822
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
..... -........+|.+.|.+++|+|++++|++++.|+.|++||+........
T Consensus 238 ~~~~~--------------------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 291 (388)
T d1erja_ 238 FLVER--------------------------LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291 (388)
T ss_dssp CEEEE--------------------------EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred cccee--------------------------eccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccc
Confidence 21110 0112233457999999999999999999999999999999987643110
Q ss_pred C----CceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE------cCCC
Q 001391 294 D----SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY------DSLS 360 (1088)
Q Consensus 294 ~----~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~------~~dg 360 (1088)
. ..... .....|...|.+++|+ +.+|++|+.||+|++||+ +++++.++.+|.+ .|.++++ +|++
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~-~V~~~~~~~~~~~spd~ 368 (388)
T d1erja_ 292 SKTPNSGTCE--VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEY 368 (388)
T ss_dssp -------CEE--EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTC
T ss_pred ccccccccee--eecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC-CEEEEEEecCcccCCCC
Confidence 0 01112 2667899999999998 689999999999999999 8999999999998 6999985 5688
Q ss_pred CEEEEEeCCCCEEEEEcC
Q 001391 361 SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+|+||+.||+|++|+++
T Consensus 369 ~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 369 NVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred CEEEEEeCCCEEEEEeee
Confidence 999999999999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.9e-31 Score=288.28 Aligned_cols=278 Identities=19% Similarity=0.343 Sum_probs=243.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++|+|+ |+ +++|++|+ |++|+|||+.+++++.++..|.. .|.+++++ |++. .++...
T Consensus 16 H~~~I~~l~~s--p~----~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~-~V~~~~~~-------~~~~---~~~~~~ 78 (317)
T d1vyhc1 16 HRSPVTRVIFH--PV----FSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFD-------HSGK---LLASCS 78 (317)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred CCCCeEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-cEEEEeee-------cccc---cccccc
Confidence 77899999999 99 89999988 79999999999999999998776 79999999 6762 444555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.++.+.+|+... .+....+.+|...+.++.|+| ++..+++++.|+.+++||+.+++.+..+.
T Consensus 79 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 140 (317)
T d1vyhc1 79 ADMTIKLWDFQG---------------FECIRTMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTFT 140 (317)
T ss_dssp TTSCCCEEETTS---------------SCEEECCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccc---------------cccccccccccccceeeeccC---CCceEEeeccCcceeEeecccceeeeEEc
Confidence 688999998774 345666778999999999999 99999999999999999999999888887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+... ..++.+ ++++.+|++++.|+.|++|+.. .......+.+
T Consensus 141 ~~~~~-~~~~~~---~~~~~~l~~~~~d~~v~~~~~~---------------------------------~~~~~~~~~~ 183 (317)
T d1vyhc1 141 GHREW-VRMVRP---NQDGTLIASCSNDQTVRVWVVA---------------------------------TKECKAELRE 183 (317)
T ss_dssp CCSSC-EEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred cCCCc-ceeeec---ccCCCEEEEEeCCCeEEEEeec---------------------------------cceeeEEEec
Confidence 65543 445554 6789999999999999999998 6777888899
Q ss_pred CCCCEEEEEEcCCC--------------------CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE
Q 001391 255 HEGSIFRIEWSSCG--------------------SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (1088)
Q Consensus 255 h~~~V~~v~~sp~g--------------------~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v 314 (1088)
|...+.++.|+|++ .++++++.|+.|++||+.++ +.+. .+.+|...|.++
T Consensus 184 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--------~~~~--~~~~~~~~v~~~ 253 (317)
T d1vyhc1 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--------MCLM--TLVGHDNWVRGV 253 (317)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--------EEEE--EEECCSSCEEEE
T ss_pred CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC--------cEEE--EEeCCCCCEEEE
Confidence 99999999998753 47899999999999999885 4443 778999999999
Q ss_pred EEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 315 CLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 315 ~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+++ +.+|++|+.||.|++||+ +++++..+.+|.+ +|++++|+|++++|++|+.||+|++||
T Consensus 254 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 998 679999999999999999 7899999999998 799999999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-30 Score=288.59 Aligned_cols=287 Identities=14% Similarity=0.074 Sum_probs=235.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-E
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~ 94 (1088)
+.+.+.+++++ |+ +..|+.+.++.|.+||+.+++..+.+.+|.. .|.+++|+ |+| .+|++ +
T Consensus 16 ~r~~~~~~a~~--~~----g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~-~v~~~~~s-------p~g----~~latg~ 77 (311)
T d1nr0a1 16 ARGTAVVLGNT--PA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-QTTVAKTS-------PSG----YYCASGD 77 (311)
T ss_dssp CTTCCCCCEEC--TT----SSEEEEEETTEEEEEETTCSSCCEEECCCSS-CEEEEEEC-------TTS----SEEEEEE
T ss_pred CCCCeEEEEEc--CC----CCEEEEEeCCEEEEEECCCCceeEEEcCCCC-CEEEEEEe-------CCC----CeEeccc
Confidence 34566788999 99 8899999999999999999999999988766 79999999 887 45555 5
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCceEEE
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILE 172 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~~~~ 172 (1088)
.|++|+||++.... ......+.+|.+.|.+++|+| ++++|++++. +..+++|++++++...+
T Consensus 78 ~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~v~~s~---d~~~l~~~~~~~~~~~~v~~~~~~~~~~~ 141 (311)
T d1nr0a1 78 VHGNVRIWDTTQTT-------------HILKTTIPVFSGPVKDISWDS---ESKRIAAVGEGRERFGHVFLFDTGTSNGN 141 (311)
T ss_dssp TTSEEEEEESSSTT-------------CCEEEEEECSSSCEEEEEECT---TSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred cCceEeeeeeeccc-------------cccccccccccCccccccccc---ccccccccccccccccccccccccccccc
Confidence 59999999998643 334456789999999999999 9999999885 45699999999988887
Q ss_pred eccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
+..+.. .+.++++ +|++. .+++|+.||.|++||++ +.+....
T Consensus 142 l~~h~~-~v~~v~~---~~~~~~~l~sgs~d~~i~i~d~~---------------------------------~~~~~~~ 184 (311)
T d1nr0a1 142 LTGQAR-AMNSVDF---KPSRPFRIISGSDDNTVAIFEGP---------------------------------PFKFKST 184 (311)
T ss_dssp CCCCSS-CEEEEEE---CSSSSCEEEEEETTSCEEEEETT---------------------------------TBEEEEE
T ss_pred cccccc-ccccccc---cccceeeeccccccccccccccc---------------------------------ccccccc
Confidence 776654 4667776 45565 58899999999999998 7778888
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee--ceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG--SSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~--~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
+.+|...|.++.|+|+++++++++.|+.|++||..++.. ...+. .....+|...|++++|+ +.+|++|+.|
T Consensus 185 ~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~-----~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D 259 (311)
T d1nr0a1 185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 259 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccCccccccccccccccccccccccccc-----cccccccccccccccccccccccCCCCCEEEEEeCC
Confidence 999999999999999999999999999999999988643 11111 02456799999999998 6899999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
|+|++||+ ++++++++..|.......+.+.++++.|++++.||.|++||++
T Consensus 260 g~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 260 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99999999 8888888877754223334444555679999999999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=9.3e-29 Score=275.95 Aligned_cols=283 Identities=15% Similarity=0.261 Sum_probs=236.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++|+|+ |+ +++||+|+ ||+|+|||+.+++.+..+..|.. .|.+++|+ |+++ .+++++
T Consensus 54 H~~~I~~l~~s--~~----~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~v~~~-------~~~~---~l~~~~ 116 (340)
T d1tbga_ 54 HLAKIYAMHWG--TD----SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYA-------PSGN---YVACGG 116 (340)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTTEEEEEETTTTEEEEEEECSCS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred CCCCEEEEEEC--CC----CCEEEEEECCCceeeeecccceeEEEEecccc-cEEeeEee-------ccce---eeeeec
Confidence 77999999999 99 89999988 79999999999999999998766 79999999 7773 555556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.+++|+...... .......+.+|...+......+ +..+.....|.....|............
T Consensus 117 ~d~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 117 LDNICSIYNLKTREG-----------NVRVSRELAGHTGYLSCCRFLD----DNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCCEEEEESSSSCS-----------CCCEEEEECCCSSCEEEEEEEE----TTEEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred ccceeeccccccccc-----------ccccceeccccccccccccccc----cccccccccccccccccccccccccccc
Confidence 699999999875331 2455667788888777777664 4567778889999999988776665554
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
....... .... .+...++++|+.|+.|++||++ ++..+..+.+
T Consensus 182 ~~~~~~~-~~~~---~~~~~~~~~~~~d~~v~i~d~~---------------------------------~~~~~~~~~~ 224 (340)
T d1tbga_ 182 GHTGDVM-SLSL---APDTRLFVSGACDASAKLWDVR---------------------------------EGMCRQTFTG 224 (340)
T ss_dssp CCSSCEE-EEEE---CTTSSEEEEEETTTEEEEEETT---------------------------------TTEEEEEECC
T ss_pred ccceeEe-eecc---ccccceeEEeecCceEEEEECC---------------------------------CCcEEEEEeC
Confidence 4443322 2222 4678899999999999999998 7788889999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|.+.|.+++|+|++++|++++.|+.|++|++.... .+.......|...|.+++|+ +.+|++|+.||.|++
T Consensus 225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~i 296 (340)
T d1tbga_ 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc--------cccccccccccCceEEEEECCCCCEEEEEECCCEEEE
Confidence 99999999999999999999999999999998853 22212445677789999998 679999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
||+ +++++..+.+|.+ +|++++|+|++.+|+||+.||+|++||
T Consensus 297 wd~~~~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 297 WDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999 8899999999998 799999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.5e-28 Score=279.91 Aligned_cols=299 Identities=14% Similarity=0.183 Sum_probs=228.0
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
..||+|++|+ || +++||+|+ ++.|+|||..+++ ++..+++|.+ .|.+++|+ |+++ .++++
T Consensus 7 ~~pIt~~~~s--~d----g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~-~V~~l~fs-------p~~~---~l~s~ 69 (371)
T d1k8kc_ 7 VEPISCHAWN--KD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWA-------PDSN---RIVTC 69 (371)
T ss_dssp SSCCCEEEEC--TT----SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEE-------TTTT---EEEEE
T ss_pred CCCeEEEEEC--CC----CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCC-CEEEEEEC-------CCCC---EEEEE
Confidence 4689999999 99 89999887 6999999998875 6677888776 79999999 7773 44445
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE--
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL-- 171 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~-- 171 (1088)
+.|++|+||++.... .+....+.+|...|.+++|+| +++.|++|+.|++|++|++.......
T Consensus 70 s~D~~i~vWd~~~~~-------------~~~~~~~~~~~~~v~~i~~~p---~~~~l~~~s~d~~i~i~~~~~~~~~~~~ 133 (371)
T d1k8kc_ 70 GTDRNAYVWTLKGRT-------------WKPTLVILRINRAARCVRWAP---NEKKFAVGSGSRVISICYFEQENDWWVC 133 (371)
T ss_dssp ETTSCEEEEEEETTE-------------EEEEEECCCCSSCEEEEEECT---TSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred ECCCeEEEEeecccc-------------ccccccccccccccccccccc---ccccceeecccCcceeeeeecccccccc
Confidence 569999999998543 455666788999999999999 99999999999999999997765432
Q ss_pred -EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc-ccceeee
Q 001391 172 -EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ-QHTAVNL 249 (1088)
Q Consensus 172 -~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~ 249 (1088)
.........+.++++ +|++.+|++|+.|+.|++|+............ ..|.. ......+
T Consensus 134 ~~~~~~~~~~v~~v~~---~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 194 (371)
T d1k8kc_ 134 KHIKKPIRSTVLSLDW---HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP----------------TPWGSKMPFGELM 194 (371)
T ss_dssp EEECTTCCSCEEEEEE---CTTSSEEEEEETTSCEEEEECCCTTTSCCCCC----------------BTTBSCCCTTCEE
T ss_pred cccccccccccccccc---cccccceeccccCcEEEEEeeccCcccccccc----------------ccccccccceeee
Confidence 223344556777777 67899999999999999999873322111100 00000 0124556
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDC 328 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg 328 (1088)
....+|.+.|.+++|+|++++|++++.|+.|++||+..+ +.+. .+.+|..+|.+++|+ +..+++++.|+
T Consensus 195 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~--------~~~~--~~~~~~~~v~s~~fs~d~~~la~g~d~ 264 (371)
T d1k8kc_ 195 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK--------MAVA--TLASETLPLLAVTFITESSLVAAGHDC 264 (371)
T ss_dssp EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT--------TEEE--EEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred eeccCccCcEEEEEeecccccccccccCCcceEEeeecc--------ccee--eeecccccceeeeecCCCCEEEEEcCC
Confidence 677899999999999999999999999999999999885 3343 678899999999998 55666677788
Q ss_pred cEEEEcC--CCceeE----------------------------------------EEcccCCCCeEEEEEcCCC----CE
Q 001391 329 TCRVWGS--DGKQLK----------------------------------------MIKEHIGRGIWRCLYDSLS----SL 362 (1088)
Q Consensus 329 ~i~vWd~--~~~~~~----------------------------------------~~~~h~~~~V~~l~~~~dg----~~ 362 (1088)
.+++|.. ....+. ....|.+ .|.++++.+.+ ..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~-~I~~i~~~~~~~~~~~~ 343 (371)
T d1k8kc_ 265 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQ 343 (371)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEESTTTSCSE
T ss_pred ceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccC-CEEEEEEeCCCCcceEE
Confidence 8877764 111000 0012666 69999997754 36
Q ss_pred EEEEeCCCCEEEEEcC
Q 001391 363 LVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 363 l~tg~~Dg~I~iwd~~ 378 (1088)
++|+|.||.|++||++
T Consensus 344 ~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 344 FCTTGMDGGMSIWDVR 359 (371)
T ss_dssp EEEEETTSEEEEEEHH
T ss_pred EEEEcCCCeEEEEeCC
Confidence 8999999999999984
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.2e-28 Score=273.07 Aligned_cols=288 Identities=15% Similarity=0.219 Sum_probs=229.1
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
+.++++. |...|.+++|+ |+| .+|++++|+.|+|||+...... .........+|.+.
T Consensus 43 ~~~~~~~--H~~~V~~v~fs-------~~g----~~latg~dg~V~iWd~~~~~~~----------~~~~~~~~~~h~~~ 99 (337)
T d1gxra_ 43 RQINTLN--HGEVVCAVTIS-------NPT----RHVYTGGKGCVKVWDISHPGNK----------SPVSQLDCLNRDNY 99 (337)
T ss_dssp EEEEEEC--CSSCCCEEEEC-------SSS----SEEEEECBSEEEEEETTSTTCC----------SCSEEEECSCTTSB
T ss_pred eEEEECC--CCCcEEEEEEC-------CCC----CEEEEEECCEEEEEEccCCccc----------ceeEEeeecCCCCc
Confidence 4455552 34479999999 888 6788888999999999864311 12233445689999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
|.+++|+| ++++|++|+.|++|++||+.... ....+..+.. .+..+.+ ++++..+++++.|+.|++|++.
T Consensus 100 I~~v~~s~---dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~l~s~~~d~~i~~~~~~- 171 (337)
T d1gxra_ 100 IRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-ACYALAI---SPDSKVCFSCCSDGNIAVWDLH- 171 (337)
T ss_dssp EEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT-
T ss_pred EEEEEEcC---CCCEEEEeecccccccccccccccccccccccccc-ccccccc---cccccccccccccccccccccc-
Confidence 99999999 99999999999999999987543 3444444433 3445554 6789999999999999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
+.+......+|...|.+++|++++..+++++.|+.+++||+.+++.
T Consensus 172 --------------------------------~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~-- 217 (337)
T d1gxra_ 172 --------------------------------NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-- 217 (337)
T ss_dssp --------------------------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred --------------------------------ccccccccccccccccccccccccccccccccccccccccccccee--
Confidence 6677788889999999999999999999999999999999988532
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+ ....|...|.+++|+ +.++++|+.|+.+++||+..........|.. +|++++|+|++++|++++.||
T Consensus 218 ------~---~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~i~~v~~s~~g~~l~s~s~Dg 287 (337)
T d1gxra_ 218 ------L---QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES-CVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp ------E---EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSS-CEEEEEECTTSSEEEEEETTS
T ss_pred ------e---cccccccceEEEEEcccccccceecccccccccccccccccccccccc-ccceEEECCCCCEEEEEeCCC
Confidence 2 445688999999998 6799999999999999995555556777887 799999999999999999999
Q ss_pred CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEe
Q 001391 371 AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKL 447 (1088)
Q Consensus 371 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~ 447 (1088)
.|++||+.... .+.. ..+...|.+++|+|++++++ ++.+|.|..|++
T Consensus 288 ~i~iwd~~~~~-----------------~~~~-------------~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 288 LLNAWRTPYGA-----------------SIFQ-------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTTCC-----------------EEEE-------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred eEEEEECCCCC-----------------EEEE-------------ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 99999985321 1111 12446799999999987655 567888887664
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.2e-28 Score=270.95 Aligned_cols=285 Identities=17% Similarity=0.177 Sum_probs=219.3
Q ss_pred cCCCceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 11 LDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 11 l~~g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
+..| |.++|++|+|+ |+ +++|++|+ |++|+|||+.+++++..+...+...|.+++|+ |++ .
T Consensus 7 ~~~G-H~~~V~~l~~s--~d----g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~-------~~g----~ 68 (299)
T d1nr0a2 7 VRYG-HNKAITALSSS--AD----GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-------SKG----D 68 (299)
T ss_dssp EECC-CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC-------TTS----C
T ss_pred EcCC-CCCCcEEEEEC--CC----CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEee-------ccc----e
Confidence 3445 56899999999 99 89999988 79999999999999988865455589999999 777 6
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|+.+++|++..... .........|...+.+++|+| +++++++++ ++.+++|+... .
T Consensus 69 ~~~~~~d~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~---~g~~~~~~~-~~~i~~~~~~~--~ 130 (299)
T d1nr0a2 69 LFTVSWDDHLKVVPAGGSGV------------DSSKAVANKLSSQPLGLAVSA---DGDIAVAAC-YKHIAIYSHGK--L 130 (299)
T ss_dssp EEEEETTTEEEEECSSSSSS------------CTTSCCEEECSSCEEEEEECT---TSSCEEEEE-SSEEEEEETTE--E
T ss_pred eecccceeeEEEeccCCccc------------ccccccccccccccccccccc---ccccccccc-ccccccccccc--c
Confidence 88888899999999874321 112223346778899999999 988776654 67899998542 2
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee-
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN- 248 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~- 248 (1088)
......+. ..++++ ++++.++++|+.||.|++||+. ....
T Consensus 131 ~~~~~~~~---~~~~~~---s~~~~~l~~g~~dg~i~~~d~~---------------------------------~~~~~ 171 (299)
T d1nr0a2 131 TEVPISYN---SSCVAL---SNDKQFVAVGGQDSKVHVYKLS---------------------------------GASVS 171 (299)
T ss_dssp EEEECSSC---EEEEEE---CTTSCEEEEEETTSEEEEEEEE---------------------------------TTEEE
T ss_pred cccccccc---cccccc---cccccccccccccccccccccc---------------------------------ccccc
Confidence 22222221 233444 5789999999999999999997 2222
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE 326 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~ 326 (1088)
......|...|.+++|+|+++++++++.|+.|++||+.++.. .... ..+.+|...|.+++|+ +.+|++|+.
T Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 172 EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-----LAHT--NSWTFHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-----ESCC--CCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-----cccc--ccccccccccccccccccccceEEEcC
Confidence 223457999999999999999999999999999999987543 1222 2667899999999998 679999999
Q ss_pred CCcEEEEcC-CCc--eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 327 DCTCRVWGS-DGK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 327 Dg~i~vWd~-~~~--~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
||.|++||+ .+. .......|....|.++.+ +++.+|++++.||+|++||+.
T Consensus 245 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 999999998 333 333444555545766655 566799999999999999983
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2e-28 Score=274.28 Aligned_cols=317 Identities=17% Similarity=0.287 Sum_probs=234.3
Q ss_pred eeee-eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGE-ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~-V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|... |+|++|+ +++|++|+ |++|+|||+.+++++.++.+|.+ .|.+++|+ |++ .++++
T Consensus 11 H~~~vitc~~~~--------~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s-------~~~----~l~s~ 70 (355)
T d1nexb2 11 HMTSVITCLQFE--------DNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYA-------HGG----ILVSG 70 (355)
T ss_dssp CSSSCEEEEEEE--------TTEEEEEETTTEEEEEETTTTEEEEEEECCSS-CEEEEEEE-------TTT----EEEEE
T ss_pred cCCCcEEEEEEC--------CCEEEEEeCCCeEEEEECCCCcEEEEEECCCC-CEEEEEEc-------CCC----EEEEE
Confidence 4455 5788777 67999988 79999999999999999999777 79999999 664 66666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+.|++|++|++.... .........+...+....+.+ ++.++++++.|+.|++||+.+.......
T Consensus 71 s~D~~i~iw~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~iw~~~~~~~~~~~ 134 (355)
T d1nexb2 71 STDRTVRVWDIKKGC-------------CTHVFEGHNSTVRCLDIVEYK---NIKYIVTGSRDNTLHVWKLPKESSVPDH 134 (355)
T ss_dssp ETTCCEEEEETTTTE-------------EEEEECCCSSCEEEEEEEEET---TEEEEEEEETTSEEEEEECCC-------
T ss_pred ecccccccccccccc-------------ccccccccccccccccccccc---ccceeeeecCCCcEEEEEccCCceeccc
Confidence 779999999988532 222233334445566777788 8899999999999999999876544322
Q ss_pred ccCC------------ceeEEEEe-----eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCce
Q 001391 174 HSPE------------RCLLYSMK-----LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1088)
Q Consensus 174 ~~~~------------~~~~~s~~-----~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1088)
.... ........ .....+++.+++++..|+.|++||+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~------------------------- 189 (355)
T d1nexb2 135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA------------------------- 189 (355)
T ss_dssp ----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT-------------------------
T ss_pred cccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecc-------------------------
Confidence 1100 00000000 00113567899999999999999998
Q ss_pred eEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE
Q 001391 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (1088)
Q Consensus 237 ~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~ 316 (1088)
..+.+....++...+.++.|+|++.++++++.|+.|++||+.++ ..+. .+.+|...|.++++
T Consensus 190 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--------~~~~--~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 190 --------QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--------ELMY--TLQGHTALVGLLRL 251 (355)
T ss_dssp --------TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC--------CEEE--EECCCSSCCCEEEE
T ss_pred --------cccceeeeeccccccccccccccceeeecccccceEEeeecccc--------cccc--cccccccccccccc
Confidence 67778888899999999999999999999999999999999885 3343 77899999999999
Q ss_pred CCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEE-EEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccc
Q 001391 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRC-LYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKE 393 (1088)
Q Consensus 317 ~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l-~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~ 393 (1088)
++++|++|+.||+|++||+ ++. ..+..|.. .+.++ .+++++.+|++| .||.|++||+++ +.+..
T Consensus 252 ~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~--------- 318 (355)
T d1nexb2 252 SDKFLVSAAADGSIRGWDANDYS--RKFSYHHT-NLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA--------- 318 (355)
T ss_dssp CSSEEEEECTTSEEEEEETTTCC--EEEEEECT-TCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS---------
T ss_pred ccceeeeeecccccccccccccc--eecccccC-CceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE---------
Confidence 9999999999999999999 443 34455665 45555 456777766655 589999999954 22211
Q ss_pred cCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEE
Q 001391 394 FNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (1088)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~ 444 (1088)
.+.+|.+.|.+++|+|+..+++++.+|.++.
T Consensus 319 --------------------~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l 349 (355)
T d1nexb2 319 --------------------NILKDADQIWSVNFKGKTLVAAVEKDGQSFL 349 (355)
T ss_dssp --------------------CTTTTCSEEEEEEEETTEEEEEEESSSCEEE
T ss_pred --------------------EecCCCCCEEEEEEcCCeEEEEEECCCcEEE
Confidence 1234556799999998755555677888654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.3e-27 Score=267.58 Aligned_cols=329 Identities=16% Similarity=0.183 Sum_probs=235.0
Q ss_pred eeeccCCCCcE-EEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 125 VQSLPRLSHWV-FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 125 ~~~l~~h~~~I-~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
..+|+||.+.| .|++ + ++++||||+.||+|+|||+.+++.+.++..|.. .+.++++. + +.+|++|+.|+
T Consensus 5 ~~tL~GH~~~vitc~~--~---~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s---~-~~~l~s~s~D~ 74 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--F---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYA---H-GGILVSGSTDR 74 (355)
T ss_dssp EEEEECCSSSCEEEEE--E---ETTEEEEEETTTEEEEEETTTTEEEEEEECCSS-CEEEEEEE---T-TTEEEEEETTC
T ss_pred cEEECCcCCCcEEEEE--E---CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC-CEEEEEEc---C-CCEEEEEeccc
Confidence 45688999876 5554 4 678999999999999999999999999987765 46677763 3 45899999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC--CCCCEEEEEEcCCCCEEEEEECCCcEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG--HEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g--h~~~V~~v~~sp~g~~l~s~s~Dg~v~ 281 (1088)
.|++|+.. .......... +........+.+++.++++++.|+.|+
T Consensus 75 ~i~iw~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 121 (355)
T d1nexb2 75 TVRVWDIK---------------------------------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121 (355)
T ss_dssp CEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred cccccccc---------------------------------ccccccccccccccccccccccccccceeeeecCCCcEE
Confidence 99999998 3333333333 334456677889999999999999999
Q ss_pred EEEcCCCcccCCC---------------CceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 282 IWEVRAEYWKDSD---------------SIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 282 iWd~~~~~~~~~~---------------~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
+||+.+....... ....+ .....|...+......+.+++++..|+.+++||+ +++.+....+
T Consensus 122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 199 (355)
T d1nexb2 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV--GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 199 (355)
T ss_dssp EEECCC-----------CCCEEESCTTTCTTEE--EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEccCCceeccccccceeccceecccccccee--eeeeeccccccccccccceeeeecccceeeeeecccccceeeeec
Confidence 9999875432000 00111 1445566777777777899999999999999999 7788888888
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE
Q 001391 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (1088)
Q Consensus 346 h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 425 (1088)
+.. .+.++.++|++.++++++.|+.|++|++..... +..+..|
T Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-----------------------------~~~~~~h------- 242 (355)
T d1nexb2 200 HTD-RIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----------------------------MYTLQGH------- 242 (355)
T ss_dssp CSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTCCE-----------------------------EEEECCC-------
T ss_pred ccc-ccccccccccceeeecccccceEEeeecccccc-----------------------------ccccccc-------
Confidence 877 699999999999999999999999999853100 0000111
Q ss_pred EeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 426 ~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
...+.++++ +++++++|+.||.|++||+.+..
T Consensus 243 --------------------------------------~~~v~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 243 --------------------------------------TALVGLLRL----------SDKFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp --------------------------------------SSCCCEEEE----------CSSEEEEECTTSEEEEEETTTCC
T ss_pred --------------------------------------ccccccccc----------ccceeeeeecccccccccccccc
Confidence 122333333 12578889999999999887543
Q ss_pred cCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEE
Q 001391 506 HTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~ 585 (1088)
.. ...+... ... +.++++++++|++| .|+.|++||++.++. +.....+|...|++
T Consensus 275 ~~------~~~~~~~---~~~-~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~--------------~~~~~~~~~~~V~~ 329 (355)
T d1nexb2 275 RK------FSYHHTN---LSA-ITTFYVSDNILVSG-SENQFNIYNLRSGKL--------------VHANILKDADQIWS 329 (355)
T ss_dssp EE------EEEECTT---CCC-CCEEEECSSEEEEE-ETTEEEEEETTTCCB--------------CCSCTTTTCSEEEE
T ss_pred ee------cccccCC---ceE-EEEEcCCCCEEEEE-eCCEEEEEECCCCCE--------------EEEEecCCCCCEEE
Confidence 21 1122111 111 23467788887776 589999999986531 22223478999999
Q ss_pred EEeeeCCCEEEEEcCCCcEEEEeC
Q 001391 586 LDASFEDEVLFCGDLRGNLVLFPL 609 (1088)
Q Consensus 586 l~~spdg~~LatGs~dg~I~Iw~~ 609 (1088)
++|+|+ .+|++|+.||+++||.+
T Consensus 330 v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 330 VNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEcCC-eEEEEEECCCcEEEEEE
Confidence 999986 57888999999877654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=6.2e-28 Score=267.42 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=216.5
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.+..++++ |+| ..++.+.++.|.+|++.. .+..+.+.+|.+.|++++|+| +
T Consensus 19 ~~~~~a~~-------~~g----~~l~~~~~~~v~i~~~~~---------------~~~~~~~~~H~~~v~~~~~sp---~ 69 (311)
T d1nr0a1 19 TAVVLGNT-------PAG----DKIQYCNGTSVYTVPVGS---------------LTDTEIYTEHSHQTTVAKTSP---S 69 (311)
T ss_dssp CCCCCEEC-------TTS----SEEEEEETTEEEEEETTC---------------SSCCEEECCCSSCEEEEEECT---T
T ss_pred CeEEEEEc-------CCC----CEEEEEeCCEEEEEECCC---------------CceeEEEcCCCCCEEEEEEeC---C
Confidence 46677888 787 677777888999999985 345566789999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceE--EEeccCCceeEEEEeeecCCCCCcEEEEEec--CCeEEEEEeccCccccCCCCC
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIASGTI--YNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~--dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
+++||+|+.||+|++||+.++... ..+..+. ..+.++++ ++++.++++++. +..+++|+++
T Consensus 70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~---s~d~~~l~~~~~~~~~~~~v~~~~----------- 134 (311)
T d1nr0a1 70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-GPVKDISW---DSESKRIAAVGEGRERFGHVFLFD----------- 134 (311)
T ss_dssp SSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-SCEEEEEE---CTTSCEEEEEECCSSCSEEEEETT-----------
T ss_pred CCeEeccccCceEeeeeeecccccccccccccc-Cccccccc---cccccccccccccccccccccccc-----------
Confidence 999999999999999999887654 3344443 34667776 678888888875 4669999998
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
..+....+.+|.+.|.+++|+|++++ +++|+.|+.|++||+++. +...
T Consensus 135 ----------------------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~--------~~~~- 183 (311)
T d1nr0a1 135 ----------------------TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--------KFKS- 183 (311)
T ss_dssp ----------------------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--------EEEE-
T ss_pred ----------------------cccccccccccccccccccccccceeeeccccccccccccccccc--------cccc-
Confidence 55666678899999999999999985 788999999999999884 3333
Q ss_pred eeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEc-------ccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 302 SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK-------EHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~-------~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
...+|...|.++.++ +.++++++.|+.+++||. ++..+..+. +|.+ +|++++|+|++++|++|+.||.
T Consensus 184 -~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~ 261 (311)
T d1nr0a1 184 -TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKT 261 (311)
T ss_dssp -EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSE
T ss_pred -ccccccccccccccCccccccccccccccccccccccccccccccccccccccccc-cccccccCCCCCEEEEEeCCCe
Confidence 777899999999998 689999999999999999 666666553 4666 6999999999999999999999
Q ss_pred EEEEEcCCC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEE
Q 001391 372 IKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTK 446 (1088)
Q Consensus 372 I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~ 446 (1088)
|++||+++. +++++..+. .....+.++.+.++ .+++++.+|.|..|+
T Consensus 262 v~iwd~~t~~~~~~l~~~~---------------------------~~~~~~~~~~~~~~-~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 262 IKIWNVATLKVEKTIPVGT---------------------------RIEDQQLGIIWTKQ-ALVSISANGFINFVN 309 (311)
T ss_dssp EEEEETTTTEEEEEEECCS---------------------------SGGGCEEEEEECSS-CEEEEETTCCEEEEE
T ss_pred EEEEECCCCcEEEEEECCC---------------------------CccceEEEEEecCC-EEEEEECCCEEEEEe
Confidence 999998542 222222111 01123456666654 677888999998654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.2e-27 Score=268.58 Aligned_cols=327 Identities=20% Similarity=0.279 Sum_probs=239.2
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
.+...+++...+|+..... .....+... .+|.+.|+||+|+| ||++||+|+ |++|+|||+.+++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~-~~H~~~V~~l~fs~---dg~~lasg~-d~~i~iW~~~~~~~ 95 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPR----------EIDVELHKS-LDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSL 95 (388)
T ss_dssp TSEEECSSCEEEECTTSCC----------CEEEEEEEE-EECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCE
T ss_pred ccccCCCCcEEEeCCCCCc----------ceeeeeEee-CCCCCcEEEEEECC---CCCEEEEEe-CCeEEEEEecccce
Confidence 4555678888999876432 011223333 36999999999999 999999986 89999999999988
Q ss_pred EEEeccCC-----------------ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 170 ILEVHSPE-----------------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 170 ~~~~~~~~-----------------~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
+.++..+. ...+.++++ ++++.+|++|+.||.|++||..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~---s~~~~~l~s~~~dg~v~i~~~~--------------------- 151 (388)
T d1erja_ 96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF---SPDGKFLATGAEDRLIRIWDIE--------------------- 151 (388)
T ss_dssp EEEECC-----------------CCCCBEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------
T ss_pred EeeecccccccccccccccccccCCCCCEEEEEE---CCCCCcceeccccccccccccc---------------------
Confidence 87765321 233566666 6889999999999999999998
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
..+.+..+.+|...|.++.+++++..+++++.++.+++||..+... . ....+.....
T Consensus 152 ------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~---~~~~~~~~~~ 208 (388)
T d1erja_ 152 ------------NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--------S---LTLSIEDGVT 208 (388)
T ss_dssp ------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------E---EEEECSSCEE
T ss_pred ------------ccccccccccccccccccccccccccccccccceeeeeeecccccc--------c---cccccccccc
Confidence 6778888899999999999999999999999999999999988532 2 2233344455
Q ss_pred EEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEE-------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCC
Q 001391 313 DCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI-------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 313 ~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~-------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~ 381 (1088)
++.+. +.+|++|+.||.|++|+. ++..+..+ .+|.+ +|.+++|+|++++|++|+.||.|++||+....
T Consensus 209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~ 287 (388)
T d1erja_ 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287 (388)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC-CEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence 56665 579999999999999999 66655544 35666 79999999999999999999999999995421
Q ss_pred CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEeccCCcceeEEeee
Q 001391 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQ 460 (1088)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~~~~~~~~~~~~ 460 (1088)
... ....+...........|...|.+++|+|++.+++ ++.+|.|+.|++. +.+....+.
T Consensus 288 ~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~---~~~~~~~l~ 347 (388)
T d1erja_ 288 NKS-----------------DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK---SGNPLLMLQ 347 (388)
T ss_dssp ----------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT---TCCEEEEEE
T ss_pred ccc-----------------ccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC---CCcEEEEEe
Confidence 110 0000111122333445667899999999886555 5678888865543 444334455
Q ss_pred ecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 461 VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 461 ~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
+| ..+|.++++.... ...+++.+|++|+.||.|++|+++
T Consensus 348 ~H-~~~V~~~~~~~~~--~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 348 GH-RNSVISVAVANGS--SLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CC-SSCEEEEEECSSC--TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CC-CCCEEEEEEecCc--ccCCCCCEEEEEeCCCEEEEEeee
Confidence 55 5678888765432 113567899999999999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=3.3e-27 Score=259.41 Aligned_cols=285 Identities=16% Similarity=0.249 Sum_probs=235.7
Q ss_pred CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 54 g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
....+++++|.+ .|.+++|+ |+++ .+++++.|++|+|||+.+ .+++..+.+|.+
T Consensus 7 ~~~~~~L~GH~~-~I~~l~~s-------p~~~---~l~s~s~Dg~i~iWd~~~---------------~~~~~~~~~h~~ 60 (317)
T d1vyhc1 7 PPEKYALSGHRS-PVTRVIFH-------PVFS---VMVSASEDATIKVWDYET---------------GDFERTLKGHTD 60 (317)
T ss_dssp SSCSCEEECCSS-CEEEEEEC-------SSSS---EEEEEESSSCEEEEETTT---------------CCCCEEECCCSS
T ss_pred CCccEEEcCCCC-CeEEEEEc-------CCCC---EEEEEeCCCeEEEEECCC---------------CCEEEEEeCCCC
Confidence 345578898877 79999999 7762 444445699999999985 456778889999
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.|.+++|+| ++.++++++.++.+.+|+....+....+..+... ..++.+ .+++..+++++.|+.+++||+.
T Consensus 61 ~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~d~~~~~~~~~-- 131 (317)
T d1vyhc1 61 SVQDISFDH---SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN-VSSVSI---MPNGDHIVSASRDKTIKMWEVQ-- 131 (317)
T ss_dssp CEEEEEECT---TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-EEEEEE---CSSSSEEEEEETTSEEEEEETT--
T ss_pred cEEEEeeec---cccccccccccccccccccccccccccccccccc-ceeeec---cCCCceEEeeccCcceeEeecc--
Confidence 999999999 9999999999999999999888877666555433 344444 5788999999999999999998
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
++..+..+.+|...+.+++|+|++.++++++.|+.|++|++.+.+
T Consensus 132 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~---- 176 (317)
T d1vyhc1 132 -------------------------------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE---- 176 (317)
T ss_dssp -------------------------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----
T ss_pred -------------------------------cceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce----
Confidence 677788899999999999999999999999999999999998853
Q ss_pred CCceeeeceeeeccCcceEEEEEC----------------------CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCC
Q 001391 294 DSIEEVGSSVLYGHNARVWDCCLT----------------------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1088)
Q Consensus 294 ~~~~~i~~~~~~~h~~~I~~v~~~----------------------~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~ 350 (1088)
... .+.+|...+.++.+. +.++++++.|+.|++|+. +++++..+.+|.. +
T Consensus 177 ----~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~ 249 (317)
T d1vyhc1 177 ----CKA--ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-W 249 (317)
T ss_dssp ----EEE--EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-C
T ss_pred ----eeE--EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC-C
Confidence 232 566788888888775 247899999999999999 7889999999988 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 429 (1088)
|.+++++|++++|++|+.||.|++||+.. +.+ ..+..|.+.|++++|+|
T Consensus 250 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------~~~~~h~~~V~~~~~s~ 299 (317)
T d1vyhc1 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM------------------------------KTLNAHEHFVTSLDFHK 299 (317)
T ss_dssp EEEEEECSSSSCEEEEETTTEEEEECCTTSCCC------------------------------EEEECCSSCEEEEEECS
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCcEE------------------------------EEEcCCCCCEEEEEEcC
Confidence 99999999999999999999999999853 222 22345667899999999
Q ss_pred CCe-EEEEecCCeEEEE
Q 001391 430 EDT-LYIATNHGYLYHT 445 (1088)
Q Consensus 430 ~~~-ll~~t~~g~i~~~ 445 (1088)
++. +++++.||.|..|
T Consensus 300 ~~~~l~s~s~Dg~i~iW 316 (317)
T d1vyhc1 300 TAPYVVTGSVDQTVKVW 316 (317)
T ss_dssp SSSCEEEEETTSEEEEE
T ss_pred CCCEEEEEeCCCeEEEe
Confidence 885 4555677888744
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=1.5e-27 Score=271.43 Aligned_cols=253 Identities=13% Similarity=0.106 Sum_probs=200.4
Q ss_pred eCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 63 ~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
+...+|.+++|+ ||+ .+|+++ .|+.|+||+++... ...+..+.+|.+.|.+++|+
T Consensus 5 ~~~~pIt~~~~s-------~dg----~~la~~~~~~~i~iw~~~~~~-------------~~~~~~l~gH~~~V~~l~fs 60 (371)
T d1k8kc_ 5 FLVEPISCHAWN-------KDR----TQIAICPNNHEVHIYEKSGNK-------------WVQVHELKEHNGQVTGVDWA 60 (371)
T ss_dssp SCSSCCCEEEEC-------TTS----SEEEEECSSSEEEEEEEETTE-------------EEEEEEEECCSSCEEEEEEE
T ss_pred CCCCCeEEEEEC-------CCC----CEEEEEeCCCEEEEEECCCCC-------------EEEEEEecCCCCCEEEEEEC
Confidence 334579999999 887 455554 58999999998543 56788899999999999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcCCCceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
| ++++|++|+.|++|++||+.++.....+. ......+.++.+ +|++..+++|+.|+.|++|++....
T Consensus 61 p---~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~---~p~~~~l~~~s~d~~i~i~~~~~~~------ 128 (371)
T d1k8kc_ 61 P---DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW---APNEKKFAVGSGSRVISICYFEQEN------ 128 (371)
T ss_dssp T---TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE---CTTSSEEEEEETTSSEEEEEEETTT------
T ss_pred C---CCCEEEEEECCCeEEEEeeccccccccccccccccccccccc---ccccccceeecccCcceeeeeeccc------
Confidence 9 99999999999999999998876544432 122334667776 6889999999999999999987111
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC------
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD------ 294 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~------ 294 (1088)
..........+|...|.+++|+|++++|++++.|++|++|+..........
T Consensus 129 -----------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~ 185 (371)
T d1k8kc_ 129 -----------------------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185 (371)
T ss_dssp -----------------------TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred -----------------------ccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccc
Confidence 011223345679999999999999999999999999999998765431100
Q ss_pred ----CceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 295 ----SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 295 ----~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
..+.+ ....+|...|.+++|+ +++|++++.|++|++||+ .++.+..+..|.. +|.+++|+|++.+|++ |
T Consensus 186 ~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~-g 261 (371)
T d1k8kc_ 186 SKMPFGELM--FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAA-G 261 (371)
T ss_dssp SCCCTTCEE--EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEE-E
T ss_pred ccccceeee--eeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEE-E
Confidence 01122 2567899999999998 689999999999999999 7888999999988 7999999999987765 5
Q ss_pred CCCCEEEEEcC
Q 001391 368 FDSAIKVHQFQ 378 (1088)
Q Consensus 368 ~Dg~I~iwd~~ 378 (1088)
.|+.+++|...
T Consensus 262 ~d~~~~~~~~~ 272 (371)
T d1k8kc_ 262 HDCFPVLFTYD 272 (371)
T ss_dssp TTSSCEEEEEE
T ss_pred cCCceEEEEee
Confidence 58888888774
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.2e-26 Score=255.91 Aligned_cols=306 Identities=17% Similarity=0.294 Sum_probs=233.2
Q ss_pred eeeeeE-EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEIS-ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~-~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|.++|. |++|+ +++||+|+ |++|+|||+.++++++++.+|.+ .|.+++|+ ++ .++++
T Consensus 15 H~~~V~s~~~~~--------g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~-~V~~v~~~-------~~-----~l~s~ 73 (342)
T d2ovrb2 15 HDDHVITCLQFC--------GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQMR-------DN-----IIISG 73 (342)
T ss_dssp STTSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEECCCCSS-CEEEEEEE-------TT-----EEEEE
T ss_pred cCCceEEEEEEC--------CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-CEEEEEeC-------CC-----ccccc
Confidence 556664 55555 78999988 79999999999999999998776 79999998 54 67777
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+.|+.+++|+.... ........+...+...... ...++.+..|+.+.+|+..+++....+
T Consensus 74 s~D~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~~~~~~~~~~~~~~ 133 (342)
T d2ovrb2 74 STDRTLKVWNAETG---------------ECIHTLYGHTSTVRCMHLH-----EKRVVSGSRDATLRVWDIETGQCLHVL 133 (342)
T ss_dssp ETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred eecccccccccccc---------------cceecccccceeEeeeecc-----cccccccccceeEEEeecccccceeee
Confidence 77999999998742 2333444555666666654 367888999999999999999887776
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.......... ......++.++.|+.|++||.. ....+..+.
T Consensus 134 ~~~~~~~~~~------~~~~~~~~~~~~d~~i~~~d~~---------------------------------~~~~~~~~~ 174 (342)
T d2ovrb2 134 MGHVAAVRCV------QYDGRRVVSGAYDFMVKVWDPE---------------------------------TETCLHTLQ 174 (342)
T ss_dssp ECCSSCEEEE------EECSSCEEEEETTSCEEEEEGG---------------------------------GTEEEEEEC
T ss_pred ecccccceee------ccccceeeeecCCCeEEEeecc---------------------------------cceeeEEEc
Confidence 6544332222 1345688899999999999998 677788889
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vW 333 (1088)
+|...+..+.+ ++.++++++.|+.|++||+... +.+. ...+|...+.++.+++++|++++.|+.|++|
T Consensus 175 ~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~--------~~~~--~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iw 242 (342)
T d2ovrb2 175 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG--------NCIH--TLTGHQSLTSGMELKDNILVSGNADSTVKIW 242 (342)
T ss_dssp CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC--------CEEE--EECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CcccccccccC--CCCEEEEEeCCCeEEEeecccc--------eeee--EecccccceeEEecCCCEEEEEcCCCEEEEE
Confidence 99888777665 6789999999999999999885 3443 7788999999999999999999999999999
Q ss_pred cC-CCceeEEEcccCC--CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCc
Q 001391 334 GS-DGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (1088)
Q Consensus 334 d~-~~~~~~~~~~h~~--~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1088)
|. ..+....+..+.. ..+.++.+ +++++++|+.||+|++||++. +.++++ ...
T Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~------------------~~~--- 299 (342)
T d2ovrb2 243 DIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL------------------VTL--- 299 (342)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEE------------------EEC---
T ss_pred ecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEE------------------ecc---
Confidence 99 6666777765433 14555555 457899999999999999953 222211 100
Q ss_pred cceeeccCCCCceEEEEeccCCeEEEEe-cCC
Q 001391 410 EQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHG 440 (1088)
Q Consensus 410 ~~~~~~~~~~~~V~~l~~s~~~~ll~~t-~~g 440 (1088)
...++...|.+++|+|++.+++++ .+|
T Consensus 300 ----~~~~~~~~v~~v~~s~~~~~la~g~~dG 327 (342)
T d2ovrb2 300 ----ESGGSGGVVWRIRASNTKLVCAVGSRNG 327 (342)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred ----cCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 112355679999999998777664 344
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7e-26 Score=251.87 Aligned_cols=288 Identities=18% Similarity=0.338 Sum_probs=228.0
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
|.||+|+|||+.+++ |.++|.+++|+ |+ +|++|+ |+.+++|+............... .+....
T Consensus 34 s~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~--~~------~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 104 (342)
T d2ovrb2 34 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN------IIISGSTDRTLKVWNAETGECIHTLYGHTS-TVRCMH 104 (342)
T ss_dssp ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT------EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEE
T ss_pred eCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeC--CC------ccccceecccccccccccccceecccccce-eEeeee
Confidence 579999999999987 67889999999 64 788877 89999999998877666665433 455555
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
.. +. .......|+.+.+|+..... ....+..+..... ...+ ....+++
T Consensus 105 ~~-------~~-----~~~~~~~d~~i~~~~~~~~~---------------~~~~~~~~~~~~~--~~~~---~~~~~~~ 152 (342)
T d2ovrb2 105 LH-------EK-----RVVSGSRDATLRVWDIETGQ---------------CLHVLMGHVAAVR--CVQY---DGRRVVS 152 (342)
T ss_dssp EE-------TT-----EEEEEETTSEEEEEESSSCC---------------EEEEEECCSSCEE--EEEE---CSSCEEE
T ss_pred cc-------cc-----cccccccceeEEEeeccccc---------------ceeeeecccccce--eecc---ccceeee
Confidence 54 32 66777789999999988532 3333333333322 3344 6678899
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
++.|+.|++||....+.+..+..+..... .. ..++..+++|+.||.|++||++
T Consensus 153 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~s~~~dg~i~~~d~~--------------------- 205 (342)
T d2ovrb2 153 GAYDFMVKVWDPETETCLHTLQGHTNRVY-SL-----QFDGIHVVSGSLDTSIRVWDVE--------------------- 205 (342)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSSCEE-EE-----EECSSEEEEEETTSCEEEEETT---------------------
T ss_pred ecCCCeEEEeecccceeeEEEcCcccccc-cc-----cCCCCEEEEEeCCCeEEEeecc---------------------
Confidence 99999999999999998888876654322 22 2467899999999999999998
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
..+.+..+.+|...|.++++++ +++++++.|+.|++||+...+. ...+. ....|...+.
T Consensus 206 ------------~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~-----~~~~~--~~~~~~~~~~ 264 (342)
T d2ovrb2 206 ------------TGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQC-----LQTLQ--GPNKHQSAVT 264 (342)
T ss_dssp ------------TCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCE-----EEEEC--STTSCSSCEE
T ss_pred ------------cceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccc-----ccccc--ccceeeecee
Confidence 6778888999999999988865 6999999999999999988643 22222 3456778899
Q ss_pred EEEECCCEEEEEeCCCcEEEEcC-CCceeEEEc-----ccCCCCeEEEEEcCCCCEEEEEeCCCC----EEEEEcC
Q 001391 313 DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIK-----EHIGRGIWRCLYDSLSSLLVTAGFDSA----IKVHQFQ 378 (1088)
Q Consensus 313 ~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~-----~h~~~~V~~l~~~~dg~~l~tg~~Dg~----I~iwd~~ 378 (1088)
++.++++++++|+.||+|++||+ +++.++.+. +|.+ .|++++|+|++.+|++|+.||+ |++||++
T Consensus 265 ~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~-~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG-VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC-EEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC-CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 99999999999999999999999 788888764 4555 6999999999999999999996 9999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=1.9e-26 Score=253.27 Aligned_cols=288 Identities=18% Similarity=0.230 Sum_probs=208.2
Q ss_pred eeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEc-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+.||...|++++|+ +.+|++|+.||+|++||+ +++.+..+. .|.. .|++++|+|++. +++++.|+.+++|+..
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~-~v~~v~~~~~g~-~~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT-MITGIKTTSKGD-LFTVSWDDHLKVVPAG 84 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS-CEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCC-cEEEEEeeccce-eecccceeeEEEeccC
Confidence 889999999999998 579999999999999999 778887774 5666 799999999987 5567789999999985
Q ss_pred CCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEe
Q 001391 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1088)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~ 458 (1088)
......... ....+...+.++++++++.+++++.++.+..++ ... .
T Consensus 85 ~~~~~~~~~--------------------------~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~---~~~-----~ 130 (299)
T d1nr0a2 85 GSGVDSSKA--------------------------VANKLSSQPLGLAVSADGDIAVAACYKHIAIYS---HGK-----L 130 (299)
T ss_dssp SSSSCTTSC--------------------------CEEECSSCEEEEEECTTSSCEEEEESSEEEEEE---TTE-----E
T ss_pred Ccccccccc--------------------------ccccccccccccccccccccccccccccccccc---ccc-----c
Confidence 432211110 011233468899999999988888888877443 222 1
Q ss_pred eeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEE
Q 001391 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (1088)
Q Consensus 459 ~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L 538 (1088)
..........++++.+ +++++++|+.||.|++|++.++..... .. ..+...+.. .++++++++|
T Consensus 131 ~~~~~~~~~~~~~~s~--------~~~~l~~g~~dg~i~~~d~~~~~~~~~---~~---~~~~~~i~~--~~~~~~~~~l 194 (299)
T d1nr0a2 131 TEVPISYNSSCVALSN--------DKQFVAVGGQDSKVHVYKLSGASVSEV---KT---IVHPAEITS--VAFSNNGAFL 194 (299)
T ss_dssp EEEECSSCEEEEEECT--------TSCEEEEEETTSEEEEEEEETTEEEEE---EE---EECSSCEEE--EEECTTSSEE
T ss_pred cccccccccccccccc--------ccccccccccccccccccccccccccc---cc---ccccccccc--cccccccccc
Confidence 1222334566676644 458999999999999999986543211 11 112222333 4688999999
Q ss_pred EEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccc
Q 001391 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKS 618 (1088)
Q Consensus 539 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~ 618 (1088)
++++.|+.|++||+...... ..... ...|...|++++|+|++++|++|+.||+|+||++.+...
T Consensus 195 ~~~~~d~~i~~~~~~~~~~~-----------~~~~~-~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~---- 258 (299)
T d1nr0a2 195 VATDQSRKVIPYSVANNFEL-----------AHTNS-WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD---- 258 (299)
T ss_dssp EEEETTSCEEEEEGGGTTEE-----------SCCCC-CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS----
T ss_pred cccccccccccccccccccc-----------ccccc-ccccccccccccccccccceEEEcCCCEEEEEECCCCCc----
Confidence 99999999999998754311 11112 236889999999999999999999999999999886421
Q ss_pred cccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEee
Q 001391 619 VALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (1088)
Q Consensus 619 ~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~ 670 (1088)
.+... ...|....|+.+.+. ++.+|+|+|.||.|++|++.
T Consensus 259 -------~~~~~-~~~~~~~~v~~~~~~----~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 259 -------HPIII-KGAHAMSSVNSVIWL----NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp -------CCEEE-TTSSTTSCEEEEEEE----ETTEEEEEETTSCEEEEECC
T ss_pred -------ceEEE-ecCCCCCcEEEEEEC----CCCEEEEEeCCCEEEEEecc
Confidence 11112 223333567777665 24689999999999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=3.6e-24 Score=238.24 Aligned_cols=284 Identities=18% Similarity=0.291 Sum_probs=223.8
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
+..+++++|.+ .|.+++|+ |+++ .+++++.|++|+|||+.. .+.+..+.+|...
T Consensus 46 ~~~~tL~GH~~-~I~~l~~s-------~~~~---~l~sgs~Dg~v~iWd~~~---------------~~~~~~~~~~~~~ 99 (340)
T d1tbga_ 46 RTRRTLRGHLA-KIYAMHWG-------TDSR---LLVSASQDGKLIIWDSYT---------------TNKVHAIPLRSSW 99 (340)
T ss_dssp CEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEETTTEEEEEETTT---------------TEEEEEEECSCSC
T ss_pred eeeEEECCCCC-CEEEEEEC-------CCCC---EEEEEECCCceeeeeccc---------------ceeEEEEeccccc
Confidence 56678899887 79999999 7772 444445599999999885 4677888899999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc----eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
|.+++|+| ++.++++|+.|+.+++|+..... ....+..+..... ... ...+..+.....+.....+..
T Consensus 100 v~~v~~~~---~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~ 171 (340)
T d1tbga_ 100 VMTCAYAP---SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS-CCR----FLDDNQIVTSSGDTTCALWDI 171 (340)
T ss_dssp EEEEEECT---TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEE-EEE----EEETTEEEEEETTTEEEEEET
T ss_pred EEeeEeec---cceeeeeecccceeecccccccccccccceeccccccccc-ccc----ccccccccccccccccccccc
Confidence 99999999 99999999999999999986543 3344444433222 211 123567778888898888887
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
. ..........+...+....+.+.+.++++++.|+.|++||+.++
T Consensus 172 ~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~-- 216 (340)
T d1tbga_ 172 E---------------------------------TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-- 216 (340)
T ss_dssp T---------------------------------TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--
T ss_pred c---------------------------------cccccccccccceeEeeeccccccceeEEeecCceEEEEECCCC--
Confidence 7 45556667788899999999999999999999999999999885
Q ss_pred cCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEc--ccCCCCeEEEEEcCCCCEEEE
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK--EHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~--~h~~~~V~~l~~~~dg~~l~t 365 (1088)
+.+. .+.+|...|.+++|+ +.+|++|+.||.|++|++ ..+.+..+. .+.. +|.+++|+|++++|++
T Consensus 217 ------~~~~--~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~ 287 (340)
T d1tbga_ 217 ------MCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKSGRLLLA 287 (340)
T ss_dssp ------EEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS-CEEEEEECSSSCEEEE
T ss_pred ------cEEE--EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC-ceEEEEECCCCCEEEE
Confidence 3443 778899999999998 679999999999999999 555555543 3444 6999999999999999
Q ss_pred EeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEE
Q 001391 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYH 444 (1088)
Q Consensus 366 g~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~ 444 (1088)
|+.||.|++||+... ..+..+.+|.+.|++++|+|++.+++ ++.||.|..
T Consensus 288 g~~dg~i~iwd~~~~-----------------------------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i 338 (340)
T d1tbga_ 288 GYDDFNCNVWDALKA-----------------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp EETTSCEEEEETTTC-----------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EECCCEEEEEECCCC-----------------------------cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence 999999999998531 11233455677899999999986554 567888874
Q ss_pred E
Q 001391 445 T 445 (1088)
Q Consensus 445 ~ 445 (1088)
|
T Consensus 339 W 339 (340)
T d1tbga_ 339 W 339 (340)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=8e-25 Score=243.81 Aligned_cols=288 Identities=14% Similarity=0.127 Sum_probs=212.6
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCe--EEEEECCCC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQ--VLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~--I~vwd~~tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+.+++++|+ |+ +..|+.+.+.. |+.||.... ..+..+.+|+...|.+++|+|. .++ .+|++
T Consensus 18 ~~~t~l~~~--~~----~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~-----~~g----~~las 82 (325)
T d1pgua1 18 NFTTHLSYD--PT----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI-----KGS----QYLCS 82 (325)
T ss_dssp TCCCCCEEE--TT----TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSS-----TTC----CEEEE
T ss_pred CCeEEEEEC--CC----CCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeC-----CCC----CEEEE
Confidence 457899999 98 88898888654 555664433 4566777877768999999964 455 56655
Q ss_pred E-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCceE
Q 001391 94 F-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSII 170 (1088)
Q Consensus 94 ~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~~ 170 (1088)
+ .|++|+|||+....... .........+..|.+.|.+++|+| ++++|++++. ++.+++|+..+++.+
T Consensus 83 gs~Dg~i~iWd~~~~~~~~-------~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (325)
T d1pgua1 83 GDESGKVIVWGWTFDKESN-------SVEVNVKSEFQVLAGPISDISWDF---EGRRLCVVGEGRDNFGVFISWDSGNSL 152 (325)
T ss_dssp EETTSEEEEEEEEEEGGGT-------EEEEEEEEEEECCSSCEEEEEECT---TSSEEEEEECCSSCSEEEEETTTCCEE
T ss_pred EeCCCCEEEeeecCCccee-------eeecccccccccccCcEEEEEECC---CCCccceeeccccceEEEEeecccccc
Confidence 4 59999999997533100 011222344567899999999999 9998887764 778999999999999
Q ss_pred EEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
..+..+... +.++.+ ++++ ..+++++.|+.|++||.. ..+..
T Consensus 153 ~~~~~h~~~-v~~~~~---~~~~~~~~~~~~~d~~v~~~d~~---------------------------------~~~~~ 195 (325)
T d1pgua1 153 GEVSGHSQR-INACHL---KQSRPMRSMTVGDDGSVVFYQGP---------------------------------PFKFS 195 (325)
T ss_dssp EECCSCSSC-EEEEEE---CSSSSCEEEEEETTTEEEEEETT---------------------------------TBEEE
T ss_pred eeeeecccc-cccccc---cccccceEEEeeccccccccccc---------------------------------ccccc
Confidence 888766543 556666 3444 457889999999999987 33333
Q ss_pred EE---EeCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce----EEEEEC-CCE
Q 001391 250 FR---LVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV----WDCCLT-DSF 320 (1088)
Q Consensus 250 ~~---~~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I----~~v~~~-~~~ 320 (1088)
.. ..+|...|.+++|+|+ +.++++++.|+.|++||+.+++ .+. .+.+|...+ +++.+. +.+
T Consensus 196 ~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--------~~~--~l~~~~~~v~~~~~s~~~~dg~~ 265 (325)
T d1pgua1 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--------FLK--YIEDDQEPVQGGIFALSWLDSQK 265 (325)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--------EEE--ECCBTTBCCCSCEEEEEESSSSE
T ss_pred eecccccCCCCccEEeeeccccceeccccccccceeeeeecccc--------ccc--cccccccccccceeeeeccCCCE
Confidence 33 3467888999999996 6889999999999999998853 333 566666654 556665 679
Q ss_pred EEEEeCCCcEEEEcC-CCceeEEEcccCCC-CeEEEEEcCC-CCEEEEEeCCCCEEEEEc
Q 001391 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGR-GIWRCLYDSL-SSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~-~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~ 377 (1088)
|++++.|++|+|||+ +++++..+..|... .+..+++.+. +.+|++++.||.|++||+
T Consensus 266 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 999999999999999 78888887766541 2334444332 347899999999999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.3e-23 Score=227.62 Aligned_cols=266 Identities=19% Similarity=0.289 Sum_probs=206.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+...|+|++|+ +++||+|+ |++|+|||+.++++++++.+|.+ .|.+++|. +. .+++++
T Consensus 14 ~~~~V~c~~~d--------~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~-~V~~v~~~-------~~-----~l~s~s 72 (293)
T d1p22a2 14 TSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYD-------ER-----VIITGS 72 (293)
T ss_dssp SCCCEEEEECC--------SSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEECC-------SS-----EEEEEE
T ss_pred CCCCEEEEEEc--------CCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEeeeecc-------cc-----eeeccc
Confidence 45678887655 78999988 79999999999999999998777 79998875 32 566666
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE---E
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII---L 171 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~---~ 171 (1088)
.|+.|++|++.... .......+.... ..+.+ ....++++..++.+++|+....... .
T Consensus 73 ~D~~i~~~~~~~~~---------------~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T d1p22a2 73 SDSTVRVWDVNTGE---------------MLNTLIHHCEAV--LHLRF---NNGMMVTCSKDRSIAVWDMASPTDITLRR 132 (293)
T ss_dssp TTSCEEEEESSSCC---------------EEEEECCCCSCE--EEEEC---CTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred cccccccccccccc---------------cccccccccccc--ccccc---cccceeecccccceeEeeccccccccccc
Confidence 79999999998533 222222333332 23444 5678899999999999999876542 2
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
.+..+.. .+.... .....+++++.|+.|++||.. +.+.+..
T Consensus 133 ~~~~~~~-~v~~~~-----~~~~~~~~~s~d~~i~~~d~~---------------------------------~~~~~~~ 173 (293)
T d1p22a2 133 VLVGHRA-AVNVVD-----FDDKYIVSASGDRTIKVWNTS---------------------------------TCEFVRT 173 (293)
T ss_dssp EECCCSS-CEEEEE-----EETTEEEEEETTSEEEEEETT---------------------------------TCCEEEE
T ss_pred ccccccc-ccccce-----ecccccccccCCCceeeecCC---------------------------------CCcEEEE
Confidence 2233332 233333 245678899999999999998 6778888
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEE
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~ 331 (1088)
+.+|...|..+.++ +.++++++.|+.|++||+.+. ..+. ...+|...+..+...+.+|++|+.||.|+
T Consensus 174 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~~~~--~~~~~~~~v~~~~~~~~~l~sg~~dg~i~ 241 (293)
T d1p22a2 174 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG--------ACLR--VLEGHEELVRCIRFDNKRIVSGAYDGKIK 241 (293)
T ss_dssp EECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------CEEE--EECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EcccccccccccCC--CCeEEEecCCCEEEEEecccc--------eeee--eecccceeeeeccccceEEEEEcCCCEEE
Confidence 99999999988875 568999999999999999885 3343 66788888888877789999999999999
Q ss_pred EEcCC----------CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 332 VWGSD----------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 332 vWd~~----------~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+||+. ...+..+.+|.+ +|++++|+ +.+|++|+.||+|++||
T Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~H~~-~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 242 VWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEECCCCccccccCCceeeEEecCCCC-CEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 99961 246788999998 69999985 56799999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=6.4e-24 Score=236.43 Aligned_cols=286 Identities=17% Similarity=0.120 Sum_probs=204.6
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~ 145 (1088)
.+.+++|+ |++ ..++++.++.+.++.+..... .......+.+|. ..|++++|+| ..
T Consensus 19 ~~t~l~~~-------~~~----~~la~~~~~~~~i~~~~~~~~-----------~~~~~~~~~gh~~~~v~~v~fsP-~~ 75 (325)
T d1pgua1 19 FTTHLSYD-------PTT----NAIAYPCGKSAFVRCLDDGDS-----------KVPPVVQFTGHGSSVVTTVKFSP-IK 75 (325)
T ss_dssp CCCCCEEE-------TTT----TEEEEEETTEEEEEECCSSCC-----------SSCSEEEECTTTTSCEEEEEECS-ST
T ss_pred CeEEEEEC-------CCC----CEEEEEeCCCEEEEEEeCCCC-----------CccceEEEeCCCCCCEEEEEEee-CC
Confidence 46788888 776 455555444444444432110 134566677875 6899999998 22
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEec-------cCCceeEEEEeeecCCCCCcEEEEEe--cCCeEEEEEeccCccc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVH-------SPERCLLYSMKLWGDNLEALRIASGT--IYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~-------~~~~~~~~s~~~~~~s~~~~~l~sg~--~dg~I~vwd~~~~~~~ 216 (1088)
++.+||+|+.||+|+|||+..++....+. ......+.++++ ++++..+++++ .++.+++|++.
T Consensus 76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---s~~~~~l~~~~~~~~~~~~~~~~~----- 147 (325)
T d1pgua1 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW---DFEGRRLCVVGEGRDNFGVFISWD----- 147 (325)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE---CTTSSEEEEEECCSSCSEEEEETT-----
T ss_pred CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEE---CCCCCccceeeccccceEEEEeec-----
Confidence 56799999999999999997654322211 112233556666 57788877665 46789999998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCcccCCCC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDS 295 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~iWd~~~~~~~~~~~ 295 (1088)
+++.+..+.+|...|.+++|+|++++ +++++.|+.+++|+....+.
T Consensus 148 ----------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~----- 194 (325)
T d1pgua1 148 ----------------------------SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF----- 194 (325)
T ss_dssp ----------------------------TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-----
T ss_pred ----------------------------ccccceeeeecccccccccccccccceEEEeeccccccccccccccc-----
Confidence 67788889999999999999999875 78899999999999887543
Q ss_pred ceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEc---CCCCEEEEEeC
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD---SLSSLLVTAGF 368 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~---~dg~~l~tg~~ 368 (1088)
..... ...+|...|.+++|+ +.+|++++.|+.|++||. +++.+..+.+|.. ++.++.|+ |++++|++++.
T Consensus 195 ~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~ 271 (325)
T d1pgua1 195 SASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGA 271 (325)
T ss_dssp EEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEET
T ss_pred ceecc--cccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc-ccccceeeeeccCCCEEEEEeC
Confidence 12221 456788899999998 478999999999999999 8888999998876 46555544 68899999999
Q ss_pred CCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCc--eEEEEeccCCeEEEEecCCeEEEE
Q 001391 369 DSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEY--VRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 369 Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
|+.|+|||++. +.++.+..+. +... ..++.+.+++.+++++.+|.|..|
T Consensus 272 D~~i~iwd~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~l~s~s~dg~i~vw 323 (325)
T d1pgua1 272 DATIRVWDVTTSKCVQKWTLDK----------------------------QQLGNQQVGVVATGNGRIISLSLDGTLNFY 323 (325)
T ss_dssp TSEEEEEETTTTEEEEEEECCT----------------------------TCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCeEEEEECCCCCEEEEEEecC----------------------------CcccCeEEEEEECCCCEEEEEECCCEEEEE
Confidence 99999999954 2222221111 1111 234455667788888889999866
Q ss_pred Ee
Q 001391 446 KL 447 (1088)
Q Consensus 446 ~~ 447 (1088)
++
T Consensus 324 dl 325 (325)
T d1pgua1 324 EL 325 (325)
T ss_dssp ET
T ss_pred EC
Confidence 53
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.9e-24 Score=231.07 Aligned_cols=258 Identities=15% Similarity=0.134 Sum_probs=201.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++|+|+ | |++|+ ||+|++||+.++. +.|.. .|.+++++ +++ .+++++
T Consensus 12 H~~~I~~l~~s--~--------l~sgs~Dg~v~~Wd~~~~~-----~~h~~-~V~~~~~~-------~~~----~~~s~s 64 (287)
T d1pgua2 12 HNKGITALTVN--P--------LISGSYDGRIMEWSSSSMH-----QDHSN-LIVSLDNS-------KAQ----EYSSIS 64 (287)
T ss_dssp CSSCEEEEETT--T--------TEEEETTSCEEETTTTEEE-----CCCCS-CEEEEECC-------STT----CCEEEE
T ss_pred CCCceEEEEEC--c--------EEEEeCCCeEEEEECCCCC-----CCCCC-CEEEEEec-------CCC----eEEEEe
Confidence 67999999999 3 56666 8999999987643 34444 79999998 554 566667
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+++++|++.... +...+.++++++ ++..++++ .++.+.+|+..+++.+..+.
T Consensus 65 ~D~~v~~w~~~~~~----------------------~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 118 (287)
T d1pgua2 65 WDDTLKVNGITKHE----------------------FGSQPKVASANN---DGFTAVLT-NDDDLLILQSFTGDIIKSVR 118 (287)
T ss_dssp TTTEEEETTEEEEE----------------------CSSCEEEEEECS---SSEEEEEE-TTSEEEEEETTTCCEEEEEE
T ss_pred eccccccccccccc----------------------cccceeeeeecc---CCceEEEe-ecccceeeeccceeeeeecc
Confidence 79999999987421 224567888887 77766655 57789999999999888876
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL- 252 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (1088)
........ .+++..+++++.+ +.+++|++. .......+
T Consensus 119 ~~~~~~~~-------~~~~~~~~v~~~~~~~v~~~~~~---------------------------------~~~~~~~~~ 158 (287)
T d1pgua2 119 LNSPGSAV-------SLSQNYVAVGLEEGNTIQVFKLS---------------------------------DLEVSFDLK 158 (287)
T ss_dssp CSSCEEEE-------EECSSEEEEEETTTSCEEEEETT---------------------------------EEEEEEECS
T ss_pred ccceeeee-------eccCcceeeeccccceeeeeecc---------------------------------ccceeeeee
Confidence 55443222 2456677777766 579999987 33333333
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC------------CCE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------------DSF 320 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~------------~~~ 320 (1088)
..|.+.|.+++|+|++++|++++.||.|++||+.++. ... ....+|..+|.+++|+ +.+
T Consensus 159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--------~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~ 229 (287)
T d1pgua2 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--------VKT-SRWAFRTSKINAISWKPAEKGANEEEIEEDL 229 (287)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEE-CCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred eccCCceeEEEeccCccccccccccccccceeecccc--------ccc-ccccccccccceeeecccccccccccCCCCe
Confidence 3578899999999999999999999999999998853 222 1567899999999986 258
Q ss_pred EEEEeCCCcEEEEcC-C-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 321 IITAGEDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~-~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|++|+.|++|++||+ . ++.+..+.+|.+ +|++++|+|++ .|+++|.||.|++|++
T Consensus 230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred eEeecCCCeEEEEECCCCCeEEEEeCCCCC-CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 999999999999998 3 567777889998 79999999986 6899999999999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=3.5e-23 Score=237.03 Aligned_cols=297 Identities=13% Similarity=0.090 Sum_probs=189.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCee------EEEEeeeCCcceEEEEecccccccCCCcccee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL------IRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~------~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
|.++|.+|+++ .++|++|+ |++|+|||..+... ......+.. .++.+..... ....... .
T Consensus 13 H~~~I~~v~~~--------~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~---~ 79 (393)
T d1sq9a_ 13 HDADIFSVSAC--------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-GLHHVDVLQA-IERDAFE---L 79 (393)
T ss_dssp SSSCEEEEEEC--------SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT-CEEEEEEEEE-EETTTEE---E
T ss_pred ccCccEEEEEe--------CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccC-CceEeeeEee-eccCCCC---C
Confidence 78999999998 45888887 79999999876531 122222222 3444433211 0001111 1
Q ss_pred eEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccce--eeeccCCCCcEEEEEEeccc--CCCCEEEEEEcCCcEEEEE
Q 001391 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSL--VQSLPRLSHWVFDVCFLKVC--NGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 89 ~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~--~~~l~~h~~~I~~v~f~p~~--~d~~~lasgs~Dg~V~iWd 163 (1088)
.++++.+ |+.|++|++......... .... ......+...++.+++.+.. ..+.++++++.|+++++|+
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~ 152 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKV-------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCE-------EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred cEEEEEeCCCcEEEEEccCCCceeee-------eccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence 3444444 999999998754311100 0001 11122355678888887721 1246889999999999999
Q ss_pred cCCCce---------------EEEec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 164 ISNSSI---------------ILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 164 ~~~~~~---------------~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
+..... ..... ......+.++++ ++++ +||+|+.||+|++||+.+.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---s~dg-~lasgs~Dg~i~iwd~~~~~~~~--------- 219 (393)
T d1sq9a_ 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI---SERG-LIATGFNNGTVQISELSTLRPLY--------- 219 (393)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE---CTTS-EEEEECTTSEEEEEETTTTEEEE---------
T ss_pred eecCCcccceeeeeeccceecccceecccCCCCcEEEEEE---CCCC-EEEEEeCCCcEEEEeeccccccc---------
Confidence 853210 11111 112233445555 5666 88999999999999998221110
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc---EEEEEcCCCcccCCCC-----cee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS---ARIWEVRAEYWKDSDS-----IEE 298 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~---v~iWd~~~~~~~~~~~-----~~~ 298 (1088)
.......+.+|...|.+++|+|+|++|++++.|++ |++||+.+++...... ...
T Consensus 220 ------------------~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~ 281 (393)
T d1sq9a_ 220 ------------------NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 281 (393)
T ss_dssp ------------------EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred ------------------ccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccc
Confidence 12223345689999999999999999999999975 8999998865411000 011
Q ss_pred eeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeE----EEEEcCCCCEEEEE
Q 001391 299 VGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW----RCLYDSLSSLLVTA 366 (1088)
Q Consensus 299 i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~----~l~~~~dg~~l~tg 366 (1088)
. ..+.+|...|++++|+ +.+|+||+.|++|++||+ +|+++.++++|.+ .|. .++|+|++..++++
T Consensus 282 ~--~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~-~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 282 S--LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD-DIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp ----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG-GCSSGGGCCCBCTTSCBCSSC
T ss_pred e--eeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC-cccCCccEEEECCCCCEEEEc
Confidence 1 2456899999999998 579999999999999999 8999999999976 343 35666766665544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=9.7e-24 Score=233.82 Aligned_cols=313 Identities=12% Similarity=0.014 Sum_probs=205.5
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEE
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA 324 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg 324 (1088)
.++...+|++.|++|+|+|++++|++++.|++|++||+..... ...+. ...+|...|.+++|+ +.+|++|
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-----~~~~~--~~~~h~~~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----NVDLL--QSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----EEEEE--EEEECSSCEEEEEEEESSSEEEEEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-----ceEEE--EecCCCCCEEEEEEeCCCCCEEEEc
Confidence 4555679999999999999999999999999999999987543 22222 556899999999997 3589999
Q ss_pred eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEe
Q 001391 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1088)
+.||++++|+. .+........+.........+.++...+++++.|+.+++||++.....
T Consensus 76 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~-------------------- 135 (342)
T d1yfqa_ 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG-------------------- 135 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB--------------------
T ss_pred ccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccc--------------------
Confidence 99999999999 455555555554434556667778889999999999999998421000
Q ss_pred eeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCC
Q 001391 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGI 483 (1088)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~ 483 (1088)
.......... .. ........+. ..
T Consensus 136 ----------------------------~~~~~~~~~~-------~~-----------~~~~~~~~~~----------~~ 159 (342)
T d1yfqa_ 136 ----------------------------VIAVKNLNSN-------NT-----------KVKNKIFTMD----------TN 159 (342)
T ss_dssp ----------------------------CEEEEESCSS-------SS-----------SSCCCEEEEE----------EC
T ss_pred ----------------------------eeeecccccc-------cc-----------cceeeeeeee----------cc
Confidence 0000000000 00 0000011111 12
Q ss_pred CCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccC
Q 001391 484 DDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYES 563 (1088)
Q Consensus 484 ~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~ 563 (1088)
.+.+++++.|+.|++|++............ ....... .....++.++..+++++.||.+.+|++.........
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~-- 232 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEE----SGLKYQI-RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS-- 232 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEEE----CSCSSCE-EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC--
T ss_pred CCceeeecCCCcEEEEecccCcccceeeee----cccccce-eeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec--
Confidence 368899999999999999876543322211 1111112 122334567888999999999999998754322111
Q ss_pred Ccccceeeeee--eccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccccccccee
Q 001391 564 SKTNNVFLVAE--FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (1088)
Q Consensus 564 ~~~~~~~l~~~--~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vt 641 (1088)
........... ....|...|++++|+|++++||+|+.||+|+|||+.+... +..+..+|. ++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~-------------l~~~~~~~~---~~ 296 (342)
T d1yfqa_ 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-------------IKNFAKFNE---DS 296 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-------------EEECCCCSS---SE
T ss_pred cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE-------------EEEecCCCC---CE
Confidence 01111111111 1236778899999999999999999999999999986421 233333443 44
Q ss_pred EEEEEeccCCceEEEEecCCCeEEEEEe
Q 001391 642 TLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 642 sv~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
.++|+ +++.+|++++.|+.+++|..
T Consensus 297 ~~~~s---~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 297 VVKIA---CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEE---ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEE---eCCCEEEEEEcCCcEEEeee
Confidence 45555 34578888888988888764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.1e-23 Score=222.85 Aligned_cols=253 Identities=17% Similarity=0.305 Sum_probs=199.5
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
|.||+|+|||+.+++ |.++|++|+|. +++|++|+ |+.|++|++.++........... ......
T Consensus 32 s~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--------~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (293)
T d1p22a2 32 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--------ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-AVLHLR 102 (293)
T ss_dssp ESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--------SSEEEEEETTSCEEEEESSSCCEEEEECCCCS-CEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEecCCCCEeeeecc--------cceeeccccccccccccccccccccccccccc-cccccc
Confidence 579999999999987 67889999887 56899888 79999999999988777665443 222222
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
. ..+ .++++..++.+++|+..... .......+..|...|.++.+.+ ..+++
T Consensus 103 ~--------~~~----~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~-----~~~~~ 153 (293)
T d1p22a2 103 F--------NNG----MMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDFDD-----KYIVS 153 (293)
T ss_dssp C--------CTT----EEEEEETTSCEEEEECSSSS------------CCEEEEEECCCSSCEEEEEEET-----TEEEE
T ss_pred c--------ccc----ceeecccccceeEeeccccc------------cccccccccccccccccceecc-----ccccc
Confidence 2 232 67777889999999988543 2345566778999999888865 67889
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
++.|+.|++||+.+++.+..+..+.... ..+. .++..+++++.||.|++||++
T Consensus 154 ~s~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~-----~~~~~l~~~~~dg~i~i~d~~--------------------- 206 (293)
T d1p22a2 154 ASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACLQ-----YRDRLVVSGSSDNTIRLWDIE--------------------- 206 (293)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCE-EEEE-----EETTEEEEEETTSCEEEEETT---------------------
T ss_pred ccCCCceeeecCCCCcEEEEEccccccc-cccc-----CCCCeEEEecCCCEEEEEecc---------------------
Confidence 9999999999999999988887665543 2332 346789999999999999998
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC-CCceeeeceeeeccCcce
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-DSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~-~~~~~i~~~~~~~h~~~I 311 (1088)
....+..+.+|...|.. +++++.+|++++.||.|++||+........ .....+. .+.+|...|
T Consensus 207 ------------~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~H~~~V 270 (293)
T d1p22a2 207 ------------CGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR--TLVEHSGRV 270 (293)
T ss_dssp ------------TCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE--EECCCSSCC
T ss_pred ------------cceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeE--EecCCCCCE
Confidence 67778888899998876 456788999999999999999876432111 1123343 788999999
Q ss_pred EEEEECCCEEEEEeCCCcEEEEc
Q 001391 312 WDCCLTDSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 312 ~~v~~~~~~l~sg~~Dg~i~vWd 334 (1088)
++++|++.+|+||+.||+|++||
T Consensus 271 ~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 271 FRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CCEEECSSCEEECCSSSEEEEEC
T ss_pred EEEEEcCCEEEEEecCCEEEEeC
Confidence 99999999999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=6.4e-23 Score=234.77 Aligned_cols=286 Identities=11% Similarity=0.092 Sum_probs=183.3
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
.++|.+ .|.+++++ ++ .++.+++|++|+|||........ ..........|...+..+.
T Consensus 10 ~~~H~~-~I~~v~~~-------~~-----~l~S~S~D~~iriWd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 67 (393)
T d1sq9a_ 10 GKAHDA-DIFSVSAC-------NS-----FTVSCSGDGYLKVWDNKLLDNEN---------PKDKSYSHFVHKSGLHHVD 67 (393)
T ss_dssp SSCSSS-CEEEEEEC-------SS-----EEEEEETTSEEEEEESBCCTTCC---------GGGGEEEEECCTTCEEEEE
T ss_pred CCcccC-ccEEEEEe-------CC-----EEEEEECCCeEEEEECCCCCCCc---------ccceeEeeeeccCCceEee
Confidence 346666 79999987 43 77888889999999987543100 1222223334544443333
Q ss_pred Ee---ccc-CCCCEEEEEEcCCcEEEEEcCCCceE---E--Eecc----CCceeEEEEeeecC--CCCCcEEEEEecCCe
Q 001391 140 FL---KVC-NGNRSLAIGCSDNSIRVWDISNSSII---L--EVHS----PERCLLYSMKLWGD--NLEALRIASGTIYNE 204 (1088)
Q Consensus 140 f~---p~~-~d~~~lasgs~Dg~V~iWd~~~~~~~---~--~~~~----~~~~~~~s~~~~~~--s~~~~~l~sg~~dg~ 204 (1088)
.. +.+ .++.++++++.||.|++|++...... . .... ......+++.+... ...+.++++++.||.
T Consensus 68 ~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 147 (393)
T d1sq9a_ 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147 (393)
T ss_dssp EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC
T ss_pred eEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCc
Confidence 21 100 12347889999999999998644321 1 1110 11122444443322 234578999999999
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
|++|++.......... .. ....... ..........+...+.+++|+|++ +|++|+.|++|++||
T Consensus 148 i~vw~~~~~~~~~~~~-------~~--~~~~~~~------~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd 211 (393)
T d1sq9a_ 148 TYIWKFHPFADESNSL-------TL--NWSPTLE------LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE 211 (393)
T ss_dssp EEEEEEESSSSHHHHT-------TT--CCCCEEE------EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred EEEEEeecCCccccee-------ee--eecccee------cccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEe
Confidence 9999986211100000 00 0000000 001111223456678999999997 899999999999999
Q ss_pred cCCCcccCCCCceeeec-eeeeccCcceEEEEEC--CCEEEEEeCCCc---EEEEcC-CCceeEEEc-------------
Q 001391 285 VRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCT---CRVWGS-DGKQLKMIK------------- 344 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~-~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~---i~vWd~-~~~~~~~~~------------- 344 (1088)
+.+++. ...+.. ..+.+|...|.+++|+ +.+|++|+.|++ |++||+ .++.+..+.
T Consensus 212 ~~~~~~-----~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~ 286 (393)
T d1sq9a_ 212 LSTLRP-----LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 286 (393)
T ss_dssp TTTTEE-----EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred eccccc-----ccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeee
Confidence 988643 222211 2567899999999998 689999999975 899999 777776664
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC-CCCCCcccCCc
Q 001391 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHP 389 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~-~~~~~~~~~~~ 389 (1088)
+|.+ .|++++|+|++++|++|+.|++|++||++ +++++++++|.
T Consensus 287 gH~~-~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~ 331 (393)
T d1sq9a_ 287 AHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331 (393)
T ss_dssp SBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred cccC-ceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence 6888 69999999999999999999999999994 45556666665
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=8.2e-22 Score=218.04 Aligned_cols=291 Identities=14% Similarity=0.057 Sum_probs=201.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEE---eeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF---QVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~---~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|...|++|+|+ |+ +++||+|+ |++|+|||+.++.....+ ..|.. .|.+++|+ |++. .++
T Consensus 10 h~d~I~~l~fs--p~----~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~-~V~~v~f~-------~~~~---~~l 72 (342)
T d1yfqa_ 10 PKDYISDIKII--PS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFI-------DNTD---LQI 72 (342)
T ss_dssp CSSCEEEEEEE--GG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-CEEEEEEE-------ESSS---EEE
T ss_pred CCCCEEEEEEe--CC----CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCC-CEEEEEEe-------CCCC---CEE
Confidence 45789999999 99 89999988 899999999776443332 23444 79999999 4431 455
Q ss_pred EEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 92 ALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 92 a~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
+++ .|+.|++|++.... ........+........+.+ +...+++++.|+++++||+..+...
T Consensus 73 ~sg~~d~~v~~w~~~~~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~wd~~~~~~~ 135 (342)
T d1yfqa_ 73 YVGTVQGEILKVDLIGSP--------------SFQALTNNEANLGICRICKY---GDDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp EEEETTSCEEEECSSSSS--------------SEEECBSCCCCSCEEEEEEE---TTTEEEEEETTSEEEEECHHHHTTB
T ss_pred EEcccccceeeeeccccc--------------cccccccccccccccccccc---ccccccccccccccceeeccccccc
Confidence 554 59999999998543 12222223334445555666 7889999999999999998654332
Q ss_pred ----EEeccCC---ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 171 ----LEVHSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 171 ----~~~~~~~---~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
....... ....+.+ .+.+..+++++.|+.|++|++...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~i~~~~~~~~~----------------------------- 181 (342)
T d1yfqa_ 136 VIAVKNLNSNNTKVKNKIFTM-----DTNSSRLIVGMNNSQVQWFRLPLCE----------------------------- 181 (342)
T ss_dssp CEEEEESCSSSSSSCCCEEEE-----EECSSEEEEEESTTEEEEEESSCCT-----------------------------
T ss_pred eeeecccccccccceeeeeee-----eccCCceeeecCCCcEEEEecccCc-----------------------------
Confidence 2221111 1111222 2457789999999999999987221
Q ss_pred cceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCc-eeee----ceeeeccCcceEEEEEC
Q 001391 244 HTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSI-EEVG----SSVLYGHNARVWDCCLT 317 (1088)
Q Consensus 244 ~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~i~----~~~~~~h~~~I~~v~~~ 317 (1088)
..........+...+.+..+.+ ++..+++++.|+.+.+|+............ .... .....+|...|.+++|+
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 260 (342)
T d1yfqa_ 182 -DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp -TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred -ccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEec
Confidence 1122233345556666666654 678899999999999999876543111100 1110 01334677789999998
Q ss_pred --CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 318 --DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 318 --~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+.+|++|+.||+|++||+ +++.+..+..+.. +..++|+|++++|++++.|+++++|..
T Consensus 261 p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~--~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--DSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--SEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCccEEEEECCCCEEEEEECCCCcEEEEecCCCC--CEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 589999999999999999 7788888765543 567788899999999999999888866
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=5.7e-22 Score=215.70 Aligned_cols=244 Identities=15% Similarity=0.215 Sum_probs=189.2
Q ss_pred CCCCCceEEecCCCc--eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccc
Q 001391 1 MGKKDLSEWRLDVGQ--YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~--~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~ 78 (1088)
|.||+|++||+.++. |...|.+++|+ ++ ..++.++.|++|++|++.+.+ +.. .+..+.++
T Consensus 28 s~Dg~v~~Wd~~~~~~~h~~~V~~~~~~--~~----~~~~s~s~D~~v~~w~~~~~~-------~~~-~~~~~~~~---- 89 (287)
T d1pgua2 28 SYDGRIMEWSSSSMHQDHSNLIVSLDNS--KA----QEYSSISWDDTLKVNGITKHE-------FGS-QPKVASAN---- 89 (287)
T ss_dssp ETTSCEEETTTTEEECCCCSCEEEEECC--ST----TCCEEEETTTEEEETTEEEEE-------CSS-CEEEEEEC----
T ss_pred eCCCeEEEEECCCCCCCCCCCEEEEEec--CC----CeEEEEeeccccccccccccc-------ccc-ceeeeeec----
Confidence 579999999999876 77889999999 77 555554558999999975422 122 46677777
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN- 157 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg- 157 (1088)
+++ ..++++.++.+.+|+.... +.+..+..+ .. ..+++| ++..+++++.|+
T Consensus 90 ---~~~----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~--~~~~~~---~~~~~~v~~~~~~ 141 (287)
T d1pgua2 90 ---NDG----FTAVLTNDDDLLILQSFTG---------------DIIKSVRLN-SP--GSAVSL---SQNYVAVGLEEGN 141 (287)
T ss_dssp ---SSS----EEEEEETTSEEEEEETTTC---------------CEEEEEECS-SC--EEEEEE---CSSEEEEEETTTS
T ss_pred ---cCC----ceEEEeecccceeeeccce---------------eeeeecccc-ce--eeeeec---cCcceeeeccccc
Confidence 676 7788888999999987743 334444332 22 345677 778888888765
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
.+++|++...+....+..+....+.++++ ++++.+|++|+.||.|++||+.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~g~~dg~i~i~d~~-------------------------- 192 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISI---SPSETYIAAGDVMGKILLYDLQ-------------------------- 192 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETT--------------------------
T ss_pred eeeeeeccccceeeeeeeccCCceeEEEe---ccCccccccccccccccceeec--------------------------
Confidence 79999998777777776666666777776 7889999999999999999998
Q ss_pred Eecccccceeee-EEEeCCCCCEEEEEEcCC----------CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 238 KLQDQQHTAVNL-FRLVGHEGSIFRIEWSSC----------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 238 ~~~~~~~~~~~~-~~~~gh~~~V~~v~~sp~----------g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
..... ..+.+|...|.+++|+|. +.++++++.|++|++||+.... +.+. .+.+
T Consensus 193 -------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-------~~~~--~~~~ 256 (287)
T d1pgua2 193 -------SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-------KIIK--ALNA 256 (287)
T ss_dssp -------TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-------CCEE--ETTS
T ss_pred -------ccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-------eEEE--EeCC
Confidence 33322 235689999999999874 4689999999999999997642 2333 6678
Q ss_pred cCcceEEEEEC-CCEEEEEeCCCcEEEEcC
Q 001391 307 HNARVWDCCLT-DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 307 h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~ 335 (1088)
|...|++++|+ +..|++++.|++|++|++
T Consensus 257 h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 257 HKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp STTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 99999999998 678999999999999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=1.3e-21 Score=219.64 Aligned_cols=279 Identities=9% Similarity=0.060 Sum_probs=201.7
Q ss_pred EEEEEeccC-CCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC--C
Q 001391 21 SALCFVHLP-SHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE--K 97 (1088)
Q Consensus 21 ~~v~fs~~p-d~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd--~ 97 (1088)
.+-.|| | | |+++|+++++.|+|||..+++.+.. . +..+|.+++|+ |||+ .++.++.+ .
T Consensus 6 ~~~~fS--P~d----G~~~a~~~~g~v~v~d~~~~~~~~~--~-~~~~v~~~~~s-------pDg~---~l~~~~~~~g~ 66 (360)
T d1k32a3 6 FAEDFS--PLD----GDLIAFVSRGQAFIQDVSGTYVLKV--P-EPLRIRYVRRG-------GDTK---VAFIHGTREGD 66 (360)
T ss_dssp GEEEEE--ECG----GGCEEEEETTEEEEECTTSSBEEEC--S-CCSCEEEEEEC-------SSSE---EEEEEEETTEE
T ss_pred hccccc--CCC----CCEEEEEECCeEEEEECCCCcEEEc--c-CCCCEEEEEEC-------CCCC---EEEEEEcCCCC
Confidence 456799 9 8 9999999999999999998877653 3 44589999999 8883 44444443 4
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
.|++|+++.+ ....+..|...|.+++|+| ++++|++++.++.+++|++.+++....+..+.
T Consensus 67 ~v~v~d~~~~----------------~~~~~~~~~~~v~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
T d1k32a3 67 FLGIYDYRTG----------------KAEKFEENLGNVFAMGVDR---NGKFAVVANDRFEIMTVDLETGKPTVIERSRE 127 (360)
T ss_dssp EEEEEETTTC----------------CEEECCCCCCSEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEECCCC----------------cEEEeeCCCceEEeeeecc---cccccceeccccccccccccccceeeeeeccc
Confidence 7999998853 3445678999999999999 99999999999999999999998877766544
Q ss_pred ceeEEEEeeecCCCCCcEEEEEe----------cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 178 RCLLYSMKLWGDNLEALRIASGT----------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~----------~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
. ...++++ ++++.+|+.+. .++.+++|+.. .++
T Consensus 128 ~-~~~~~~~---spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~---------------------------------~~~ 170 (360)
T d1k32a3 128 A-MITDFTI---SDNSRFIAYGFPLKHGETDGYVMQAIHVYDME---------------------------------GRK 170 (360)
T ss_dssp S-CCCCEEE---CTTSCEEEEEEEECSSTTCSCCEEEEEEEETT---------------------------------TTE
T ss_pred c-cccchhh---ccceeeeeeeccccccceeeccccceeeeccc---------------------------------cCc
Confidence 3 2333444 68888888543 34568888887 333
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCce------------------------------
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE------------------------------ 297 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~------------------------------ 297 (1088)
...+..|...+..++|+|+|++|++++.|+.+++|+............+
T Consensus 171 -~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 249 (360)
T d1k32a3 171 -IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249 (360)
T ss_dssp -EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred -eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceee
Confidence 3344567788999999999999999999999999987543221000000
Q ss_pred -----eee--------ceeeeccCcceEEEEEC-----CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCC
Q 001391 298 -----EVG--------SSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 298 -----~i~--------~~~~~~h~~~I~~v~~~-----~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
.+. ...+..+...+..+.+. ..++++++.++.+++||+..+.+..+ .+ .|.+++|+||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~-~v~~~~~SpD 325 (360)
T d1k32a3 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KN-NLTDLRLSAD 325 (360)
T ss_dssp TTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EE-EEEEEEECTT
T ss_pred cccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cC-CcCEEEECCC
Confidence 000 00111222223333332 12567777899999999955544443 34 5899999999
Q ss_pred CCEEEEEeCCCCEEEEEcCC
Q 001391 360 SSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|++|++++.||.|++||++.
T Consensus 326 G~~l~~~~~Dg~i~v~d~~~ 345 (360)
T d1k32a3 326 RKTVMVRKDDGKIYTFPLEK 345 (360)
T ss_dssp SCEEEEEETTSCEEEEESSC
T ss_pred CCEEEEEECCCeEEEEECCC
Confidence 99999999999999999954
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.87 E-value=1.8e-21 Score=218.36 Aligned_cols=188 Identities=10% Similarity=0.031 Sum_probs=147.1
Q ss_pred EEEEecccccccCC-CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 69 HGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
+.-.|| | || .++|+.+++.|.+|+++.. +.+ .+ +|...|.+++|+| ||
T Consensus 6 ~~~~fS-------P~dG----~~~a~~~~g~v~v~d~~~~---------------~~~-~~-~~~~~v~~~~~sp---Dg 54 (360)
T d1k32a3 6 FAEDFS-------PLDG----DLIAFVSRGQAFIQDVSGT---------------YVL-KV-PEPLRIRYVRRGG---DT 54 (360)
T ss_dssp GEEEEE-------ECGG----GCEEEEETTEEEEECTTSS---------------BEE-EC-SCCSCEEEEEECS---SS
T ss_pred hccccc-------CCCC----CEEEEEECCeEEEEECCCC---------------cEE-Ec-cCCCCEEEEEECC---CC
Confidence 456788 6 88 6788888899999998742 222 23 6899999999999 99
Q ss_pred CEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 148 RSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 148 ~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++|++++.+. .|++||+.+++
T Consensus 55 ~~l~~~~~~~g~~v~v~d~~~~~--------------------------------------------------------- 77 (360)
T d1k32a3 55 KVAFIHGTREGDFLGIYDYRTGK--------------------------------------------------------- 77 (360)
T ss_dssp EEEEEEEETTEEEEEEEETTTCC---------------------------------------------------------
T ss_pred CEEEEEEcCCCCEEEEEECCCCc---------------------------------------------------------
Confidence 9998877553 56666654332
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
...+..|...|.+++|+|++++|++++.++.+++|++.+.+. .. .+.
T Consensus 78 -----------------------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--------~~--~~~ 124 (360)
T d1k32a3 78 -----------------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--------TV--IER 124 (360)
T ss_dssp -----------------------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------EE--EEE
T ss_pred -----------------------EEEeeCCCceEEeeeecccccccceeccccccccccccccce--------ee--eee
Confidence 223456888999999999999999999999999999988532 22 667
Q ss_pred ccCcceEEEEEC--CCEEEEEe----------CCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 001391 306 GHNARVWDCCLT--DSFIITAG----------EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~----------~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~ 373 (1088)
.|...+.+++|+ +.+|+.+. .++.+++|+..+.....+..+.. .+..++|+|+|++|++++.|+.++
T Consensus 125 ~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~s~~~~~~ 203 (360)
T d1k32a3 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS-HDYAPAFDADSKNLYYLSYRSLDP 203 (360)
T ss_dssp CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSS-BEEEEEECTTSCEEEEEESCCCCC
T ss_pred cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccccc-ccccccccCCCCEEEEEeCCCceE
Confidence 788889999998 56777543 45569999996666666666666 588999999999999999999999
Q ss_pred EEEcC
Q 001391 374 VHQFQ 378 (1088)
Q Consensus 374 iwd~~ 378 (1088)
+|+..
T Consensus 204 ~~d~~ 208 (360)
T d1k32a3 204 SPDRV 208 (360)
T ss_dssp EECSS
T ss_pred ccccc
Confidence 99874
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=1.5e-18 Score=200.15 Aligned_cols=353 Identities=8% Similarity=-0.098 Sum_probs=223.0
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
-++++.+.||+|.|||..+++++.++..+. ....++| +|||.++++++.||.|.+||+.+.+..
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~--~~~~v~f---SpDG~~l~~~s~dg~v~~~d~~t~~~~----------- 96 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRL---SASGRYLFVIGRDGKVNMIDLWMKEPT----------- 96 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEE---CTTSCEEEEEETTSEEEEEETTSSSCC-----------
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC--CeeEEEE---CCCCCEEEEEcCCCCEEEEEeeCCCce-----------
Confidence 346888999999999999999999998664 3566666 899999999999999999998722100
Q ss_pred CCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCcccCCCCceeeec-----
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGS----- 301 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~----- 301 (1088)
....+....+|.+.+.+..|+|||++| ++++.+++|++||..+++. ...+..
T Consensus 97 -----------------~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-----~~~~~~~~~~~ 154 (432)
T d1qksa2 97 -----------------TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-----KKIQSTRGMTY 154 (432)
T ss_dssp -----------------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-----EEEEECCEECT
T ss_pred -----------------EEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-----eeeeccCCccc
Confidence 011222234577777888899999986 7788899999999998654 111110
Q ss_pred -eeeeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEE
Q 001391 302 -SVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVH 375 (1088)
Q Consensus 302 -~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iw 375 (1088)
.....+......+.++ +. ++++...++.+.+|+. +++.......+.+..+..++|+|+|+++++++. ++.+.++
T Consensus 155 ~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~ 234 (432)
T d1qksa2 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 234 (432)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred cceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEe
Confidence 0123355567778887 33 5677788899999998 556554444344446899999999998777765 4577788
Q ss_pred EcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec--CCeEEEEEeccCCcc
Q 001391 376 QFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDSV 453 (1088)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~--~g~i~~~~~~~~~~~ 453 (1088)
+....... ....... ...+........+...+....... ++.+..+. ....
T Consensus 235 d~~~~~~~-----------------~~~~~g~-------~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~---~~~~ 287 (432)
T d1qksa2 235 DTKEGKLV-----------------AIEDTGG-------QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIG---TDPE 287 (432)
T ss_dssp ETTTTEEE-----------------EEEECSS-------SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE---CCTT
T ss_pred ecccceEE-----------------EEeccCc-------cccccCcccceecCCCCceecccccCCceEEecc---cccc
Confidence 87542111 0000000 001111222333333333333332 33343221 1111
Q ss_pred eeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecC
Q 001391 454 NWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL 533 (1088)
Q Consensus 454 ~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 533 (1088)
. ... +...+...... +++..+++++.+...++|......... .....+ + .|
T Consensus 288 ~----~~~-~~~~v~~~~~~--------~~g~~~~~~s~p~~~~lw~~~~~~~~~--------------~~~~sv-~-vp 338 (432)
T d1qksa2 288 G----HPD-NAWKILDSFPA--------LGGGSLFIKTHPNSQYLYVDATLNPEA--------------EISGSV-A-VF 338 (432)
T ss_dssp T----CTT-TBTSEEEEEEC--------SCSCCCCEECCTTCSEEEEECTTCSSH--------------HHHTCE-E-EE
T ss_pred c----ccc-cccEEEEEEEc--------CCCCeEEEEecCCccceeecccCCCCC--------------CeeeEE-E-EE
Confidence 0 001 11223222222 344678889999999999875432111 011111 2 27
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEE-----cCCCcEEEEe
Q 001391 534 GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCG-----DLRGNLVLFP 608 (1088)
Q Consensus 534 dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatG-----s~dg~I~Iw~ 608 (1088)
|++.|++++.|+.+++|++.... . ...|..++.+++|||||++|+.+ ..+|.|.|||
T Consensus 339 Dg~~la~~s~d~~~k~w~~~~~~-----------------~-l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 339 DIKAMTGDGSDPEFKTLPIAEWA-----------------G-ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp EGGGCCCSSSCCCEEEECHHHHH-----------------T-CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred echhhcccccCCceEeccccccc-----------------c-cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence 99999999999999999875221 1 12466789999999999988555 3578999999
Q ss_pred CCcc
Q 001391 609 LLRD 612 (1088)
Q Consensus 609 ~~~~ 612 (1088)
..+.
T Consensus 401 ~~T~ 404 (432)
T d1qksa2 401 DKTL 404 (432)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 8764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=2.2e-18 Score=198.84 Aligned_cols=347 Identities=9% Similarity=0.001 Sum_probs=202.1
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
+...++++...||+|+|||+. +++.+.++..|. .+.+++|+|||++
T Consensus 30 ~~~~~~V~~~~dg~v~vwD~~---------------------------------t~~~~~~l~~g~-~~~~vafSPDGk~ 75 (426)
T d1hzua2 30 LPNLFSVTLRDAGQIALVDGD---------------------------------SKKIVKVIDTGY-AVHISRMSASGRY 75 (426)
T ss_dssp GGGEEEEEETTTTEEEEEETT---------------------------------TCSEEEEEECCS-SEEEEEECTTSCE
T ss_pred CCeEEEEEEcCCCEEEEEECC---------------------------------CCcEEEEEeCCC-CeeEEEECCCCCE
Confidence 345567888899999999998 788888998875 5999999999999
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeee-ceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~-~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
+++++.|++|++||+.+++. ..+. .....+|...+.+++|+ ++++ +++..++++++||. .++++..+..
T Consensus 76 l~~~~~d~~v~vwd~~t~~~------~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~ 149 (426)
T d1hzua2 76 LLVIGRDARIDMIDLWAKEP------TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST 149 (426)
T ss_dssp EEEEETTSEEEEEETTSSSC------EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred EEEEeCCCCEEEEEccCCce------eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeec
Confidence 99999999999999998753 1111 01334566666777776 5665 55668999999999 6777777776
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEE
Q 001391 346 HIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (1088)
Q Consensus 346 h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 424 (1088)
|.. .+....+.+++. ..+..+.|+...++..... ..+......+..........+...+..
T Consensus 150 ~~~-~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (426)
T d1hzua2 150 RGM-TVDTQTYHPEPRVAAIIASHEHPEFIVNVKET-----------------GKVLLVNYKDIDNLTVTSIGAAPFLAD 211 (426)
T ss_dssp CEE-CSSSCCEESCCCEEEEEECSSSSEEEEEETTT-----------------TEEEEEECSSSSSCEEEEEECCSSEEE
T ss_pred cCC-CccceeecCCCceeEEEECCCCCEEEEecCCC-----------------CeEEEEEeccccceeeEEeccCCccEe
Confidence 655 455566666655 3455566666666655321 011111111111001111123456889
Q ss_pred EEeccCCeEEEEec--CCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEE
Q 001391 425 LHLTSEDTLYIATN--HGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1088)
Q Consensus 425 l~~s~~~~ll~~t~--~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~ 501 (1088)
++|+|+++++..+. ...+..++..+ .+........ ...+.....+.... ...-..+....++.+.+|+.
T Consensus 212 ~~~~~~g~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~v~~~~~ 283 (426)
T d1hzua2 212 GGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKTPHPGRGANFVHPK-----YGPVWSTSHLGDGSISLIGT 283 (426)
T ss_dssp EEECTTSCEEEEEETTCSEEEEEETTT---TEEEEEEECSSCCCCSCCEEEEETT-----TEEEEEEECTTTCEEEEEEC
T ss_pred eeECCCCcEEEeeeecccceeeeeccc---ccEEEEeccCCcccccceeeeecCC-----CCceEEeccCCCceEEEeec
Confidence 99999987655543 33344333322 2211111111 00000001000000 00123344556788888876
Q ss_pred cCCCcCc-ceeeeeeeeccccceeeeEEEeecCCCeEEEE-------ECCCCeEEEEecCCCCCcccccCCcccceeeee
Q 001391 502 VGDVHTP-QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT-------ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVA 573 (1088)
Q Consensus 502 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s-------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~ 573 (1088)
....... ......... .+...... .+++|++++|++ +..+++|++||+.+....... ....-..
T Consensus 284 ~~~~~~~~~~~~~~~l~-g~~~~v~~--v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~-----~~~~~~~ 355 (426)
T d1hzua2 284 DPKNHPQYAWKKVAELQ-GQGGGSLF--IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV-----LPIAEWA 355 (426)
T ss_dssp CTTTCTTTBTSEEEEEE-CSSSCCCC--EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-----ECHHHHH
T ss_pred cccccccccceEeEEEe-cCCCceeE--EEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE-----eccchhc
Confidence 5433211 111111111 11122222 579999999995 445789999999865432111 0000000
Q ss_pred eeccccCceEEEEEeeeCCCEEEE-----EcCCCcEEEEeCCcc
Q 001391 574 EFSSCFGARIMCLDASFEDEVLFC-----GDLRGNLVLFPLLRD 612 (1088)
Q Consensus 574 ~~~~~h~~~It~l~~spdg~~Lat-----Gs~dg~I~Iw~~~~~ 612 (1088)
. ...|..+|.+++|||||++|+. ++.+|.|+|||..+.
T Consensus 356 ~-~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 356 D-LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp C-CCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred c-cCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence 1 1246778999999999996643 357899999998864
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=4.6e-18 Score=196.15 Aligned_cols=337 Identities=9% Similarity=0.025 Sum_probs=206.1
Q ss_pred EEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCC
Q 001391 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (1088)
Q Consensus 37 ~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~ 115 (1088)
++++.. +++|+|||+.+++++.++..+. .+++++|| |||+ .+++++.|++|++||+.+...
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~--~~~~vafS-------PDGk---~l~~~~~d~~v~vwd~~t~~~------ 95 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY--AVHISRMS-------ASGR---YLLVIGRDARIDMIDLWAKEP------ 95 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS--SEEEEEEC-------TTSC---EEEEEETTSEEEEEETTSSSC------
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC--CeeEEEEC-------CCCC---EEEEEeCCCCEEEEEccCCce------
Confidence 445555 6999999999999999999754 59999999 8983 444445589999999986540
Q ss_pred CccccccceeeeccCCCCcEEEEEEecccCCCCEEEE-EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCC-
Q 001391 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA- 193 (1088)
Q Consensus 116 ~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las-gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~- 193 (1088)
.....+....+|.+.+.+++|+| ||++|++ +..++++++||..+++....+..+.... ....+ .+++
T Consensus 96 ----~~~~~i~~~~~~~~~~~s~~~sp---DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~---~~~~~ 164 (426)
T d1hzua2 96 ----TKVAEIKIGIEARSVESSKFKGY---EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-DTQTY---HPEPR 164 (426)
T ss_dssp ----EEEEEEECCSEEEEEEECCSTTC---TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-SSCCE---ESCCC
T ss_pred ----eEEEEEeCCCCCcceEEeeeecC---CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc-cceee---cCCCc
Confidence 01123344557888889999999 9998755 4579999999999998877765433211 00111 0112
Q ss_pred cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE
Q 001391 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1088)
Q Consensus 194 ~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s 273 (1088)
...++.+.|+...++.... .+.+.++.............++...+..++|+|+++++++
T Consensus 165 ~~~i~~s~d~~~~~~~~~~---------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 223 (426)
T d1hzua2 165 VAAIIASHEHPEFIVNVKE---------------------TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223 (426)
T ss_dssp EEEEEECSSSSEEEEEETT---------------------TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred eeEEEECCCCCEEEEecCC---------------------CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEe
Confidence 2333444444444444330 0111111111112223344567888999999999998877
Q ss_pred EE-CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-C--EEEEEeCCCcEEEEcC--------CCceeE
Q 001391 274 VS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-S--FIITAGEDCTCRVWGS--------DGKQLK 341 (1088)
Q Consensus 274 ~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-~--~l~sg~~Dg~i~vWd~--------~~~~~~ 341 (1088)
+. .+..+.+++..+++. ..... .....|..........+ . ..++.+.|+.+.+|+. .++...
T Consensus 224 a~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~ 297 (426)
T d1hzua2 224 AANNSNKVAVIDSKDRRL-----SALVD-VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297 (426)
T ss_dssp EETTCSEEEEEETTTTEE-----EEEEE-CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEE
T ss_pred eeecccceeeeecccccE-----EEEec-cCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeE
Confidence 65 556788999988643 11111 01111222111122221 1 2233445777777775 246778
Q ss_pred EEcccCCCCeEEEEEcCCCCEEEE-------EeCCCCEEEEEcCCC-CCCcccCCccccccCCCcceEEeeeCCCcccee
Q 001391 342 MIKEHIGRGIWRCLYDSLSSLLVT-------AGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1088)
Q Consensus 342 ~~~~h~~~~V~~l~~~~dg~~l~t-------g~~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1088)
.+.+|.. .++.++|+||+++|++ ++.|++|++||+.+. ...++..+ ....
T Consensus 298 ~l~g~~~-~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~---------------------~~~~ 355 (426)
T d1hzua2 298 ELQGQGG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI---------------------AEWA 355 (426)
T ss_dssp EEECSSS-CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH---------------------HHHH
T ss_pred EEecCCC-ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc---------------------chhc
Confidence 8999987 6999999999999994 556899999999542 22211100 0001
Q ss_pred eccCCCCceEEEEeccCCeEE-EEe-----cCCeEEEEEeccCCcce
Q 001391 414 LTDSKSEYVRCLHLTSEDTLY-IAT-----NHGYLYHTKLCDMDSVN 454 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s~~~~ll-~~t-----~~g~i~~~~~~~~~~~~ 454 (1088)
....+...|..++|+|||+.+ ++. .+|.|. +|+..+.+
T Consensus 356 ~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~---v~D~~T~k 399 (426)
T d1hzua2 356 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV---VVDDKTLK 399 (426)
T ss_dssp CCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEE---EEETTTTE
T ss_pred ccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEE---EEECCCCe
Confidence 122334568889999999644 432 355566 56666654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=3.2e-17 Score=188.93 Aligned_cols=330 Identities=9% Similarity=0.002 Sum_probs=218.6
Q ss_pred CCCCCceEEecCCCcee------eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCee--EEEEeeeCCcceEEE
Q 001391 1 MGKKDLSEWRLDVGQYL------GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPFQVFHGIRLHGI 71 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~~------~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~--~~~~~~~~~~~V~~i 71 (1088)
+.||+|+|||..+++.. ..+..++|| || |++|++++ |++|++||+.+++. +..+.. +..-.++
T Consensus 39 ~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fS--pD----G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~--~~~~~~~ 110 (432)
T d1qksa2 39 RDAGQIALIDGSTYEIKTVLDTGYAVHISRLS--AS----GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSI 110 (432)
T ss_dssp TTTTEEEEEETTTCCEEEEEECSSCEEEEEEC--TT----SCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEE
T ss_pred cCCCEEEEEECCCCcEEEEEeCCCCeeEEEEC--CC----CCEEEEEcCCCCEEEEEeeCCCceEEEEEec--CCCCCCe
Confidence 46899999999999832 248899999 99 99999887 79999999988764 344442 2223445
Q ss_pred EecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeecc-----------CCCCcEEEEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-----------RLSHWVFDVC 139 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-----------~h~~~I~~v~ 139 (1088)
.+++ ...|||+ .++++ ..+++|+|||..... .+..+. .+......+.
T Consensus 111 ~~s~---~~SpDG~---~l~vs~~~~~~v~i~d~~t~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (432)
T d1qksa2 111 ETSK---MEGWEDK---YAIAGAYWPPQYVIMDGETLE---------------PKKIQSTRGMTYDEQEYHPEPRVAAIL 169 (432)
T ss_dssp EECC---STTCTTT---EEEEEEEETTEEEEEETTTCC---------------EEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred EEec---ccCCCCC---EEEEEcCCCCeEEEEeCcccc---------------ceeeeccCCccccceeccCCCceeEEE
Confidence 4442 1228884 44444 458999999988533 222221 3456678899
Q ss_pred EecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCcccc
Q 001391 140 FLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 140 f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~ 217 (1088)
++| ++..+ ++...++.|.+||..+.+......-+.......+.+ +|++.++++++. ++.+.++|..
T Consensus 170 ~s~---dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~---spdg~~~~va~~~~~~v~v~d~~------ 237 (432)
T d1qksa2 170 ASH---YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL---DGSHRYFITAANARNKLVVIDTK------ 237 (432)
T ss_dssp ECS---SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE---CTTSCEEEEEEGGGTEEEEEETT------
T ss_pred ECC---CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceE---CCCCCEEEEeccccceEEEeecc------
Confidence 999 88765 556678999999998877654433233334556665 788887766654 5678888887
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-----CCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCccc
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-----GHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWK 291 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~ 291 (1088)
..+.+..+. .|........+...+...++.. .|+.|.+|+....
T Consensus 238 ---------------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~--- 287 (432)
T d1qksa2 238 ---------------------------EGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE--- 287 (432)
T ss_dssp ---------------------------TTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT---
T ss_pred ---------------------------cceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc---
Confidence 333333332 2334444455555555555443 4789999987663
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
....|...+....+. +..+++++.+.+.++|.... +..|.. -..++++ ||++.|++++.|
T Consensus 288 -----------~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~-----~~~~~~-~~~sv~v-pDg~~la~~s~d 349 (432)
T d1qksa2 288 -----------GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT-----LNPEAE-ISGSVAV-FDIKAMTGDGSD 349 (432)
T ss_dssp -----------TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT-----TCSSHH-HHTCEEE-EEGGGCCCSSSC
T ss_pred -----------cccccccEEEEEEEcCCCCeEEEEecCCccceeeccc-----CCCCCC-eeeEEEE-EechhhcccccC
Confidence 345566777788886 46788999999999998621 122322 1234554 899999999999
Q ss_pred CCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe------cCCeEE
Q 001391 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT------NHGYLY 443 (1088)
Q Consensus 370 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t------~~g~i~ 443 (1088)
+.+++|++... +. +..+...+..++|+|||+.+..+ .+|.|.
T Consensus 350 ~~~k~w~~~~~--~~------------------------------l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~ 397 (432)
T d1qksa2 350 PEFKTLPIAEW--AG------------------------------ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALV 397 (432)
T ss_dssp CCEEEECHHHH--HT------------------------------CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEE
T ss_pred CceEecccccc--cc------------------------------cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEE
Confidence 99999987321 00 11223467889999999655332 356676
Q ss_pred EEEeccCCcce
Q 001391 444 HTKLCDMDSVN 454 (1088)
Q Consensus 444 ~~~~~~~~~~~ 454 (1088)
+++..+.+
T Consensus 398 ---i~D~~T~k 405 (432)
T d1qksa2 398 ---VVDDKTLE 405 (432)
T ss_dssp ---EEETTTTE
T ss_pred ---EEECCCce
Confidence 56666655
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.77 E-value=5.4e-16 Score=168.26 Aligned_cols=256 Identities=11% Similarity=0.032 Sum_probs=188.2
Q ss_pred EeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccc
Q 001391 41 GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETC 119 (1088)
Q Consensus 41 g~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~ 119 (1088)
+.+++|.|||+++++.++++.... .+++++|+ |||+ .++++. .++.|++||+.+
T Consensus 9 ~~~~~v~v~D~~t~~~~~~i~~g~--~p~~va~s-------pdG~---~l~v~~~~~~~i~v~d~~t------------- 63 (301)
T d1l0qa2 9 SESDNISVIDVTSNKVTATIPVGS--NPMGAVIS-------PDGT---KVYVANAHSNDVSIIDTAT------------- 63 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSS--SEEEEEEC-------TTSS---EEEEEEGGGTEEEEEETTT-------------
T ss_pred CCCCEEEEEECCCCeEEEEEECCC--CceEEEEe-------CCCC---EEEEEECCCCEEEEEECCC-------------
Confidence 347999999999999999998643 58999999 8883 454444 489999999985
Q ss_pred cccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE-E
Q 001391 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-A 197 (1088)
Q Consensus 120 ~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~ 197 (1088)
.+.++.+..|. .+..++|++ ++..++ ++..++.+.+|+..+++....+..+... ..+.+ ++++..+ +
T Consensus 64 --~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~dg~~~~~ 132 (301)
T d1l0qa2 64 --NNVIATVPAGS-SPQGVAVSP---DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP--LGLAL---SPDGKKLYV 132 (301)
T ss_dssp --TEEEEEEECSS-SEEEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE--EEEEE---CTTSSEEEE
T ss_pred --Cceeeeeeccc-ccccccccc---ccccccccccccceeeecccccceeeeeccccccc--eEEEe---ecCCCeeee
Confidence 45666666665 468999999 887554 4566789999999999888887765543 33333 5677665 4
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
++..++.+.+|+.. ....+..+.. ...+..++++|+++.+++++.+
T Consensus 133 ~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 178 (301)
T d1l0qa2 133 TNNGDKTVSVINTV---------------------------------TKAVINTVSV-GRSPKGIAVTPDGTKVYVANFD 178 (301)
T ss_dssp EETTTTEEEEEETT---------------------------------TTEEEEEEEC-CSSEEEEEECTTSSEEEEEETT
T ss_pred eeccccceeeeecc---------------------------------ccceeeeccc-CCCceEEEeeccccceeeeccc
Confidence 56678889999988 5555555554 4568899999999988887765
Q ss_pred -CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe---CCCcEEEEcC-CCceeEEEcccCCCC
Q 001391 278 -RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG---EDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1088)
Q Consensus 278 -g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~---~Dg~i~vWd~-~~~~~~~~~~h~~~~ 350 (1088)
+.+.+|+..... .. ........+..++++ +..++.++ .+++|++||. +++.+..+..+. .
T Consensus 179 ~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~--~ 245 (301)
T d1l0qa2 179 SMSISVIDTVTNS--------VI---DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--D 245 (301)
T ss_dssp TTEEEEEETTTTE--------EE---EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--S
T ss_pred cccccccccccee--------ee---ecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC--C
Confidence 566677766632 22 222333456677887 55555443 4478999999 777777776554 4
Q ss_pred eEEEEEcCCCCEE-EEEeCCCCEEEEEcCC
Q 001391 351 IWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 351 V~~l~~~~dg~~l-~tg~~Dg~I~iwd~~~ 379 (1088)
+++++|+|||++| ++++.|++|++||+.+
T Consensus 246 ~~~va~spdg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 246 PAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 8999999999976 6777899999999854
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.74 E-value=1.6e-15 Score=164.45 Aligned_cols=257 Identities=9% Similarity=0.041 Sum_probs=186.7
Q ss_pred CCCCCceEEecCCCcee------eeeEEEEEeccCCCCCCCCEEE-EEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQYL------GEISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~~------~~V~~v~fs~~pd~~~~~~~la-ag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.|++|.+||+.+++.. +.+.+++|+ || +++|+ ++. ++.|++||+.+++.++++..+. .+++++
T Consensus 9 ~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~s--pd----G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~--~~~~~~ 80 (301)
T d1l0qa2 9 SESDNISVIDVTSNKVTATIPVGSNPMGAVIS--PD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVA 80 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEECCCCceEEEEe--CC----CCEEEEEECCCCEEEEEECCCCceeeeeeccc--cccccc
Confidence 46889999999999833 346789999 99 88775 454 5999999999999999998754 479999
Q ss_pred ecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|+ ++++ .++++. +++.+.+|+... .+....+. +...+.++.|+| ++..++
T Consensus 81 ~~-------~~~~---~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~---dg~~~~ 131 (301)
T d1l0qa2 81 VS-------PDGK---QVYVTNMASSTLSVIDTTS---------------NTVAGTVK-TGKSPLGLALSP---DGKKLY 131 (301)
T ss_dssp EC-------TTSS---EEEEEETTTTEEEEEETTT---------------TEEEEEEE-CSSSEEEEEECT---TSSEEE
T ss_pred cc-------cccc---cccccccccceeeeccccc---------------ceeeeecc-ccccceEEEeec---CCCeee
Confidence 99 6663 444444 478999999874 23444444 345678999999 888765
Q ss_pred -EEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCC
Q 001391 152 -IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 152 -sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
++..++.+.+|+..+...+..+..... ...+.+ .+++..+++++.+ +.+.+|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------------ 188 (301)
T d1l0qa2 132 VTNNGDKTVSVINTVTKAVINTVSVGRS--PKGIAV---TPDGTKVYVANFDSMSISVIDTV------------------ 188 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCSS--EEEEEE---CTTSSEEEEEETTTTEEEEEETT------------------
T ss_pred eeeccccceeeeeccccceeeecccCCC--ceEEEe---eccccceeeeccccccccccccc------------------
Confidence 455688899999999988887765543 223333 4667777666554 666677765
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
......... +...+..++|++++..++.++. ++.|++||..+++. +. . ..
T Consensus 189 ---------------~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--------~~--~-~~ 241 (301)
T d1l0qa2 189 ---------------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--------TA--R-IP 241 (301)
T ss_dssp ---------------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--------EE--E-EE
T ss_pred ---------------ceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeE--------EE--E-Ec
Confidence 333444443 3456788999999998766543 46899999988533 32 2 23
Q ss_pred cCcceEEEEEC--CCEE-EEEeCCCcEEEEcC-CCceeEEEc
Q 001391 307 HNARVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
+...+.+++|+ +.+| ++++.|++|++||+ +++.+.++.
T Consensus 242 ~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 34568999998 4555 67888999999999 788887775
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=1.6e-15 Score=167.18 Aligned_cols=281 Identities=7% Similarity=-0.019 Sum_probs=183.5
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeC-CcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~-~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~ 112 (1088)
+|+++++ +++|+|||++++++++++..+. +..+.+++|+ |||+ .++++. .++.|.+||+.+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~s-------pDg~---~l~v~~~~~~~v~v~D~~t~----- 66 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-------PGGR---IAYATVNKSESLVKIDLVTG----- 66 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC-------TTSS---EEEEEETTTTEEEEEETTTC-----
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEEC-------CCCC---EEEEEECCCCeEEEEECCCC-----
Confidence 4777877 7999999999999999998643 4468899999 8883 444554 4899999999863
Q ss_pred CCCCccccccceeeeccCC-----CCcEEEEEEecccCCCCEEEEEE------------cCCcEEEEEcCCCceEEEecc
Q 001391 113 QYQPETCVNLSLVQSLPRL-----SHWVFDVCFLKVCNGNRSLAIGC------------SDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h-----~~~I~~v~f~p~~~d~~~lasgs------------~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
+.+..+..+ ...+..++|+| ++++++++. .++.+.+||..+++....+..
T Consensus 67 ----------~~~~~~~~~~~~~~~~~~~~v~~s~---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 133 (337)
T d1pbyb_ 67 ----------ETLGRIDLSTPEERVKSLFGAALSP---DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp ----------CEEEEEECCBTTEEEECTTCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred ----------cEEEEEecCCCcccccceeeEEEcC---CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc
Confidence 334443333 34566899999 999888876 367899999999988887765
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC-----CCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-----SPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
+.. ...+.+ ++++.++++++ +.+.+||..+.+...... ......+++.. ++...
T Consensus 134 ~~~--~~~~~~---s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~------- 192 (337)
T d1pbyb_ 134 PRQ--ITMLAW---ARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA-------VWNQH------- 192 (337)
T ss_dssp CSS--CCCEEE---CTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC-------CCCCC-------
T ss_pred cCC--ceEEEE---cCCCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCCcce-------eeccc-------
Confidence 433 222333 68898888876 457789987443221111 00011111100 00000
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCC
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDC 328 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg 328 (1088)
...+...+.......+.......+.++.+.+|+..++.. .. ....++...+..+.+.+ .+++. .++
T Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 260 (337)
T d1pbyb_ 193 -ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--------AM-REVRIMDVFYFSTAVNPAKTRAFG--AYN 260 (337)
T ss_dssp -TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--------EE-EEEEECSSCEEEEEECTTSSEEEE--EES
T ss_pred -cccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE--------EE-EEecCCCcceEEEEecccceEEEE--ccc
Confidence 000111111122223333333344456788999887532 21 14556777788888883 44443 368
Q ss_pred cEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+++||+ +++.+..+.. .. .+.+++|+|||++|++++.|++|++||..+
T Consensus 261 ~i~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 261 VLESFDLEKNASIKRVPL-PH-SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-SS-CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred cEEEEECCCCcEEEEEcC-CC-CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999999 6777777653 34 588999999999999999999999999954
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.68 E-value=4.4e-16 Score=172.49 Aligned_cols=286 Identities=7% Similarity=-0.015 Sum_probs=181.9
Q ss_pred EEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVK 100 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~ 100 (1088)
++|+ ++ ++||++++ +++|.|||+++++++++++.+++..+.+++|+ |||+ .++++. .++.|.
T Consensus 2 ~a~~--~~----~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~s-------pDG~---~l~v~~~~~~~v~ 65 (346)
T d1jmxb_ 2 PALK--AG----HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-------PDNR---TAYVLNNHYGDIY 65 (346)
T ss_dssp CCCC--TT----CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC-------TTSS---EEEEEETTTTEEE
T ss_pred ccCC--CC----CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEEC-------CCCC---EEEEEECCCCcEE
Confidence 4677 77 89999988 79999999999999999987666568999999 8884 444554 479999
Q ss_pred EEEeccCCCCCCCCCCccccccceeeecc------CCCCcEEEEEEecccCCCCEEEEEE------------cCCcEEEE
Q 001391 101 LFELNFELSPNSQYQPETCVNLSLVQSLP------RLSHWVFDVCFLKVCNGNRSLAIGC------------SDNSIRVW 162 (1088)
Q Consensus 101 iw~l~~~~~~~~~~~~~~~~~~~~~~~l~------~h~~~I~~v~f~p~~~d~~~lasgs------------~Dg~V~iW 162 (1088)
+||+.+.. .+..+. .+...+..++|+| ||+++++++ .++.+.+|
T Consensus 66 ~~d~~t~~---------------~~~~~~~~~~~~~~~~~~~~v~~s~---DG~~l~v~~~~~~~~~~~~~~~~~~i~~~ 127 (346)
T d1jmxb_ 66 GIDLDTCK---------------NTFHANLSSVPGEVGRSMYSFAISP---DGKEVYATVNPTQRLNDHYVVKPPRLEVF 127 (346)
T ss_dssp EEETTTTE---------------EEEEEESCCSTTEEEECSSCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred EEeCccCe---------------eeeeecccccccccCCceEEEEEec---CCCEEEEEecCCcceeeeeccCcceEEEE
Confidence 99998532 222221 1223467899999 999887765 47788999
Q ss_pred EcCCCceEEEec---cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC-----CCCCccCCCCCCCC
Q 001391 163 DISNSSIILEVH---SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-----SPEGNHAHGSSSDF 234 (1088)
Q Consensus 163 d~~~~~~~~~~~---~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~-----~~~~~s~~~~~~~~ 234 (1088)
+..+++....+. .+..... +. .++++.+++++ +.+.+|++.+.+...... .....++++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 197 (346)
T d1jmxb_ 128 STADGLEAKPVRTFPMPRQVYL--MR---AADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF-- 197 (346)
T ss_dssp EGGGGGGBCCSEEEECCSSCCC--EE---ECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC--
T ss_pred ecccceeeeEEEeeeccCceEE--EE---ecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEE--
Confidence 998776543322 1111111 11 13555555443 568888877443221111 111111111110
Q ss_pred ceeEecccccceeeeEEEeCCCCCE----EEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSI----FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V----~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
|.. ......+ ....+.+....+.++..+..+.+|+..++.. .. ....+|...
T Consensus 198 -----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~ 253 (346)
T d1jmxb_ 198 -----WPH----------QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT--------HT-QEFADLTEL 253 (346)
T ss_dssp -----CCC----------CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE--------EE-EEEEECSSC
T ss_pred -----EEE----------ecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce--------EE-EEeecccce
Confidence 000 0011111 1122233445566667777899999887532 22 256678888
Q ss_pred eEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 311 VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 311 I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..+.++ +..++... ++.+++||. +++.+..+... . .+++++|+|||++|++++.|+.|++||..+
T Consensus 254 ~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~-~-~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 254 YFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD-H-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-S-CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred eEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCC-C-CEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 8888887 45555554 467999999 77777776533 3 589999999999999999999999999964
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.66 E-value=1.6e-15 Score=167.10 Aligned_cols=282 Identities=7% Similarity=-0.031 Sum_probs=181.0
Q ss_pred CCCCCceEEecCCCceee---------eeEEEEEeccCCCCCCCCEEE-EEe-CCeEEEEECCCCeeEEEEeeeCC----
Q 001391 1 MGKKDLSEWRLDVGQYLG---------EISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGTLIRPFQVFHG---- 65 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~~~---------~V~~v~fs~~pd~~~~~~~la-ag~-d~~I~vwd~~tg~~~~~~~~~~~---- 65 (1088)
+.|++|+|||+.+++... .+.+++|+ || +++|+ ++. ++.|.+||+.+++++..+..+..
T Consensus 8 ~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~s--pD----g~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA--PG----GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC--TT----SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cCCCEEEEEECCCCeEEEEEECCCCCCCccEEEEC--CC----CCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 468999999999998432 25699999 99 88875 555 69999999999999998876442
Q ss_pred cceEEEEecccccccCCCccceeeEEEEE------------CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALF------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~------------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
..+.+++|+ ||++ .++++. ++..+.+||.... +....+. +..
T Consensus 82 ~~~~~v~~s-------~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------~~~~~~~-~~~ 135 (337)
T d1pbyb_ 82 KSLFGAALS-------PDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETL---------------SRRKAFE-APR 135 (337)
T ss_dssp ECTTCEEEC-------TTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTT---------------EEEEEEE-CCS
T ss_pred cceeeEEEc-------CCCc---EEEEeecCCcceeeeccccccceeeccccCC---------------eEEEecc-ccC
Confidence 245688888 7773 333332 3567888887742 3344443 345
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCeEEEEEecc
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDW 212 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~I~vwd~~~ 212 (1088)
.+.+++|+| +++++++++. .+.+||..+++....+..+....... ..+++..+. .+...+....+....
T Consensus 136 ~~~~~~~s~---dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (337)
T d1pbyb_ 136 QITMLAWAR---DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETY-----AQPDVLAVWNQHESSGVMATPFYTA 205 (337)
T ss_dssp SCCCEEECT---TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTB-----CCCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred CceEEEEcC---CCCEEEEEcC--CcceeeeecCcEEEEeecCCccccce-----ecCCcceeeccccccceeeeeeeee
Confidence 688999999 9999998864 47889999998887765332111000 012222111 111122222222110
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
.... ...........+.+|+..........+..|...+..+.++|++.+++.+ ++.+++||+.+++.
T Consensus 206 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~-- 272 (337)
T d1pbyb_ 206 RKDI---------DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS-- 272 (337)
T ss_dssp BTTS---------CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE--
T ss_pred eecc---------ceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcE--
Confidence 0000 0000000122233333322233344556788889999999999988776 47899999998643
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEccc
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h 346 (1088)
+. ...+...+.+++|+ +.+|++++.|++|++||. +++.+.+++..
T Consensus 273 ------~~---~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 273 ------IK---RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ------EE---EEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred ------EE---EEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence 32 23455678899998 689999999999999999 78888877543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.56 E-value=3.6e-12 Score=142.63 Aligned_cols=274 Identities=10% Similarity=-0.090 Sum_probs=180.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe------CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~------d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
+.+++..++++ || ++.+++.. .+.|.|||.++++.+.++..+. ..+++|+ ||| .
T Consensus 19 ~~~p~~~~a~s--pd----g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~---~~~~a~S-------pDG----~ 78 (373)
T d2madh_ 19 ADGPTNDEAPG--AD----GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF---LPNPVAA-------HSG----S 78 (373)
T ss_pred CCCCccccccC--CC----CCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC---CccEEEc-------CCC----C
Confidence 56889999999 99 77776532 2679999999999999887643 3479999 888 4
Q ss_pred EEEEEC-----------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE-------EEEEEecccCCCCEEE
Q 001391 90 EVALFG-----------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-------FDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 90 ~la~~g-----------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I-------~~v~f~p~~~d~~~la 151 (1088)
.+++.. ++.|.+||..+. +.+..+..+.... ..+.|+| +++.++
T Consensus 79 ~l~va~~~~~~~~~~~~~~~v~v~D~~t~---------------~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~~~ 140 (373)
T d2madh_ 79 EFALASTSFSRIAKGKRTDYVEVFDPVTF---------------LPIADIELPDAPRFDVGPYSWMNANTP---NNADLL 140 (373)
T ss_pred EEEEEeecCCcccccccceEEEEEECCCC---------------cEEEEEecCCcceeEeccCCCcEEEEe---CCCcEE
Confidence 444432 478999999853 3444444443332 4578888 888665
Q ss_pred EE--EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 152 IG--CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 152 sg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
.. ..++.+.+|+....+.......+. .+.+ ++++. .+++...|+.+.+|+..
T Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---s~~g~~~~v~~~~dg~~~~~~~~----------------- 195 (373)
T d2madh_ 141 FFQFAAGPAVGLVVQGGSSDDQLLSSPT-----CYHI---HPGAPSTFYLLCAQGGLAKTDHA----------------- 195 (373)
T ss_pred EEEEcCCCceEEeeccCCeEEEEeccce-----eEEE---ecCCCcEEEEEcCCCeEEEEEcC-----------------
Confidence 54 456789999998887766654432 1222 34454 55788899999999987
Q ss_pred CCCCCCceeEecccccceeeeEEEe------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLV------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
......... ++......+.+.+++. ++..+.++.+.+|+....... .+.
T Consensus 196 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~------~~~-- 250 (373)
T d2madh_ 196 ----------------GGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGAT------NKA-- 250 (373)
T ss_pred ----------------CceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEE------EEE--
Confidence 222222221 2223344455666554 456667888999998875321 000
Q ss_pred eeecc----------CcceEEEEE-----------C-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC
Q 001391 303 VLYGH----------NARVWDCCL-----------T-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 303 ~~~~h----------~~~I~~v~~-----------~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
....+ ......+++ . +..+++...++.+.+||. +++.+..+... . .+..++|+||
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-~-~~~~~a~spD 328 (373)
T d2madh_ 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-H-DVDAISVAQD 328 (373)
T ss_pred eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC-C-CeeEEEECCC
Confidence 00000 001111111 1 456677788899999999 78888877643 3 5899999999
Q ss_pred CC--EEEEEeCCCCEEEEEcCC
Q 001391 360 SS--LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 360 g~--~l~tg~~Dg~I~iwd~~~ 379 (1088)
|+ ++++++.|++|++||+.+
T Consensus 329 G~~~l~vt~~~d~~v~v~D~~t 350 (373)
T d2madh_ 329 GGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CCEEEEEEeCCCCeEEEEECCC
Confidence 98 457889999999999953
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.55 E-value=3.6e-13 Score=148.45 Aligned_cols=287 Identities=8% Similarity=-0.034 Sum_probs=182.2
Q ss_pred CCCCCceEEecCCCcee--------eeeEEEEEeccCCCCCCCCEEEE-Ee-CCeEEEEECCCCeeEEEEeeeCC-----
Q 001391 1 MGKKDLSEWRLDVGQYL--------GEISALCFVHLPSHLSSLPFLLA-GS-GSQVLLYDLEAGTLIRPFQVFHG----- 65 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~~--------~~V~~v~fs~~pd~~~~~~~laa-g~-d~~I~vwd~~tg~~~~~~~~~~~----- 65 (1088)
+.|++|.+||+.+++.. ..+.+++|+ || ++++++ +. ++.|++||+.+++.+..+.....
T Consensus 15 ~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~s--pD----G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~ 88 (346)
T d1jmxb_ 15 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA--PD----NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 88 (346)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC--TT----SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred cCCCEEEEEECCCCCEEEEEEcCCCCCcceEEEC--CC----CCEEEEEECCCCcEEEEeCccCeeeeeecccccccccC
Confidence 36889999999999832 235699999 99 887755 44 69999999999999988875322
Q ss_pred cceEEEEecccccccCCCccceeeEEEEE------------CCCEEEEEEeccCCCCCCCCCCccccccceeeecc--CC
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALF------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--RL 131 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~------------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~h 131 (1088)
..+.+++|+ |||+ .++++. .+..+.+|+..... ....+. ..
T Consensus 89 ~~~~~v~~s-------~DG~---~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~ 143 (346)
T d1jmxb_ 89 RSMYSFAIS-------PDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGL---------------EAKPVRTFPM 143 (346)
T ss_dssp ECSSCEEEC-------TTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGG---------------GBCCSEEEEC
T ss_pred CceEEEEEe-------cCCC---EEEEEecCCcceeeeeccCcceEEEEecccce---------------eeeEEEeeec
Confidence 235678888 8883 333332 36778888877532 111111 12
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEe
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKV 210 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~ 210 (1088)
...+..+.+++ ++..+++ ++.+.+|++.+++.+..+..+.... .+. .++++..+ +.+..++.+.+++.
T Consensus 144 ~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 212 (346)
T d1jmxb_ 144 PRQVYLMRAAD---DGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNR--KGY---SAPDVLYFWPHQSPRHEFSMLYT 212 (346)
T ss_dssp CSSCCCEEECT---TSCEEEE---SSSEEEECTTTCCEEEEECSTTCCC--TTB---CCCBCCCCCCCCCTTCEEEEEEE
T ss_pred cCceEEEEecC---CCEEEEe---CCcceEEEccCCCEEEEEecCCCcc--ceE---EeccccEEEEEecCCCceEeeee
Confidence 24455666766 7765554 3568999999998888775432210 011 12344333 23334455555543
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
......... .-........+.+|+..........+..|...+..+.+++++.+++.... +.|++||..+++.
T Consensus 213 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~ 284 (346)
T d1jmxb_ 213 IARFKDDKQ-------DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKL 284 (346)
T ss_dssp EEEC--------------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEE
T ss_pred eeeeccCce-------eEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcE
Confidence 310000000 00000122334444443334445556678899999999999988877665 4799999988533
Q ss_pred cCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
+. ...+...+.+++|+ +.+|++++.|+.|++||. +++.+.++..+.+
T Consensus 285 --------~~---~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 285 --------IK---AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp --------EE---EEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred --------EE---EEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 32 22344568899998 689999999999999999 7888888876654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.51 E-value=9.6e-12 Score=139.04 Aligned_cols=285 Identities=10% Similarity=-0.062 Sum_probs=176.7
Q ss_pred CCCceEEecCCCceeee-----eEEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeCCc
Q 001391 3 KKDLSEWRLDVGQYLGE-----ISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHGI 66 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~~~-----V~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~~~ 66 (1088)
++.|.+||..+++..+. ...++|+ || +++|+++. ++.|+|||..+++++..+..+...
T Consensus 46 ~~~v~v~D~~tg~~~~~~~~~~~~~~a~S--pD----G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~ 119 (373)
T d2madh_ 46 IIQQWVLDAGSGSILGHVNGGFLPNPVAA--HS----GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP 119 (373)
T ss_pred CceEEEEECCCCCEEEEEeCCCCccEEEc--CC----CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc
Confidence 45689999999994433 3379999 99 88888764 367999999999999888765542
Q ss_pred c------eEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 67 R------LHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 67 ~------V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
. ...+.|+ ++++ ..++.... ++.+.+|+..... .. .+.....++.
T Consensus 120 ~~~~~~~~~~~~~s-------~dg~--~~~v~~~~~~~~~~~~~~~~~~---------------~~----~~~~~~~~~~ 171 (373)
T d2madh_ 120 RFDVGPYSWMNANT-------PNNA--DLLFFQFAAGPAVGLVVQGGSS---------------DD----QLLSSPTCYH 171 (373)
T ss_pred eeEeccCCCcEEEE-------eCCC--cEEEEEEcCCCceEEeeccCCe---------------EE----EEeccceeEE
Confidence 1 1345555 6653 12222323 5677777766321 12 3334567899
Q ss_pred EecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCC---ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcc
Q 001391 140 FLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (1088)
Q Consensus 140 f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~---~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~ 215 (1088)
++| +++ .+++.+.|+.+.+|+...++......... ....+.... ...+++ .++..+.++.+.+|+......
T Consensus 172 ~s~---~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 246 (373)
T d2madh_ 172 IHP---GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA-QANKSG-RIVWPVYSGKILQADISAAGA 246 (373)
T ss_pred Eec---CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE-EECCCc-eEEEecCCceEEEEEcCCCeE
Confidence 999 776 45678899999999999887765543211 111111111 113334 455566788999999873221
Q ss_pred ccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC----------CCEEEEEECCCcEEEEEc
Q 001391 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC----------GSKLVSVSDDRSARIWEV 285 (1088)
Q Consensus 216 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~----------g~~l~s~s~Dg~v~iWd~ 285 (1088)
.... .+... ................++++++ +..+++...++.+.+||.
T Consensus 247 ~~~~-------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 305 (373)
T d2madh_ 247 TNKA-------------------PIDAL--SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEE-------------------eeccc--cCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence 1000 00000 0000000001112223344444 445566677788999999
Q ss_pred CCCcccCCCCceeeeceeeeccCcceEEEEEC--CC--EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS--FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~--~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
.+++. + ....+...+.+++|+ +. ++++++.|++|++||+ +++.+..+..+.. ..+.+++.++
T Consensus 306 ~t~~~--------~---~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~-~P~~l~~~~~ 372 (373)
T d2madh_ 306 LVGQT--------S---SQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS-GPQVLSVMNE 372 (373)
T ss_pred CCCcE--------E---EEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC-CCcEEEEecC
Confidence 88643 2 333466778999998 34 4578999999999999 8999999987765 5777777654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=4.5e-12 Score=138.94 Aligned_cols=280 Identities=13% Similarity=0.082 Sum_probs=170.2
Q ss_pred EEEEe-CCeEEEEECCCCeeEEEEe--eeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCC
Q 001391 38 LLAGS-GSQVLLYDLEAGTLIRPFQ--VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 38 laag~-d~~I~vwd~~tg~~~~~~~--~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~ 113 (1088)
++++. +++|+|||+.+...+..++ .+.+ .+.+++|+ |||+ .++++.. |+.|++|++.....
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~-~v~~la~s-------pDG~---~L~v~~~~d~~i~~~~i~~~~~---- 71 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPG-QVQPMVVS-------PDKR---YLYVGVRPEFRVLAYRIAPDDG---- 71 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSS-CCCCEEEC-------TTSS---EEEEEETTTTEEEEEEECTTTC----
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCC-CEeEEEEe-------CCCC---EEEEEECCCCeEEEEEEeCCCC----
Confidence 34454 7999999987653333332 2334 69999999 8884 4545554 89999999985430
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEecc-CCceeEEEEeeecCCC
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNL 191 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~-~~~~~~~s~~~~~~s~ 191 (1088)
..+.... ..+...+..++|+| ||++|++++. ++.|.+|+............ .......++.+ ++
T Consensus 72 -------~~~~~~~-~~~~~~p~~l~~sp---Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~---s~ 137 (333)
T d1ri6a_ 72 -------ALTFAAE-SALPGSLTHISTDH---QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANI---SP 137 (333)
T ss_dssp -------CEEEEEE-EECSSCCSEEEECT---TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEE---CT
T ss_pred -------cEEEeee-cccCCCceEEEEcC---CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEe---ee
Confidence 1122222 23445678899999 9999988875 77899999887655433321 11111222333 57
Q ss_pred CCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 192 EALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 192 ~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
++..++.++ .+..|.+|+........ ..........+......++|++++.+
T Consensus 138 d~~~~~~~~~~~~~i~~~~~~~~~~~~---------------------------~~~~~~~~~~~g~~p~~i~~~~~~~~ 190 (333)
T d1ri6a_ 138 DNRTLWVPALKQDRICLFTVSDDGHLV---------------------------AQDPAEVTTVEGAGPRHMVFHPNEQY 190 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEE---------------------------EEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred cceeeeccccccceeeEEEeccCCcce---------------------------eeeceeeeeecCCCccEEEEecccee
Confidence 888777766 45679999987211000 01111122345566789999999988
Q ss_pred EEEEE-CCCcEEEEEcCCCcccCCCCceeeecee----eeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC--CCcee
Q 001391 271 LVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSV----LYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS--DGKQL 340 (1088)
Q Consensus 271 l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~----~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~--~~~~~ 340 (1088)
++... ..+...+|+....... ........ ..........++++ +. .++.+..++++.+|++ .+...
T Consensus 191 ~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (333)
T d1ri6a_ 191 AYCVNELNSSVDVWELKDPHGN----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 266 (333)
T ss_dssp EEEEETTTTEEEEEESSCTTSC----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred EEeeccccCceEEEeecccccc----eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE
Confidence 76654 5567888887654220 11111000 01122345566776 44 4555667789999988 23322
Q ss_pred EE--EcccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 001391 341 KM--IKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1088)
Q Consensus 341 ~~--~~~h~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~ 378 (1088)
.. ...... .+++++|+|||++|++++. ++.|++|+++
T Consensus 267 ~~~~~~~~~~-~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 267 SKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEeCCCC-CeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 22 222233 4788999999998777664 6899999774
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=8.8e-13 Score=146.41 Aligned_cols=280 Identities=11% Similarity=0.013 Sum_probs=176.7
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe------CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~------d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|+...+.+ || ++.+++.. ..+|.|||..+++++.++.... +..++|| |||+ .+.+
T Consensus 3 p~~~~a~s--pd----g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~---~~~~a~S-------pDg~---~l~v 63 (355)
T d2bbkh_ 3 PRILEAPA--PD----ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---LPNPVVA-------DDGS---FIAH 63 (355)
T ss_dssp CCBCCCCC--CC----TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---SCEEEEC-------TTSS---CEEE
T ss_pred CcEeEeeC--CC----CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC---CCceEEc-------CCCC---EEEE
Confidence 45555677 88 77776643 2579999999999999988643 3479999 8884 3433
Q ss_pred EE----------CCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEE-
Q 001391 93 LF----------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGC- 154 (1088)
Q Consensus 93 ~~----------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs- 154 (1088)
+. .++.|++||+.... .+..+.. .......++|+| ++++++++.
T Consensus 64 ~~~~~~~~~~g~~d~~v~v~D~~t~~---------------~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~~~v~~~ 125 (355)
T d2bbkh_ 64 ASTVFSRIARGERTDYVEVFDPVTLL---------------PTADIELPDAPRFLVGTYPWMTSLTP---DGKTLLFYQF 125 (355)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTTCC---------------EEEEEEETTCCCCCBSCCGGGEEECT---TSSEEEEEEC
T ss_pred EeCCCccccccCCCCEEEEEECCCCC---------------EEEEEecCCcceeecCCCCceEEEec---CCCeeEEecC
Confidence 32 26789999998643 2222211 123345689999 999877764
Q ss_pred -cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 155 -SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 155 -~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
.+..+.+|+..+++.+..+..+.....+.. .....++.+.|+...++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~dg~~~~v~~~~~~~------------------ 180 (355)
T d2bbkh_ 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT-------APDTFFMHCRDGSLAKVAFGTEGT------------------ 180 (355)
T ss_dssp SSSCEEEEEETTTTEEEEEEECCSEEEEEEE-------ETTEEEEEETTSCEEEEECCSSSC------------------
T ss_pred CCCceeeeeecCCCcEeeEEecCCcceEeec-------CCcceEEEcCCCCEEEEEecCCCe------------------
Confidence 567899999999998888776554333221 123344445566666555441000
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC-----
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----- 308 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~----- 308 (1088)
+...... .. ...+...+....+.+++..++.++.++.+++|++..+.. ..+. ....+.
T Consensus 181 ---~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~--~~~~~~~~~~~ 243 (355)
T d2bbkh_ 181 ---PEITHTE-VF-----HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA------KFLP--AVEALTEAERA 243 (355)
T ss_dssp ---CEEEECC-CC-----SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC------EECC--CEESSCHHHHH
T ss_pred ---EEEEecc-cc-----cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE------EEEe--ccCCcccceEe
Confidence 0000000 00 013344455667888889999999999999999988643 1111 111111
Q ss_pred -----cceEEEEEC--CCEEEEEeCC----------CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC--EEEEEeC
Q 001391 309 -----ARVWDCCLT--DSFIITAGED----------CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGF 368 (1088)
Q Consensus 309 -----~~I~~v~~~--~~~l~sg~~D----------g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~--~l~tg~~ 368 (1088)
.....++++ +..++....+ ..|.+||. +++.+..+.... .+.+++|+|||+ ++++++.
T Consensus 244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~--~~~~~a~spDG~~~l~v~~~~ 321 (355)
T d2bbkh_ 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTG 321 (355)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETT
T ss_pred eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC--CEEEEEEcCCCCeEEEEEECC
Confidence 111224444 4454444332 36999999 788887776543 488999999997 4567788
Q ss_pred CCCEEEEEcCC
Q 001391 369 DSAIKVHQFQA 379 (1088)
Q Consensus 369 Dg~I~iwd~~~ 379 (1088)
|++|.+||.++
T Consensus 322 d~~i~v~D~~t 332 (355)
T d2bbkh_ 322 DKTLYIHDAES 332 (355)
T ss_dssp TTEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 99999999954
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.6e-11 Score=134.51 Aligned_cols=264 Identities=14% Similarity=0.137 Sum_probs=170.9
Q ss_pred CCCCCceEEecCCCc---------eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEe--eeCCcc
Q 001391 1 MGKKDLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQ--VFHGIR 67 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~---------~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~--~~~~~~ 67 (1088)
++|++|++|++.+.. +.+.|.+|+|+ || +++|+++. ++.|++|++.......++. ......
T Consensus 11 ~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~s--pD----G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 11 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS--PD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC--TT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred CCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEe--CC----CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 368899999986532 45779999999 99 89886655 5999999997654332222 223345
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
+.+++|+ |||+ .++++. +++++.+|+..... .........+...+.++.++| +
T Consensus 85 p~~l~~s-------pDg~---~l~v~~~~~~~v~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~s~---d 138 (333)
T d1ri6a_ 85 LTHISTD-------HQGQ---FVFVGSYNAGNVSVTRLEDGL-------------PVGVVDVVEGLDGCHSANISP---D 138 (333)
T ss_dssp CSEEEEC-------TTSS---EEEEEETTTTEEEEEEEETTE-------------EEEEEEEECCCTTBCCCEECT---T
T ss_pred ceEEEEc-------CCCC---EEeecccCCCceeeecccccc-------------ceecccccCCCccceEEEeee---c
Confidence 7889999 8883 444444 47899999988543 233344456777889999999 9
Q ss_pred CCEEEEEEc-CCcEEEEEcCCCceEEEe-----ccCCceeEEEEeeecCCCCCcEEE-EEecCCeEEEEEeccCccccCC
Q 001391 147 NRSLAIGCS-DNSIRVWDISNSSIILEV-----HSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 147 ~~~lasgs~-Dg~V~iWd~~~~~~~~~~-----~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
++++++++. +..|.+|+.......... ..........+.+ ++++..++ +....+...+|++.....
T Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~---- 211 (333)
T d1ri6a_ 139 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF---HPNEQYAYCVNELNSSVDVWELKDPHG---- 211 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEESSCTTS----
T ss_pred ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEE---eccceeEEeeccccCceEEEeeccccc----
Confidence 998877764 567999998765433221 1222233344554 45555554 445667788888761110
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEE------eCCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcccC
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL------VGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~gh~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~~ 292 (1088)
........ .........+++++++++++. +..++.+.+|++.....
T Consensus 212 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~-- 264 (333)
T d1ri6a_ 212 -------------------------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-- 264 (333)
T ss_dssp -------------------------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--
T ss_pred -------------------------ceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC--
Confidence 01111111 123355778899999987655 45678999999876532
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-CCCcEEEEcC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS 335 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~ 335 (1088)
...+. ....+...+.+++|+ +++|++++ .+++|++|++
T Consensus 265 ---~~~~~--~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 265 ---VLSKE--GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp ---CEEEE--EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred ---EEEEE--EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 12221 333445567889998 67766665 5689999966
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.33 E-value=2.9e-11 Score=133.90 Aligned_cols=281 Identities=9% Similarity=-0.014 Sum_probs=164.2
Q ss_pred CCCceEEecCCCceee-----eeEEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeCC-
Q 001391 3 KKDLSEWRLDVGQYLG-----EISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHG- 65 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~~-----~V~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~~- 65 (1088)
++.|.+||..+++..+ .+..++|| || +++|++.+ ++.|++||..+++.+..+..+..
T Consensus 27 ~~~v~v~D~~tg~~~~~~~~g~~~~~a~S--pD----g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~ 100 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMIDGGFLPNPVVA--DD----GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 100 (355)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEEC--TT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred cCeEEEEECCCCcEEEEEECCCCCceEEc--CC----CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence 4569999999998543 34589999 99 77776532 47899999999999988875432
Q ss_pred -----cceEEEEecccccccCCCccceeeEEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC-----
Q 001391 66 -----IRLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH----- 133 (1088)
Q Consensus 66 -----~~V~~i~~s~~~~~~~~d~~~~~~~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~----- 133 (1088)
.....++|+ ++++ .+++... +..+.+|+.... +.+..+..+..
T Consensus 101 ~~~~~~~~~~~~~s-------~dg~---~~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 155 (355)
T d2bbkh_ 101 RFLVGTYPWMTSLT-------PDGK---TLLFYQFSPAPAVGVVDLEGK---------------AFKRMLDVPDCYHIFP 155 (355)
T ss_dssp CCCBSCCGGGEEEC-------TTSS---EEEEEECSSSCEEEEEETTTT---------------EEEEEEECCSEEEEEE
T ss_pred eeecCCCCceEEEe-------cCCC---eeEEecCCCCceeeeeecCCC---------------cEeeEEecCCcceEee
Confidence 123567788 7873 4444432 678999998753 33333333221
Q ss_pred --cEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 134 --WVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 134 --~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
....+.+++ |+..++.. ..++.+.+++.......... ...... + ..++..++.++.++.+++|++
T Consensus 156 ~~~~~~~~~~~---dg~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~---~~~~~~~~~~~~~~~~~v~~~ 223 (355)
T d2bbkh_ 156 TAPDTFFMHCR---DGSLAKVAFGTEGTPEITHTEVFHPEDEF--LINHPA----Y---SQKAGRLVWPTYTGKIHQIDL 223 (355)
T ss_dssp EETTEEEEEET---TSCEEEEECCSSSCCEEEECCCCSCTTSC--BCSCCE----E---ETTTTEEEEEBTTSEEEEEEC
T ss_pred cCCcceEEEcC---CCCEEEEEecCCCeEEEEecccccceecc--eeeecc----c---cCCCCeEEEecCCCeEEEEec
Confidence 223344555 55444332 22334444444332211000 011111 1 245667888899999999998
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC----------CcE
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD----------RSA 280 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D----------g~v 280 (1088)
..++...... ............+ .......+++++++..++..+.+ +.|
T Consensus 224 ~~~~~~~~~~-------------------~~~~~~~~~~~~~--~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 282 (355)
T d2bbkh_ 224 SSGDAKFLPA-------------------VEALTEAERADGW--RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282 (355)
T ss_dssp TTSSCEECCC-------------------EESSCHHHHHTTE--EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred CCCcEEEEec-------------------cCCcccceEeeee--eccceEEEEEeCCCCeEEEEeccCCceeecCCCCeE
Confidence 8322111000 0000000000000 01223457889999887765443 369
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC--EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS--FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~--~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~ 355 (1088)
.+||..+++. +. . ..+...+.+++|+ +. ++++++.|++|++||. +++.+.++..+.. .-..+.
T Consensus 283 ~v~d~~t~~~--------~~--~-~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~-~p~~i~ 350 (355)
T d2bbkh_ 283 VVLDAKTGER--------LA--K-FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH-GPQVIT 350 (355)
T ss_dssp EEEETTTCCE--------EE--E-EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS-SCCEEE
T ss_pred EEEeCCCCcE--------EE--E-ecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC-CccEEE
Confidence 9999988643 22 2 2234567899998 33 4667788999999999 8999999976644 344555
Q ss_pred EcCC
Q 001391 356 YDSL 359 (1088)
Q Consensus 356 ~~~d 359 (1088)
+.++
T Consensus 351 ~~d~ 354 (355)
T d2bbkh_ 351 TADM 354 (355)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 4443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.14 E-value=1.1e-10 Score=130.34 Aligned_cols=288 Identities=8% Similarity=-0.118 Sum_probs=166.9
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe--C--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~--d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.++...++.. ++ +.+.+++... + ..|.+||..+++.+.++..+.. ..++|+ ||| ..++
T Consensus 19 ~g~~~~~a~~--~~--~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~---~~~a~s-------pDg----~~i~ 80 (368)
T d1mdah_ 19 DGSSCDHGPG--AI--SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL---SLAVAG-------HSG----SDFA 80 (368)
T ss_dssp CCCCBCCCCC--CC--TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT---CEEEEC-------TTS----SCEE
T ss_pred CCCccccccC--CC--CcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC---CcceEC-------CCC----CEEE
Confidence 3555556666 66 2233444422 2 4577889999999998887543 368899 888 3443
Q ss_pred EEC-----------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-------CcEEEEEEecccCCCCEEEEEE
Q 001391 93 LFG-----------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-------HWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 93 ~~g-----------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-------~~I~~v~f~p~~~d~~~lasgs 154 (1088)
+.. ++.|++||..+. +.+..+..+. .....++|+| ||++|+++.
T Consensus 81 ~~~~~~~~~~~g~~d~~v~v~D~~t~---------------~~~~~i~~p~~~~~~~g~~p~~~a~Sp---DGk~l~va~ 142 (368)
T d1mdah_ 81 LASTSFARSAKGKRTDYVEVFDPVTF---------------LPIADIELPDAPRFSVGPRVHIIGNCA---SSACLLFFL 142 (368)
T ss_dssp EEEEEETTTTSSSEEEEEEEECTTTC---------------CEEEEEEETTSCSCCBSCCTTSEEECT---TSSCEEEEE
T ss_pred EEcccCccccccccCCeEEEEECCCC---------------cEeeeecCCccceecccCCccceEECC---CCCEEEEEe
Confidence 321 567999998753 3333332221 2234689999 999888775
Q ss_pred -cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 155 -SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 155 -~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
.++.+.+||+.+++.+..+..+....++. .....+++.+.||.+.+|++........
T Consensus 143 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~Dg~~~~~~~~~~~~~~~--------------- 200 (368)
T d1mdah_ 143 FGSSAAAGLSVPGASDDQLTKSASCFHIHP-------GAAATHYLGSCPASLAASDLAAAPAAAG--------------- 200 (368)
T ss_dssp CSSSCEEEEEETTTEEEEEEECSSCCCCEE-------EETTEEECCCCTTSCEEEECCSSCCCCE---------------
T ss_pred CCCCeEEEEECCCCcEeEEeeccCcceEcc-------CCCceEEEEcCCCCEEEEEecCCceeee---------------
Confidence 57999999999999988876554332222 1234667778889999888762211100
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC--CCC---ceeeeceeeeccC
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD--SDS---IEEVGSSVLYGHN 308 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~--~~~---~~~i~~~~~~~h~ 308 (1088)
......+..+...+..+.+.+++..+.+.+ +.+.+++........ ... ..... .......
T Consensus 201 ------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g 265 (368)
T d1mdah_ 201 ------------IVGAQCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKA-DNFRSAG 265 (368)
T ss_dssp ------------ECCCCSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHH-TTEEECS
T ss_pred ------------eeecccccccccceeecccccCcEEEEecC--CCEEEEeecCCceEEEeecccccceeee-eeecCCC
Confidence 000011223444555666777766555443 345555555432200 000 00000 0011111
Q ss_pred cceEEEEECCCEEEEEeCC---------CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEE
Q 001391 309 ARVWDCCLTDSFIITAGED---------CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 309 ~~I~~v~~~~~~l~sg~~D---------g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~--~l~tg~~Dg~I~iwd 376 (1088)
.....+...+..++....+ ..+.+||. +++.+..+... . .+.+++|+|||+ +++++..|++|++||
T Consensus 266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~-~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-H-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-C-ceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 1122222224444333211 35889999 77877776543 3 588999999997 346777899999999
Q ss_pred cCC
Q 001391 377 FQA 379 (1088)
Q Consensus 377 ~~~ 379 (1088)
..+
T Consensus 344 ~~t 346 (368)
T d1mdah_ 344 AAS 346 (368)
T ss_dssp SSS
T ss_pred CCC
Confidence 853
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.99 E-value=6.4e-11 Score=132.03 Aligned_cols=291 Identities=10% Similarity=-0.091 Sum_probs=174.3
Q ss_pred CCCCCceEEecCCCceeee-------------------------------------eEEEEEeccCCCCCCCCEEEEEe-
Q 001391 1 MGKKDLSEWRLDVGQYLGE-------------------------------------ISALCFVHLPSHLSSLPFLLAGS- 42 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~~~~-------------------------------------V~~v~fs~~pd~~~~~~~laag~- 42 (1088)
|++|.|++|++.+++.... .....++ || |++|.+..
T Consensus 18 g~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gt--pD----Gr~lfV~d~ 91 (441)
T d1qnia2 18 GHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGR--YD----GKYLFINDK 91 (441)
T ss_dssp BTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTE--EE----EEEEEEEET
T ss_pred CCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceeccc--CC----CCEEEEEcC
Confidence 4688999999887763222 2334456 77 88997765
Q ss_pred -CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEE------------------EE
Q 001391 43 -GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL------------------FE 103 (1088)
Q Consensus 43 -d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~i------------------w~ 103 (1088)
+.+|.++|+.++++...+....+..+|+++|+ |+|+ ..++++.++..+.+ +|
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~s-------pdg~--t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD 162 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQ-------KVPK--TNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAID 162 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEEC-------CSSB--CCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEE
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEe-------ccCC--EEEEEeccCCcccccCcccccccccccceEEeec
Confidence 58999999999999888887666789999999 6763 23555555554432 33
Q ss_pred eccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-cEEEEEcCCCceEEEeccCCceeEE
Q 001391 104 LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-SIRVWDISNSSIILEVHSPERCLLY 182 (1088)
Q Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg-~V~iWd~~~~~~~~~~~~~~~~~~~ 182 (1088)
..+ .+....... ......++|+| +|+++++.+.+. .+..++..+......+...... .
T Consensus 163 ~~t---------------~~v~~qI~v-~~~p~~v~~sp---dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p--~ 221 (441)
T d1qnia2 163 AET---------------MDVAWQVIV-DGNLDNTDADY---TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE--R 221 (441)
T ss_dssp TTT---------------CSEEEEEEE-SSCCCCEEECS---SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH--H
T ss_pred Ccc---------------ceeeEEEec-CCCccceEECC---CCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc--c
Confidence 322 222222221 23467899999 999888877543 3333343333322221100000 0
Q ss_pred EEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEE
Q 001391 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI 262 (1088)
Q Consensus 183 s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v 262 (1088)
... ..+++.++..+ .++.+.+++.. ....++.+..++. ...+
T Consensus 222 ~~~---~~~dGk~~~v~-~~~v~vvd~~~---------------------------------~~~v~~~IPvgks-PhGv 263 (441)
T d1qnia2 222 IAA---AVKAGNFKTIG-DSKVPVVDGRG---------------------------------ESEFTRYIPVPKN-PHGL 263 (441)
T ss_dssp HHH---HHHTTCCBCCT-TCCCCEEECSS---------------------------------SCSSEEEECCBSS-CCCE
T ss_pred eEE---EecCCCEEEeC-CCCcEEEEccc---------------------------------CCceEEEEeCCCC-ccCc
Confidence 001 13455555443 34566666554 3445556665544 6889
Q ss_pred EEcCCCCEE-EEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc---CcceEEEEEC--CCEEEEEeCCCcEEEEcCC
Q 001391 263 EWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---NARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 263 ~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h---~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.++|||+++ +++..+++|.+||+.+....-........ .+.++ .-.....+|. +..+.+..-|..|..|++.
T Consensus 264 ~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~--~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 264 NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD--TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG--GEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred eECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce--EEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence 999999987 55678999999998763321000000000 11111 1224556787 4567778899999999972
Q ss_pred -------C----ceeEEE-----cccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 337 -------G----KQLKMI-----KEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 337 -------~----~~~~~~-----~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
+ ..+..+ .+|.. .+.+.+++|||++|++++.
T Consensus 342 ~~~~~~~~~~~~~v~~~~~v~y~~GH~~-~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 342 DAIKHYNGDRVNYIRQKLDVQYQPGHNH-ASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp HHHHHHTTCCCCCEEEEEECSSCEEEEE-ETTTTSTTCCCCEEEEEES
T ss_pred hhhhhhccCCCceeEeccccccCCCCCc-cccccccCCCCcEEEecCc
Confidence 1 233344 34544 3556678999999999953
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.99 E-value=1.7e-07 Score=107.55 Aligned_cols=140 Identities=10% Similarity=0.003 Sum_probs=99.2
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-----eCCCCCEEEEEEc
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWS 265 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gh~~~V~~v~~s 265 (1088)
+++.++.. .++.|.+||+. +++....+ ..|...|.++.||
T Consensus 26 ~d~~~~~~--~~~~~~~~~~~---------------------------------t~~~~~~~~~~~~~~~~~~i~~~~~S 70 (470)
T d2bgra1 26 SDHEYLYK--QENNILVFNAE---------------------------------YGNSSVFLENSTFDEFGHSINDYSIS 70 (470)
T ss_dssp SSSEEEEE--SSSCEEEEETT---------------------------------TCCEEEEECTTTTTTSSSCCCEEEEC
T ss_pred CCCEEEEE--cCCcEEEEECC---------------------------------CCCEEEEEchhhhhhccCccceeEEC
Confidence 56666654 47889999998 33333323 3456789999999
Q ss_pred CCCCEEEEEEC---------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEc
Q 001391 266 SCGSKLVSVSD---------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 266 p~g~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd 334 (1088)
|||++|+.++. ++.+.+||+.+++. ..+..|...+..+.|+ +..|+.. .++.+.+|+
T Consensus 71 pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-----------~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~ 138 (470)
T d2bgra1 71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-----------ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKI 138 (470)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-----------CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEES
T ss_pred CCCCEEEEEECCcceeeeccCceEEEEECCCCcc-----------cccccCCccccccccccCcceeeEe-ecccceEEE
Confidence 99999998754 46788999998643 2567788889999999 5677774 577899999
Q ss_pred C-CCceeEEEcccCC-----------------CCeEEEEEcCCCCEEEEEeCCCC-EEEEEc
Q 001391 335 S-DGKQLKMIKEHIG-----------------RGIWRCLYDSLSSLLVTAGFDSA-IKVHQF 377 (1088)
Q Consensus 335 ~-~~~~~~~~~~h~~-----------------~~V~~l~~~~dg~~l~tg~~Dg~-I~iwd~ 377 (1088)
. .++..+....+.. .....+.|+|||+.|+....|.+ +..|.+
T Consensus 139 ~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred CCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 8 4544433322111 02345779999999999887654 666655
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.97 E-value=9.7e-09 Score=118.32 Aligned_cols=135 Identities=10% Similarity=0.046 Sum_probs=92.5
Q ss_pred CCCCceEEecCCCce------------eeeeEEEEEeccCCCCCCCCEEEEEeC----------CeEEEEECCCCeeEEE
Q 001391 2 GKKDLSEWRLDVGQY------------LGEISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRP 59 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~------------~~~V~~v~fs~~pd~~~~~~~laag~d----------~~I~vwd~~tg~~~~~ 59 (1088)
+|+.+.+||+.+++. ...|.++.|| || +++||.+++ +.+.|||+++++. ..
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S--pD----g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~ 106 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PD----GQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-IT 106 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CC
T ss_pred cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC--CC----CCEEEEEECCcceeeeccCceEEEEECCCCcc-cc
Confidence 478899999999972 3568999999 99 899888653 5789999999875 44
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC---------
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--------- 130 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 130 (1088)
+..+.. .+..+.|| ||| ..+|...++.+.+|+............ ...-..+.+
T Consensus 107 l~~~~~-~~~~~~~S-------PDG----~~ia~~~~~~l~~~~~~~g~~~~~t~~------~~~~~~~~g~~d~~~~~~ 168 (470)
T d2bgra1 107 EERIPN-NTQWVTWS-------PVG----HKLAYVWNNDIYVKIEPNLPSYRITWT------GKEDIIYNGITDWVYEEE 168 (470)
T ss_dssp SSCCCT-TEEEEEEC-------SST----TCEEEEETTEEEEESSTTSCCEECCSC------CBTTTEEESBCCHHHHHH
T ss_pred cccCCc-cccccccc-------cCc----ceeeEeecccceEEECCCCceeeeeec------cCCCcccccccceeeeee
Confidence 555444 69999999 898 677778889999998875431000000 000000111
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCc-EEEEEc
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNS-IRVWDI 164 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~-V~iWd~ 164 (1088)
+.+....+.|+| ||++||....|.+ +..|.+
T Consensus 169 ~~~~~~~~~wSP---DGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 169 VFSAYSALWWSP---NGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp TSSSSBCEEECT---TSSEEEEEEEECTTCCEEEE
T ss_pred ecCCccccEECC---CCCccceeEecCCcCceEEE
Confidence 223446688999 9999999876544 554443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.96 E-value=1.4e-08 Score=112.80 Aligned_cols=276 Identities=9% Similarity=-0.002 Sum_probs=157.5
Q ss_pred CceEEecCCCceeee-----eEEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeCC---
Q 001391 5 DLSEWRLDVGQYLGE-----ISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHG--- 65 (1088)
Q Consensus 5 ~i~iWdl~~g~~~~~-----V~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~~--- 65 (1088)
.+.+||..+++..+. ...++|+ || +++|++.+ +++|++||..+++++..+..+..
T Consensus 47 ~~~~~d~~~~~~~~~~~~~~~~~~a~s--pD----g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~ 120 (368)
T d1mdah_ 47 ENWVSCAGCGVTLGHSLGAFLSLAVAG--HS----GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEEC--TT----SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEeCCCCcEEEEEeCCCCCcceEC--CC----CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcccee
Confidence 366779999884332 2368999 99 88888744 35799999999999998876433
Q ss_pred ---cceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 66 ---IRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 66 ---~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
...++++|+ |||+ .++++. +++.+.+||+... +....+..+.... +.
T Consensus 121 ~~g~~p~~~a~S-------pDGk---~l~va~~~~~~v~~~d~~~~---------------~~~~~~~~~~~~~----~~ 171 (368)
T d1mdah_ 121 SVGPRVHIIGNC-------ASSA---CLLFFLFGSSAAAGLSVPGA---------------SDDQLTKSASCFH----IH 171 (368)
T ss_dssp CBSCCTTSEEEC-------TTSS---CEEEEECSSSCEEEEEETTT---------------EEEEEEECSSCCC----CE
T ss_pred cccCCccceEEC-------CCCC---EEEEEeCCCCeEEEEECCCC---------------cEeEEeeccCcce----Ec
Confidence 224578899 8884 444443 4799999999853 3444444333221 12
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcCCCceEEEec-----cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH-----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~-----~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
|. ....++..+.||.+.+|++.......... ............ .+++..+.+ ..+.+.++++..+...
T Consensus 172 ~~--~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~--~~~~v~~~~~~~~~~~ 244 (368)
T d1mdah_ 172 PG--AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA---NYPGMLVWA--VASSILQGDIPAAGAT 244 (368)
T ss_dssp EE--ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEE---TTTTEEEEC--BSSCCEEEECCSSCCE
T ss_pred cC--CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccc---ccCcEEEEe--cCCCEEEEeecCCceE
Confidence 20 33456666778888888876543322211 111111111111 344544443 3466667776522111
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC---------CcEEEEEcCC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---------RSARIWEVRA 287 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D---------g~v~iWd~~~ 287 (1088)
.... +............. .+....++++|++..+.....+ ..|.+||..+
T Consensus 245 ~~~~-------------------~~~~~~~~~~~~~~--~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 245 MKAA-------------------IDGNESGRKADNFR--SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EECC-------------------CCSSCTHHHHTTEE--ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEee-------------------cccccceeeeeeec--CCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 0000 00000000000000 0112346788888876554322 3588999988
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC--CC--EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS--FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~--~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
++. +. ...+...+.+++|+ ++ +++++..|++|++||. +++.+..+..... -..|++
T Consensus 304 ~~~--------~~---~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~--P~~l~~ 364 (368)
T d1mdah_ 304 GQT--------SG---PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG--PESLSV 364 (368)
T ss_dssp CCE--------EE---CCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC--CCEEEC
T ss_pred CcE--------eE---EecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC--CCEEEE
Confidence 643 22 22234568889998 33 3567788999999999 8999988875543 344444
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.93 E-value=3.1e-09 Score=118.17 Aligned_cols=347 Identities=7% Similarity=-0.082 Sum_probs=182.3
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC---CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS---DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
.+++|+.+|+|.+|++.+.+....+. ++++++... .+...++... ......-..|...+....++|||++|
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~Ip---Vfspd~~~g~g~~~es~~vl~~---~~~~~~gd~hhP~~s~t~gtpDGr~l 86 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIP---VFNVDSATGWGITNESKEILGG---DQQYLNGDCHHPHISMTDGRYDGKYL 86 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEEC---SSSBCTTTCTTTSHHHHHHHCS---SSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEE---eEcCCCCEEEEECCccceEEec---ccccccCcccCCCcceecccCCCCEE
Confidence 46788899999999998655433221 233333222 2211111111 00111112355556666678999988
Q ss_pred EEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC--EEEEEeCCCc-----------------
Q 001391 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS--FIITAGEDCT----------------- 329 (1088)
Q Consensus 272 ~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~--~l~sg~~Dg~----------------- 329 (1088)
... ..+.+|.++|+.+.+. .+ ....++...+..++|+ ++ +++..+++..
T Consensus 87 fV~d~~~~rVavIDl~t~k~--------~~-ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~ 157 (441)
T d1qnia2 87 FINDKANTRVARIRLDIMKT--------DK-ITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM 157 (441)
T ss_dssp EEEETTTTEEEEEETTTTEE--------EE-EEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred EEEcCCCCEEEEEECCCCcE--------ee-EEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence 554 5778999999998533 22 1234566778899998 43 5555554432
Q ss_pred EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC-EEEEEcCCCCCCcccCCccccccCCCcceEEeeeCC
Q 001391 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA-IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
+..+|. +.+...++.... ....++++|+|+++++.+.+.. +..++..+... ...... .
T Consensus 158 ~~~iD~~t~~v~~qI~v~~--~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~---------------~d~i~v--~- 217 (441)
T d1qnia2 158 FTAIDAETMDVAWQVIVDG--NLDNTDADYTGKYATSTCYNSERAVDLAGTMRND---------------RDWVVV--F- 217 (441)
T ss_dssp EEEEETTTCSEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS---------------BCEEEE--E-
T ss_pred EEeecCccceeeEEEecCC--CccceEECCCCCEEEEEecCCCceEEEeccCcce---------------EEEEEe--C-
Confidence 244665 445555554433 3678999999999888876532 22222211100 000000 0
Q ss_pred CccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCe-
Q 001391 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDW- 486 (1088)
Q Consensus 408 ~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~- 486 (1088)
.....+++.++|+++....++.+. +.......... ..+.+..-..+++.+ ++++
T Consensus 218 ------------n~p~~~~~~~dGk~~~v~~~~v~v---vd~~~~~~v~~--~IPvgksPhGv~vSP--------DGkyl 272 (441)
T d1qnia2 218 ------------NVERIAAAVKAGNFKTIGDSKVPV---VDGRGESEFTR--YIPVPKNPHGLNTSP--------DGKYF 272 (441)
T ss_dssp ------------EHHHHHHHHHTTCCBCCTTCCCCE---EECSSSCSSEE--EECCBSSCCCEEECT--------TSCEE
T ss_pred ------------CccceEEEecCCCEEEeCCCCcEE---EEcccCCceEE--EEeCCCCccCceECC--------CCCEE
Confidence 011223355666655544444433 22211111111 111112223344443 4454
Q ss_pred EEEecCCCCEEEEEEcCCCc--CcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCC
Q 001391 487 VALGDGKGNMTIVRVVGDVH--TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS 564 (1088)
Q Consensus 487 la~g~~dg~I~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~ 564 (1088)
++++..++++.+||+..-.. ..+.........+.+..+......|.++|..+.+...|..|..|++........-+..
T Consensus 273 ~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~ 352 (441)
T d1qnia2 273 IANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRV 352 (441)
T ss_dssp EEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCC
T ss_pred EEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCC
Confidence 56788899999999865221 0011111111111222122223468889988889999999999998522100000000
Q ss_pred cccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCC
Q 001391 565 KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601 (1088)
Q Consensus 565 ~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~d 601 (1088)
....-.+.-.|..+|...+.+.+++|||++|+++++-
T Consensus 353 ~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~ 389 (441)
T d1qnia2 353 NYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKF 389 (441)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESC
T ss_pred ceeEeccccccCCCCCccccccccCCCCcEEEecCcc
Confidence 0000112223456899889999999999999999653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.52 E-value=2.6e-05 Score=81.84 Aligned_cols=237 Identities=10% Similarity=0.056 Sum_probs=151.4
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC---Cce--eEEEEeeecCCCCCcEEEE-EecCCeEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERC--LLYSMKLWGDNLEALRIAS-GTIYNEII 206 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~---~~~--~~~s~~~~~~s~~~~~l~s-g~~dg~I~ 206 (1088)
.....|++.| +++++++-...+.|++||.+ ++.+..+... ... ....+.+. ...+..+++ .+.++.|.
T Consensus 23 ~~P~gvavd~---dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~i~ 96 (279)
T d1q7fa_ 23 TEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTHQIQ 96 (279)
T ss_dssp SCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGCEEE
T ss_pred CCccEEEEcC---CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccc--ccccccceeccCCccccc
Confidence 3568999999 99987776778899999964 6666555321 111 11112221 122333333 33445666
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~ 285 (1088)
+++.. +.....+. ........+++.+++..+++....+.+.+++.
T Consensus 97 ~~~~~----------------------------------g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~ 142 (279)
T d1q7fa_ 97 IYNQY----------------------------------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ 142 (279)
T ss_dssp EECTT----------------------------------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred ccccc----------------------------------ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc
Confidence 66543 33333332 34566789999999998888777777888776
Q ss_pred CCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcc--cCCCCeEEEEEcCCCC
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~--h~~~~V~~l~~~~dg~ 361 (1088)
... .+..+....+......+++. +.++++....+.|++|+.+|+.+.++.. ... ....|++.++|+
T Consensus 143 ~g~---------~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~-~P~giavD~~G~ 212 (279)
T d1q7fa_ 143 NGN---------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITN-YPIGVGINSNGE 212 (279)
T ss_dssp TSC---------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSC-SEEEEEECTTCC
T ss_pred CCc---------eeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeeccccccc-CCcccccccCCe
Confidence 542 22211233455667888887 5677777888999999999998888742 333 478999999999
Q ss_pred EEEEEeC-CCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCC
Q 001391 362 LLVTAGF-DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1088)
Q Consensus 362 ~l~tg~~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g 440 (1088)
++++-.. ++.|.+++.+++.+.++ ..+ ........+++.++|.++++..+.
T Consensus 213 i~Vad~~~~~~v~~f~~~G~~~~~~------------------~~~----------~~~~~p~~vav~~dG~l~V~~~n~ 264 (279)
T d1q7fa_ 213 ILIADNHNNFNLTIFTQDGQLISAL------------------ESK----------VKHAQCFDVALMDDGSVVLASKDY 264 (279)
T ss_dssp EEEEECSSSCEEEEECTTSCEEEEE------------------EES----------SCCSCEEEEEEETTTEEEEEETTT
T ss_pred EEEEECCCCcEEEEECCCCCEEEEE------------------eCC----------CCCCCEeEEEEeCCCcEEEEeCCC
Confidence 7777544 45688888755422211 101 111246788999999999888777
Q ss_pred eEEEEEe
Q 001391 441 YLYHTKL 447 (1088)
Q Consensus 441 ~i~~~~~ 447 (1088)
.|..++.
T Consensus 265 ~v~~fr~ 271 (279)
T d1q7fa_ 265 RLYIYRY 271 (279)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 7775554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.34 E-value=0.00018 Score=75.23 Aligned_cols=234 Identities=8% Similarity=0.112 Sum_probs=147.3
Q ss_pred eEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeec------cCCCCcEEEEEE
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL------PRLSHWVFDVCF 140 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l------~~h~~~I~~v~f 140 (1088)
-.+|+++ +++ .++++ .+++.|++||.+. +.+..+ .+....-..+++
T Consensus 25 P~gvavd-------~dg----~i~VaD~~n~rI~v~d~~G----------------~~~~~~~~~~~~~~~~~~p~~~~~ 77 (279)
T d1q7fa_ 25 PSGVAVN-------AQN----DIIVADTNNHRIQIFDKEG----------------RFKFQFGECGKRDSQLLYPNRVAV 77 (279)
T ss_dssp EEEEEEC-------TTC----CEEEEEGGGTEEEEECTTS----------------CEEEEECCBSSSTTCBSSEEEEEE
T ss_pred ccEEEEc-------CCC----CEEEEECCCCEEEEEeCCC----------------CEEEEecccCCCcccccccccccc
Confidence 5789998 776 44444 4578999998652 122211 112234456666
Q ss_pred ecccCC-CCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccC
Q 001391 141 LKVCNG-NRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 141 ~p~~~d-~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~ 218 (1088)
.+ + +..+++. +.++.|..++. .++....+..........+++ .+++.++++....+.+.+++..
T Consensus 78 ~~---~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~av---d~~G~i~v~~~~~~~~~~~~~~------- 143 (279)
T d1q7fa_ 78 VR---NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTV---DNKGRIIVVECKVMRVIIFDQN------- 143 (279)
T ss_dssp ET---TTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEE---CTTSCEEEEETTTTEEEEECTT-------
T ss_pred cc---cccccceeccCCccccccccc-cccceeecCCCcccccceecc---ccCCcEEEEeeccceeeEeccC-------
Confidence 65 4 3344433 34556777765 455555554333222333443 4566666666666666666644
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEE--eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
+..+..+ ..+......+++.+++..+++....+.|++||....
T Consensus 144 ---------------------------g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-------- 188 (279)
T d1q7fa_ 144 ---------------------------GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-------- 188 (279)
T ss_dssp ---------------------------SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC--------
T ss_pred ---------------------------CceeecccccccccccceeeeccceeEEeeeccccceeeeecCCc--------
Confidence 3333333 346677889999999998888888999999997653
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeC-CCcEEEEcCCCceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGSDGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg~i~vWd~~~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
.+..+...++......+++. ++++++-.. ++.|.+|+.+|+.+..+.... ....+.+++.++|.+++ +..+..|
T Consensus 189 -~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v 266 (279)
T d1q7fa_ 189 -YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRL 266 (279)
T ss_dssp -EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEE
T ss_pred -eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeE
Confidence 22111223445567888997 566665443 457999999999887775432 12478999999997555 5678999
Q ss_pred EEEEcCC
Q 001391 373 KVHQFQA 379 (1088)
Q Consensus 373 ~iwd~~~ 379 (1088)
++|....
T Consensus 267 ~~fr~~~ 273 (279)
T d1q7fa_ 267 YIYRYVQ 273 (279)
T ss_dssp EEEECSC
T ss_pred EEEEeee
Confidence 9999853
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.25 E-value=0.00011 Score=78.00 Aligned_cols=250 Identities=10% Similarity=-0.004 Sum_probs=146.7
Q ss_pred CCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccC
Q 001391 52 EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR 130 (1088)
Q Consensus 52 ~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (1088)
...+.++.+.. +..+.+++++ ||| .++++. .+++|..|+... + ...+..
T Consensus 16 ~~~~v~~~~p~--~~~~e~iAv~-------pdG----~l~vt~~~~~~I~~i~p~g----------------~-~~~~~~ 65 (302)
T d2p4oa1 16 APAKIITSFPV--NTFLENLASA-------PDG----TIFVTNHEVGEIVSITPDG----------------N-QQIHAT 65 (302)
T ss_dssp CCEEEEEEECT--TCCEEEEEEC-------TTS----CEEEEETTTTEEEEECTTC----------------C-EEEEEE
T ss_pred CcccEEEECCC--CCCcCCEEEC-------CCC----CEEEEeCCCCEEEEEeCCC----------------C-EEEEEc
Confidence 34455666653 2248899999 888 455554 478776665331 1 122334
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
....+.+++|.| +|+++++...++.+..|+..... .......+.......+.+ .+++.++++...++.+..+
T Consensus 66 ~~~~~~gla~~~---dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~---~~~g~~~v~~~~~~~i~~~ 139 (302)
T d2p4oa1 66 VEGKVSGLAFTS---NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP---LSDTQYLTADSYRGAIWLI 139 (302)
T ss_dssp CSSEEEEEEECT---TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE---SSSSEEEEEETTTTEEEEE
T ss_pred CCCCcceEEEcC---CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEE---ccCCCEEeeccccccceee
Confidence 557899999999 99998888888888888875432 222222233333444544 5678888887778888777
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
+..... ..++......... ...........+.+.. +..+++.+..+.|..++....
T Consensus 140 ~~~~~~----------------------~~~~~~~~~~~~~-~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~ 195 (302)
T d2p4oa1 140 DVVQPS----------------------GSIWLEHPMLARS-NSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDST 195 (302)
T ss_dssp ETTTTE----------------------EEEEEECGGGSCS-STTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTT
T ss_pred eccCCc----------------------ceeEecCCcccee-eccCcccccccccccC-CceeeecCCCCeEEecccccc
Confidence 766111 1111000000000 0011223455666653 345566777888888887664
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccC-CCCeEEEEE---cCCCCE
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI-GRGIWRCLY---DSLSSL 362 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~-~~~V~~l~~---~~dg~~ 362 (1088)
.. .... ...........+++. +.++++...++.|..++.+++......... ....++++| .+|++.
T Consensus 196 ~~-----~~~~---~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~ 267 (302)
T d2p4oa1 196 DK-----PGEP---EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTA 267 (302)
T ss_dssp SC-----BCCC---EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred cc-----cccc---ccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCE
Confidence 32 1111 111222334568886 677777778899999998887654443221 125889999 677887
Q ss_pred EEEEeCC
Q 001391 363 LVTAGFD 369 (1088)
Q Consensus 363 l~tg~~D 369 (1088)
|+.++..
T Consensus 268 Lyvtt~~ 274 (302)
T d2p4oa1 268 IYVVTNG 274 (302)
T ss_dssp EEEEECT
T ss_pred EEEECCC
Confidence 7666544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.25 E-value=0.00029 Score=74.53 Aligned_cols=214 Identities=9% Similarity=-0.077 Sum_probs=127.0
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+.+..+.. ...+..++++|||+++++...+++|+.|+..... + .+......+.+++|. +.++++.
T Consensus 19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-------~-----~~~~~~~~~~gla~~~dG~l~v~~ 85 (302)
T d2p4oa1 19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-------Q-----IHATVEGKVSGLAFTSNGDLVATG 85 (302)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------E-----EEEECSSEEEEEEECTTSCEEEEE
T ss_pred cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-------E-----EEEcCCCCcceEEEcCCCCeEEEe
Confidence 44455543 2368899999999999999999988888765421 1 444555778999998 6788888
Q ss_pred eCCCcEEEEcC---CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceE
Q 001391 325 GEDCTCRVWGS---DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (1088)
Q Consensus 325 ~~Dg~i~vWd~---~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1088)
..++.+..|+. .+................+++.++++++++-+.++.+..++..+.... ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~----------------~~ 149 (302)
T d2p4oa1 86 WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS----------------IW 149 (302)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE----------------EE
T ss_pred cCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcce----------------eE
Confidence 88888888887 223222222222335889999999999888888888887777542110 11
Q ss_pred EeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcC
Q 001391 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPC 481 (1088)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~ 481 (1088)
.. ..................+.+..+..+++.+..+.++.+................. ...-.+++.
T Consensus 150 ~~---~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~pdgia~d-------- 216 (302)
T d2p4oa1 150 LE---HPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFD-------- 216 (302)
T ss_dssp EE---CGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEB--------
T ss_pred ec---CCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCC--CCCcceEEC--------
Confidence 00 00000011111223456677766555666677888887766544322211111111 111113332
Q ss_pred CCCCeEEEecCCCCEEEEEEc
Q 001391 482 GIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 482 ~~~~~la~g~~dg~I~iw~~~ 502 (1088)
++++++++...++.|..++.+
T Consensus 217 ~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 217 VEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp TTCCEEEECBTTCCEEEECTT
T ss_pred CCCCEEEEEcCCCcEEEECCC
Confidence 244677777777888777544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.21 E-value=0.00023 Score=77.53 Aligned_cols=280 Identities=8% Similarity=-0.065 Sum_probs=141.7
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC-CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE--C
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF--G 95 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~--g 95 (1088)
+++.|+|+ |+ +++|.+...+.+..|.+.. +..+.......+.....+.++ ++++ ..++++. +
T Consensus 41 ~~s~la~s--~d----~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~-------~~~~--~~~v~~a~~~ 105 (365)
T d1jofa_ 41 PISWMTFD--HE----RKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDAD-------TNTR--AIFLLAAKQP 105 (365)
T ss_dssp CCSEEEEC--TT----SSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTT-------SCCE--EEEEEECSST
T ss_pred CCCEEEEc--CC----CCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEEC-------CCCC--EEEEEEecCC
Confidence 35689999 99 8999888877888887753 333333222222234455555 7762 1233333 2
Q ss_pred CCEEEEEEeccCCCCCCCCCCc--cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCC-ceE-
Q 001391 96 EKRVKLFELNFELSPNSQYQPE--TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS-SII- 170 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~--~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~-~~~- 170 (1088)
.++|..+.+.........+..+ .................++++.|+| ||++|+++.. ...|.+|+.... ...
T Consensus 106 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP---dG~~l~v~d~g~d~v~~~~~~~~g~~~~ 182 (365)
T d1jofa_ 106 PYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP---TETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp TCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred CCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC---CCCEEEEeeCCCCEEEEEEccCCCceee
Confidence 4666665554221000000000 0000001111112234588999999 9998887753 457888876543 222
Q ss_pred -EEec-cCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 171 -LEVH-SPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 171 -~~~~-~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
.... .........+.+ +|++.+++. ...+++|.+|++.......... ...+.+.... ...
T Consensus 183 ~~~~~~~~~g~gPr~i~f---~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~ 245 (365)
T d1jofa_ 183 VGSVDAPDPGDHPRWVAM---HPTGNYLYALMEAGNRICEYVIDPATHMPVYT-------------HHSFPLIPPG-IPD 245 (365)
T ss_dssp EEEEECSSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-------------EEEEESSCTT-CCC
T ss_pred ccceeecCCCCceEEEEE---CCCCceEEEeccCCCEEEEEEecCCCceEEEE-------------eeeecccccc-ccc
Confidence 1221 222334455665 577877754 5568999999987322110000 0000000000 000
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEEC-C-----CcEEEEEcCCCcccCCCCceee-eceeeeccCcceEEEEEC---
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSD-D-----RSARIWEVRAEYWKDSDSIEEV-GSSVLYGHNARVWDCCLT--- 317 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-D-----g~v~iWd~~~~~~~~~~~~~~i-~~~~~~~h~~~I~~v~~~--- 317 (1088)
.......+......+.++|+|++|+++.. + ..|..|++..... .... ..............++++
T Consensus 246 ~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~-----~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-----IEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-----EEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred cccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc-----eeeEeEeeEEEcCCCCccEEEecCCC
Confidence 00000123345677899999999877643 2 2366777665321 1111 000111223345667775
Q ss_pred CCEEEEE-eCCCcEEEEcCCCc
Q 001391 318 DSFIITA-GEDCTCRVWGSDGK 338 (1088)
Q Consensus 318 ~~~l~sg-~~Dg~i~vWd~~~~ 338 (1088)
+.+|+.+ ..++.|.+|+.+++
T Consensus 321 G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETT
T ss_pred CCEEEEEeCCCCeEEEEEEeCC
Confidence 5655555 57799999998444
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.19 E-value=8.9e-05 Score=76.69 Aligned_cols=234 Identities=9% Similarity=0.015 Sum_probs=136.7
Q ss_pred eEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
-++|++. ++|. .+++..+ .+.+..++..... .......+. .....+++.+ +
T Consensus 16 P~~vavd-------~dG~---i~v~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~-~~p~gvav~~---~ 67 (260)
T d1rwia_ 16 PSGVAVD-------SAGN---VYVTSEGMYGRVVKLATGSTG--------------TTVLPFNGL-YQPQGLAVDG---A 67 (260)
T ss_dssp EEEEEEC-------TTCC---EEEEECSSSCEEEEEC----C--------------EEECCCCSC-CSCCCEEECT---T
T ss_pred CCEEEEc-------CCCC---EEEEEcCCCCEEEEEcCCCce--------------EEEeccCCc-cCceEEEEcC---C
Confidence 4788888 7772 3444444 3566666544221 112222221 2357789998 8
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
+.+.++....+.+++++-.+...+..... ......+++ .+++.++++-...+.+..++..
T Consensus 68 g~i~v~d~~~~~i~~~~~~~~~~~~~~~~--~~~p~~iav---d~~g~i~v~d~~~~~~~~~~~~--------------- 127 (260)
T d1rwia_ 68 GTVYVTDFNNRVVTLAAGSNNQTVLPFDG--LNYPEGLAV---DTQGAVYVADRGNNRVVKLAAG--------------- 127 (260)
T ss_dssp CCEEEEETTTEEEEECTTCSCCEECCCCS--CCSEEEEEE---CTTCCEEEEEGGGTEEEEECTT---------------
T ss_pred CCEEEeeeeeceeeeeeeccceeeeeeee--eeecccccc---cccceeEeeccccccccccccc---------------
Confidence 88777766666666665444443322221 122344444 4566666665555666666544
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
................+++++|+++.+++...++.|..++...... .. ....
T Consensus 128 ------------------~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-------~~---~~~~ 179 (260)
T d1rwia_ 128 ------------------SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-------VV---LPFT 179 (260)
T ss_dssp ------------------CSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-------EE---CCCS
T ss_pred ------------------cceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee-------ee---eecc
Confidence 1110000111223457899999999888888888899998776422 11 1223
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.-.....+++. +.++++....+.|..++..+.....+..........|+++++|+++++-..+++|+..+.
T Consensus 180 ~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 180 DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 34456788886 567777777888998888665555543322224689999999998887677776665543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.13 E-value=0.00079 Score=73.15 Aligned_cols=280 Identities=9% Similarity=0.004 Sum_probs=147.1
Q ss_pred EEEEEe---CCeEEE--EECCCCee--EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCC
Q 001391 37 FLLAGS---GSQVLL--YDLEAGTL--IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELS 109 (1088)
Q Consensus 37 ~laag~---d~~I~v--wd~~tg~~--~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~ 109 (1088)
.|+.|+ ++.|.+ +|.+++++ +..........+..|+|+ +++ ..|.+...+.+..|.+....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s-------~d~----~~ly~~~~~~~~~~~i~~~~- 71 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD-------HER----KNIYGAAMKKWSSFAVKSPT- 71 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC-------TTS----SEEEEEEBTEEEEEEEEETT-
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEc-------CCC----CEEEEEeCCcEEEEEEeCCC-
Confidence 355664 356654 45566654 333344344456789999 777 45545556678888877432
Q ss_pred CCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE---cCCcEEEEEcCCC-------------ce---E
Q 001391 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNS-------------SI---I 170 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs---~Dg~V~iWd~~~~-------------~~---~ 170 (1088)
........ ........+++++ +++.+.... ..++|..+.+... .. .
T Consensus 72 -----------~~~~~~~~-~~~~~p~~v~~~~---~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
T d1jofa_ 72 -----------EIVHEASH-PIGGHPRANDADT---NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV 136 (365)
T ss_dssp -----------EEEEEEEE-ECCSSGGGGCTTS---CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred -----------CeEEEeee-cCCCCcEEEEECC---CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcc
Confidence 00101000 0112234455555 665332221 1344444333211 11 1
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
............++.+ +|++.++++.+. ...|.+|+..... .....
T Consensus 137 ~~~~~q~~~h~h~v~~---sPdG~~l~v~d~g~d~v~~~~~~~~g------------------------------~~~~~ 183 (365)
T d1jofa_ 137 QNYEYQENTGIHGMVF---DPTETYLYSADLTANKLWTHRKLASG------------------------------EVELV 183 (365)
T ss_dssp EEEECCTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTS------------------------------CEEEE
T ss_pred cCcccCCCCcceEEEE---CCCCCEEEEeeCCCCEEEEEEccCCC------------------------------ceeec
Confidence 1111222333556665 789998777653 4578888765110 11111
Q ss_pred EEE--eCCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcccCCCCceeeece------------eeeccCcceEEE
Q 001391 250 FRL--VGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSS------------VLYGHNARVWDC 314 (1088)
Q Consensus 250 ~~~--~gh~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~------------~~~~h~~~I~~v 314 (1088)
... .........++|+|+++++.. .-.+++|.+|++....... ....... ....+......+
T Consensus 184 ~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 260 (365)
T d1jofa_ 184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP---VYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred cceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE---EEEeeeeccccccccccccccccccCCccce
Confidence 122 223467899999999998755 4467899999997754310 0111100 011222345567
Q ss_pred EEC--CCEEEEEeC-C-----CcEEEEcC--CCceeEEE---c-ccCCCCeEEEEEcC-CCCEEEEE-eCCCCEEEEEcC
Q 001391 315 CLT--DSFIITAGE-D-----CTCRVWGS--DGKQLKMI---K-EHIGRGIWRCLYDS-LSSLLVTA-GFDSAIKVHQFQ 378 (1088)
Q Consensus 315 ~~~--~~~l~sg~~-D-----g~i~vWd~--~~~~~~~~---~-~h~~~~V~~l~~~~-dg~~l~tg-~~Dg~I~iwd~~ 378 (1088)
.++ +.+|+++.. + ..|..|+. .+...... . ...+...+.++++| +|++|+.+ ..++.|.+|+++
T Consensus 261 ~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 777 567666542 2 23777776 33322211 1 11222456799998 78877666 467899999885
Q ss_pred C
Q 001391 379 A 379 (1088)
Q Consensus 379 ~ 379 (1088)
.
T Consensus 341 ~ 341 (365)
T d1jofa_ 341 D 341 (365)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=0.0019 Score=66.24 Aligned_cols=236 Identities=12% Similarity=0.030 Sum_probs=131.3
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCcccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNL 122 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~ 122 (1088)
.|.|-|...+.. ..+..... .+..-+|| ||| ..||.. . .+...+|......
T Consensus 20 ~l~i~d~dG~~~-~~l~~~~~-~~~sP~wS-------PDG----k~IAf~~~~~~~~~~~~~~~~~-------------- 72 (269)
T d2hqsa1 20 ELRVSDYDGYNQ-FVVHRSPQ-PLMSPAWS-------PDG----SKLAYVTFESGRSALVIQTLAN-------------- 72 (269)
T ss_dssp EEEEEETTSCSC-EEEEEESS-CEEEEEEC-------TTS----SEEEEEECTTSSCEEEEEETTT--------------
T ss_pred EEEEEcCCCCCc-EEEecCCC-ceeeeEEC-------CCC----CEEEEEEeeccCcceeeeeccc--------------
Confidence 688888764443 34433333 58889999 899 455543 3 3333334333221
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEc--CCCceEEEeccCCceeEEEEeeecCCCCC-cEEEE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDI--SNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIAS 198 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~--~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~s 198 (1088)
.....+..+...+....|+| +++.++.... ++...++.. ............... ....+ +.++ ..+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~sp---dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~ 144 (269)
T d2hqsa1 73 GAVRQVASFPRHNGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNN--TEPTW---FPDSQNLAFT 144 (269)
T ss_dssp CCEEEEECCSSCEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCE--EEEEE---CTTSSEEEEE
T ss_pred CceeEEeeeecccccceecC---CCCeeeEeeecCCccceeecccccccceeeeeccccc--ccccc---ccccccceec
Confidence 22334446778889999999 9998776553 333333332 222222222222111 11111 2233 34455
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD- 277 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D- 277 (1088)
...+|...+|.... ..........+........|+|+++.++..+.+
T Consensus 145 ~~~~g~~~i~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 192 (269)
T d2hqsa1 145 SDQAGRPQVYKVNI--------------------------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 192 (269)
T ss_dssp ECTTSSCEEEEEET--------------------------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred ccccCCceEeeeec--------------------------------ccccceeeecccccccccccccccceeEEEeecC
Confidence 55566555554430 122233344566777888999999988776554
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC---CCcEEEEcCCCceeEEEcccCCCCeE
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE---DCTCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~---Dg~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
+...+|....... .. ....+........|+ ++.|+-.+. ...|.+++++|.....+....+ .+.
T Consensus 193 ~~~~i~~~~~~~~-------~~---~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g-~~~ 261 (269)
T d2hqsa1 193 GQQHIAKQDLATG-------GV---QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG-QVK 261 (269)
T ss_dssp SCEEEEEEETTTC-------CE---EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSS-EEE
T ss_pred CceeeeEeecccc-------cc---eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCC-cEE
Confidence 4455554443211 11 233344556777898 566654332 3468889998887777777666 588
Q ss_pred EEEEcC
Q 001391 353 RCLYDS 358 (1088)
Q Consensus 353 ~l~~~~ 358 (1088)
..+|+|
T Consensus 262 ~p~WSP 267 (269)
T d2hqsa1 262 FPAWSP 267 (269)
T ss_dssp EEEECC
T ss_pred eEEeCC
Confidence 889988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.00 E-value=0.0005 Score=70.75 Aligned_cols=231 Identities=6% Similarity=-0.049 Sum_probs=132.6
Q ss_pred cEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 134 WVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
.-.++++.+ +|...++. +..+.+..++........... ........+++ ++++.++++....+.+++++-.
T Consensus 15 ~P~~vavd~---dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~gvav---~~~g~i~v~d~~~~~i~~~~~~- 86 (260)
T d1rwia_ 15 SPSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTTVLPF-NGLYQPQGLAV---DGAGTVYVTDFNNRVVTLAAGS- 86 (260)
T ss_dssp CEEEEEECT---TCCEEEEECSSSCEEEEEC----CEEECCC-CSCCSCCCEEE---CTTCCEEEEETTTEEEEECTTC-
T ss_pred CCCEEEEcC---CCCEEEEEcCCCCEEEEEcCCCceEEEecc-CCccCceEEEE---cCCCCEEEeeeeeceeeeeeec-
Confidence 348999998 88865554 455667776654433222211 11111122333 4567766666555555544332
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
....+.. ........++++.+++..+++-.....+..++......
T Consensus 87 --------------------------------~~~~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-- 131 (260)
T d1rwia_ 87 --------------------------------NNQTVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-- 131 (260)
T ss_dssp --------------------------------SCCEECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--
T ss_pred --------------------------------cceeeee-eeeeeecccccccccceeEeecccccccccccccccee--
Confidence 1211111 12235678999999999887766666677776655321
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
... .. .-......+++. +.++++...++.|..++.++.....+..-.......+++.++|+++++....+
T Consensus 132 ----~~~---~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~ 203 (260)
T d1rwia_ 132 ----TVL---PF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN 203 (260)
T ss_dssp ----EEC---CC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTT
T ss_pred ----eee---ee-cccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCC
Confidence 111 11 112234567776 57777778888999999976655555422222578999999999888887788
Q ss_pred CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe-cCCeEEE
Q 001391 371 AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYH 444 (1088)
Q Consensus 371 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t-~~g~i~~ 444 (1088)
.|..++..+.....+. ...-.....+++.++|.++++. .++.|.+
T Consensus 204 ~i~~~~~~~~~~~~~~-----------------------------~~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 204 QVVKLLAGSTTSTVLP-----------------------------FTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp EEEEECTTCSCCEECC-----------------------------CCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred EEEEEeCCCCeEEEEc-----------------------------cCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 8887776432111100 0011246789999988887774 3444553
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.87 E-value=0.0026 Score=67.15 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=77.2
Q ss_pred CCCEEEEEEcCCCC-----EEEEEECCCcEEEEEcCCCcccCCCCceeeec-eeeec-cCcceEEEEEC--CCEEEEEeC
Q 001391 256 EGSIFRIEWSSCGS-----KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYG-HNARVWDCCLT--DSFIITAGE 326 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~-----~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~-~~~~~-h~~~I~~v~~~--~~~l~sg~~ 326 (1088)
-...+.++|+|++. ++++-+..+.|..|++..... ...... ..+.+ +......+++. +++.++...
T Consensus 171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~-----~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~ 245 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-----IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE-----EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccc-----cceeeEEEEccccccccceeeEEecCCcEEEEEcC
Confidence 34457899998764 455567788898888765321 111000 01111 22345678886 677777778
Q ss_pred CCcEEEEcCC-CceeEEEcccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcC
Q 001391 327 DCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 327 Dg~i~vWd~~-~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~ 378 (1088)
.+.|.+|+.+ ++.+..+..... ...+++|.|+++ +.+|.+.+|.|...++.
T Consensus 246 ~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 246 SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 8999999985 555666665544 588999999987 55666777888877763
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.86 E-value=0.0029 Score=67.06 Aligned_cols=231 Identities=10% Similarity=0.033 Sum_probs=130.4
Q ss_pred ceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
.+.+++|. ++| .+..+ ..++.|.-|+.+.. +..............+++.+
T Consensus 41 ~lEG~~~D-------~~G----~Ly~~D~~~g~I~ri~p~g~---------------~~~~~~~~~~~~p~gla~~~--- 91 (319)
T d2dg1a1 41 QLEGLNFD-------RQG----QLFLLDVFEGNIFKINPETK---------------EIKRPFVSHKANPAAIKIHK--- 91 (319)
T ss_dssp CEEEEEEC-------TTS----CEEEEETTTCEEEEECTTTC---------------CEEEEEECSSSSEEEEEECT---
T ss_pred CcEeCEEC-------CCC----CEEEEECCCCEEEEEECCCC---------------eEEEEEeCCCCCeeEEEECC---
Confidence 45788998 777 44444 34677766665432 12222333445688999999
Q ss_pred CCCEEEEEEcC----CcEEEEEcCCCceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEec------CCeEEEEEeccCc
Q 001391 146 GNRSLAIGCSD----NSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVDWEH 214 (1088)
Q Consensus 146 d~~~lasgs~D----g~V~iWd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~------dg~I~vwd~~~~~ 214 (1088)
+|+++++...+ +.+...+.............. ......+.+ .++|.+.++... .+.+..++.
T Consensus 92 dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~---d~~G~l~vtd~~~~~~~~~g~v~~~~~---- 164 (319)
T d2dg1a1 92 DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF---DSKGGFYFTDFRGYSTNPLGGVYYVSP---- 164 (319)
T ss_dssp TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE---CTTSCEEEEECCCBTTBCCEEEEEECT----
T ss_pred CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeE---EeccceeecccccccccCcceeEEEec----
Confidence 99877765432 234444444444433332211 111222332 455654444211 111222221
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCcccCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
.+..+..+...-...+.++|+|+++.| ++-+..+.|..|++......
T Consensus 165 ------------------------------dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~-- 212 (319)
T d2dg1a1 165 ------------------------------DFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-- 212 (319)
T ss_dssp ------------------------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS--
T ss_pred ------------------------------ccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCce--
Confidence 122233333333456889999999865 55667889999998653210
Q ss_pred CCceeeec--eeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEccc------CCCCeEEEEEcCCCCEE
Q 001391 294 DSIEEVGS--SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEH------IGRGIWRCLYDSLSSLL 363 (1088)
Q Consensus 294 ~~~~~i~~--~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h------~~~~V~~l~~~~dg~~l 363 (1088)
...... ............+++. +++.++....+.|.+++.+|+.+..+... .. .+++++|.+++..+
T Consensus 213 --~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~-~~~~~~~~~~~~~~ 289 (319)
T d2dg1a1 213 --IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHML-RSTHPQFIPGTNQL 289 (319)
T ss_dssp --EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSC-BCCEEEECTTSCEE
T ss_pred --eccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCc-eeeeEEEeCCCCEE
Confidence 111110 0111222335678886 67888888899999999999988877532 22 37799999888776
Q ss_pred EEEeC
Q 001391 364 VTAGF 368 (1088)
Q Consensus 364 ~tg~~ 368 (1088)
++...
T Consensus 290 ~~t~~ 294 (319)
T d2dg1a1 290 IICSN 294 (319)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 66554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=0.0048 Score=62.96 Aligned_cols=229 Identities=7% Similarity=-0.027 Sum_probs=126.0
Q ss_pred ceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEeC----CeEEEEECCCCeeEEEEeeeCCcceEEEEecc
Q 001391 6 LSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSG----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (1088)
Q Consensus 6 i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~d----~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~ 75 (1088)
|.|-|..... ....+..-+|| || |+.||-..+ ..+.+.+..++... .+..+.+ ......|+
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wS--PD----Gk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~s- 91 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWS--PD----GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR-HNGAPAFS- 91 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEEC--TT----SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS-CEEEEEEC-
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEEC--CC----CCEEEEEEeeccCcceeeeecccCcee-EEeeeec-ccccceec-
Confidence 5555554333 33456788999 99 889987552 46777787766553 3333333 67888999
Q ss_pred cccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCE-EEEE
Q 001391 76 INCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIG 153 (1088)
Q Consensus 76 ~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~-lasg 153 (1088)
|+|+ .++.... .+...++...... .................+++ ++.. +++.
T Consensus 92 ------pdg~---~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 145 (269)
T d2hqsa1 92 ------PDGS---KLAFALSKTGSLNLYVMDLAS--------------GQIRQVTDGRSNNTEPTWFP---DSQNLAFTS 145 (269)
T ss_dssp ------TTSS---EEEEEECTTSSCEEEEEETTT--------------CCEEECCCCSSCEEEEEECT---TSSEEEEEE
T ss_pred ------CCCC---eeeEeeecCCccceeeccccc--------------ccceeeeecccccccccccc---ccccceecc
Confidence 7873 4444443 3444444433221 11122223334445555666 5554 4444
Q ss_pred EcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 154 CSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 154 s~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
..++. |.+.++..+...... ... .......+ ++++..++..+. .+...+|...
T Consensus 146 ~~~g~~~i~~~~~~~~~~~~~~-~~~-~~~~~~~~---spdg~~~~~~~~~~~~~~i~~~~------------------- 201 (269)
T d2hqsa1 146 DQAGRPQVYKVNINGGAPQRIT-WEG-SQNQDADV---SSDGKFMVMVSSNGGQQHIAKQD------------------- 201 (269)
T ss_dssp CTTSSCEEEEEETTSSCCEECC-CSS-SEEEEEEE---CTTSSEEEEEEECSSCEEEEEEE-------------------
T ss_pred cccCCceEeeeecccccceeee-ccc-cccccccc---ccccceeEEEeecCCceeeeEee-------------------
Confidence 44554 445555554333222 222 22223333 577777766544 4555555554
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCcccCCCCceeeeceeeecc
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h 307 (1088)
..........+........|+|||+.|+-.+. ...+.++++..+.. ..+...
T Consensus 202 --------------~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-----------~~lt~~ 256 (269)
T d2hqsa1 202 --------------LATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-----------ARLPAT 256 (269)
T ss_dssp --------------TTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-----------EECCCS
T ss_pred --------------cccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-----------EEEeCC
Confidence 11112233445666778899999999875543 34678888877532 134444
Q ss_pred CcceEEEEECC
Q 001391 308 NARVWDCCLTD 318 (1088)
Q Consensus 308 ~~~I~~v~~~~ 318 (1088)
...+...+|+|
T Consensus 257 ~g~~~~p~WSP 267 (269)
T d2hqsa1 257 DGQVKFPAWSP 267 (269)
T ss_dssp SSEEEEEEECC
T ss_pred CCcEEeEEeCC
Confidence 55677777775
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.74 E-value=0.0024 Score=67.43 Aligned_cols=214 Identities=9% Similarity=0.027 Sum_probs=124.2
Q ss_pred CCceEEecCCCcee-----------eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCc---ce
Q 001391 4 KDLSEWRLDVGQYL-----------GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGI---RL 68 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~-----------~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~---~V 68 (1088)
+.|..||..++... +.-..++|. ++ +.+|.++. ...|..+|..++.........++. ..
T Consensus 46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~--~d----g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~p 119 (314)
T d1pjxa_ 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD--RD----ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGC 119 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEEC--SS----SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCC
T ss_pred CEEEEEECCCCcEEEEECCccccCCCcceeEEEe--CC----CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCC
Confidence 45777787777621 124579999 88 76666555 467888997765432211222221 24
Q ss_pred EEEEecccccccCCCccceeeEEEEECC--------------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFGE--------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~gd--------------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
..+++. ++| .+.++-.. ..-+||.+.... +... +...-..
T Consensus 120 ndl~~d-------~~G----~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg--------------~~~~-~~~~~~~ 173 (314)
T d1pjxa_ 120 NDCAFD-------YEG----NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG--------------QMIQ-VDTAFQF 173 (314)
T ss_dssp CEEEEC-------TTS----CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS--------------CEEE-EEEEESS
T ss_pred cEEEEC-------CCC----CEEEecCccCcccccccceeccCCceEEEEeecC--------------ceeE-eeCCcce
Confidence 567777 676 33333211 122445444221 1111 1111223
Q ss_pred EEEEEEecccCCCC----EEE-EEEcCCcEEEEEcCCCceEE------EeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 135 VFDVCFLKVCNGNR----SLA-IGCSDNSIRVWDISNSSIIL------EVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 135 I~~v~f~p~~~d~~----~la-sgs~Dg~V~iWd~~~~~~~~------~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
-+.++|+| +++ .|+ +-+..+.|..|++.....+. .+........-.+++ +.+|.+.++....+
T Consensus 174 pNGi~~~~---d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav---D~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 174 PNGIAVRH---MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF---DEDNNLLVANWGSS 247 (314)
T ss_dssp EEEEEEEE---CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE---BTTCCEEEEEETTT
T ss_pred eeeeEECC---CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE---ecCCcEEEEEcCCC
Confidence 46789998 553 444 44667889888876443322 111111112234444 46787777777788
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARI 282 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~i 282 (1088)
.|.+||.+ .+..+..+......+.+++|.|+++. +++.+..+.|..
T Consensus 248 ~I~~~dp~---------------------------------~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 248 HIEVFGPD---------------------------------GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EEEEECTT---------------------------------CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEEeCC---------------------------------CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence 89999877 45555556666678899999999974 567777888877
Q ss_pred EEcCCC
Q 001391 283 WEVRAE 288 (1088)
Q Consensus 283 Wd~~~~ 288 (1088)
.++...
T Consensus 295 ~~~~~~ 300 (314)
T d1pjxa_ 295 FEWQRN 300 (314)
T ss_dssp EECSSC
T ss_pred EECCCC
Confidence 776553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.51 E-value=0.036 Score=58.09 Aligned_cols=230 Identities=11% Similarity=0.046 Sum_probs=128.2
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CC-
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE- 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd- 96 (1088)
+.+++|. ++ +++.++-. ++.|+.||..+++....+..... ..++++++ +|| .++++. ++
T Consensus 42 lEG~~~D--~~----G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~-~p~gla~~-------~dG----~l~va~~~~~ 103 (319)
T d2dg1a1 42 LEGLNFD--RQ----GQLFLLDVFEGNIFKINPETKEIKRPFVSHKA-NPAAIKIH-------KDG----RLFVCYLGDF 103 (319)
T ss_dssp EEEEEEC--TT----SCEEEEETTTCEEEEECTTTCCEEEEEECSSS-SEEEEEEC-------TTS----CEEEEECTTS
T ss_pred cEeCEEC--CC----CCEEEEECCCCEEEEEECCCCeEEEEEeCCCC-CeeEEEEC-------CCC----CEEEEecCCC
Confidence 3588998 88 77777655 68999999887765555543333 68999999 887 455543 32
Q ss_pred -CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc------CCcEEEEEcCCCce
Q 001391 97 -KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS------DNSIRVWDISNSSI 169 (1088)
Q Consensus 97 -~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~------Dg~V~iWd~~~~~~ 169 (1088)
....++.+..... .......-..-......+++.| +|.+.++-.. .+.+..++...+..
T Consensus 104 ~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~nd~~~d~---~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~ 169 (319)
T d2dg1a1 104 KSTGGIFAATENGD-----------NLQDIIEDLSTAYCIDDMVFDS---KGGFYFTDFRGYSTNPLGGVYYVSPDFRTV 169 (319)
T ss_dssp SSCCEEEEECTTSC-----------SCEEEECSSSSCCCEEEEEECT---TSCEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred ccceeEEEEcCCCc-----------eeeeeccCCCcccCCcceeEEe---ccceeecccccccccCcceeEEEeccccee
Confidence 3455665553220 0111111111124578899999 9986665422 12244444433322
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
..+.... .....+++ ++++..| ++-+..+.|..|++....... . .....
T Consensus 170 -~~~~~~~-~~pnGia~---s~dg~~lyvad~~~~~I~~~d~~~~g~~~--------------------~-----~~~~~ 219 (319)
T d2dg1a1 170 -TPIIQNI-SVANGIAL---STDEKVLWVTETTANRLHRIALEDDGVTI--------------------Q-----PFGAT 219 (319)
T ss_dssp -EEEEEEE-SSEEEEEE---CTTSSEEEEEEGGGTEEEEEEECTTSSSE--------------------E-----EEEEE
T ss_pred -EEEeecc-ceeeeeee---ccccceEEEecccCCceEEEEEcCCCcee--------------------c-----cccce
Confidence 2221110 11123444 5777655 555678899999986211000 0 00111
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee-ceeeeccCcceEEEEEC
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHNARVWDCCLT 317 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~-~~~~~~h~~~I~~v~~~ 317 (1088)
...........-.+++.++|...++....+.|.++|... +. ...+. +....++...+++++|.
T Consensus 220 ~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G-~~-----l~~i~~P~~~~~~~~~~~~~~~~ 283 (319)
T d2dg1a1 220 IPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YP-----IGQILIPGRDEGHMLRSTHPQFI 283 (319)
T ss_dssp EEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CE-----EEEEECTTGGGTCSCBCCEEEEC
T ss_pred eeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC-cE-----EEEEeCCCcCCCcCceeeeEEEe
Confidence 111122233467899999999999999999999999643 22 12221 00112445567899997
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0066 Score=67.78 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=61.2
Q ss_pred CCCCceEEecCCCce----------eeeeEEEEEeccCCCCCCCCEEEEEeC----------CeEEEEECCCCeeEEEEe
Q 001391 2 GKKDLSEWRLDVGQY----------LGEISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPFQ 61 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~----------~~~V~~v~fs~~pd~~~~~~~laag~d----------~~I~vwd~~tg~~~~~~~ 61 (1088)
.||.|.+||+.+++. ...+....|| || +++|+...+ +.+.|||+.+++......
T Consensus 35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S--pD----~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~ 108 (465)
T d1xfda1 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS--PD----REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP 108 (465)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC--TT----SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC
T ss_pred CCCcEEEEECCCCCEEEEEcCccccccccceeEEC--CC----CCeEEEEEcccceeEeeccccEEEEEccCCceeeccC
Confidence 467899999988872 1246677899 99 888887654 578999999886532211
Q ss_pred e-eCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc
Q 001391 62 V-FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (1088)
Q Consensus 62 ~-~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~ 106 (1088)
. .....+.-..|| ||| ..+|...++.|.+.+...
T Consensus 109 ~~~~~~~l~~~~wS-------PDG----~~iafv~~~nl~~~~~~~ 143 (465)
T d1xfda1 109 PEVSNAKLQYAGWG-------PKG----QQLIFIFENNIYYCAHVG 143 (465)
T ss_dssp TTCCSCCCSBCCBC-------SST----TCEEEEETTEEEEESSSS
T ss_pred ccCCccccceeeec-------cCC----ceEEEEecceEEEEecCC
Confidence 1 122246678888 888 566666678887777653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.0057 Score=68.36 Aligned_cols=234 Identities=10% Similarity=0.055 Sum_probs=128.1
Q ss_pred EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEee--eCCcceEEEEecccccccCCCccceeeEEEEEC-----
Q 001391 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV--FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----- 95 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~--~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g----- 95 (1088)
..|. ++ +.++....+|.|.+||+.+++....+.. .....+....|| ||++ .++....
T Consensus 22 ~~W~--~~----~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S-------pD~~---~vl~~~~~~~~~ 85 (465)
T d1xfda1 22 AKWI--SD----TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-------PDRE---YALFSYNVEPIY 85 (465)
T ss_dssp CCBS--SS----SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-------TTSS---EEEEEESCCCCS
T ss_pred CEEe--CC----CcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEEC-------CCCC---eEEEEEccccee
Confidence 3566 66 6777766678999999998865333332 223356777888 8883 4444432
Q ss_pred ----CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 96 ----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 96 ----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
.+.+.++|+.... .+.+.........+....|+| ||+.||-.. ++.|.+.+..++..+.
T Consensus 86 r~s~~~~~~i~d~~~~~-------------~~~l~~~~~~~~~l~~~~wSP---DG~~iafv~-~~nl~~~~~~~~~~~~ 148 (465)
T d1xfda1 86 QHSYTGYYVLSKIPHGD-------------PQSLDPPEVSNAKLQYAGWGP---KGQQLIFIF-ENNIYYCAHVGKQAIR 148 (465)
T ss_dssp SSCCCSEEEEEESSSCC-------------CEECCCTTCCSCCCSBCCBCS---STTCEEEEE-TTEEEEESSSSSCCEE
T ss_pred EeeccccEEEEEccCCc-------------eeeccCccCCccccceeeecc---CCceEEEEe-cceEEEEecCCCceEE
Confidence 3578888988654 333333334445667788999 999887764 7788888887776655
Q ss_pred EeccCCceeEEE---------------EeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCC-CCCCccCCCCCCCC
Q 001391 172 EVHSPERCLLYS---------------MKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSSDF 234 (1088)
Q Consensus 172 ~~~~~~~~~~~s---------------~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~-~~~~~s~~~~~~~~ 234 (1088)
.........++. .++ ..+|||..||.... +..+..+.+.......... ........|.....
T Consensus 149 lt~~g~~~~i~nG~~d~vyeee~~~~~~a~-~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~ 227 (465)
T d1xfda1 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAH-WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS 227 (465)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEE-EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred EecccCcceeeccccchhhhhhhccccceE-EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCc
Confidence 444322222211 011 13789999888653 4556666554211000000 00011111222122
Q ss_pred ceeEecccccceeeeEEE-----eCCCCCEEEEEEcCCCCEEEEEE-CC---CcEEEEEcCCCcc
Q 001391 235 KCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVS-DD---RSARIWEVRAEYW 290 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~-----~gh~~~V~~v~~sp~g~~l~s~s-~D---g~v~iWd~~~~~~ 290 (1088)
..+.+++........... .....-+..+.|+|+++.++... .+ ..+.++|..+++.
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~ 292 (465)
T d1xfda1 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (465)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred eeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE
Confidence 233344332111111111 11223477899999988665532 23 2577788887644
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.46 E-value=0.066 Score=55.24 Aligned_cols=191 Identities=9% Similarity=-0.057 Sum_probs=112.9
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC---ceeEEEEeeecCCCCCcEEEEEecC----CeE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE---RCLLYSMKLWGDNLEALRIASGTIY----NEI 205 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~---~~~~~s~~~~~~s~~~~~l~sg~~d----g~I 205 (1088)
..+.++++.+ ++.++++ +.+ -+.++|..+++......... ......+.+ .++|.+.++...+ +.-
T Consensus 59 ~~~~~i~~~~---dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~v---d~~G~iw~~~~~~~~~~~~g 130 (295)
T d2ghsa1 59 FMGSALAKIS---DSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRM---HPSGALWIGTMGRKAETGAG 130 (295)
T ss_dssp SCEEEEEEEE---TTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE---CTTSCEEEEEEETTCCTTCE
T ss_pred CCcEEEEEec---CCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEE---CCCCCEEEEeccccccccce
Confidence 4678899988 8876654 444 58899999887644332111 122333333 4566554443211 222
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEE
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWE 284 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd 284 (1088)
.+|.+. .++..... ..-.....++|+++++.+ ++-+..+.|..++
T Consensus 131 ~l~~~~---------------------------------~g~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 131 SIYHVA---------------------------------KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp EEEEEE---------------------------------TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred eEeeec---------------------------------CCcEEEEe-eccCCcceeeecCCCceEEEeecccceeeEee
Confidence 333333 22222222 223456789999999865 5566778898888
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEc-CCCC
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSS 361 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~-~dg~ 361 (1088)
+.............+ ....+.......+++. +++.++.-..+.|..||.+|+.+..+..... .+++++|- +|.+
T Consensus 177 ~d~~~~~~~~~~~~~--~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~-~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 177 LDARTGLPTGKAEVF--IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGK-QTTCPAFIGPDAS 253 (295)
T ss_dssp BCTTTCCBSSCCEEE--EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCS-BEEEEEEESTTSC
T ss_pred ecccccccccceEEE--eccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCC-ceEEEEEeCCCCC
Confidence 764321000001111 1223344567788886 5666666677889999999999998877655 59999995 6665
Q ss_pred EE-EEEeC
Q 001391 362 LL-VTAGF 368 (1088)
Q Consensus 362 ~l-~tg~~ 368 (1088)
.| +|...
T Consensus 254 ~LyvTta~ 261 (295)
T d2ghsa1 254 RLLVTSAR 261 (295)
T ss_dssp EEEEEEBC
T ss_pred EEEEEECC
Confidence 44 44443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.17 E-value=0.18 Score=51.82 Aligned_cols=227 Identities=10% Similarity=0.003 Sum_probs=133.8
Q ss_pred EEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~i 101 (1088)
..|. +. .+.+..+-. ++.|.-||.++++. ..+.. .. .+.++++. ++| .++++.. ..+.+
T Consensus 23 p~wd--~~---~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~-~~-~~~~i~~~-------~dg----~l~va~~-~gl~~ 82 (295)
T d2ghsa1 23 PTFD--PA---SGTAWWFNILERELHELHLASGRK-TVHAL-PF-MGSALAKI-------SDS----KQLIASD-DGLFL 82 (295)
T ss_dssp EEEE--TT---TTEEEEEEGGGTEEEEEETTTTEE-EEEEC-SS-CEEEEEEE-------ETT----EEEEEET-TEEEE
T ss_pred CeEE--CC---CCEEEEEECCCCEEEEEECCCCeE-EEEEC-CC-CcEEEEEe-------cCC----CEEEEEe-CccEE
Confidence 4466 54 134444433 58999999998865 33443 22 57888887 666 5666554 56888
Q ss_pred EEeccCCCCCCCCCCccccccceeeeccCC--CCcEEEEEEecccCCCCEEEEEEc----CCcEEEEEcCCCceEEEecc
Q 001391 102 FELNFELSPNSQYQPETCVNLSLVQSLPRL--SHWVFDVCFLKVCNGNRSLAIGCS----DNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 102 w~l~~~~~~~~~~~~~~~~~~~~~~~l~~h--~~~I~~v~f~p~~~d~~~lasgs~----Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
+|..... .+.+...... ...++++.+.| +|.+.++... .+.-.+|.+..++.......
T Consensus 83 ~d~~tg~-------------~~~l~~~~~~~~~~~~nd~~vd~---~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~ 146 (295)
T d2ghsa1 83 RDTATGV-------------LTLHAELESDLPGNRSNDGRMHP---SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD 146 (295)
T ss_dssp EETTTCC-------------EEEEECSSTTCTTEEEEEEEECT---TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE
T ss_pred eecccce-------------eeEEeeeecCCCcccceeeEECC---CCCEEEEeccccccccceeEeeecCCcEEEEeec
Confidence 8877543 3333332222 24689999999 9986655432 23456777766654433321
Q ss_pred CCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 176 PERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.. ....+.+ ++++. ++++.+..+.|..+++........ ........+.+
T Consensus 147 ~~--~~Ng~~~---s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~-------------------------~~~~~~~~~~~ 196 (295)
T d2ghsa1 147 IS--IPNSICF---SPDGTTGYFVDTKVNRLMRVPLDARTGLPT-------------------------GKAEVFIDSTG 196 (295)
T ss_dssp ES--SEEEEEE---CTTSCEEEEEETTTCEEEEEEBCTTTCCBS-------------------------SCCEEEEECTT
T ss_pred cC--Ccceeee---cCCCceEEEeecccceeeEeeecccccccc-------------------------cceEEEeccCc
Confidence 11 1122333 45665 455666778899888761110000 01122233345
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC----CEEEEEeC
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGE 326 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~----~~l~sg~~ 326 (1088)
-.+...++++..+|.+.++.-..+.|..||... +.+. ...-....+++++|-+ .+++|...
T Consensus 197 ~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G---------~~~~--~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 197 IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG---------NHIA--RYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp SSSEEEEEEECTTSCEEEEEETTTEEEEECTTC---------CEEE--EEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ccccccceEEcCCCCEEeeeeCCCceEEecCCC---------cEee--EecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 566788999999999888888888999999654 2232 2222335689999962 35565443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.47 E-value=0.063 Score=54.28 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=40.4
Q ss_pred EEEEECCCEEEEEe-CCC--cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 312 WDCCLTDSFIITAG-EDC--TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 312 ~~v~~~~~~l~sg~-~Dg--~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
....+.+..++... .++ .|.++|++++..+.+..+.. .....|+|||+.|+- ..++.|.++|+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~--~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g 263 (281)
T d1k32a2 195 SSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILF-SKGGSIYIFNPDTE 263 (281)
T ss_dssp EEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEE-EETTEEEEECTTTC
T ss_pred ceeeeeccccceecccccccceEEEeCCCCceEEeecCCC--cccccCcCCCCEEEE-EeCCEEEEEECCCC
Confidence 34444444444433 333 46677777777777655543 233458999998775 44678888888654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.94 E-value=0.54 Score=49.74 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=66.1
Q ss_pred EEEEEEcCCCCEEEEEECCC-----------cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe
Q 001391 259 IFRIEWSSCGSKLVSVSDDR-----------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG 325 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg-----------~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~ 325 (1088)
+.......+|+.++.|+.+. .+.+||..+++. ..... ....|.......++. +.+++.|+
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w------~~~~~-~~~~~~~~~~~~~~~~~g~i~v~Gg 94 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV------SDRTV-TVTKHDMFCPGISMDGNGQIVVTGG 94 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB------CCCEE-EECSCCCSSCEEEECTTSCEEEECS
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcE------eecCC-CCCCcccceeEEEEecCCcEEEeec
Confidence 34444556788888877431 367899998754 11110 222232222334444 56777776
Q ss_pred CC-CcEEEEcCCCceeEEEcc-cCCCCeEEEEEcCCCCEEEEEeCC------CCEEEEEcCC
Q 001391 326 ED-CTCRVWGSDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFD------SAIKVHQFQA 379 (1088)
Q Consensus 326 ~D-g~i~vWd~~~~~~~~~~~-h~~~~V~~l~~~~dg~~l~tg~~D------g~I~iwd~~~ 379 (1088)
.+ .++.+||.....-..... ...+.-.+.+..+||++++.|+.+ ..+.+||+..
T Consensus 95 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 95 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 55 589999984333333221 111223466778899999988854 3678888854
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.18 E-value=0.66 Score=48.95 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=66.7
Q ss_pred CCEEEEEe-C-----C------eEEEEECCCCeeEE--EEeeeCCcceEEEEecccccccCCCccceeeEEEEEC--CCE
Q 001391 35 LPFLLAGS-G-----S------QVLLYDLEAGTLIR--PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EKR 98 (1088)
Q Consensus 35 ~~~laag~-d-----~------~I~vwd~~tg~~~~--~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g--d~~ 98 (1088)
+++++.|. + + .+.+||..+++-.. .....+..-..+.++. +++ .+++.++ .+.
T Consensus 31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-------~~g----~i~v~Gg~~~~~ 99 (387)
T d1k3ia3 31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-------GNG----QIVVTGGNDAKK 99 (387)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-------TTS----CEEEECSSSTTC
T ss_pred CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEe-------cCC----cEEEeecCCCcc
Confidence 67777765 1 1 47899999886432 2222222224556666 777 5666655 468
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC------CcEEEEEcCCCceE
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSII 170 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D------g~V~iWd~~~~~~~ 170 (1088)
+.+||..... ......+... .+-..++..+ |+++++.|+.+ +.+.+||..+.+..
T Consensus 100 ~~~yd~~~~~-------------w~~~~~~~~~-r~~~~~~~~~---dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 100 TSLYDSSSDS-------------WIPGPDMQVA-RGYQSSATMS---DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEEEEGGGTE-------------EEECCCCSSC-CSSCEEEECT---TSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred eeEecCccCc-------------cccccccccc-ccccceeeec---CCceeeeccccccccccceeeeecCCCCcee
Confidence 9999988643 2222222221 2334677777 99998888753 36899999877543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.89 E-value=2.1 Score=42.50 Aligned_cols=257 Identities=11% Similarity=0.085 Sum_probs=145.9
Q ss_pred CceEEecCCCce--eeeeE--EEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccccc
Q 001391 5 DLSEWRLDVGQY--LGEIS--ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 5 ~i~iWdl~~g~~--~~~V~--~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
.|.|-|+..+.. ..++. +.-.+ |. .+.||.-.+.+|+|+|+++.+.++.+.-.+. |.--.|-
T Consensus 46 ~VvIidl~n~~~~~Rrpi~AdsAIMh--P~----~~IiALrag~~LQiFnletK~klks~~~~e~--VvfWkWi------ 111 (327)
T d1utca2 46 QVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTDD--VTFWKWI------ 111 (327)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEEC--SS----SSEEEEEETTEEEEEETTTTEEEEEEECSSC--CCEEEES------
T ss_pred eEEEEECCCCCcceecccchhhhhcC--CC----CcEEEEecCCeEEEEehhHhhhhceEEcCCC--cEEEEec------
Confidence 466667765541 22333 23345 76 6788887789999999999999998886553 6555665
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC----CCcEEEEEEecccCCCCEEEEEEcC
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGCSD 156 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h----~~~I~~v~f~p~~~d~~~lasgs~D 156 (1088)
.+ ..|+.-.+..|.-|+++.+. .+.+.+..| ...|..-..++ +.++++..|--
T Consensus 112 -s~-----~~L~lVT~taVYHW~~~g~s--------------~P~k~fdR~~~L~~~QIInY~~d~---~~kW~~l~GI~ 168 (327)
T d1utca2 112 -SL-----NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTGIS 168 (327)
T ss_dssp -SS-----SEEEEECSSEEEEEESSSSC--------------CCEEEEECCGGGTTCEEEEEEECT---TSCEEEEEEEE
T ss_pred -CC-----CEEEEEcCCceEEEcccCCC--------------CchhhhhhcccccCceEEEEEECC---CCCEEEEEeEe
Confidence 44 68888889999999996432 122222222 34677777777 77766554310
Q ss_pred CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCce
Q 001391 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1088)
Q Consensus 157 g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1088)
. .++ .+ .|.+.+|..+
T Consensus 169 --------------------------~-------~~~-~i-----~G~mQLYS~e------------------------- 184 (327)
T d1utca2 169 --------------------------A-------QQN-RV-----VGAMQLYSVD------------------------- 184 (327)
T ss_dssp --------------------------E-------ETT-EE-----EEEEEEEETT-------------------------
T ss_pred --------------------------c-------CCC-ce-----eEEEEEEEec-------------------------
Confidence 0 011 11 1445555544
Q ss_pred eEecccccceeeeEEEeCCCCCEEEEEEcCCC---CEEEE---EECCCcEEEEEcCCCccc-CCCCceeeeceeeecc--
Q 001391 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---SKLVS---VSDDRSARIWEVRAEYWK-DSDSIEEVGSSVLYGH-- 307 (1088)
Q Consensus 237 ~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g---~~l~s---~s~Dg~v~iWd~~~~~~~-~~~~~~~i~~~~~~~h-- 307 (1088)
.+.-+.+.||.+.-..+.+.-+. ..++- +...+.+.+-++...... .+...+.+. .....
T Consensus 185 ---------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vd--i~fppea 253 (327)
T d1utca2 185 ---------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD--VFFPPEA 253 (327)
T ss_dssp ---------TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEE--CCCCTTC
T ss_pred ---------cCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEE--EECCccc
Confidence 11222233333222222211100 01111 112257788887764221 111112121 11121
Q ss_pred -CcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 001391 308 -NARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1088)
Q Consensus 308 -~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~i 374 (1088)
..-..++..+ -+.++.-..-|.+.++|+ ++.++..-+-... +|...+-..+..-+++..++|.|..
T Consensus 254 ~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 254 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred cCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceEEEECCCCeEEE
Confidence 3345567777 468888999999999999 8888877665555 6887776666556777778887654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.64 E-value=2.2 Score=41.86 Aligned_cols=93 Identities=10% Similarity=-0.026 Sum_probs=54.6
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-----CCEEEEEEeccCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-----EKRVKLFELNFELS 109 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-----d~~v~iw~l~~~~~ 109 (1088)
|+.||-..++.|.+.|+.+++.. .+....+ .+...+|| ||| ..||... +....||-+....
T Consensus 12 G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~-~~~~p~~S-------PDG----~~iaf~~~~~~~~~~~~i~~~~~~~- 77 (281)
T d1k32a2 12 GDRIIFVCCDDLWEHDLKSGSTR-KIVSNLG-VINNARFF-------PDG----RKIAIRVMRGSSLNTADLYFYNGEN- 77 (281)
T ss_dssp TTEEEEEETTEEEEEETTTCCEE-EEECSSS-EEEEEEEC-------TTS----SEEEEEEEESTTCCEEEEEEEETTT-
T ss_pred CCEEEEEeCCcEEEEECCCCCEE-EEecCCC-cccCEEEC-------CCC----CEEEEEEeeCCCCCceEEEEEEecC-
Confidence 56677667788999999988764 4554444 58889999 898 4444321 2233455444322
Q ss_pred CCCCCCCccccccceeeec----cCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 110 PNSQYQPETCVNLSLVQSL----PRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l----~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
+ ..+.+... ...........|+| +++.|+...
T Consensus 78 -g---------~~~~lt~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~ 113 (281)
T d1k32a2 78 -G---------EIKRITYFSGKSTGRRMFTDVAGFDP---DGNLIISTD 113 (281)
T ss_dssp -T---------EEEECCCCCEEEETTEECSEEEEECT---TCCEEEEEC
T ss_pred -C---------ceEEeeecCCCccCccccccccccCC---CCCEEEEEE
Confidence 0 01111111 11223457788999 999887653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.58 E-value=5.5 Score=44.21 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=34.9
Q ss_pred CCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEE
Q 001391 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA 366 (1088)
Q Consensus 317 ~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg 366 (1088)
.+.+++.|+.||.++.+|. +|+.+.+++....-.-.-+.|..||+ ||++.
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEE
Confidence 3678889999999999999 89999888654431112255555775 55443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.51 E-value=5.3 Score=41.76 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=145.6
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCc--------------------------------------ceEEEEecccccccCCCc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGI--------------------------------------RLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~--------------------------------------~V~~i~~s~~~~~~~~d~ 84 (1088)
.|+|+||-+.+++++..+.+|... ..|.-++|.. .-.+||
T Consensus 22 sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~T--dGtyDG 99 (459)
T d1fwxa2 22 SGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT--EGKYDG 99 (459)
T ss_dssp TCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEE--TTEEEE
T ss_pred cceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCccccc--CCccce
Confidence 499999999999999888775421 1222233311 011255
Q ss_pred cceeeEEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-----
Q 001391 85 TRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN----- 157 (1088)
Q Consensus 85 ~~~~~~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg----- 157 (1088)
+++.+.. +.+|.+.|++.-. ...+-.+ .....+..++..+ .+.-.+++.++.+.
T Consensus 100 ----rylFVNDkan~RVAvIdl~~fk-------------t~kIi~i-Pn~~~~HG~r~~~-~p~T~YV~~~~e~~vP~pn 160 (459)
T d1fwxa2 100 ----RFLFMNDKANTRVARVRCDVMK-------------CDAILEI-PNAKGIHGLRPQK-WPRSNYVFCNGEDETPLVN 160 (459)
T ss_dssp ----EEEEEEETTTTEEEEEETTTTE-------------EEEEEEC-SSCCSEEEEEECC-SSBCSEEEEEECSCEESSC
T ss_pred ----eEEEEEcCCCceEEEEECccee-------------eeEEEec-CCCCCCceeeccc-CCCeEEEEccCccccccCC
Confidence 3444433 6888888887522 1112233 2334567777655 11345777766532
Q ss_pred -------------cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC---------------eEEEEE
Q 001391 158 -------------SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN---------------EIIVWK 209 (1088)
Q Consensus 158 -------------~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg---------------~I~vwd 209 (1088)
.+.++|..+.+...++..+... ..+.+ +++|.++++.+.+. .+.+++
T Consensus 161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~l--d~~~~---s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n 235 (459)
T d1fwxa2 161 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNL--DNCDA---DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFN 235 (459)
T ss_dssp SSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCC--CCEEE---CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEE
T ss_pred CCccccchhhcceEEEEEecCCceEEEEeeeCCCh--hcccc---CCCCCEEEEEeccccCCcchhhcccccceEEEEec
Confidence 3667888888877666533321 11222 57787777765321 244444
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEeccccc--ceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcC
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH--TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVR 286 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~ 286 (1088)
+...+ ....+|....-..+.+.+... ....++.+. -.....++.++|||++++.++ .+.++.+.|++
T Consensus 236 ~~rie---------~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 236 IAEIE---------KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp HHHHH---------HHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred hHHhH---------HhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence 43100 001111110000011111110 111222222 123356789999999987655 58999999997
Q ss_pred CCccc---CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC-------C----ceeEEEcccCCCC
Q 001391 287 AEYWK---DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-------G----KQLKMIKEHIGRG 350 (1088)
Q Consensus 287 ~~~~~---~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-------~----~~~~~~~~h~~~~ 350 (1088)
.-... ..+....+. ......-.....+|. +.-..|---|..|.-|++. + ..+..+.-|-.
T Consensus 306 Ki~~~~~~~~~~~~~~~--~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-- 381 (459)
T d1fwxa2 306 RFDAVFYENADPRSAVV--AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-- 381 (459)
T ss_dssp GHHHHHHSCC-GGGGEE--ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC--
T ss_pred hhhhhhcccCCccccEE--eecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC--
Confidence 53210 000001110 111223345667777 4445556689999999972 1 23444544432
Q ss_pred eEEEE------EcCCCCEEEEEe
Q 001391 351 IWRCL------YDSLSSLLVTAG 367 (1088)
Q Consensus 351 V~~l~------~~~dg~~l~tg~ 367 (1088)
+-.+. ..|+|++|++..
T Consensus 382 ~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 382 PGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEEEEETTTTSTTCCSSEEEEEE
T ss_pred CCCCccCcCCcCCCCCCEEEEec
Confidence 22332 257888888875
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=93.35 E-value=7.4 Score=43.32 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEE
Q 001391 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVT 365 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~t 365 (1088)
+.+++.|..||.++.+|. +|+.+.++....+-.-.-+.|..+|+ ||+.
T Consensus 484 gglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence 678888999999999999 99999888654331111244555775 4544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.96 E-value=7.6 Score=42.89 Aligned_cols=51 Identities=6% Similarity=0.124 Sum_probs=35.3
Q ss_pred CCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe
Q 001391 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG 367 (1088)
Q Consensus 317 ~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~ 367 (1088)
.+.+++.|+.||.++.+|. +|+.+.+++...+-.-.-+.+..+|+ +|+...
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 4778889999999999999 99999888654431111245556775 554433
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.85 E-value=6.7 Score=38.80 Aligned_cols=219 Identities=8% Similarity=0.074 Sum_probs=132.8
Q ss_pred eEEEEEC----CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEc
Q 001391 89 FEVALFG----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1088)
Q Consensus 89 ~~la~~g----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~ 164 (1088)
.++++-. ..+|.|.|+.... ...+.-..- -+.-.+| ..+.||.-+ ..+++++|+
T Consensus 33 kyicVRe~~~~~~~VvIidl~n~~--------------~~~Rrpi~A----dsAIMhP---~~~IiALra-g~~LQiFnl 90 (327)
T d1utca2 33 KFICIREKVGEQAQVVIIDMNDPS--------------NPIRRPISA----DSAIMNP---ASKVIALKA-GKTLQIFNI 90 (327)
T ss_dssp SEEEEEEEETTEEEEEEEETTSTT--------------SCEEEECCC----SEEEECS---SSSEEEEEE-TTEEEEEET
T ss_pred CEEEEEeccCCCceEEEEECCCCC--------------cceecccch----hhhhcCC---CCcEEEEec-CCeEEEEeh
Confidence 5555422 3679999987543 122222122 2455678 888888876 568999999
Q ss_pred CCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccc
Q 001391 165 SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1088)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 244 (1088)
++.+.++.+.-++.-..|.. -+++..-+++. ..|+=|+++.
T Consensus 91 etK~klks~~~~e~VvfWkW----is~~~L~lVT~---taVYHW~~~g-------------------------------- 131 (327)
T d1utca2 91 EMKSKMKAHTMTDDVTFWKW----ISLNTVALVTD---NAVYHWSMEG-------------------------------- 131 (327)
T ss_dssp TTTEEEEEEECSSCCCEEEE----SSSSEEEEECS---SEEEEEESSS--------------------------------
T ss_pred hHhhhhceEEcCCCcEEEEe----cCCCEEEEEcC---CceEEEcccC--------------------------------
Confidence 99999998887775443331 23333334443 5789999861
Q ss_pred ceeeeEEEeCCC----CCEEEEEEcCCCCEEEEEE---C----CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE
Q 001391 245 TAVNLFRLVGHE----GSIFRIEWSSCGSKLVSVS---D----DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1088)
Q Consensus 245 ~~~~~~~~~gh~----~~V~~v~~sp~g~~l~s~s---~----Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~ 313 (1088)
...+.+.+..|. ..|..-..+++.++++..+ . .|.+.+|..+.+.. ..+.||.+....
T Consensus 132 ~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-----------Q~ieGhaa~F~~ 200 (327)
T d1utca2 132 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----------QPIEGHAASFAQ 200 (327)
T ss_dssp SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-----------EEECCSEEEEEE
T ss_pred CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-----------ccccceeeeeEE
Confidence 123444454443 4577777788888765432 2 36778898877533 367788666655
Q ss_pred EEECC-----CEEEEEe---CCCcEEEEcCC----Cc-----eeEEEcc---cCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 001391 314 CCLTD-----SFIITAG---EDCTCRVWGSD----GK-----QLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (1088)
Q Consensus 314 v~~~~-----~~l~sg~---~Dg~i~vWd~~----~~-----~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~Dg~I~ 373 (1088)
+.+.+ .+++.+. ..+.+.+-++. +. ....+.- ..++---++..++.-..+..-+.-|.|.
T Consensus 201 ~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~ 280 (327)
T d1utca2 201 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 280 (327)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEE
Confidence 55542 1233222 22678888872 11 1111111 1112234777888888888899999999
Q ss_pred EEEcCC
Q 001391 374 VHQFQA 379 (1088)
Q Consensus 374 iwd~~~ 379 (1088)
+||+.+
T Consensus 281 lyDleT 286 (327)
T d1utca2 281 LYDLET 286 (327)
T ss_dssp EEETTT
T ss_pred EEEccc
Confidence 999964
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=90.18 E-value=8.1 Score=40.34 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=34.7
Q ss_pred CCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecc
Q 001391 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (1088)
Q Consensus 35 ~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~ 75 (1088)
|+||.... ++.|-+.|+++.++...+.......+|++...+
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~ 141 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQK 141 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECC
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeeccc
Confidence 89999987 499999999999988877776666799988873
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.40 E-value=17 Score=35.17 Aligned_cols=249 Identities=9% Similarity=-0.026 Sum_probs=132.2
Q ss_pred CEEEEEeCCeEEEEECCCCee-----EEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTL-----IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELS 109 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~-----~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~ 109 (1088)
.+|+-+..+.|+-.++..... ...+..+ ...+.+++|. +..+ .+..+ ..++.|+..+++...
T Consensus 2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~-~~~~~~ld~D-------~~~~---~iywsd~~~~~I~~~~l~g~~- 69 (263)
T d1npea_ 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFD-------CVDK---VVYWTDISEPSIGRASLHGGE- 69 (263)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEE-------TTTT---EEEEEETTTTEEEEEESSSCC-
T ss_pred CEEEEeCCCeEEEEECCCccccccccccccccC-CCcEEEEEEE-------eCCC---EEEEEECCCCeEEEEEcccCC-
Confidence 467777777888888754321 1112222 2257888887 3321 34433 336778888776422
Q ss_pred CCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeec
Q 001391 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~ 188 (1088)
.+ ..+..-...+.++++.. -++.|+.+ ...+.|.+.++........+... ......+++.
T Consensus 70 ------------~~--~v~~~~~~~p~~iAvD~---~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~-l~~p~~l~vd- 130 (263)
T d1npea_ 70 ------------PT--TIIRQDLGSPEGIALDH---LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVNPRGIVTD- 130 (263)
T ss_dssp ------------CE--EEECTTCCCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEE-
T ss_pred ------------cE--EEEEeccccccEEEEec---cCCeEEEeccCCCEEEEEecCCceEEEEeccc-ccCCcEEEEe-
Confidence 11 11222235688999987 56666544 45678999998765433222221 1223344442
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
...+.++.+-...+.-+|+... ++ ...........-....++++.+.+
T Consensus 131 -p~~g~ly~t~~~~~~~~I~r~~---------------~d----------------G~~~~~i~~~~~~~P~glaiD~~~ 178 (263)
T d1npea_ 131 -PVRGNLYWTDWNRDNPKIETSH---------------MD----------------GTNRRILAQDNLGLPNGLTFDAFS 178 (263)
T ss_dssp -TTTTEEEEEECCSSSCEEEEEE---------------TT----------------SCCCEEEECTTCSCEEEEEEETTT
T ss_pred -cccCcEEEeecCCCCcEEEEec---------------CC----------------CCCceeeeeecccccceEEEeecC
Confidence 2233333332222233344332 00 111111122333567899999887
Q ss_pred CEEEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEE-EEeCCCcEEEEcC-CCceeEEEcc
Q 001391 269 SKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFII-TAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 269 ~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~-sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
+.|.-+ ...+.|...++..... +. ...+-. ...++++.++.|+ +-...+.|...|. .++.+..+..
T Consensus 179 ~~lYw~d~~~~~I~~~~~~g~~~------~~----v~~~~~-~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~ 247 (263)
T d1npea_ 179 SQLCWVDAGTHRAECLNPAQPGR------RK----VLEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (263)
T ss_dssp TEEEEEETTTTEEEEEETTEEEE------EE----EEECCC-SEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred cEEEEEeCCCCEEEEEECCCCCe------EE----EECCCC-CcEEEEEECCEEEEEECCCCEEEEEECCCCccceEECC
Confidence 777554 5677888888876422 11 222222 2357777765554 4446678888888 6777766644
Q ss_pred cCCCCeEEEEEcC
Q 001391 346 HIGRGIWRCLYDS 358 (1088)
Q Consensus 346 h~~~~V~~l~~~~ 358 (1088)
+.......|++.+
T Consensus 248 ~~~~~~~gi~v~~ 260 (263)
T d1npea_ 248 HKQTRLYGITIAL 260 (263)
T ss_dssp SSCCCCCCEEEEC
T ss_pred CCCCCcceEEEeC
Confidence 4432344565544
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.19 E-value=23 Score=35.52 Aligned_cols=214 Identities=13% Similarity=0.172 Sum_probs=113.6
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
|+...+++-+.+|.|+--++..-..+. ....++ ...+.....+.-+..+.+++-|
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~----~~~~~~---------------------k~~D~v~~~~~~~t~d~ll~fT 57 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASN----GQDFAM---------------------KDTDRLLAMLEMNTKDVLLLFT 57 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTT----TCCCCC---------------------CTTCCEEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcC----CCCCcc---------------------cCCceEEEEEEEcCCCEEEEEe
Confidence 566788999999999876552200000 000000 1111122233334456899999
Q ss_pred cCCeEEEEEeccCCcceeE-------EeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc-c
Q 001391 438 NHGYLYHTKLCDMDSVNWN-------KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP-Q 509 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~-------~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~-~ 509 (1088)
+.|.+|..+.++.....|. .++....+..+..+-.... ...+..++..+..|.++...+..-.... .
T Consensus 58 ~~Grvy~l~v~eiP~~~~~s~G~pi~~ll~l~~~e~ii~~~~~~~-----~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~ 132 (323)
T d1wp5a_ 58 NKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPIND-----FELNGYFLFVTRNGMVKKTELKHYKAQRYS 132 (323)
T ss_dssp TTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESC-----TTSSCEEEEEETTSEEEEEEGGGGCCSCCS
T ss_pred cCCEEEEEeeccCcccccccccccceeeecccCCcceEEEeeccc-----cccceeEEEEeehhheeeccHHHhhhhhcc
Confidence 9999999888775543331 1122223344444332222 1345788888999999998876432111 1
Q ss_pred eeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEe-
Q 001391 510 LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA- 588 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~- 588 (1088)
.... .........+..+. ...+...++.++..|.+..++.+.-...... ..-++.....-...|.+...
T Consensus 133 ~g~~-~i~L~~~D~l~~v~--~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~-------a~GV~~ikL~~~D~vv~~~~~ 202 (323)
T d1wp5a_ 133 KPLT-GINLKNDDQVVDVH--LTDGMNELFLVTHNGYALWFDESEVSIVGVR-------AAGVKGMNLKEGDYIVSGQLI 202 (323)
T ss_dssp SCEE-CSCCCTTCCEEEEE--EECSCSEEEEEETTSEEEEEEGGGSCBCCSS-------CCCEECCCCCTTCCEEEEEEE
T ss_pred chhh-hcccccccccccee--ccCCCeEEEEEEecceeeEeecccccccCcc-------cccccccccccccccchhhhc
Confidence 0111 11112222333332 3344456777778999999987743221110 00011111223455655544
Q ss_pred eeCCCEEEEEcCCCcEEEEeCCc
Q 001391 589 SFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 589 spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
.+++..|++.+..|..+.-.++.
T Consensus 203 ~~~~~~ll~~T~~G~gKr~~~~e 225 (323)
T d1wp5a_ 203 TSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CCTTCEEEEEETTSEEEEEEGGG
T ss_pred cccccceeeeeeeheeecccchh
Confidence 45678888999999998877654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=81.58 E-value=30 Score=35.00 Aligned_cols=200 Identities=14% Similarity=0.139 Sum_probs=103.5
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCce---eEEEEeeecCCCCCcEEEEEe-c-C--CeEEEEEeccCccccC
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC---LLYSMKLWGDNLEALRIASGT-I-Y--NEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~---~~~s~~~~~~s~~~~~l~sg~-~-d--g~I~vwd~~~~~~~~~ 218 (1088)
+..+++.....+-|.+||+. |+.+..+....-. +.+.+.+ .....-++.++ . + .+|.+|.+....
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l---~~~~~di~vasnR~~~~~~l~~~~id~~~---- 110 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPL---NGKKVDIAAASNRSEGKNTIEIYAIDGKN---- 110 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEE---TTEEEEEEEEEECCTTTCEEEEEEEETTT----
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCcccccccccc---CCcceEEEEEeCCcCcceeEEEEEecCcc----
Confidence 55666666666679999984 7777776533211 1122222 12222344444 2 2 367788775110
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEE--cCC-CC-EEEEEECCCcEEEEEcCCCcccCCC
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW--SSC-GS-KLVSVSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~--sp~-g~-~l~s~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
..+..+.. ...+ ...-...+.++++ +|. +. +++....+|.+..|.+...... ..
T Consensus 111 ----------------~~l~~~~~--~~~p---~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g-~v 168 (353)
T d1h6la_ 111 ----------------GTLQSITD--PNRP---IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG-YI 168 (353)
T ss_dssp ----------------TEEEECSC--SSSC---EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-SE
T ss_pred ----------------cccccccc--cccc---cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC-ce
Confidence 00000000 0000 0111234677777 554 44 4566777899998887543210 00
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC---C---ceeEEEcc--cCCCCeEEEEEc--CC--C
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD---G---KQLKMIKE--HIGRGIWRCLYD--SL--S 360 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~---~---~~~~~~~~--h~~~~V~~l~~~--~d--g 360 (1088)
....+ ....-...+-.|.+. ...|+.+-++.-+..++.+ + ..+....+ ..+ -+..|++- .+ |
T Consensus 169 ~~~lv---r~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~-D~EGlaiy~~~~~~G 244 (353)
T d1h6la_ 169 SGKKV---RAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTP-DIEGLTIYYAADGKG 244 (353)
T ss_dssp EEEEE---EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCS-CEEEEEEEECGGGCE
T ss_pred eeEee---eccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccC-CccccEEEEcCCCCe
Confidence 01222 223334567788887 4788888888766655552 1 22222222 233 37777753 23 3
Q ss_pred CEEEEEeCCCCEEEEEcCC
Q 001391 361 SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~ 379 (1088)
-+|++.-.|++..+||..+
T Consensus 245 ylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 245 YLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EEEEEEGGGTEEEEEESST
T ss_pred EEEEEcCCCCeEEEEecCC
Confidence 3555555788999999854
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.03 E-value=28 Score=33.63 Aligned_cols=238 Identities=9% Similarity=-0.045 Sum_probs=124.9
Q ss_pred EEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCC
Q 001391 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQ 115 (1088)
Q Consensus 37 ~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~ 115 (1088)
+|+.+....|+-.++.+......+.. ...+.+++|. +..+ .+..+ .+.+.|.-.++.....
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~~~--~~~~~~id~d-------~~~~---~lYw~D~~~~~I~~~~l~~~~~------ 64 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLIPN--LRNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG------ 64 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECS--CSSEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC-----------
T ss_pred EEEEECCCeEEEEECCCCcceeeeCC--CCceEEEEEE-------eCCC---EEEEEECCCCEEEEEEecCCCC------
Confidence 56666667799999987654433333 2357889987 4331 33333 2356666666542110
Q ss_pred CccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc
Q 001391 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 116 ~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (1088)
.......+...-..+..+++.+ .++.|..+ ...+.|.+.++........+.... .....+++. ...+.
T Consensus 65 -----~~~~~~~~~~~~~~p~glAvD~---~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~-~~P~~l~vd--~~~g~ 133 (266)
T d1ijqa1 65 -----VSSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-SKPRAIVVD--PVHGF 133 (266)
T ss_dssp --------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSEEEEEECTT-CCEEEEEEE--TTTTE
T ss_pred -----CcceEEEEeCCCCCcceEEEee---ccceEEEEecCCCEEEeEecCCceEEEEEcCCC-CCcceEEEE--cccCe
Confidence 0011111222234567889987 55555554 456789999987665443333221 123344442 22344
Q ss_pred EEEEE-ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEE
Q 001391 195 RIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLV 272 (1088)
Q Consensus 195 ~l~sg-~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~ 272 (1088)
+..+. +..+.|...++. +.....+ ...-....++++.+.++.|.
T Consensus 134 ly~~~~~~~~~I~r~~~d----------------------------------Gs~~~~l~~~~~~~p~gl~iD~~~~~lY 179 (266)
T d1ijqa1 134 MYWTDWGTPAKIKKGGLN----------------------------------GVDIYSLVTENIQWPNGITLDLLSGRLY 179 (266)
T ss_dssp EEEEECSSSCEEEEEETT----------------------------------SCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEEeccCCCcceeEeccC----------------------------------CCceecccccccceeeEEEeeccccEEE
Confidence 44432 223344444443 2222222 23346678999999887666
Q ss_pred EE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEE-eCCCcEEEEcC-CCceeEEEcc
Q 001391 273 SV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA-GEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 273 s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg-~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
-+ ...+.|...++..... +.+. ..........++++.+..|+-. ..++.|...+. +++....+..
T Consensus 180 w~d~~~~~I~~~~~dG~~~------~~~~--~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 180 WVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EEETTTTEEEEEETTSCSC------EEEE--ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EecCCcCEEEEEECCCCCE------EEEE--eCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 55 5567888888865422 2111 1222223456777775555444 46677777666 5555554443
|